ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3620 check: MH A KOG0330 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3620 1276354 1277814 487
(487 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR065c [A] KOG0330 ATP-dependent RNA helicase 778 0.0
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 486 e-137
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 442 e-124
7298752 [A] KOG0330 ATP-dependent RNA helicase 422 e-118
CE00337 [A] KOG0330 ATP-dependent RNA helicase 402 e-112
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 382 e-106
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 305 1e-82
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 290 4e-78
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 285 8e-77
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 281 1e-75
YHR169w [A] KOG0340 ATP-dependent RNA helicase 279 8e-75
7303950 [A] KOG0340 ATP-dependent RNA helicase 263 6e-70
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 258 1e-68
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 258 2e-68
CE23814 [A] KOG0340 ATP-dependent RNA helicase 257 2e-68
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 251 2e-66
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 251 2e-66
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 248 2e-65
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 243 4e-64
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 243 4e-64
CE27030 [A] KOG0338 ATP-dependent RNA helicase 243 4e-64
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 243 4e-64
7304081 [A] KOG0338 ATP-dependent RNA helicase 241 1e-63
YLL008w [A] KOG0338 ATP-dependent RNA helicase 241 2e-63
7294797 [A] KOG0339 ATP-dependent RNA helicase 240 4e-63
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 239 5e-63
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 239 7e-63
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 239 9e-63
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 238 1e-62
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 237 3e-62
YPL119c [A] KOG0335 ATP-dependent RNA helicase 236 4e-62
YOR204w [A] KOG0335 ATP-dependent RNA helicase 236 6e-62
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 236 6e-62
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 234 2e-61
7299061 [A] KOG0335 ATP-dependent RNA helicase 234 2e-61
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 232 1e-60
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 232 1e-60
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 232 1e-60
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 231 2e-60
7290853 [A] KOG0331 ATP-dependent RNA helicase 231 2e-60
YGL078c [A] KOG0331 ATP-dependent RNA helicase 230 4e-60
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 230 4e-60
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 228 1e-59
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 228 2e-59
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 228 2e-59
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 228 2e-59
SPCC10H11.01 [A] KOG0334 RNA helicase 227 3e-59
At1g20920 [A] KOG0334 RNA helicase 227 3e-59
7295314 [A] KOG0331 ATP-dependent RNA helicase 226 5e-59
7293060 [A] KOG0334 RNA helicase 226 8e-59
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 224 2e-58
CE28369 [A] KOG0335 ATP-dependent RNA helicase 224 3e-58
CE24451 [A] KOG0335 ATP-dependent RNA helicase 224 3e-58
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 223 4e-58
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 222 9e-58
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 222 1e-57
CE18785 [A] KOG0331 ATP-dependent RNA helicase 221 1e-57
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 220 4e-57
CE28031 [A] KOG0334 RNA helicase 220 4e-57
CE27427 [A] KOG0334 RNA helicase 220 4e-57
YNL112w [A] KOG0331 ATP-dependent RNA helicase 219 9e-57
SPBC4F6.07c [A] KOG0347 RNA helicase 219 9e-57
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 219 9e-57
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 219 9e-57
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 219 9e-57
7296646 [A] KOG0331 ATP-dependent RNA helicase 218 2e-56
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 217 4e-56
Hs7662318 [A] KOG0334 RNA helicase 216 5e-56
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 215 1e-55
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 215 1e-55
At5g54910 [A] KOG0343 RNA Helicase 214 2e-55
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 214 2e-55
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 214 3e-55
SPAC1093.05 [A] KOG0343 RNA Helicase 213 7e-55
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 213 7e-55
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 213 7e-55
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 212 9e-55
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 212 9e-55
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 212 1e-54
At3g09620 [A] KOG0334 RNA helicase 211 3e-54
7298989 [A] KOG0336 ATP-dependent RNA helicase 211 3e-54
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 210 3e-54
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 210 3e-54
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 209 6e-54
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 209 8e-54
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 209 1e-53
CE27553 [A] KOG0337 ATP-dependent RNA helicase 208 2e-53
7298204 [A] KOG0335 ATP-dependent RNA helicase 207 4e-53
7296891 [A] KOG0341 DEAD-box protein abstrakt 206 6e-53
YJL033w [A] KOG0343 RNA Helicase 206 8e-53
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 206 8e-53
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 205 1e-52
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 205 1e-52
CE25231 [A] KOG0343 RNA Helicase 204 2e-52
Hs13514831 [A] KOG0343 RNA Helicase 204 2e-52
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 204 2e-52
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 204 3e-52
CE17559 [A] KOG0339 ATP-dependent RNA helicase 203 5e-52
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 202 1e-51
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 201 2e-51
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 201 2e-51
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 201 2e-51
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 201 3e-51
CE23832 [A] KOG0341 DEAD-box protein abstrakt 200 3e-51
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 200 5e-51
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 199 1e-50
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 198 2e-50
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 197 2e-50
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 196 7e-50
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 193 4e-49
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 193 4e-49
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 193 4e-49
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 192 7e-49
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 191 2e-48
CE22474 [A] KOG0336 ATP-dependent RNA helicase 191 3e-48
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 190 4e-48
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 189 6e-48
YDL160c [A] KOG0326 ATP-dependent RNA helicase 189 8e-48
CE07736 [A] KOG0335 ATP-dependent RNA helicase 187 2e-47
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 186 5e-47
YFL002c [A] KOG0345 ATP-dependent RNA helicase 186 7e-47
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 186 7e-47
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 185 1e-46
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 185 1e-46
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 185 2e-46
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 185 2e-46
CE00839 [A] KOG0326 ATP-dependent RNA helicase 185 2e-46
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 184 2e-46
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 184 3e-46
7293369 [A] KOG0343 RNA Helicase 184 3e-46
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 183 6e-46
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 183 6e-46
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 182 8e-46
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 182 1e-45
CE11190 [A] KOG0347 RNA helicase 182 1e-45
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 181 2e-45
7299006 [A] KOG0345 ATP-dependent RNA helicase 181 3e-45
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 180 4e-45
CE25121 [A] KOG0335 ATP-dependent RNA helicase 179 6e-45
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 179 8e-45
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 179 8e-45
YGL171w [A] KOG0344 ATP-dependent RNA helicase 179 1e-44
CE03025 [A] KOG0329 ATP-dependent RNA helicase 179 1e-44
YDL084w [A] KOG0329 ATP-dependent RNA helicase 178 1e-44
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 178 1e-44
7296990 [A] KOG0329 ATP-dependent RNA helicase 178 1e-44
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 178 2e-44
At3g16840 [A] KOG0347 RNA helicase 177 2e-44
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 177 4e-44
7297629 [A] KOG0326 ATP-dependent RNA helicase 176 7e-44
Hs9966805 [A] KOG0347 RNA helicase 176 9e-44
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 176 9e-44
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 175 1e-43
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 175 1e-43
YBR237w [A] KOG0334 RNA helicase 175 2e-43
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 174 3e-43
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 174 3e-43
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 173 5e-43
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 173 5e-43
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 172 1e-42
CE09012 [A] KOG0335 ATP-dependent RNA helicase 171 2e-42
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 2e-42
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 170 4e-42
ECU10g1680 [A] KOG0343 RNA Helicase 170 5e-42
YOR046c [A] KOG0332 ATP-dependent RNA helicase 169 7e-42
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 169 7e-42
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 169 9e-42
7293941 [A] KOG0344 ATP-dependent RNA helicase 168 1e-41
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 167 3e-41
7293348 [A] KOG0348 ATP-dependent RNA helicase 162 8e-40
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 162 1e-39
Hs9506931 [A] KOG0346 RNA helicase 161 2e-39
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 160 4e-39
CE29052 [A] KOG0335 ATP-dependent RNA helicase 160 5e-39
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 159 7e-39
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 158 2e-38
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 158 2e-38
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 4e-38
7302399 [A] KOG0347 RNA helicase 157 4e-38
YBR142w [A] KOG0347 RNA helicase 155 1e-37
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 155 1e-37
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 155 1e-37
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 153 5e-37
CE18221 [A] KOG0332 ATP-dependent RNA helicase 153 6e-37
CE18220 [A] KOG0332 ATP-dependent RNA helicase 153 6e-37
CE18219 [A] KOG0332 ATP-dependent RNA helicase 153 6e-37
At4g34910 [A] KOG0346 RNA helicase 152 1e-36
7294824 [K] KOG4284 DEAD box protein 151 2e-36
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 150 3e-36
SPCC1494.06c [A] KOG0346 RNA helicase 150 4e-36
CE03821 [A] KOG0345 ATP-dependent RNA helicase 149 7e-36
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 149 9e-36
YKR024c [A] KOG0348 ATP-dependent RNA helicase 147 3e-35
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 147 5e-35
YLR276c [A] KOG0346 RNA helicase 146 6e-35
7295505 [A] KOG0346 RNA helicase 146 6e-35
Hs14251212 [K] KOG4284 DEAD box protein 145 1e-34
CE11402 [A] KOG0334 RNA helicase 144 3e-34
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 144 4e-34
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 143 7e-34
YDL031w [A] KOG0337 ATP-dependent RNA helicase 142 1e-33
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 142 1e-33
CE26264 [A] KOG0335 ATP-dependent RNA helicase 140 3e-33
CE06239 [A] KOG0344 ATP-dependent RNA helicase 140 3e-33
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 136 8e-32
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 136 8e-32
CE27336 [A] KOG0334 RNA helicase 133 7e-31
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 130 4e-30
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 130 6e-30
CE28485 [K] KOG4284 DEAD box protein 129 8e-30
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 126 8e-29
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 124 2e-28
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 123 7e-28
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 123 7e-28
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 122 9e-28
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 121 2e-27
7296165 [A] KOG0330 ATP-dependent RNA helicase 119 8e-27
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 118 2e-26
CE27728 [A] KOG0346 RNA helicase 116 7e-26
CE29051 [A] KOG0335 ATP-dependent RNA helicase 114 4e-25
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 108 2e-23
7290730 [A] KOG0331 ATP-dependent RNA helicase 106 7e-23
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 99 1e-20
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 98 2e-20
YGL064c [A] KOG0335 ATP-dependent RNA helicase 94 4e-19
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 93 8e-19
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 92 2e-18
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 90 9e-18
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 89 2e-17
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 81 3e-15
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 78 3e-14
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 74 5e-13
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 70 7e-12
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 69 2e-11
CE13130_2 [L] KOG0351 ATP-dependent DNA helicase 69 2e-11
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 67 5e-11
CE06825 [A] KOG0335 ATP-dependent RNA helicase 67 5e-11
Hs22045464 [A] KOG0343 RNA Helicase 67 6e-11
CE27320 [A] KOG0335 ATP-dependent RNA helicase 63 9e-10
At1g10930 [L] KOG0351 ATP-dependent DNA helicase 60 6e-09
CE26682 [R] KOG0353 ATP-dependent DNA helicase 59 2e-08
7294377 [L] KOG0352 ATP-dependent DNA helicase 58 4e-08
CE23511 [R] KOG0354 DEAD-box like helicase 57 5e-08
CE15167 [A] KOG0335 ATP-dependent RNA helicase 57 5e-08
7299503 [L] KOG0351 ATP-dependent DNA helicase 57 6e-08
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 56 1e-07
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 55 3e-07
YIR002c [R] KOG0354 DEAD-box like helicase 53 9e-07
7300752 [R] KOG0354 DEAD-box like helicase 53 9e-07
SPAC20H4.04 [R] KOG0354 DEAD-box like helicase 52 3e-06
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 50 1e-05
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 778 bits (2010), Expect = 0.0
Identities = 406/501 (81%), Positives = 437/501 (87%), Gaps = 14/501 (2%)
Query: 1 MAKIEKKQAVK-NNQVLSLAEKIKRKALEKQQ-----QAHANEPSPSDEDSAQSNSKDXX 54
M+KI K++ K N+++ SLAEKI+ KALE Q+ + S S+ED+ K
Sbjct: 43 MSKIVKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLK 102
Query: 55 XXXXXXXXXX--------XXXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSD 106
L+LVPELI+ACKNLNY+KPTPIQSKAIPPAL+G D
Sbjct: 103 SKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHD 162
Query: 107 IIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRS 166
IIGLAQTGSGKTAAFAIPILN+LWHDQ+PYYACILAPTRELAQQIKETFDSLGSLMGVRS
Sbjct: 163 IIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRS 222
Query: 167 TCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME 226
TCIVGGM+MMDQARDLMRKPHIIIATPGRLMDHLENTKGF+LRKLK+LVMDEADRLLDME
Sbjct: 223 TCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDME 282
Query: 227 FGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTL 286
FGPVLDRIL IIPTQ RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTL
Sbjct: 283 FGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTL 342
Query: 287 MVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQR 346
MVVPGGLKNT+LIYLLNEFIGK+ I+FTRTKANAER+S LCNLLEFSATALHGDLNQNQR
Sbjct: 343 MVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQR 402
Query: 347 TGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 406
G+LDLFKAGKRSILVATDVAARGLDIPSVDIV+NYDIPVDSKSYIHRVGRTARAGRSGK
Sbjct: 403 MGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 462
Query: 407 SISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQ 466
SISLVSQYDLELILRIE+VLGKKLPKE+VDK+ IL LRDSVDKANGEVVME+NRRNKEK
Sbjct: 463 SISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKI 522
Query: 467 ARGKGRRGRMATRDNMDREER 487
ARGKGRRGRM TR+NMD ER
Sbjct: 523 ARGKGRRGRMMTRENMDMGER 543
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 486 bits (1251), Expect = e-137
Identities = 251/470 (53%), Positives = 336/470 (71%), Gaps = 14/470 (2%)
Query: 18 LAEKIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPE 77
L E K +L K+ + + S E S+++N+ D L ++ E
Sbjct: 8 LTEDKKNSSLNKKIETS----NSSSEKSSENNNGDSQNNEAPKTFKE-------LGVIDE 56
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
L EAC+ L + PTPIQ +AIP L D+IGLAQTGSGKTAAFA+P++ +LW++ P++
Sbjct: 57 LCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF 116
Query: 138 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
A +LAPTRELA QI E F+++G +GVRS IVGGM M+ QA L +KPH+++ TPGRLM
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKID 257
DHLENTKGF+L+ LKYL+MDEADRLLDM+FGP++D+IL IIP + R T LFSATMTSK++
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE-RRTLLFSATMTSKVE 235
Query: 258 KLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTK 317
KLQRASL PV+ AVS+K+ TVDTL+Q + P K+T+L+YL+NE G S I+F RT
Sbjct: 236 KLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTV 295
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
+ +R++ L L FSA LHG L+Q+ R GAL+ FK+G RS LVATDVAARGLDIP VD
Sbjct: 296 NDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVD 355
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDK 437
+VINYDIP DSK+YIHRVGRTARAGR+GKSI+LV+QYDLE LRIE +GKK+ + +DK
Sbjct: 356 VVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQEYEIDK 415
Query: 438 DAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDNMDREER 487
+ + L + V +A E ++++ + ++++GK R RD++DREE+
Sbjct: 416 EGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTKR--KRDDLDREEQ 463
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 442 bits (1136), Expect = e-124
Identities = 234/414 (56%), Positives = 297/414 (71%), Gaps = 7/414 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L + L EAC L + KPT IQ +AIP AL+G DIIGLA+TGSGKT AFA+PILN L
Sbjct: 29 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 88
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
Q +A +L PTRELA QI E F++LGS +GV+S IVGG+ M Q+ L +KPHIIIA
Sbjct: 89 TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIA 148
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGRL+DHLENTKGFNLR LKYLVMDEADR+L+M+F +D+IL +IP + R T+LFSAT
Sbjct: 149 TPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSAT 207
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTI 311
MT K+ KLQRA+L NPVKCAVS+KYQTV+ L Q + +P K+T+L+Y+LNE G S +
Sbjct: 208 MTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFM 267
Query: 312 VFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGL 371
+F T N +R + L L F+A LHG ++Q++R G+L+ FKA RSIL+ATDVA+RGL
Sbjct: 268 IFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGL 327
Query: 372 DIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP 431
DIP VD+V+N+DIP SK YIHRVGRTARAGRSGK+I+ V+QYD+EL RIE ++GKKLP
Sbjct: 328 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLP 387
Query: 432 KENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDNMDRE 485
D ++ L + V +A MEL ++K +R R DN D E
Sbjct: 388 GFPTQDDEVMMLTERVAEAQRFARMELREHGEKK------KRSREDAGDNDDTE 435
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 422 bits (1086), Expect = e-118
Identities = 225/447 (50%), Positives = 303/447 (67%), Gaps = 6/447 (1%)
Query: 28 EKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEACKNLNY 87
E++Q+ N D ++A S D L L L +AC L +
Sbjct: 24 EEEQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKD--LGLNEALCQACDELKW 81
Query: 88 NKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTREL 147
P+ IQ +AIP AL+G D+IGLA+TGSGKT AFA+PIL+ L + Q Y+A +L PTREL
Sbjct: 82 KAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTREL 141
Query: 148 AQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFN 207
A QI E F++LGS +G++ +VGGM M+ Q L +KPHIIIATPGRL+DHLEN KGFN
Sbjct: 142 AFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN 201
Query: 208 LRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNP 267
L+ +KYLVMDEADR+L+M+F LD+IL ++P + R T+LFSATMT K+ KLQRASL +P
Sbjct: 202 LKAIKYLVMDEADRILNMDFEVELDKILKVLPRE-RRTFLFSATMTKKVKKLQRASLKDP 260
Query: 268 VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLC 327
VK VSNKYQTV+ L Q+ + +P K+ +L+++LNE G S ++F T N + + +
Sbjct: 261 VKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALML 320
Query: 328 NLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVD 387
L +A LHG ++QN+R AL+ FKA RSIL++TDVA+RGLDIP VD+V+N+DIP
Sbjct: 321 RALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTH 380
Query: 388 SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSV 447
SK YIHRVGRTARAGRSGK+I+LVSQYD+EL RIE +LGK+L ++D ++AL++ V
Sbjct: 381 SKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERV 440
Query: 448 DKANGEVVMELNRRNKEKQARGKGRRG 474
+A +EL + RG +RG
Sbjct: 441 AEAQRTAKLEL---KDLEDTRGGHKRG 464
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 402 bits (1034), Expect = e-112
Identities = 210/396 (53%), Positives = 281/396 (70%), Gaps = 2/396 (0%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
L +AC+ L + KP+ IQ A+P AL+G D+IGLA+TGSGKT AFAIP+L L Q ++
Sbjct: 55 LCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFF 114
Query: 138 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
+L PTRELA QI + F++LGS +G+ + IVGG+ M QA L R+PHII+ATPGRL+
Sbjct: 115 CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLV 174
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKID 257
DHLENTKGFNL+ LK+L+MDEADR+L+M+F LD+IL +IP + R TYLFSATMT K+
Sbjct: 175 DHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRE-RRTYLFSATMTKKVS 233
Query: 258 KLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTK 317
KL+RASL +P + +VS++Y+TVD L Q + VP K T+L+YLLNE G S IVF T
Sbjct: 234 KLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATC 293
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
A +I+ + L A LHG ++Q +R G+L+ FK+ R ILV TDVAARGLDIP VD
Sbjct: 294 ATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVD 353
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDK 437
+VINYD+P SK Y+HRVGRTARAGRSG +I++V+QYD+E +IE LGKKL + +
Sbjct: 354 MVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVE 413
Query: 438 DAILALRDSVDKANGEVVMELNRRNKEKQARGKGRR 473
+ ++ L + +A +E+ + EK+ GK RR
Sbjct: 414 NEVMVLVERTQEATENARIEMKEMD-EKKKSGKKRR 448
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 382 bits (982), Expect = e-106
Identities = 207/410 (50%), Positives = 286/410 (69%), Gaps = 21/410 (5%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW---HDQ 133
EL++AC+ L + P+ IQ++A+P AL+G D+IGLAQTGSGKT AFAIPIL L +D
Sbjct: 19 ELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDS 78
Query: 134 QP---------YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR 184
+P ++AC+L+PTRELA QI E F++LG+ + +R +VGG+ M Q L +
Sbjct: 79 EPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGK 138
Query: 185 KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT 244
+PH+ ATPGRL DH+ +TKGF+L+ LKYLV+DEADRLL+ +F L++IL IP + R
Sbjct: 139 RPHV--ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE-RK 195
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
T+LFSATMT K+ KLQRA L NPVK ++KY TVDTL Q V K+ +L+Y+L+E
Sbjct: 196 TFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSE 255
Query: 305 FIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
++++FTRT ++ + L F A + G + Q++R GAL+ FKAG+ +ILV T
Sbjct: 256 MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCT 315
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
DVA+RGLDIPSVD+VINYDIP +SK YIHRVGRTARAGRSG ISLV+QY+LE ++IE
Sbjct: 316 DVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEK 375
Query: 425 VLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRG 474
++GKKLP+ ++D +L+L + V +A M + K++ G+ RRG
Sbjct: 376 LIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNM------KESGGRKRRG 419
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 305 bits (780), Expect = 1e-82
Identities = 175/416 (42%), Positives = 251/416 (60%), Gaps = 10/416 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L +E CK L KPTP+Q+ +P L G D++GLAQTGSGKTAAFA+PIL++L
Sbjct: 63 LGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAE 122
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
D +A ++ PTRELA Q+ E F +LGS + +R + IVGGM M+ Q L+ +PHI+I
Sbjct: 123 DPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVIT 182
Query: 192 TPGRLMDHLENTKGFN--LRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
TPGR+ LEN + K+LV+DEADR+LD+ F L I +P + R T LFS
Sbjct: 183 TPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP-KSRQTLLFS 241
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK- 308
ATMTS + L S +TVDTL Q + K +L+++L++ K
Sbjct: 242 ATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKG 301
Query: 309 --STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
S ++F T +R+S + + LE A+H +Q+ R AL FK+GK IL+ATDV
Sbjct: 302 IRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDV 361
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
A+RGLDIP+VD+VINYDIP D + Y+HRVGRTARAGR G ++S++++ D++LI +IE+ +
Sbjct: 362 ASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEV 421
Query: 427 GKKLPKEN--VDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRD 480
GKK+ N V D++ + V KA +M++ E + + + + R D
Sbjct: 422 GKKMEPYNKKVITDSLEVTK--VSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLAD 475
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 290 bits (741), Expect = 4e-78
Identities = 167/456 (36%), Positives = 252/456 (54%), Gaps = 10/456 (2%)
Query: 22 IKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEA 81
I + A +++ +E+ A+ N+ ++L +++
Sbjct: 214 ISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKG 273
Query: 82 CKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY---YA 138
NL + PT IQ K IP AL G DI+G A TGSGKTAAF +PIL +L + +
Sbjct: 274 LSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRV 333
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
IL PTRELA Q + S + +GG+S+ Q ++L ++P I+IATPGR +D
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 199 HLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDK 258
H+ N++GF + ++ +VMDEADR+L+ F L+ I+ P + R T LFSATMT K+D
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP-KSRQTMLFSATMTDKVDD 452
Query: 259 LQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG---LKNTFLIYLLNEFIGKSTIVFTR 315
L R SL PV+ V NK T L Q + V L+ LIYL E + TI+F R
Sbjct: 453 LIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFR 512
Query: 316 TKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPS 375
+KA A ++ + LL +AT +HG L+Q QR AL+ F+ GK + L+ATDVA+RG+DI
Sbjct: 513 SKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKG 572
Query: 376 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD---LELILRIEDVLGKKLPK 432
+++VINY+ P + Y+HRVGRTARAGRSG++I+L + D L+ + + KL
Sbjct: 573 IEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVN 632
Query: 433 ENVDKDAILALRDSVDKANGEVVMELNRRNKEKQAR 468
N+D + + +++ V L+ +E++ +
Sbjct: 633 RNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELK 668
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 285 bits (730), Expect = 8e-77
Identities = 174/415 (41%), Positives = 249/415 (59%), Gaps = 18/415 (4%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L + P LI+ K L +PT IQ I L+G + IG A+TGSGKTAAFA+PI+ +
Sbjct: 12 LGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSK 71
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
D +A IL PTRELA QI E F +LG+ + ++ IVGGM M+ Q+ DL ++PH+++A
Sbjct: 72 DPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVA 131
Query: 192 TPGRLMDHLENTKG---FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP-TQGRTTYL 247
TPGRL D + + LR++K+LVMDEADRLL F LD +++P ++ R T L
Sbjct: 132 TPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLL 191
Query: 248 FSATMTSKIDKLQRASLTNP-----VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL 302
F+AT+T I +L+ N + ++ TL Q+ + V ++ +L++LL
Sbjct: 192 FTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLL 251
Query: 303 N--EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
E KS I+F AE I ++ LLE T LH ++ Q +R +L F+A I
Sbjct: 252 TIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKI 311
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
LVATDVA+RGLDIPSV +VIN+D+P D YIHRVGRTARAGRSG+SIS+V++ D++L+
Sbjct: 312 LVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVH 371
Query: 421 RIEDVLGKKLPK-ENVDKDAILALRDSVDKANGEVVMEL------NRRNKEKQAR 468
IED +G KL + E+V ++ +L V A + +E+ RR K + R
Sbjct: 372 AIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKR 426
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 281 bits (720), Expect = 1e-75
Identities = 156/393 (39%), Positives = 233/393 (58%), Gaps = 6/393 (1%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
LI+ C+ +PT +Q + IP L G D+I ++QTGSGKT AF +PI++ L + +Y
Sbjct: 12 LIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKNRSFY 71
Query: 138 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
++APTREL+ QI E F+ + G+R +VGG + QA L ++PH+++ TPGR+
Sbjct: 72 CLVVAPTRELSSQIAECFNMFQAT-GLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIA 130
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKID 257
+H+ TK F +++ V+DEADR + +F L+ I+ + + R T LF+ATM+ +I
Sbjct: 131 EHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSL-REKRQTLLFTATMSDEIS 189
Query: 258 KLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTK 317
KL + L P + KY+TV L + + V KN+ L+ LL G S IVF
Sbjct: 190 KLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGMSVIVFVSMC 249
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
A +S L F + ALHG+L+Q +R A+ FK + ++LV TD+ +RGLDI VD
Sbjct: 250 VTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVD 309
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDK 437
+VIN+D+P K YIHRVGRTARAGRSG +I+LV+QYD+E I +IE L KKL + + K
Sbjct: 310 LVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFTLEKKLEEFKMMK 369
Query: 438 DAILALRDSVDKANGEVVMELNRRNKEKQARGK 470
+ ++ E + E KE++ R +
Sbjct: 370 KNFGTICARIE----EAIQEAQETLKEERKRNR 398
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 279 bits (713), Expect = 8e-75
Identities = 178/425 (41%), Positives = 240/425 (55%), Gaps = 24/425 (5%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L L E+ + + +PT IQ IP L+G D IG A+TGSGKT AFA P+L +
Sbjct: 7 LGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSE 66
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
D + +L PTRELA QI E F +LGS M +R + IVGG S++ QA DL RKPH IIA
Sbjct: 67 DPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIA 126
Query: 192 TPGRLMDHL----ENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG-RTTY 246
TPGRL H+ ++T G L + KYLV+DEAD LL F L ++ +P + R T
Sbjct: 127 TPGRLAHHIMSSGDDTVG-GLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTL 185
Query: 247 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVD------TLVQTLMVVPGGLKNTFLIY 300
LF+AT+T ++ LQ A + + + ++VD TL ++VP +K +L
Sbjct: 186 LFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQ 245
Query: 301 LL--NEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
LL E+ K+ I+F AE + LE +LH + Q +RT +L F+A
Sbjct: 246 LLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAA 305
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 418
IL+ATDVA+RGLDIP+V++V+NYDIP D +IHR GRTARAGR G +IS V+Q D+
Sbjct: 306 RILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSR 365
Query: 419 ILRIEDVLGKKLPKENV--DKDAILALRDSVDKANGEVVM--------ELNRRNKEKQAR 468
I IED + KK+ + N D I V KA E +M E R+ K+KQ
Sbjct: 366 IQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKKKQND 425
Query: 469 GKGRR 473
GK R
Sbjct: 426 GKSLR 430
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 263 bits (671), Expect = 6e-70
Identities = 161/411 (39%), Positives = 235/411 (57%), Gaps = 13/411 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L P L++ L TPIQ K IP L G D IG A+TGSGKT AFA+PIL +L
Sbjct: 12 LGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSE 71
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ ++A +L PT ELA QI E F G MGVR + GG M +++ LM++PHI++A
Sbjct: 72 EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVA 131
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
PGRL DHL F+ LKYLV+DEADR+L+ +F L I +P + R FSAT
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP-KTRQNLFFSAT 190
Query: 252 MTSKIDKLQRASL----TNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF-- 305
M D ++ +S+ ++ + + + TV+TL Q ++ ++ LI L ++
Sbjct: 191 MK---DFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247
Query: 306 --IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
+ ++FT TK + +S +E LHG + Q +R AL FK+ + L+A
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRI 422
TDVAARGLDIPSV++V+N+ +P K YIHRVGRTARAGR G SIS+ DLEL+ I
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367
Query: 423 EDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRR 473
E+ + KL + +D+ + + V+ E M+L+ + +++A+ R+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRK 418
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 258 bits (660), Expect = 1e-68
Identities = 150/377 (39%), Positives = 221/377 (57%), Gaps = 25/377 (6%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW--- 130
L EL++A + Y KP+PIQ AIP L+ D+IG+A+TGSGKTAAF +P+L +
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLP 379
Query: 131 -----HDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
++ + YA ++APTRELAQQI+E +G R T IVGG S+ +Q + +
Sbjct: 380 PMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG--- 242
I+IATPGRL+D LE L + Y+V+DEADR++DM F P + +L+ +P+
Sbjct: 440 CEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKP 498
Query: 243 -------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV 289
RTTY+FSATM +++L R L NPV + +T D + Q ++++
Sbjct: 499 ENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMM 558
Query: 290 PGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGA 349
K L LL+E K+ IVF TK N + I+ + + T LHG +Q QR +
Sbjct: 559 KESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREIS 618
Query: 350 LDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
L+ F+A + ++LVATDV RG+DIP V VINYD+P + Y HR+GRT RAG+SG + S
Sbjct: 619 LEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATS 678
Query: 410 LVSQYDLELILRIEDVL 426
++ +D E+ ++ +L
Sbjct: 679 FLTLHDTEVFYDLKQML 695
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 258 bits (658), Expect = 2e-68
Identities = 157/403 (38%), Positives = 223/403 (54%), Gaps = 9/403 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L++A + + +PTPIQ IP L G DI A TG+GKTAAFA+P+L +L +
Sbjct: 223 MNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIY 282
Query: 132 D--QQPYY-ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
Q P +L PTREL Q+ L + + VGG+ + Q L P I
Sbjct: 283 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 342
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLF 248
+IATPGRL+DHL N F+L ++ L++DEADR+LD F + I+ + + R T LF
Sbjct: 343 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHHRQTMLF 401
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG---GLKNTFLIYLLNEF 305
SATMT ++ L SL NPV+ V++ L Q + + G + + LL
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT 461
Query: 306 IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
++FT+TK A R+ L L+ LHG+L+Q QR AL FK + ILVATD
Sbjct: 462 FTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD 521
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
VAARGLDI V VIN+ +P K Y+HRVGRTARAGR+G+S+SLV + + +++ I
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKA 581
Query: 426 LGKKLPKENVDKDAILALRDSVDKANGEV--VMELNRRNKEKQ 466
+ + +D IL RD ++K +V V++L KE Q
Sbjct: 582 AKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQ 624
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 257 bits (657), Expect = 2e-68
Identities = 152/385 (39%), Positives = 228/385 (58%), Gaps = 12/385 (3%)
Query: 111 AQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV 170
A+TG+GKT AFAIPIL +L D YA IL PTRELA QI E F +LG + ++ + IV
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIV 249
Query: 171 GGMSMMDQARDLMRKPHIIIATPGRLMDHLEN---TKGFNLRKLKYLVMDEADRLLDMEF 227
GG S++ QAR+L +PH+++ATPGRL D +E+ T +K+++ V+DEADR+L+ ++
Sbjct: 250 GGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQY 309
Query: 228 GPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK--YQTVDTLVQT 285
L I I ++ R T L SAT+T+ I+ L R S P K TVD L Q
Sbjct: 310 NDQLKPIFESI-SEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQK 368
Query: 286 LMVVPGGLKNTFLIYLLNEFIGK----STIVFTRTKANAERISNLCNLLEFSATALHGDL 341
+V P +K+ +L+Y++ + K S ++F +T + ++ + L F +LH +
Sbjct: 369 YVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQI 428
Query: 342 NQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARA 401
Q QR AL F++ +++ TDVA+RGLDIP VD+V+N+++P K+YIHRVGR+ARA
Sbjct: 429 PQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARA 488
Query: 402 GRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRR 461
GR G ++S V+QYD+EL+ +E V+GKKL + V + V A E EL
Sbjct: 489 GRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEA--ELKLE 546
Query: 462 NKEKQARGKGRRGRMATRDNMDREE 486
N++ + + R + MD +E
Sbjct: 547 NQKFGEKKEINRRKELLMSGMDEDE 571
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 251 bits (641), Expect = 2e-66
Identities = 145/385 (37%), Positives = 212/385 (54%), Gaps = 38/385 (9%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
E+ +A K + Y +PTPIQ +AIP L+ D+IG+A+TGSGKTAAF +P+L +W P
Sbjct: 311 EVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLL--VWITSLPK 368
Query: 137 -----------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
YA I+APTRELAQQI+E + G L+G+++ ++GG S DQ L
Sbjct: 369 MERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMG 428
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG--- 242
++IATPGRL+D LEN + L + Y+++DEADR+LDM F P + ++L +P
Sbjct: 429 VEVVIATPGRLLDVLEN-RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487
Query: 243 ---------------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDT 281
R T +F+ATM+S I++L R L P + + + +
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547
Query: 282 LVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDL 341
+ Q + +VP K L+ +L I+F K A+ +S L F T LHG
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607
Query: 342 NQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARA 401
Q+QR AL K G ILVATDVA RG+D+ V +V+NYD+ + Y HR+GRT RA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667
Query: 402 GRSGKSISLVSQYDLELILRIEDVL 426
G+ GK+I+ ++ D + ++ VL
Sbjct: 668 GKHGKAITFLTPDDTAVYFDLKQVL 692
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 251 bits (641), Expect = 2e-66
Identities = 145/385 (37%), Positives = 212/385 (54%), Gaps = 38/385 (9%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
E+ +A K + Y +PTPIQ +AIP L+ D+IG+A+TGSGKTAAF +P+L +W P
Sbjct: 311 EVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLL--VWITSLPK 368
Query: 137 -----------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
YA I+APTRELAQQI+E + G L+G+++ ++GG S DQ L
Sbjct: 369 MERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMG 428
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG--- 242
++IATPGRL+D LEN + L + Y+++DEADR+LDM F P + ++L +P
Sbjct: 429 VEVVIATPGRLLDVLEN-RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487
Query: 243 ---------------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDT 281
R T +F+ATM+S I++L R L P + + + +
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547
Query: 282 LVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDL 341
+ Q + +VP K L+ +L I+F K A+ +S L F T LHG
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607
Query: 342 NQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARA 401
Q+QR AL K G ILVATDVA RG+D+ V +V+NYD+ + Y HR+GRT RA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667
Query: 402 GRSGKSISLVSQYDLELILRIEDVL 426
G+ GK+I+ ++ D + ++ VL
Sbjct: 668 GKHGKAITFLTPDDTAVYFDLKQVL 692
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 248 bits (632), Expect = 2e-65
Identities = 146/357 (40%), Positives = 211/357 (58%), Gaps = 11/357 (3%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL------NQLWH 131
++EA L + +PTPIQ++ P ALKG D+IG+A+TGSGKT A+ +P L +L
Sbjct: 149 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 208
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
D P ILAPTRELA QI+E G GVRSTCI GG Q RDL R I+IA
Sbjct: 209 DDGPI-VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIA 267
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGRL+D LE + NL+++ YLV+DEADR+LDM F P + +I++ I R T L+SAT
Sbjct: 268 TPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD-RQTLLWSAT 325
Query: 252 MTSKIDKLQRASLTNPVKCAV-SNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI-GKS 309
+++ L R L +P K + S + ++ Q + +VP K L+ LL + + G
Sbjct: 326 WPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSK 385
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F TK ++++ + + A A+HGD Q++R L FK+G+ I+ ATDVAAR
Sbjct: 386 ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAAR 445
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
GLD+ + V+NYD P + YIHR+GRT RAG G + + + + + + +L
Sbjct: 446 GLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKIL 502
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 243 bits (621), Expect = 4e-64
Identities = 142/387 (36%), Positives = 213/387 (54%), Gaps = 35/387 (9%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL------- 126
L P ++E Y +PTPIQ +AIP L+ DIIG+A+TGSGKTAAF IP+L
Sbjct: 398 LPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLP 457
Query: 127 --NQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR 184
+++ Q YA ILAPTRELAQQI+E G +G+R+ ++GG+S DQ L
Sbjct: 458 KIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 517
Query: 185 KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG-- 242
I+IATPGRL+D LEN + L + Y+V+DEADR++DM F P + +IL +P
Sbjct: 518 GCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576
Query: 243 -----------------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV 279
R T +F+ATM +++L R+ L P + + +
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636
Query: 280 DTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHG 339
+ + Q + ++ K L+ +L + I+F K + ++ + ++A LHG
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696
Query: 340 DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTA 399
Q QR AL KAG + ILVATDVA RG+DI V +V+NYD+ + + YIHR+GRT
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756
Query: 400 RAGRSGKSISLVSQYDLELILRIEDVL 426
RAG+SG +I+ +++ D + ++ +
Sbjct: 757 RAGKSGVAITFLTKEDSAVFYELKQAI 783
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 243 bits (621), Expect = 4e-64
Identities = 142/387 (36%), Positives = 213/387 (54%), Gaps = 35/387 (9%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL------- 126
L P ++E Y +PTPIQ +AIP L+ DIIG+A+TGSGKTAAF IP+L
Sbjct: 398 LPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLP 457
Query: 127 --NQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR 184
+++ Q YA ILAPTRELAQQI+E G +G+R+ ++GG+S DQ L
Sbjct: 458 KIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRM 517
Query: 185 KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG-- 242
I+IATPGRL+D LEN + L + Y+V+DEADR++DM F P + +IL +P
Sbjct: 518 GCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576
Query: 243 -----------------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV 279
R T +F+ATM +++L R+ L P + + +
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636
Query: 280 DTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHG 339
+ + Q + ++ K L+ +L + I+F K + ++ + ++A LHG
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696
Query: 340 DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTA 399
Q QR AL KAG + ILVATDVA RG+DI V +V+NYD+ + + YIHR+GRT
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756
Query: 400 RAGRSGKSISLVSQYDLELILRIEDVL 426
RAG+SG +I+ +++ D + ++ +
Sbjct: 757 RAGKSGVAITFLTKEDSAVFYELKQAI 783
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 243 bits (621), Expect = 4e-64
Identities = 164/501 (32%), Positives = 257/501 (50%), Gaps = 45/501 (8%)
Query: 2 AKIEKKQAVKNNQVLSLAEKIKRKALEKQQQAHANEPSPSDED--SAQSNSKDXXXXXXX 59
A+ E+K + + V L K R + +++++ ++ S +ED SA + K
Sbjct: 90 AEAEEKDE-EEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALIDGKSLDTSVNV 148
Query: 60 XXXXXXXXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTA 119
++L ++++AC Y+ PTPIQ IP AL G DI A TG+GKTA
Sbjct: 149 SFEQ--------MNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTA 200
Query: 120 AFAIPILNQLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMM 176
AF +PIL ++ + + +L PTRELA Q+ + F L + + + GG+ +
Sbjct: 201 AFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLK 260
Query: 177 DQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKY----------------------- 213
Q L P +++ATPGRL+DHL N+ FNL ++
Sbjct: 261 AQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQ 320
Query: 214 -LVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAV 272
LV+DEADR+L+ F ++ ++ + Q R T LFSATMT +ID+L SL PVK +
Sbjct: 321 VLVLDEADRMLEEAFRDQMNELIRLC-AQNRQTLLFSATMTEEIDELASMSLQKPVKIFI 379
Query: 273 SNKYQTVDTLVQTLMVVPGGL---KNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNL 329
+ T L Q + + G + + L+ +TIVF RTK + +R+ L L
Sbjct: 380 NENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGL 439
Query: 330 LEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSK 389
L + L Q QR +L FK + +LV+TD+A+RGLDI V VIN ++P K
Sbjct: 440 LGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIK 499
Query: 390 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKEN-VDKDAILALRDSVD 448
YIHRVGRTARAG++G+SISLV + + +L+ I + + K+ V + + A R +D
Sbjct: 500 QYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRID 559
Query: 449 KANGEVVMELNRRNK-EKQAR 468
+ E + +++ ++ EK+ R
Sbjct: 560 ELE-ETIQQIDEEDRAEKELR 579
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 243 bits (621), Expect = 4e-64
Identities = 150/386 (38%), Positives = 221/386 (56%), Gaps = 9/386 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L+L P + A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF IP+L +L
Sbjct: 33 LNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQ 92
Query: 132 D--QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
Q A IL+PTR+LA+Q + LG +R + +VGG SM DQ +L + P +I
Sbjct: 93 HVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVI 152
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
IATPGRLM L LR ++Y+V DEAD L M F L +IL + ++ R T LFS
Sbjct: 153 IATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL-SENRQTLLFS 211
Query: 250 ATMTSKIDKLQRASLTNP--VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307
AT+ S + + +A L P V+ V NK D + L V P K + L+YL+ E I
Sbjct: 212 ATLPSALAEFAKAGLREPQLVRLDVENKISP-DLKLSFLTVRPEE-KYSALLYLVREHIS 269
Query: 308 --KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
+ T++F TK + E +++L L + +GD++Q+ R + F+A K +L+ TD
Sbjct: 270 SDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTD 329
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
+AARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 330 IAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLF 389
Query: 426 LGKKLPKENVDKDAILALRDSVDKAN 451
L K + + + + + + + K +
Sbjct: 390 LSKPVRPAPTEDEVLKNMEEVMTKTS 415
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 241 bits (616), Expect = 1e-63
Identities = 157/460 (34%), Positives = 235/460 (50%), Gaps = 29/460 (6%)
Query: 21 KIKRKALEKQQQAHANEPSPSDE-------DSAQSNSKDXXXXXXXXXXXXXXXXXXXLD 73
+++ K K+++ A E DE D+ ++N + ++
Sbjct: 118 RLREKKESKKKKKKAGEEDEEDEGEKMQFADTVEANEQ--------------ITSFYQMN 163
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH-- 131
L L+ A L Y PTPIQ+ IP AL G DI G A TG+GKTAA+ +P L +L +
Sbjct: 164 LSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRP 223
Query: 132 --DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
++ +L PTREL Q+ + L + +GG+ + Q L + P I+
Sbjct: 224 LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIV 283
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
IATPGRL+DH++NT F L ++ L++DEADR+LD F + I+N + R T LFS
Sbjct: 284 IATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSC-CKTRQTMLFS 342
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV---PGGLKNTFLIYLLNEFI 306
ATM+ ++ L SL P+K V+N Q L Q + + G + L L+
Sbjct: 343 ATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTF 402
Query: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
+VF +TK A R+ L LL A LHG+L Q QR +L FK + +L+ATDV
Sbjct: 403 HDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDV 462
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
AARGLDI V VIN+ +P+ ++ YIHRVGRTARAGR+G S+SL + + +++ I
Sbjct: 463 AARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNA 522
Query: 427 GKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQ 466
+ + + I R+ + E+ L+ E+Q
Sbjct: 523 ESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQ 562
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 241 bits (615), Expect = 2e-63
Identities = 142/351 (40%), Positives = 204/351 (57%), Gaps = 10/351 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L +++ +L Y KP+PIQS IP AL G DII A TGSGKTAAF IPI+ +L +
Sbjct: 236 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 132 DQQPYYAC---ILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRKPH 187
+ +L PTRELA Q+ + + + G+ VGG+++ Q + L +P
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
I+IATPGR +DH+ N+ FN+ ++ LVMDEADR+L+ F L+ I+ ++P+ R L
Sbjct: 356 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSN-RQNLL 414
Query: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP--GGLKNTFLIYLLNEF 305
FSATM SKI L SL PV+ + + L Q + + LK L L+ +
Sbjct: 415 FSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKL 474
Query: 306 IG---KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
K +VF K A R+ + LL S LHG L Q QR +++ FK + +L+
Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 534
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413
TD+A+RGLDIP +++VINYD+P + Y+HRVGRTARAGR G+S++ V +
Sbjct: 535 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGE 585
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 240 bits (612), Expect = 4e-63
Identities = 139/348 (39%), Positives = 205/348 (57%), Gaps = 9/348 (2%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+LI+A + Y +PTPIQ++A+P AL G DIIG+A+TGSGKTAAF P+L + +Q
Sbjct: 279 QLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLK 338
Query: 137 -----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
ILAPTREL+ QI G + + C GG S +Q++ L + II+A
Sbjct: 339 PGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVA 398
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR++D ++ K NLR++ +LV+DEADR+ M F P + I N + R +FSAT
Sbjct: 399 TPGRMIDMVK-MKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPD-RQCLMFSAT 456
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLK--NTFLIYLLNEFIGKS 309
+I++L R L++PV+ + + + Q++ V P L+ N L +L+ S
Sbjct: 457 FKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGS 516
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F K +AE +SN + E++ LHGD++Q R + FK + ILVATDVAAR
Sbjct: 517 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 576
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 417
GLDIP + V+NYD D +++ HR+GRT RAG G + +LV+ D E
Sbjct: 577 GLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKE 624
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 239 bits (611), Expect = 5e-63
Identities = 149/422 (35%), Positives = 230/422 (54%), Gaps = 8/422 (1%)
Query: 5 EKKQAVKNNQVLSLAEKIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXX 64
++K K + V A++ ++K+ +K ++ ++ A + +D
Sbjct: 27 QQKAEEKTHTVEENADETQKKSEKKVKKVRGKIEEEEEKVEAMEDGEDEKNIVIVGKGIM 86
Query: 65 XXXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIP 124
LDL + A K + + T IQ+ +I P L+G D++G A+TGSGKT AF IP
Sbjct: 87 TNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIP 146
Query: 125 ILNQLWHDQ----QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQAR 180
+ L+ ++ ++ PTRELA Q K + L + ++GG + +A+
Sbjct: 147 AVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQ 206
Query: 181 DLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPT 240
+ +++IATPGRL+DHL+NTK F + LK LV+DEADR+L+ F +++IL I+P
Sbjct: 207 RIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP- 265
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTFL 298
+ R T LFSAT TSK+ L R SLT+PV V + + V + L Q VVP + L
Sbjct: 266 KTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILL 325
Query: 299 IYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
I L + + K +VF T + + + + + + + +HG ++QN+RT F K+
Sbjct: 326 ISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKK 385
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARA-GRSGKSISLVSQYDLE 417
IL+ TDVAARGLDIPSVD +I YD P YIHRVGRTAR G GK++ ++ +L+
Sbjct: 386 GILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ 445
Query: 418 LI 419
I
Sbjct: 446 FI 447
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 239 bits (610), Expect = 7e-63
Identities = 156/409 (38%), Positives = 223/409 (54%), Gaps = 29/409 (7%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL------NQLW 130
+++ A K Y KPT IQ +A+P L G D+IG+A+TGSGKTAAF +P++ +L
Sbjct: 238 QIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 297
Query: 131 HDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
D+ P I APTRELA QI G+R + + GGMS +Q ++L I++
Sbjct: 298 RDEGPI-GVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVV 356
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D L+ K + + YLV+DEADR+ D+ F P + I+ I R T LFSA
Sbjct: 357 ATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPD-RQTLLFSA 414
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK-- 308
TM K++KL R L++P++ V + + Q + V+P + L +LL + G
Sbjct: 415 TMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEK--LPWLLEKLPGMID 472
Query: 309 --STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
+VF KA + I L F ALHGD +Q R L FK+G +L+ATDV
Sbjct: 473 EGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDV 532
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG-RSGKSISLVSQYDLELILRIEDV 425
AARGLDI S+ V+NYDI D ++HR+GRT RAG R G + +LV+Q + + +
Sbjct: 533 AARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNS 592
Query: 426 L---GKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKG 471
L G+ +P E D LA++D G + + R K+ RG G
Sbjct: 593 LVAAGQNVPPELTD----LAMKD------GRFKSKRDGRKGGKKGRGGG 631
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 239 bits (609), Expect = 9e-63
Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 16/368 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
++E K + +PTPIQS+ P A+KG D+IG+A+TGSGKT ++ +P + + + QP
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHV--NAQPML 167
Query: 138 A-------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
A +LAPTRELA QI++ GS +++TCI GG+ Q RDL + I+I
Sbjct: 168 AHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVI 227
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D +E+ NLR++ YLV+DEADR+LDM F P + +I++ I +T Y +SA
Sbjct: 228 ATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLY-WSA 285
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFI-GK 308
T ++++L + L NP K + + + ++ ++ V+ K L+ LL + + G
Sbjct: 286 TWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGS 345
Query: 309 STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAA 368
+VF TK ++I+ + + A ++HGD +Q +R L F++GK I+ ATDVAA
Sbjct: 346 RILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAA 405
Query: 369 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL-- 426
RGLD+ V VINYD P + Y+HR+GRT RAG G + + + + + ++L
Sbjct: 406 RGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQE 465
Query: 427 -GKKLPKE 433
G+K+ E
Sbjct: 466 AGQKVSPE 473
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 238 bits (608), Expect = 1e-62
Identities = 163/425 (38%), Positives = 225/425 (52%), Gaps = 48/425 (11%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY-- 136
I CK Y KPTP+Q AIP L+G D++ AQTGSGKTAAF PI++ + DQ
Sbjct: 174 IRRCK---YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRP 230
Query: 137 --------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
A IL+PTRELA QI + GV+ GG + Q R+L R I
Sbjct: 231 RGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDI 290
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRI---LNIIPTQGRTT 245
++ATPGRL D LE + +++ +++L +DEADR+LDM F P + +I +++ P R T
Sbjct: 291 LVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL--- 302
LFSAT +I +L L N + AV + D +VQ + V K + L+ LL
Sbjct: 350 LLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQ 409
Query: 303 --NEFIGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
N GK T+VF TK A+ + N + F AT++HGD Q +R AL FK+G+
Sbjct: 410 RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRT 469
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 418
ILVATDVAARGLDIP V V+N+D+P D Y+HR+GRT RAG+SG + + + + L
Sbjct: 470 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSL 529
Query: 419 ILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNR-RNKEKQARGKGRR--GR 475
+ +++ +AN EV L R ++ GK RR GR
Sbjct: 530 ARPLAELM---------------------QEANQEVPEWLTRYASRSSFGGGKNRRSGGR 568
Query: 476 MATRD 480
RD
Sbjct: 569 FGGRD 573
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 237 bits (604), Expect = 3e-62
Identities = 151/431 (35%), Positives = 230/431 (53%), Gaps = 19/431 (4%)
Query: 11 KNNQVLSLAEKIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXX 70
+ ++V++ E+ K+K ++++ A ED + +
Sbjct: 105 EEDEVIAEEEEPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKTFES------ 158
Query: 71 XLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
L L ++ K + + + T IQ+KAIPP + G D++G A+TGSGKT AF IP + L+
Sbjct: 159 -LSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLY 217
Query: 131 H----DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP 186
+ ++ PTRELA Q L ++GG +A L +
Sbjct: 218 RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGV 277
Query: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY 246
++++ATPGRL+DHLENT GF + LK+LVMDEADR+L+ F L +ILN++P + R T
Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLP-KTRQTS 336
Query: 247 LFSATMTSKIDKLQRASLTNPVKCAV--SNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
LFSAT ++K++ L R SLT+PV V K T + L Q VVP ++ FL+ L
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 305 FIGKSTI-VFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
F GK I VF T + + + L ++F + G ++QN+RT F + IL+
Sbjct: 397 FQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLC 456
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARA-GRSGKSISLVSQYDLELILRI 422
T+VAARGLD P VD ++ YD P + YIHRVGRTAR G GK++ +++ +L+ I +
Sbjct: 457 TNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYL 516
Query: 423 EDVLGKKLPKE 433
+ K+P E
Sbjct: 517 K---AAKIPVE 524
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 236 bits (603), Expect = 4e-62
Identities = 157/431 (36%), Positives = 230/431 (52%), Gaps = 44/431 (10%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD----- 132
L+E K ++ KPTP+Q +IP KG D++ AQTGSGKT F P+ +L+
Sbjct: 165 LMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPV 224
Query: 133 ---QQPYY-------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL 182
Q +Y A +LAPTRELA QI E VR + GG + +Q R++
Sbjct: 225 PEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREV 284
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL---NIIP 239
R +++ATPGRL D LE K +L +KYLV+DEADR+LDM F P + I+ ++
Sbjct: 285 DRGCDLLVATPGRLNDLLERGK-VSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPS 343
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI 299
+ R T +FSAT I L R L N + +V T + + Q ++ V K + L+
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALL 403
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
LL+ T++F TK A+++++ + F ATA+HGD Q +R AL FKA
Sbjct: 404 DLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVAD 463
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 419
ILVAT VAARGLDIP+V VINYD+P D Y+HR+GRT RAG +G + S + + ++
Sbjct: 464 ILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIV 523
Query: 420 LRIEDVLGKKLPKENVDKDAILALRDSVDKANGEV---VMELNRRNKEKQARGKGRRGRM 476
+ ++L ++AN EV + +L+R+N + R +G G
Sbjct: 524 KGLMEIL---------------------NEANQEVPTFLSDLSRQN-SRGGRTRGGGGFF 561
Query: 477 ATRDNMDREER 487
+R+N R+ R
Sbjct: 562 NSRNNGSRDYR 572
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 236 bits (602), Expect = 6e-62
Identities = 150/429 (34%), Positives = 235/429 (53%), Gaps = 25/429 (5%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW------- 130
L+E K + KPTP+Q ++P G D++ AQTGSGKT F P+L++ +
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 131 -HDQQPYY-------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL 182
Q +Y A I+APTRELA QI + V++ + GG + +Q R++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL---NIIP 239
R +++ATPGRL D LE K +L +KYLV+DEADR+LDM F P + I+ ++ P
Sbjct: 273 ERGCDLLVATPGRLNDLLERGK-ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI 299
R T +FSAT + I L R L++ + +V T + + Q ++ V K + L+
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
LL+ T++F TK A+++++ + F ATA+HGD Q++R AL F++G +
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 419
+LVAT VAARGLDIP+V VINYD+P D Y+HR+GRT RAG +G + + + + ++
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511
Query: 420 LRIEDVL---GKKLPKENVDKDAILALRDS-VDKANGEVVMELNRRNKEKQARGKGRRGR 475
+ ++L +++P + KDA+++ S + G NR ++ G G
Sbjct: 512 KGLHEILTEANQEVP--SFLKDAMMSAPGSRSNSRRGGFGRNNNRDYRKAGGASAGGWGS 569
Query: 476 MATRDNMDR 484
+RDN R
Sbjct: 570 SRSRDNSFR 578
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 236 bits (602), Expect = 6e-62
Identities = 145/377 (38%), Positives = 208/377 (54%), Gaps = 36/377 (9%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH----- 131
E+I+ + Y +PTPIQ +AIP L+ DIIG+A+TGSGKT AF IP+L+ +
Sbjct: 404 EIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIE 463
Query: 132 -----DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP 186
DQ PY A I+APTRELAQQI+E G +G+R+ +VGG+S +Q L
Sbjct: 464 RLEDVDQGPY-AIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC 522
Query: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG---- 242
I+IATPGRL+D LEN + L + Y+V+DEADR++DM F P + +IL +P
Sbjct: 523 EIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 581
Query: 243 --------------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTL 282
R T +F+ATM +++L R L P + + + +
Sbjct: 582 TEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 641
Query: 283 VQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLN 342
Q + ++ K L+ +L+ I I+F K A+ ++ L +++ LHG
Sbjct: 642 EQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 701
Query: 343 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
Q QR AL K+G + ILVATDVA RG+DI V +VINYD+ + Y HR+GRT RAG
Sbjct: 702 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG 761
Query: 403 RSGKSISLVSQYDLELI 419
++G +IS VS EL+
Sbjct: 762 KTGCAISPVSTCPPELM 778
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 234 bits (597), Expect = 2e-61
Identities = 147/363 (40%), Positives = 207/363 (56%), Gaps = 25/363 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD-------------- 132
Y +PTP+Q AIP + D++ AQTGSGKTAAF +PIL+Q++ D
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 133 ----QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
+Q + +LAPTRELA QI E VR + GG + Q RDL R H+
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 319
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL--NIIPTQG-RTT 245
++ATPGRL+D +E K L KYLV+DEADR+LDM F P + RI+ + +P +G R T
Sbjct: 320 LVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
+FSAT +I L R L + AV T + + Q ++ V K +FL+ LLN
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNA- 437
Query: 306 IGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
GK T+VF TK A+ + + ++ T++HGD +Q R AL F++GK ILVA
Sbjct: 438 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 497
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
T VAARGLDI +V VIN+D+P D + Y+HR+GRT R G G + S ++ ++ + +
Sbjct: 498 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 557
Query: 424 DVL 426
D+L
Sbjct: 558 DLL 560
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 234 bits (597), Expect = 2e-61
Identities = 143/352 (40%), Positives = 201/352 (56%), Gaps = 26/352 (7%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-------------HDQ 133
Y+KPTP+Q AIP + G D++ AQTGSGKTAAF +PILNQ++ + +
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374
Query: 134 QPYY--ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ Y +LAPTRELA QI E +R + GG + +Q R+L R H+I+A
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 434
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRI---LNIIPTQGRTTYLF 248
TPGRL D + K L +++LV+DEADR+LDM F P + RI LN+ PT R T +F
Sbjct: 435 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 493
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN----- 303
SAT +I +L L+N + AV T + + QT++ V K ++L+ LL+
Sbjct: 494 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDG 553
Query: 304 -EFIGKS-TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
E+ S T++F TK A+ + T++HGD Q +R AL F++G IL
Sbjct: 554 PEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 613
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413
VAT VAARGLDIP V VIN+D+P D + Y+HR+GRT R G G + S ++
Sbjct: 614 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNE 665
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 232 bits (591), Expect = 1e-60
Identities = 147/430 (34%), Positives = 234/430 (54%), Gaps = 18/430 (4%)
Query: 3 KIEKKQAVKNNQVLSLAEKIKR-----KALEKQQQAHANEPSPSDEDSAQSNSKDXXXXX 57
K ++++ +KN++ +AE++ + + E+ + A N S+ + + ++D
Sbjct: 19 KEKRQKPLKNDK--KIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQK 76
Query: 58 XXXXXXXXXXXX---XXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTG 114
L L + +A K + + T IQ ++IPP L G D++G A+TG
Sbjct: 77 SVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTG 136
Query: 115 SGKTAAFAIPILNQLW----HDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIV 170
SGKT AF IP + L+ + I++PTRELA QI L ++
Sbjct: 137 SGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVI 196
Query: 171 GGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPV 230
GG + +A L++ ++++ATPGRL+DHL+NTKGF R L+ LV+DEADR+L++ F
Sbjct: 197 GGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDE 256
Query: 231 LDRILNIIPTQGRTTYLFSATMTSKIDKLQRASL-TNPVKCAVSN--KYQTVDTLVQTLM 287
+ +I+ I+P++ R T LFSAT T+K++ L R SL P+ V + TV+ L Q +
Sbjct: 257 MRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYV 316
Query: 288 VVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRT 347
VV + L L + K IVF + A+ + ++ L N ++ LHG Q +RT
Sbjct: 317 VVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRT 376
Query: 348 GALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGR-SGK 406
F ++ IL+ T+VAARGLDIP+VD ++ YD P D + YIHRVGRTAR + +GK
Sbjct: 377 NTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGK 436
Query: 407 SISLVSQYDL 416
S+ ++ +L
Sbjct: 437 SLMFLAPSEL 446
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 232 bits (591), Expect = 1e-60
Identities = 138/346 (39%), Positives = 200/346 (56%), Gaps = 9/346 (2%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+L+ + Y +PTPIQ + +P AL G D+IG+A+TGSGKTAAF P+L + ++
Sbjct: 144 QLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELE 203
Query: 137 -----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A I+ PTREL QQI G +RS + GG SM +QA+ L I++
Sbjct: 204 PGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVC 263
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGRL+DH++ K NL+++ YLV DEADR+ DM F + I + + R T LFSAT
Sbjct: 264 TPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD-RQTLLFSAT 321
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGK-S 309
KI+KL R L +P++ + + + + Q + ++ G K +L L EF S
Sbjct: 322 FRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS 381
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F KANAE ++N + LHGD++Q++R + FK +LVATDVAAR
Sbjct: 382 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
GLDIPS+ VINYD+ D ++ HR+GRT RAG G + +L++ D
Sbjct: 442 GLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 232 bits (591), Expect = 1e-60
Identities = 142/362 (39%), Positives = 212/362 (58%), Gaps = 19/362 (5%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
+++ + ++ +PTPIQ + P AL G D++G+AQTGSGKT A+ +P + + H QPY
Sbjct: 103 VMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH--QPYL 160
Query: 138 -------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+LAPTRELAQQ+++ D G ++STCI GG Q RDL R I I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D LE+ K NLR+ YLV+DEADR+LDM F P + +I++ I R T ++SA
Sbjct: 221 ATPGRLIDFLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-RQTLMWSA 278
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T ++ +L L + + V N + + ++Q + V K+ LI L+ E + +
Sbjct: 279 TWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEK 338
Query: 310 ---TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
TI+F TK + ++ + A +HGD +Q +R L+ F++GK IL+ATDV
Sbjct: 339 ENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDV 398
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDL----ELILRI 422
A+RGLD+ V VINYD P S+ Y+HR+GRTAR+ G + + + +L ELI +
Sbjct: 399 ASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVL 458
Query: 423 ED 424
E+
Sbjct: 459 EE 460
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 231 bits (589), Expect = 2e-60
Identities = 148/347 (42%), Positives = 197/347 (56%), Gaps = 24/347 (6%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY-- 136
I+ CK Y KPTP+Q AIP G D++ AQTGSGKTAAF PI++ + DQ
Sbjct: 161 IQRCK---YVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERP 217
Query: 137 --------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
A IL+PTRELA QI + GV+ GG + Q R+L R I
Sbjct: 218 RGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDI 277
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRI---LNIIPTQGRTT 245
++ATPGRL D LE + +L+ +++L +DEADR+LDM F P + +I +++ P R T
Sbjct: 278 LVATPGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 336
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL--- 302
LFSAT +I +L L+N + AV + D +VQ + V K + L+ LL
Sbjct: 337 MLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQ 396
Query: 303 --NEFIGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
N GK T+VF TK A+ + N + F AT +HGD +Q +R AL FK G+
Sbjct: 397 RENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRT 456
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
ILVATDVAARGLDIP V V+N+D+P D Y+HR+GRT RAG SG
Sbjct: 457 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 231 bits (589), Expect = 2e-60
Identities = 142/349 (40%), Positives = 202/349 (57%), Gaps = 20/349 (5%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L +IE K + KPT IQS+ P AL G D++G+AQTGSGKT A+ +P + + + Q
Sbjct: 244 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGN-Q 302
Query: 134 QPYY------ACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMSMMDQARDLMRK 185
P A +LAPTRELAQQI+ G L +R TCI GG S + QARDL R
Sbjct: 303 PPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 362
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
+IIATPGRL+D LEN + NL++ YLV+DEADR+LDM F P + +I+ I R
Sbjct: 363 VEVIIATPGRLIDFLEN-RNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD-RQV 420
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTFLIYLLNE 304
++SAT ++ L L + ++ + + + + ++ ++ + + K L+ LLNE
Sbjct: 421 VMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNE 480
Query: 305 FI--------GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAG 356
G IVF TK E I + ++AT++HGD QN+R L F+ G
Sbjct: 481 ISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNG 540
Query: 357 KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
K +IL+ATDVA+RGLD+ + VINYD P S++Y+HR+GRT R + G
Sbjct: 541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLG 589
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 230 bits (586), Expect = 4e-60
Identities = 130/349 (37%), Positives = 207/349 (59%), Gaps = 11/349 (3%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP--YYACILAPT 144
+ KPTPIQ+ A P L G D++G+A+TGSGKT AF +P ++ L +DQ+ +++PT
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPT 191
Query: 145 RELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTK 204
RELA QI + L +G++ C+ GG+ D+ R ++K +++ATPGRL+D L+
Sbjct: 192 RELASQIYDNLIVLTDKVGMQCCCVYGGVPK-DEQRIQLKKSQVVVATPGRLLDLLQEGS 250
Query: 205 GFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASL 264
+L ++ YLV+DEADR+L+ F + I+ R T +F+AT ++ +L +
Sbjct: 251 -VDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309
Query: 265 TNPVKCAVSNKYQTVDT--LVQTLMVVPGGLKNTFLIYLLNEFIG-----KSTIVFTRTK 317
NP+K ++ N Q + Q + VV K L+ LL ++ + ++F K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
A R+ ++ A+HGDL+Q QRT AL+ FK+GK ++L+ATDVAARGLDIP+V
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVK 429
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
VIN P+ + Y+HR+GRT RAG++G + +L ++ + L + +VL
Sbjct: 430 TVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 478
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 230 bits (586), Expect = 4e-60
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 29/383 (7%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPI------LN 127
L E+++ K +NY +P+ IQ AIP L+ D+IG+A+TGSGKTAAF IP+ L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 128 QLWHDQQPY--YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
L YA +LAPTRELAQQI+ + +G R +VGG + +Q+ + +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG--- 242
HI++ATPGRL+D LE + F L + Y+VMDEADR+LDM F +++IL+ +P+
Sbjct: 376 AHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASE 434
Query: 243 ---------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM 287
R T +FSAT+ ++ L ++ L PV + N Q VD + Q +
Sbjct: 435 KDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVE 494
Query: 288 VVPGGLKNTFLI--YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQ 345
++ K + L + I+F K N E I+ N + + A LHG +Q Q
Sbjct: 495 MISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQ 554
Query: 346 RTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
R A++ + ILVATD+A RG+DIP+V +V+NY++ + Y HR+GRT RAG+SG
Sbjct: 555 RERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSG 614
Query: 406 KSISLVSQYDLELILRIEDVLGK 428
+I+ + D ++ + +L +
Sbjct: 615 TAITFLGPEDTDVYYDLRVLLSR 637
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 228 bits (582), Expect = 1e-59
Identities = 141/361 (39%), Positives = 205/361 (56%), Gaps = 21/361 (5%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY-- 136
I CK Y +PTP+Q AIP L D++ AQTGSGKTAAF PI++ + DQ
Sbjct: 166 IRRCK---YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERP 222
Query: 137 --------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
+A IL+PTRELA QI + GV+ GG + Q R+L R I
Sbjct: 223 RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRI---LNIIPTQGRTT 245
++ATPGRL D LE + +++ +++L +DEADR+LDM F P + +I +++ P R T
Sbjct: 283 LVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 341
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
LFSAT S+I +L ++N + AV + D + Q + V K + L+ LL+
Sbjct: 342 MLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHA- 400
Query: 306 IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
+TK A+ + N + EF AT++HGD Q +R AL FK G+ ILVATD
Sbjct: 401 ---QRETQDKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATD 457
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
VAARGLDIP V V+N+D+P D Y+HR+GRT RAG+SG + + ++ + +L + ++
Sbjct: 458 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAEL 517
Query: 426 L 426
+
Sbjct: 518 M 518
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 228 bits (581), Expect = 2e-59
Identities = 142/348 (40%), Positives = 195/348 (55%), Gaps = 6/348 (1%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-WHDQQP-YYACILAPT 144
Y PTPIQ K IP L G D++ +A+TGSGKTA F +P+ +L H Q A IL+PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPT 175
Query: 145 RELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTK 204
RELA Q + LG G+++ I+GG M DQ L P IIIATPGRL+ H+
Sbjct: 176 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEM 234
Query: 205 GFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASL 264
L+ ++Y+V DEADRL +M F L I+ +P G T LFSAT+ + + RA L
Sbjct: 235 SLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG-GHQTVLFSATLPKLLVEFARAGL 293
Query: 265 TNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS--TIVFTRTKANAER 322
T PV + + + L + +V K L++LL+ + T+VF TK +AE
Sbjct: 294 TEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAEY 353
Query: 323 ISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINY 382
++ L S ++ L+ R L F GK S L+ TD+AARGLDIP +D VINY
Sbjct: 354 LTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINY 413
Query: 383 DIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKL 430
P K ++HRVGR ARAGRSG + SLV+ ++ +L + LG+ L
Sbjct: 414 SFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSL 461
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 228 bits (581), Expect = 2e-59
Identities = 144/362 (39%), Positives = 204/362 (55%), Gaps = 23/362 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD-------------- 132
Y +PTP+Q AIP D++ AQTGSGKTAAF +PIL+Q++ D
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257
Query: 133 ----QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
+Q + +LAPTRELA QI E VR + GG + Q RDL R H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL--NIIPTQG-RTT 245
++ATPGRL+D +E K L KYLV+DEADR+LDM F P + RI+ + +P +G R T
Sbjct: 318 LVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 376
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
+FSAT +I L R L + AV T + + Q ++ V K +FL+ +L
Sbjct: 377 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGAT 436
Query: 306 IGKS-TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
S T+VF TK A+ + + ++ T++HGD +Q R AL F++GK ILVAT
Sbjct: 437 GSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 496
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
VAARGLDI +V VIN+D+P D + Y+HR+GRT R G G + S ++ ++ + + D
Sbjct: 497 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLD 556
Query: 425 VL 426
+L
Sbjct: 557 LL 558
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 228 bits (581), Expect = 2e-59
Identities = 148/423 (34%), Positives = 238/423 (55%), Gaps = 31/423 (7%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIP---ILNQLWHD 132
PEL+ + ++ PTPIQ+++ P A++G DI+ +A+TGSGKT + IP L ++ +D
Sbjct: 167 PELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRND 226
Query: 133 QQPYYAC-ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ +L+PTRELA QI+E G + TC+ GG Q RDL R I++A
Sbjct: 227 SRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGRL D LE + +LR++ YLV+DEADR+LDM F P + +I+ IPT+ R T +++AT
Sbjct: 287 TPGRLNDILEMRR-ISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK-RQTLMYTAT 344
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTFLIYLL-NEFIGK 308
+ K+ L NP + + N + V ++ Q + VV K L +L ++ G
Sbjct: 345 WPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGS 404
Query: 309 STIVFTRTKANAERISNLCNLL-EFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
I+F TK ++++ NL +F A A+HGD +Q +R L+ F++G+ +LVATDVA
Sbjct: 405 KVIIFCSTKRMCDQLTR--NLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL---ILRIED 424
ARGLD+ + V+NYD P + Y+HR+GRT RAG +G++ + D + +++I +
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 425 VLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGK------GRRGRMAT 478
+++P + +R+ + G + + +R RG+ G RG A+
Sbjct: 523 GANQRVPPQ---------IREMATRGGGG-MNKFSRWGPPSGGRGRGGDSGYGGRGSFAS 572
Query: 479 RDN 481
RD+
Sbjct: 573 RDS 575
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 227 bits (579), Expect = 3e-59
Identities = 144/408 (35%), Positives = 215/408 (52%), Gaps = 25/408 (6%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L + I +L Y KPT IQ++AIP G D+IG+A+TGSGKT AF +P+ + DQ
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI-KDQ 483
Query: 134 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
+P A I+ PTRELA QI L+ +R+ C GG + DQ DL R
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 188 IIIATPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
I++ TPGR++D L G NL + YLV+DEADR+ D+ F P + RI+N I R T
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPD-RQT 602
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
LFSAT ++ L R L PV+ V + + Q + V P K + L+ LL E
Sbjct: 603 VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL 662
Query: 306 IGKS----TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
T+VF + +A+ + + +++ ++HG +Q+ R + +KAG +L
Sbjct: 663 YNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVL 722
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
+AT V ARGLD+ S+ +V+NYD P + Y+HRVGRT RAG +G +++ ++ + +
Sbjct: 723 IATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVD 782
Query: 422 IEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARG 469
I L K+ K+ V K+ ++K + KEK A G
Sbjct: 783 IAKAL--KMSKQPVPKELQTLASQFLEKV---------KAGKEKAAGG 819
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 227 bits (579), Expect = 3e-59
Identities = 131/351 (37%), Positives = 198/351 (56%), Gaps = 11/351 (3%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L ++++ K LNY KP PIQ++A+P + G D IG+A+TGSGKT F +P+L + DQ
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQ 594
Query: 134 QPYYA------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
P A ++APTREL QQI +G+R + GG + Q +L R
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 188 IIIATPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
I++ TPGR++D L + G NLR++ +LVMDEADR+ DM F P + RI+ I + R T
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE-RQT 713
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
LFSAT +++ L R L PV+ V + + Q + V P + L+ LL E+
Sbjct: 714 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 773
Query: 306 IGKSTI-VFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
K I VF +++ + + + +LHG +Q R + FK ++L+AT
Sbjct: 774 SEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 833
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
VAARGLD+ +++V+N+D P + Y+HRVGRT RAGR G +++ +S+ D
Sbjct: 834 SVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 226 bits (577), Expect = 5e-59
Identities = 151/401 (37%), Positives = 220/401 (54%), Gaps = 34/401 (8%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY-------AC 139
+ KPT IQ++ P A+ G D++G+AQTGSGKT A+ +P + + + QP A
Sbjct: 170 FAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHI--NNQPRLERGDGPIAL 227
Query: 140 ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDH 199
+LAPTRELAQQI++ GS VR+TCI GG QARDL R I+IATPGRL+D
Sbjct: 228 VLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDF 287
Query: 200 LENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL 259
LE +L++ YLV+DEADR+LDM F P + +I+ I R ++SAT ++ +L
Sbjct: 288 LERGTT-SLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPD-RQVLMWSATWPKEVRQL 345
Query: 260 QRASLTNPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTFLIYLLNEFIGKS---TIVFTR 315
L N ++ + + + + ++Q + V K LI LL + ++ TI+F
Sbjct: 346 AEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVE 405
Query: 316 TKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPS 375
TK + I+ + + A A+HGD +Q +R L F+ G+ SILVATDVAARGLD+
Sbjct: 406 TKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDD 465
Query: 376 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENV 435
V VINYD P +S+ Y+HR+GRT R+ +G + +L + N
Sbjct: 466 VKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTH-----------------SNANK 508
Query: 436 DKDAILALRDSVDKANGEVV-MELN-RRNKEKQARGKGRRG 474
D I LR++ N +++ M +N NK G G RG
Sbjct: 509 ANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGMGGGYRG 549
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 226 bits (575), Expect = 8e-59
Identities = 135/368 (36%), Positives = 206/368 (55%), Gaps = 16/368 (4%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-----WHDQ 133
+E + L + KPTPIQ +AIP + G D+IG+A+TGSGKT AF +P+ + D
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDG 581
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATP 193
A I+APTREL QI + +G+R C+ GG + +Q +L R II+ TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641
Query: 194 GRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRIL-NIIPTQGRTTYLFSA 250
GR++D L G NLR++ Y+V+DEADR+ DM F P + RI+ N+ P R T +FSA
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPD--RQTVMFSA 699
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI-GKS 309
T +++ L R L P++ V + + Q ++++ K L+ LL + S
Sbjct: 700 TFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGS 759
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
IVF + NA+ + + +LHG ++Q R + FK+GK +L+AT VAAR
Sbjct: 760 IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAAR 819
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV----SQYDLELILRIEDV 425
GLD+ + +V+NYD+P + Y+HR GRT RAG+ G + + + S+Y + I+R D+
Sbjct: 820 GLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGD-IIRAMDL 878
Query: 426 LGKKLPKE 433
G +P E
Sbjct: 879 SGTLIPAE 886
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 224 bits (572), Expect = 2e-58
Identities = 143/415 (34%), Positives = 224/415 (53%), Gaps = 17/415 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
+++ K L + PTPIQ +A P A+ G D++G++ TGSGKT ++ +P + + + QP
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI--NAQPLL 190
Query: 138 A-------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+ +LAPTRELA QI++ G +R+TC+ GG+ Q RDL+R I I
Sbjct: 191 SPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICI 250
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D L++ K NLR++ YLV+DEADR+LDM F P + +I++ I R T +FSA
Sbjct: 251 ATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-RQTVMFSA 308
Query: 251 TMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI--- 306
T ++ +L R L + ++ V + + Q + VV K L + E +
Sbjct: 309 TWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDR 368
Query: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
++FT TK A+ I+ + A A+HGD Q++R L+ F+ GK I+VATDV
Sbjct: 369 DNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
A+RG+D+ + V NYD P +++ Y+HR+GRT RAG G + + + + + + +L
Sbjct: 429 ASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSIL 488
Query: 427 GKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDN 481
+ K+++D R S G R ++ G G R R T N
Sbjct: 489 SE--AKQDIDPKLEEMARYSSGGRGGNYRRGGYGRGGFRRGGGYGNRNRGFTGSN 541
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 224 bits (570), Expect = 3e-58
Identities = 142/355 (40%), Positives = 201/355 (56%), Gaps = 23/355 (6%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW----- 130
P ++E Y+KPTP+Q +IP L D++ AQTGSGKTAAF +PI+ +
Sbjct: 132 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 191
Query: 131 --------HDQQPYYAC--ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGM-SMMDQA 179
+ ++ YY C +L+PTRELA QI + +++ + GG + DQ
Sbjct: 192 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQV 251
Query: 180 RDLMRKPHIIIATPGRLMDHLENTKGF-NLRKLKYLVMDEADRLLDMEFGPVLDRILN-- 236
L HI+IATPGRL+D +E +GF L +YLV+DEADR+LDM F P + +I+
Sbjct: 252 NRLRAGTHILIATPGRLIDIIE--QGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQG 309
Query: 237 IIPTQGRTTYLFSATMTSKIDKLQRASLT-NPVKCAVSNKYQTVDTLVQTLMVVPGGLKN 295
+ P RTT +FSAT +I L + L N + AV T + + Q L+ V K
Sbjct: 310 MPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKR 369
Query: 296 TFLI-YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFK 354
+ L+ L+NE +VF TK A ++ N + + ++HGDL Q +R L+LF+
Sbjct: 370 SNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFR 429
Query: 355 AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
+G+ ILVAT VAARGLDIP+V VINYD+P DS Y+HR+GRT R G G + S
Sbjct: 430 SGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 484
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 224 bits (570), Expect = 3e-58
Identities = 142/355 (40%), Positives = 201/355 (56%), Gaps = 23/355 (6%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW----- 130
P ++E Y+KPTP+Q +IP L D++ AQTGSGKTAAF +PI+ +
Sbjct: 129 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 188
Query: 131 --------HDQQPYYAC--ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGM-SMMDQA 179
+ ++ YY C +L+PTRELA QI + +++ + GG + DQ
Sbjct: 189 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQV 248
Query: 180 RDLMRKPHIIIATPGRLMDHLENTKGF-NLRKLKYLVMDEADRLLDMEFGPVLDRILN-- 236
L HI+IATPGRL+D +E +GF L +YLV+DEADR+LDM F P + +I+
Sbjct: 249 NRLRAGTHILIATPGRLIDIIE--QGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQG 306
Query: 237 IIPTQGRTTYLFSATMTSKIDKLQRASLT-NPVKCAVSNKYQTVDTLVQTLMVVPGGLKN 295
+ P RTT +FSAT +I L + L N + AV T + + Q L+ V K
Sbjct: 307 MPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKR 366
Query: 296 TFLI-YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFK 354
+ L+ L+NE +VF TK A ++ N + + ++HGDL Q +R L+LF+
Sbjct: 367 SNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFR 426
Query: 355 AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
+G+ ILVAT VAARGLDIP+V VINYD+P DS Y+HR+GRT R G G + S
Sbjct: 427 SGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 481
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 223 bits (569), Expect = 4e-58
Identities = 133/347 (38%), Positives = 191/347 (54%), Gaps = 8/347 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-- 129
L L ++A + + + T +Q++ IPP L G D++G A+TGSGKT AF IP + L
Sbjct: 47 LKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHS 106
Query: 130 --WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
+ + ++ PTRELA QI L ++GG + +A LM+ +
Sbjct: 107 LKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVN 166
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
++IATPGRL+DHL+NTKGF + LK L++DEADR+L++ F + +I+ I+P + R + L
Sbjct: 167 MLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSML 226
Query: 248 FSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
FSAT T+K++ L R SL + T D L Q +V + L L
Sbjct: 227 FSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKR 286
Query: 305 FIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
K IVF + + + + L N ++ LHG Q +RT F +R IL+ T
Sbjct: 287 NQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICT 346
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 411
DVAARGLDIP+VD +I +D P D + YIHRVGRTAR G GK SL+
Sbjct: 347 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLM 392
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 222 bits (566), Expect = 9e-58
Identities = 151/413 (36%), Positives = 230/413 (55%), Gaps = 23/413 (5%)
Query: 86 NYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY-------A 138
N+ +PT IQ++ P AL G D++G+AQTGSGKT ++ +P + + H QP+
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH--QPFLERGDGPIC 170
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
+LAPTRELAQQ+++ ++STCI GG Q RDL R I IATPGRL+D
Sbjct: 171 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 199 HLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDK 258
LE K NLR+ YLV+DEADR+LDM F P + +I++ I R T ++SAT ++ +
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-RQTLMWSATWPKEVRQ 288
Query: 259 LQRASLTNPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTFLIYLLNEFIGKS---TIVFT 314
L L + + + + + ++Q + V K+ LI L+ E + + TIVF
Sbjct: 289 LAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 315 RTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIP 374
TK + ++ + A +HGD +Q +R L+ FK GK IL+ATDVA+RGLD+
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 375 SVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKEN 434
V VINYD P S+ YIHR+GRTAR+ ++G + + + +++ + + VL + N
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
Query: 435 VDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMAT---RDNMDR 484
++ R S ++ G M+ +RR++ G+RG T R+N DR
Sbjct: 469 PKLLQLVEDRGS-GRSRGRGGMKDDRRDR----YSAGKRGGFNTFRDRENYDR 516
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 222 bits (565), Expect = 1e-57
Identities = 134/340 (39%), Positives = 194/340 (56%), Gaps = 11/340 (3%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
E++ + +++PT IQ + P AL G D++G+AQTGSGKT +F +P L DQQP
Sbjct: 97 EVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHA-KDQQPL 155
Query: 137 ------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+LAPTREL QIK+ D + +RST + GG S Q R L ++I
Sbjct: 156 RRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVI 215
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D L + L ++ +LV+DEADR+LDM F P L +I+ R T ++SA
Sbjct: 216 ATPGRLID-LHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKT-NANRQTLMWSA 273
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNK-YQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T ++ L + + ++ V N+ +T + Q + V G K LI +L+ F G
Sbjct: 274 TWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDK 333
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
IVF K + + + N + A ALHGD +QN R LD F++G+R IL+AT+VA R
Sbjct: 334 VIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGR 393
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
GLD+ V +VIN+D P + Y+HR+GRTAR G + + IS
Sbjct: 394 GLDVNDVKLVINFDFPGSCEDYVHRIGRTAR-GNTKEGIS 432
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 221 bits (564), Expect = 1e-57
Identities = 140/378 (37%), Positives = 209/378 (55%), Gaps = 23/378 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW---HDQQPYYACILA- 142
+ KPT IQS + P A+ G DII +A+TGSGKT AF +P L + H Q+ +L
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 143 -PTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLE 201
PTRELAQQ++E +G++ TC+ GG S QARDL R I++ATPGRL+D L+
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLD 268
Query: 202 NTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQR 261
N N++K YLV+DEADR+LDM F P + +I+ I R T +FSAT ++ L
Sbjct: 269 NGTT-NMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPD-RQTLMFSATWPKEVRALAS 326
Query: 262 ASLTNPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTFLIYLLNEFIGKS---TIVFTRTK 317
+ V + + + Q + ++ K L+ LLN + + TI+F TK
Sbjct: 327 DFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETK 386
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
A+ ++ + +HGD NQ +R L FKAGK I++ATDVAARGLD+ +
Sbjct: 387 RKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIK 446
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL---ILRIEDVLGKKLPKEN 434
VINYD P +S+ Y+HR+GRT R+ + G + + + + +L++ D + +P+
Sbjct: 447 FVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQ-- 504
Query: 435 VDKDAILALRDSVDKANG 452
ALRD +++ G
Sbjct: 505 -------ALRDMANRSYG 515
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 220 bits (560), Expect = 4e-57
Identities = 148/425 (34%), Positives = 223/425 (51%), Gaps = 46/425 (10%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
L++ K Y +PTP+Q +IP G D++ AQTGSGKTA F PIL+ L D+ P
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS-LAFDKGPAA 238
Query: 138 A-------------------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQ 178
ILAPTREL QI E VR + GG + Q
Sbjct: 239 VPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Query: 179 ARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL--- 235
R + + ++ ATPGRL+D ++ + +L +K+LV+DEADR+LDM F P + I+
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGA 357
Query: 236 NIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKN 295
++ + R T +FSAT I L R L + V +V T + + Q ++ V K
Sbjct: 358 DMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKR 417
Query: 296 TFLIYLLNEFIGKS-TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFK 354
++L+ +L+ + T++F TK A+ +++ F AT++HGD Q +R AL+LF+
Sbjct: 418 SYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFR 477
Query: 355 AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQY 414
+G+ SI+VAT VA+RGLDIP+V VINYD+P D Y+HR+GRT RAG +G++++ ++
Sbjct: 478 SGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRN 537
Query: 415 DLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRG 474
+ K + KE L + + +AN E L +E G GR G
Sbjct: 538 N------------KGIAKE---------LIELLQEANQECPSFLIAMARESSFGGNGRGG 576
Query: 475 RMATR 479
R + R
Sbjct: 577 RYSGR 581
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 220 bits (560), Expect = 4e-57
Identities = 144/411 (35%), Positives = 217/411 (52%), Gaps = 27/411 (6%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+++ K Y+KPT IQ++AIP + G D+IG+A+TGSGKT AF +P+ + +
Sbjct: 314 KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELE 373
Query: 137 -----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A ILAPTRELA Q + + +G++ C GG+ + +Q DL R I++
Sbjct: 374 EGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVC 433
Query: 192 TPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
TPGR++D L G NLR++ YLV+DEADR+ D F P + +++N I + T LFS
Sbjct: 434 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPD-KQTVLFS 492
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK- 308
AT ++ L R L PV+ V K + Q ++ K L+ LL + +
Sbjct: 493 ATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEG 552
Query: 309 STIVFTRTKANAERISNLCNLLEFSATA-LHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
S+IVF + A+ I + +++ A LHG ++Q+ R ++ FK G +LVAT VA
Sbjct: 553 SSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVA 612
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL----ILRIE 423
ARGLD+ ++ +V+NYD P + Y+HRVGRT RAGR G + + V E I R
Sbjct: 613 ARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAF 672
Query: 424 DVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRG 474
+ G K P + L+ ++ E+ E KE + GKG G
Sbjct: 673 ETAGCKPPAD---------LKAMFERFKSEMAAE----GKEVKLGGKGFEG 710
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 220 bits (560), Expect = 4e-57
Identities = 144/411 (35%), Positives = 217/411 (52%), Gaps = 27/411 (6%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+++ K Y+KPT IQ++AIP + G D+IG+A+TGSGKT AF +P+ + +
Sbjct: 314 KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELE 373
Query: 137 -----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A ILAPTRELA Q + + +G++ C GG+ + +Q DL R I++
Sbjct: 374 EGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVC 433
Query: 192 TPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
TPGR++D L G NLR++ YLV+DEADR+ D F P + +++N I + T LFS
Sbjct: 434 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPD-KQTVLFS 492
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK- 308
AT ++ L R L PV+ V K + Q ++ K L+ LL + +
Sbjct: 493 ATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEG 552
Query: 309 STIVFTRTKANAERISNLCNLLEFSATA-LHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
S+IVF + A+ I + +++ A LHG ++Q+ R ++ FK G +LVAT VA
Sbjct: 553 SSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVA 612
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL----ILRIE 423
ARGLD+ ++ +V+NYD P + Y+HRVGRT RAGR G + + V E I R
Sbjct: 613 ARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAF 672
Query: 424 DVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRG 474
+ G K P + L+ ++ E+ E KE + GKG G
Sbjct: 673 ETAGCKPPAD---------LKAMFERFKSEMAAE----GKEVKLGGKGFEG 710
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 219 bits (557), Expect = 9e-57
Identities = 138/378 (36%), Positives = 214/378 (56%), Gaps = 24/378 (6%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
++ K ++KPT IQ + P AL G D++G+A TGSGKT ++ +P + + + QP
Sbjct: 124 VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHI--NAQPLL 181
Query: 138 A-------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
A +LAPTRELA QI+ G +R+TC+ GG+ Q RDL R I+I
Sbjct: 182 APGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVI 241
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
ATPGRL+D LE K NL+++ YLV+DEADR+LDM F P + +I++ I R T ++SA
Sbjct: 242 ATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD-RQTLMWSA 299
Query: 251 TMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGGLKNTFLIYLL------N 303
T ++ +L L +P++ V + + + Q + VV K L L N
Sbjct: 300 TWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDN 359
Query: 304 EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
E+ T++F TK + I+ + A A+HGD +Q +R L F+ G+ I+VA
Sbjct: 360 EY---KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVA 416
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
TDVAARG+D+ ++ VINYD+P + + Y+HR+GRT RAG +G +IS ++ + L ++
Sbjct: 417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLI 476
Query: 424 DVL---GKKLPKENVDKD 438
++ + +P E + D
Sbjct: 477 SIMREANQNIPPELLKYD 494
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 219 bits (557), Expect = 9e-57
Identities = 141/385 (36%), Positives = 207/385 (53%), Gaps = 29/385 (7%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PE++ + ++KP PIQS IP A G DIIG A TGSGKT AF IPIL +
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 134 QPYY--ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
Y A ++APTRELA QI + F+ + +R I GG+++ Q R L + PH+++A
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVA 248
Query: 192 TPGRLMDHL-ENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT---TYL 247
TPGRL + EN N +K+K LV+DEADRLL L ++L I+ T T++
Sbjct: 249 TPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFI 308
Query: 248 FSAT----MTSKIDKLQRASLTNPVKCAVSNKYQTV------------------DTLVQT 285
FSAT + ++ K + ++T + N + V +++
Sbjct: 309 FSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEG 368
Query: 286 LMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQ 345
L+ K+ +L YL+ + GK T+VF + +RI+ N L+ + LH L+Q +
Sbjct: 369 LIECAPAEKDLYLYYLIMRYPGK-TMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKK 427
Query: 346 RTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
R +L+ FK + +LV TDVAARG+DIPSV VI+Y +P + Y+HR GRTARA G
Sbjct: 428 RLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDG 487
Query: 406 KSISLVSQYDLELILRIEDVLGKKL 430
SI + +L + R+ L KK+
Sbjct: 488 VSILMCGPKELSQLKRLCYRLKKKI 512
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 219 bits (557), Expect = 9e-57
Identities = 151/448 (33%), Positives = 216/448 (47%), Gaps = 45/448 (10%)
Query: 26 ALEKQQQAHANE-PSPSDEDSAQ---SNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEA 81
A + Q+ H N + SDED S + + L L+ A
Sbjct: 24 ATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRA 83
Query: 82 CKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD--QQPYYAC 139
+ PTPIQ K IP L+G D++G+A+TGSGKTAAF IP++ L A
Sbjct: 84 IFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRAL 143
Query: 140 ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDH 199
IL+P RELA Q + +RS IVGG+S+ +Q L KP I++ATPGR + H
Sbjct: 144 ILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-H 202
Query: 200 LENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL 259
L+ L ++Y+V DEADRL +M F L IL+ +PT R T LFSAT+ +
Sbjct: 203 LKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPT-SRQTLLFSATLPRTLVDF 261
Query: 260 QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI------------- 306
+A L +PV + + + L V + L+ +L + I
Sbjct: 262 AKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREI 321
Query: 307 ------------------------GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLN 342
ST+VF TK + E +S L +S + ++G L+
Sbjct: 322 GNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLD 381
Query: 343 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
Q R ++ F+ GK ++LV TDVA+RG+DIP + VINYD P K ++HRVGRTARAG
Sbjct: 382 QEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAG 441
Query: 403 RSGKSISLVSQYDLELILRIEDVLGKKL 430
R+G + SLV D +L ++ L + L
Sbjct: 442 RTGWAYSLVRAEDAGYLLDLQLFLNRPL 469
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 219 bits (557), Expect = 9e-57
Identities = 156/427 (36%), Positives = 220/427 (50%), Gaps = 28/427 (6%)
Query: 38 PSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEA--CKNLN-------YN 88
P P DEDS ++ + + EA C+ LN Y
Sbjct: 250 PPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 309
Query: 89 KPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD----------QQPYYA 138
K TP+Q +IP L G D++ AQTGSGKTAAF +PIL + HD Q+P
Sbjct: 310 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE-C 368
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
I+APTREL QI VR+ I GG + R +++ +I+ ATPGRLMD
Sbjct: 369 IIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMD 428
Query: 199 HLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNI--IPT-QGRTTYLFSATMTSK 255
+ K L+++KYLV+DEADR+LDM FGP + ++++ +P+ + R T +FSAT +
Sbjct: 429 IIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEE 487
Query: 256 IDKLQRASL-TNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFT 314
I +L L +N + AV + QT++ V K L+ +L + T+VF
Sbjct: 488 IQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFV 547
Query: 315 RTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIP 374
TK A+ I+ + S T++HGD Q +R AL F+ GK +LVAT VAARGLDI
Sbjct: 548 ETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIE 607
Query: 375 SVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKEN 434
+V VIN+D+P Y+HR+GRT R G +G++IS +DLE + L K L
Sbjct: 608 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF---FDLESDNHLAQPLVKVLTDAQ 664
Query: 435 VDKDAIL 441
D A L
Sbjct: 665 QDVPAWL 671
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 219 bits (557), Expect = 9e-57
Identities = 131/349 (37%), Positives = 197/349 (55%), Gaps = 10/349 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH-- 131
L PE++ + + PTPIQ++ P AL+ DI+ +A+TGSGKT + IP L H
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCR 501
Query: 132 --DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
+ ILAPTRELA QI++ G + TC+ GG Q ++L R I+
Sbjct: 502 NDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIV 561
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
+ATPGRL D LE K + +++ LV+DEADR+LDM F P + +I+N IP + R T +++
Sbjct: 562 VATPGRLNDILE-MKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR-RQTLMYT 619
Query: 250 ATMTSKIDKLQRASLTNPVKCAVS--NKYQTVDTLVQTLMVVPGGLKNTFLIYLL-NEFI 306
AT ++ K+ L NPV+ + ++ + Q + VVP K L +L ++
Sbjct: 620 ATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQER 679
Query: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
G I+F TK + ++ F A +HGD Q +R L+ F++GK +L+ATDV
Sbjct: 680 GSKVIIFCSTKRLCDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDV 738
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
AARGLDI + +VINYD P + Y+HR+GRT RAG +G + + ++ D
Sbjct: 739 AARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 218 bits (555), Expect = 2e-56
Identities = 135/362 (37%), Positives = 207/362 (56%), Gaps = 17/362 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
+++ + Y PT IQ++ P A+ GS+ +G+A+TGSGKT + +P + + ++QQP
Sbjct: 150 VMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHI-NNQQPLQ 208
Query: 138 ------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A +LAPTRELAQQI++ GS VR+TC+ GG Q RDL R I+IA
Sbjct: 209 RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIA 268
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGRL+D L + NL++ YLV+DEADR+LDM F P + +I++ I R T ++SAT
Sbjct: 269 TPGRLIDFL-SAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPD-RQTLMWSAT 326
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKN-----TFL--IYLLNE 304
++ +L L N ++ + + + + ++ ++ V T L IY +E
Sbjct: 327 WPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSE 386
Query: 305 FIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
GK I+F TK + + A+HGD +Q++R L F++GK +ILVAT
Sbjct: 387 SPGK-IIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVAT 445
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
DVAARGLD+ + VIN+D P +S+ YIHR+GRT R+ G S + ++ + + + D
Sbjct: 446 DVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVD 505
Query: 425 VL 426
VL
Sbjct: 506 VL 507
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 217 bits (552), Expect = 4e-56
Identities = 136/367 (37%), Positives = 217/367 (59%), Gaps = 14/367 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW- 130
L + PE+++A + K PIQ + PA++G D+IG A+TG+GKT AF IPI++++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 131 ----HDQQPYYAC-ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
H + C +LAPTRELA+Q+++ F S + + C+ GG + Q R L
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYG 226
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
+ + TPGR++D L NL +++++V+DEAD++L + F ++ IL +P + R +
Sbjct: 227 VDVAVGTPGRVID-LMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK-RQS 284
Query: 246 YLFSATMTSKIDKLQRASLTNPVKC-AVSNKYQTVDTLVQTLMVVPGGLKNTFLIY-LLN 303
+FSATM S I L + L NP+ V + Q + + T ++ +I L+
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 304 EFI-GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
E G IVFT+TK +A+R+S F ALHGD++Q+QR L F+ G +ILV
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILV 403
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 422
ATDVAARGLD+P+VD++I+Y++P ++++++HR GRT RAG+ G +I + SQ + I
Sbjct: 404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463
Query: 423 EDVLGKK 429
E +G +
Sbjct: 464 EREVGSR 470
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 216 bits (551), Expect = 5e-56
Identities = 131/391 (33%), Positives = 212/391 (53%), Gaps = 17/391 (4%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ--- 133
+++ + K Y KPTPIQ++AIP + G D+IG+A+TGSGKT AF +P+ + +
Sbjct: 382 KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 134 --QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A I+ PTRELA QI + +G+R C+ GG + +Q +L R II+
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501
Query: 192 TPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRIL-NIIPTQGRTTYLF 248
TPGR++D L G NLR++ Y+V+DEADR+ DM F P + RI+ N+ P R T +F
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD--RQTVMF 559
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK 308
SAT ++ L R L+ P++ V + + Q ++V+ K L+ LL +
Sbjct: 560 SATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQES 619
Query: 309 -STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
S I+F + +A+ + + +LHG ++Q R ++ FK G +LVAT VA
Sbjct: 620 GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVA 679
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL---ILRIED 424
ARGLD+ + +V+NY P + Y+HR GRT RAG G + + +++ I++ +
Sbjct: 680 ARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALE 739
Query: 425 VLGKKLPKENVDKDAILALRDSVDKANGEVV 455
+ G +P D + + + KA G+++
Sbjct: 740 LSGTAVPP---DLEKLWSDFKDQQKAEGKII 767
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 215 bits (547), Expect = 1e-55
Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L EL+ + KP+ IQ +AI P G D+I AQ+G+GKTA F++ IL ++ H
Sbjct: 34 MELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDH 93
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A ++APTRELAQQI++ +LG + V +GG S+ D R L H+++
Sbjct: 94 EDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVG 153
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + N + ++K V+DEAD +L F + + +P Q L SAT
Sbjct: 154 TPGRVGDMI-NRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP-QDVQVVLLSAT 211
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQ-TLMVVPGGLKNTFLIYLLNEFIGKST 310
M S++ + + NP++ V T++ + Q + V K L L N
Sbjct: 212 MPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQA 271
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + ++ +F+ + LHGD++Q +R + F++G +L+ TD+ ARG
Sbjct: 272 VIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARG 331
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR+ R GR G +I+ V++ D + IE
Sbjct: 332 IDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 215 bits (547), Expect = 1e-55
Identities = 135/367 (36%), Positives = 214/367 (57%), Gaps = 14/367 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW- 130
L + PE+++A K K PIQ + PA++G D+IG A+TG+GKT AF IPI++++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 131 ----HDQQPYYAC-ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
H + C +LAPTRELA+Q+++ F S + + C+ GG + Q R+L
Sbjct: 181 FNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRELNYG 238
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
+ + TPGR++D L NL +++++V+DEAD++L + F ++ IL +P + R +
Sbjct: 239 IDVAVGTPGRIID-LMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAK-RQS 296
Query: 246 YLFSATMTSKIDKLQRASLTNPVKC-AVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
+FSATM S I L + L NP+ V + Q + + + +I L +
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 305 FIGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
GK IVFT+TK +A+R++ + ALHGD++Q QR L F+ G SILV
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLA-FGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILV 415
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 422
ATDVAARGLD+P+VD+VI+Y++P ++++++HR GRT RAG+ G +I + Q + I
Sbjct: 416 ATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMI 475
Query: 423 EDVLGKK 429
E +G +
Sbjct: 476 EKEVGSR 482
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 214 bits (546), Expect = 2e-55
Identities = 152/452 (33%), Positives = 232/452 (50%), Gaps = 18/452 (3%)
Query: 1 MAKIEKKQAVKNNQVLSLAEKIK--RKALEKQQQAHANEP---SPSDEDSAQSNSKDXXX 55
M KI+K + ++ L+ E+I ++ +E Q+ P P +DS S+D
Sbjct: 1 MVKIKKTKGMRKQIRLNEVEEINLLKQWIESQKPDSGFNPLSLRPLPKDSKIGKSEDGKN 60
Query: 56 XXXXXXXXXXXXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGS 115
L + + K+ Y T +QS AIP AL G DI+G A+TGS
Sbjct: 61 GTVFSRYAGVRKFAQ-LPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGS 119
Query: 116 GKTAAFAIPILNQL----WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVG 171
GKT AF IPIL +L W + I++PTRELA Q + +G + ++G
Sbjct: 120 GKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIG 179
Query: 172 GMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVL 231
G +D ++ + + +I++ PGRL+ H++ T F +L+ L++DEADR+LD F L
Sbjct: 180 GREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQL 239
Query: 232 DRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVV 289
D I++ +P + R T LFSAT T K+ L R SL +P +V + T +L+QT+M+V
Sbjct: 240 DPIISQLP-KHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIV 298
Query: 290 PGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLE--FSATALHGDLNQNQRT 347
P K L + + +VF TK + + N L +LHG ++Q +R
Sbjct: 299 PVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRM 358
Query: 348 GALDLFKAGKRSILVATDVAARGLDI-PSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 406
G F ++S+L TDV ARGLD +VD V+ D P D SYIHRVGRTAR GK
Sbjct: 359 GVYSQF-IERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGK 417
Query: 407 SISLVSQYDLELILRIEDV-LGKKLPKENVDK 437
S+ ++ + ++I ++++ + KL K N K
Sbjct: 418 SLLFLTPSEEKMIEKLQEAKVPIKLIKANNQK 449
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 214 bits (545), Expect = 2e-55
Identities = 142/405 (35%), Positives = 218/405 (53%), Gaps = 18/405 (4%)
Query: 23 KRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEAC 82
K K L + +A +P+ DE +S + + A
Sbjct: 129 KTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEAT---LRAI 185
Query: 83 KNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIP---ILNQL-WHDQQPYYA 138
K + + + T IQSK++ P LKG D++G AQTGSGKT AF IP ++N+L + +
Sbjct: 186 KEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGV 245
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTC---IVGGMSMMDQARDLMRKPHIIIATPGR 195
I++PTREL+ Q TF L LM ++GG + ++ L + +I++ATPGR
Sbjct: 246 IIISPTRELSMQ---TFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGR 302
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
L+DHL+N+ F + L+ L++DE DR+L++ F L +I+N++P + R T LFSAT T++
Sbjct: 303 LLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR-RQTMLFSATQTAR 361
Query: 256 IDKLQRASL-TNPVKCAVSNKYQT--VDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIV 312
I+ L + +L + P+ V + T VD L Q +V P + L L + K +V
Sbjct: 362 IEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMV 421
Query: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372
F + + + L N ++ T++HG Q +RT F + IL+ TDVAARGLD
Sbjct: 422 FFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLD 481
Query: 373 IPSVDIVINYDIPVDSKSYIHRVGRTAR-AGRSGKSISLVSQYDL 416
IP VD ++ YD P D + YIHRVGRTAR +G SG ++ L+ +L
Sbjct: 482 IPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEEL 526
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 214 bits (544), Expect = 3e-55
Identities = 156/437 (35%), Positives = 229/437 (51%), Gaps = 26/437 (5%)
Query: 3 KIEKKQAVKNNQVLSLAEKIKRKALEKQQQAHANEPSPSD---EDSAQSNSKDXXXXXXX 59
K +K++ V + + + K + K +++ A + + ++ D+ + S+
Sbjct: 111 KKKKRKMVNDAEPDTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDESEVPSLPLGL 170
Query: 60 XXXXXXXXXXXXLDLVPE-LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKT 118
+LV E ++A K + + T IQ K+I P L+G D++ A+TGSGKT
Sbjct: 171 TGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKT 230
Query: 119 AAFAIP----ILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTC---IVG 171
AF IP I+ + + IL+PTRELA Q TF L LM I+G
Sbjct: 231 LAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQ---TFGVLKELMTHHVHTYGLIMG 287
Query: 172 GMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVL 231
G + +A+ L +II+ATPGRL+DH++NT GF + L+ LV+DEADR+LD+ F L
Sbjct: 288 GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 347
Query: 232 DRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTN-PVKCAVSNKYQ--TVDTLVQTLMV 288
+I+ ++PT+ R T LFSAT T K++ L R SL P+ V + TVD L Q +V
Sbjct: 348 KQIIKLLPTR-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVV 406
Query: 289 VPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTG 348
P + L L + K +VF + + + L N ++ A+HG QN+RT
Sbjct: 407 CPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTT 466
Query: 349 ALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
F L+ TDVAARGLDIP VD ++ YD P D K YIHRVGRTAR G +G+
Sbjct: 467 TFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGH 525
Query: 409 SLVSQYDLELILRIEDV 425
+L LILR E++
Sbjct: 526 AL-------LILRPEEL 535
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 213 bits (541), Expect = 7e-55
Identities = 138/373 (36%), Positives = 194/373 (51%), Gaps = 13/373 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-- 129
L L A KN ++ T IQ + IP ALKG DI+G A+TGSGKT AF +P++ L
Sbjct: 44 LPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYR 103
Query: 130 --WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
W A +++PTRELA Q ET +G L + I+GG + ++ L R +
Sbjct: 104 KKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-N 162
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
I++ TPGRL+ H++ F+ L+ L++DEADR+LDM F LD I++ +P R T L
Sbjct: 163 ILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVH-RQTML 221
Query: 248 FSATMTSKIDKLQRASLTNPVKCAV--SNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
FSAT T + L R SL NP +V ++ T L Q + VP K L +
Sbjct: 222 FSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTH 281
Query: 306 IGKSTIVFTRTKANAERISNLCNLLE--FSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
+ TIVF + + + S LHG Q RT F + + +L
Sbjct: 282 LKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFC 341
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
TD+ ARGLD P+VD VI D P D +YIHRVGRTAR RSG ++ L+ + + R+E
Sbjct: 342 TDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLE 401
Query: 424 DVLGKKLPKENVD 436
KK+ E ++
Sbjct: 402 ---SKKIAVERIN 411
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 213 bits (541), Expect = 7e-55
Identities = 128/358 (35%), Positives = 213/358 (58%), Gaps = 15/358 (4%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIP---ILNQLWHDQQPYYAC-ILA 142
++ P+PIQ+++ P A++ DI+ +A+TGSGKT + IP L ++ +D + +L+
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLS 308
Query: 143 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLEN 202
PTRELA QI+ G + C+ GG Q +++ R I++ATPGRL D LE
Sbjct: 309 PTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILE- 367
Query: 203 TKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRA 262
K +L ++ YLV+DEADR+LDM F P + +I+N +PT+ R T +++AT ++ K+
Sbjct: 368 MKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK-RQTLMYTATWPKEVRKIAAD 426
Query: 263 SLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTFLIYLL-NEFIGKSTIVFTRTKAN 319
L NP + + N + V ++ QT+ V+ K++ L +L ++ G I+F TK
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRM 486
Query: 320 AERISNLCNLLE-FSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDI 378
++++ NL F A A+HGD +Q +R L+ F++G+ +LVATDVAARGLD+ + +
Sbjct: 487 CDQLAR--NLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRV 544
Query: 379 VINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL---ILRIEDVLGKKLPKE 433
V+NYD P + Y+HR+GRT RAG +G + + D + +++I + +K+P +
Sbjct: 545 VVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 213 bits (541), Expect = 7e-55
Identities = 135/356 (37%), Positives = 195/356 (53%), Gaps = 6/356 (1%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ--Q 134
ELI+ Y PTPIQ K IP L+G D++ +A+TGSGKTA F IP+ +L + +
Sbjct: 105 ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTK 164
Query: 135 PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
A IL+PTRELA Q + LG M ++S ++GG SM Q + P +I+ATPG
Sbjct: 165 GARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPG 224
Query: 195 RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTS 254
R + HL L ++Y+V DEADRL +M FG L+ L+ +P+ R T +FSAT+
Sbjct: 225 RFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSS-RQTVMFSATLPK 282
Query: 255 KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG--KSTIV 312
+ + RA L +PV + + + D L + + T L+ LL I T+V
Sbjct: 283 LLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVV 342
Query: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372
F T+ + E IS + S +++ L+ R F K S+L+ TDVAARG+D
Sbjct: 343 FAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGID 402
Query: 373 IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGK 428
IPS+D V+N P K ++HRVGR ARAGR+G + S+VS D +L + L +
Sbjct: 403 IPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNR 458
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 212 bits (540), Expect = 9e-55
Identities = 124/356 (34%), Positives = 202/356 (55%), Gaps = 8/356 (2%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L+ + KP+ IQ +AI P +KG D+I AQ+G+GKTA FAI IL Q+
Sbjct: 37 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 96
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL-MRKPHIII 190
D + A +LAPTRELAQQI++ +LG MG +GG ++ + + L M PHII+
Sbjct: 97 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 156
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT--YLF 248
TPGR+ D L N + + + +K V+DEAD +L F D+I +I T L
Sbjct: 157 GTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGF---KDQIYDIFQKLNSNTQVVLL 212
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQ-TLMVVPGGLKNTFLIYLLNEFIG 307
SATM S + ++ + + +P++ V + T++ + Q + V K L L
Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
++F T+ + ++ + +F+ +A+HGD++Q +R + F++G +L+ TD+
Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
ARG+D+ V +VINYD+P + ++YIHR+GR R GR G +I++V++ D + IE
Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 212 bits (540), Expect = 9e-55
Identities = 157/460 (34%), Positives = 224/460 (48%), Gaps = 65/460 (14%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGK-------------- 117
L+L L+ AC+ L Y KPTPIQ + IP + D+ A TGSGK
Sbjct: 172 LNLSRPLLRACETLGYKKPTPIQVQFIPQEWR--DLCASAITGSGKVSTRLMVLCNTEIL 229
Query: 118 ------TAAFAIPILNQLWHDQQPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTC 168
TAAFA+P L +L + +A IL PTRELA QI +L ++
Sbjct: 230 FRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGL 289
Query: 169 IVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFG 228
IVGG+S+ +Q L P I++ATPGR++DHL N+ +L L L++DEADRLL F
Sbjct: 290 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFA 349
Query: 229 PVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMV 288
+ ++ + P + R T LFSATMT ++ +L + SL P++ + +
Sbjct: 350 TEITELVRLCPKR-RQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARR---------- 398
Query: 289 VPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTG 348
P GL + L EF S + TK A R+ L L A LHG+L Q QR
Sbjct: 399 -PPGLTEEY----LREFFVPSCA--SGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLD 451
Query: 349 ----------ALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRT 398
+L+LF+ + L+ATDVAARGLDI V VINY P + SY+HRVGRT
Sbjct: 452 VRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRT 511
Query: 399 ARAGRSGKSISLVSQYDLEL--ILRIEDVL---------GKKLPKENVDKDAILALRDSV 447
ARAGR G +++ V+ D L ++ E L G KL + + +I+ +
Sbjct: 512 ARAGREGYAVTFVTDSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKWSQII 571
Query: 448 DKANGEVVMELN-RRNKEKQARGKGRRGRMATRDNMDREE 486
D+ + ++ R ++ G G +A R+E
Sbjct: 572 DEMEDQYSAVISAERFHSHSSKNYGIPGELAENMLEHRDE 611
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 212 bits (539), Expect = 1e-54
Identities = 139/371 (37%), Positives = 208/371 (55%), Gaps = 14/371 (3%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIP------ILNQL 129
PE++E K + KPTPIQS+A P L+G D+IG+AQTG+GKT + +P + L
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
+ +L PTRELA Q++ S G+RS C+ GG + +Q +L + II
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKY-SYKGLRSVCVYGGGNRDEQIEELKKGVDII 369
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
IATPGRL D L+ + NL+ + YLV+DEAD++LDM F P + +IL + R T + S
Sbjct: 370 IATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQTVMTS 427
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK 308
AT + +L ++ L P+ V V ++ Q ++V K + + L
Sbjct: 428 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSST 487
Query: 309 S-TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
IVF KA A+ +S+ L S +LHGD Q R AL+ FK GK IL+ATD+A
Sbjct: 488 DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLA 547
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL- 426
+RGLD+ V V N+D P + + Y+HR+GRT RAGR+G SI+ +++ D + + ++L
Sbjct: 548 SRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILE 607
Query: 427 --GKKLPKENV 435
+ +P+E V
Sbjct: 608 RANQSIPEELV 618
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 211 bits (536), Expect = 3e-54
Identities = 143/429 (33%), Positives = 218/429 (50%), Gaps = 52/429 (12%)
Query: 1 MAKIEKKQAVKNNQVLSLAE--KIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXX 58
M +++K +A K LSL + KI+ + K + S +D+ + K+
Sbjct: 332 MKRVKKTKAEK----LSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVH 387
Query: 59 XXXXXXXXXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKT 118
L ++++ K LNY KP PIQ++A+P + G D IG+A+TGSGKT
Sbjct: 388 GKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKT 447
Query: 119 AAFAIPILNQLWHDQQPYYA------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGG 172
F +P+L + DQ P A ++APTREL QQI +G+ + GG
Sbjct: 448 LGFVLPMLRHI-KDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGG 506
Query: 173 MSMMDQARDLMRKPHIIIATPGRLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPV 230
+ Q +L R I++ TPGR++D L + G NLR++ YLVMDEADR+ DM F P
Sbjct: 507 SGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQ 566
Query: 231 LDRIL-NIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV 289
+ RI+ NI P R T LFSAT +++ L R L PV+ V + + Q + +
Sbjct: 567 ITRIVQNIRP--DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIR 624
Query: 290 PGGLKNTFLIYLLNEFIGK-STIVFTRT--KANAERISNLCNLLEFSATALHGDLNQNQR 346
P + + L+ LL E+ K +VF R+ K+ ++ S++CNL
Sbjct: 625 PESERFSRLLELLGEWYEKGKVLVFVRSQEKSISDFKSDVCNL----------------- 667
Query: 347 TGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 406
L+AT VAARGLD+ +++V+N+D P + Y+HRVGRT RAGR G
Sbjct: 668 --------------LIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 713
Query: 407 SISLVSQYD 415
+++ +S+ D
Sbjct: 714 AVTFISEDD 722
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 211 bits (536), Expect = 3e-54
Identities = 135/361 (37%), Positives = 202/361 (55%), Gaps = 14/361 (3%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP 135
P+++E + ++KP+PIQS+A P L+G D+IG+AQTG+GKT AF +P + + P
Sbjct: 292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 351
Query: 136 Y------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
+LAPTRELA QI+ S G+++ C+ GG + Q DL R II
Sbjct: 352 RGTRGGANVLVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEII 410
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRI-LNIIPTQGRTTYLF 248
I TPGRL D L ++ + YLV+DEADR+LDM F P + ++ L+I P R T +
Sbjct: 411 ICTPGRLND-LIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD--RQTIMT 467
Query: 249 SATMTSKIDKLQRASLTNPVK-CAVSNKYQTVDTLVQTLMVVPGGLK--NTFLIYLLNEF 305
SAT + +L ++ + NP++ C S ++ Q + ++ + NT ++ N
Sbjct: 468 SATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMS 527
Query: 306 IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
I+F K A+ +S+ L F +HG+ +Q R A+ K+G ILVATD
Sbjct: 528 STDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATD 587
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
VA+RGLDI + VINYD P + + Y+HRVGRT RAGR G SIS ++ D + + ++
Sbjct: 588 VASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEI 647
Query: 426 L 426
L
Sbjct: 648 L 648
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 210 bits (535), Expect = 3e-54
Identities = 121/353 (34%), Positives = 195/353 (54%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L +L+ + KP+ IQ +A+P LK D+I AQ+G+GKTA F+I +L L
Sbjct: 31 MGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDT 90
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A IL+PTRELA QI++ +LG M V+ +GG ++ + R L H++
Sbjct: 91 QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSG 150
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + + R +K LV+DEAD +L+ F L I +P G L SAT
Sbjct: 151 TPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP-GAQVVLLSAT 208
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGKST 310
+ +I ++ +T+P++ V T++ + Q + V K LI L +
Sbjct: 209 LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQA 268
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + +++ F+ +++HGD+ Q R + F+AG +L++TDV ARG
Sbjct: 269 VLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARG 328
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
LD+P V +VINYD+P + + YIHR+GR+ R GR G +I+ V Q D+ ++ IE
Sbjct: 329 LDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 381
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 210 bits (535), Expect = 3e-54
Identities = 118/353 (33%), Positives = 197/353 (55%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L EL+ + KP+ IQ +AI P ++G D+I AQ+G+GKTA F+I IL Q+
Sbjct: 21 MNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDT 80
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A ILAPTRELA QI+ +LG M V S +GG ++ + AR L H+++
Sbjct: 81 SIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVG 140
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + N K + +K V+DEAD +L F + + ++P + L SAT
Sbjct: 141 TPGRVYDMI-NRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQ-VILLSAT 198
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + ++ R + +PV V + T++ + Q + V K L L + +
Sbjct: 199 MPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQS 258
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ ++++ ++ F+ +A+HGD+ Q R + F++G +L+ TD+ ARG
Sbjct: 259 VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARG 318
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR R GR G +I+ ++ D ++ IE
Sbjct: 319 IDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIE 371
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 209 bits (533), Expect = 6e-54
Identities = 127/347 (36%), Positives = 197/347 (56%), Gaps = 9/347 (2%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL----WHDQ 133
L++A + L + T IQ+K+I P L+G D++ A+TGSGKT AF +P + L W
Sbjct: 79 LLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQH 138
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATP 193
I++PTREL+ Q L + ++GG + + L + I++ATP
Sbjct: 139 NGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATP 198
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253
GRL+DHL+NT F +R +K L++DEADR+LD+ F + ++L +P Q R + LFSAT +
Sbjct: 199 GRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQ-RQSMLFSATHS 257
Query: 254 SKIDKLQRASL-TNPVKCAVSNKYQ--TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKST 310
K+D+L + +L +NPV+ +V K + TV+ L Q +V P + L L + K
Sbjct: 258 PKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKV 317
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
+VF + + + L N ++ ++HG Q +RT F + IL+ TDVAARG
Sbjct: 318 MVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARG 377
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTAR-AGRSGKSISLVSQYDL 416
LDIP+VD ++ YD + + YIHRVGRTAR SGK++ ++ +L
Sbjct: 378 LDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEEL 424
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 209 bits (532), Expect = 8e-54
Identities = 119/354 (33%), Positives = 202/354 (56%), Gaps = 4/354 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L+ + KP+ IQ +AI P +KG D+I AQ+G+GKTA FAI IL QL
Sbjct: 38 MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI 97
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK-PHIII 190
+ + A +LAPTRELAQQI++ +LG MG +GG ++ ++ + L + PHI++
Sbjct: 98 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 157
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR+ D L N + + + +K V+DEAD +L F + I + T + + SA
Sbjct: 158 GTPGRVFDML-NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVFA-SA 215
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQ-TLMVVPGGLKNTFLIYLLNEFIGKS 309
TM + + ++ + + +P++ V + T++ + Q + V K L L
Sbjct: 216 TMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQ 275
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F T+ + ++ + +F+ +ALHGD++Q +R + F++G +L+ TD+ AR
Sbjct: 276 AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 335
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
G+D+ V +VINYD+P + ++YIHR+GR R GR G +I+ V++ D ++ IE
Sbjct: 336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 389
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 209 bits (531), Expect = 1e-53
Identities = 125/357 (35%), Positives = 197/357 (55%), Gaps = 17/357 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQ--P 135
++ K + PTPIQ + IP L G D+IG+A TGSGKT F +P++ ++ P
Sbjct: 192 ILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLP 251
Query: 136 Y------YACILAPTRELAQQIKETFDSLGSLMG------VRSTCIVGGMSMMDQARDLM 183
+ Y I+ P+RELA+Q + L+ +R +GGMS+ +Q +
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIR 311
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR 243
H+++ATPGRLMD L+ K +L +YL +DEADR++DM F + I + Q R
Sbjct: 312 HGVHMMVATPGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQ-R 369
Query: 244 TTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
T LFSATM KI +++L PV V ++Q + V K +L+ L
Sbjct: 370 QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQ 429
Query: 304 EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
+ ++F KA+ + I L A A+HG +Q +RT A++ F+ GK+ +LVA
Sbjct: 430 K-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
TDVA++GLD P++ VINYD+P + ++Y+HR+GRT R+G +G + + +++ E +L
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVL 545
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 208 bits (529), Expect = 2e-53
Identities = 140/424 (33%), Positives = 210/424 (49%), Gaps = 39/424 (9%)
Query: 80 EACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-WHDQQPYYA 138
+A + +N+PTPIQ K IP + G D++ +++TGSGKTAAF IP+L +L D A
Sbjct: 37 KAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRA 96
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
+++PTRELA Q + LG G+R C+VGG + +Q + P I++ATPGRL+
Sbjct: 97 LMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL- 155
Query: 199 HLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDK 258
H+ L ++Y+V DEADRL +M F L L IP + R T LFSAT+ +
Sbjct: 156 HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP-ESRQTLLFSATLPKMLVD 214
Query: 259 LQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI------------ 306
+A LT+P+ + + D L + K L++L F
Sbjct: 215 FAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFCFKKLLETSLKKC 274
Query: 307 ------------------GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTG 348
K T+VF T + E + + + + ++ L+ R
Sbjct: 275 KISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKM 334
Query: 349 ALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
+ F + +ILV TDVAARG+DIP +D VIN P +K ++HRVGR ARAGRSG +I
Sbjct: 335 NIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAI 394
Query: 409 SLVSQYDLELILRIEDVLGKKL----PKENVDKDAILALR--DSVDKANGEVVMELNRRN 462
SL++ +L + + LGK + K +D L R DS+ E ++ N
Sbjct: 395 SLIANDELPYLTDLFMFLGKPINFASDKSEYKEDETLIGRVPDSIVSLETEFFHSIHDNN 454
Query: 463 KEKQ 466
++ Q
Sbjct: 455 EDMQ 458
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 207 bits (526), Expect = 4e-53
Identities = 130/343 (37%), Positives = 187/343 (53%), Gaps = 8/343 (2%)
Query: 73 DLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD 132
DL +I+ Y PTPIQ +IP G D++ AQTGSGKTAAF +PIL++L D
Sbjct: 251 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310
Query: 133 QQPY-----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
I++PTRELA QI ++ + GG S Q + R H
Sbjct: 311 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCH 370
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR-TTY 246
++IATPGRL+D ++ T +++V+DEADR+LDM F + RI+ + + T
Sbjct: 371 VVIATPGRLLDFVDRTF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429
Query: 247 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
+FSAT +I ++ L N V A+ + QT+ V K + LI +L+E
Sbjct: 430 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ- 488
Query: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
TIVF TK A+ +++ + EF T++HGD Q+QR AL FK G +L+AT V
Sbjct: 489 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
A+RGLDI ++ VINYD+P Y+HR+GRT R G +G++ S
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS 591
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 206 bits (524), Expect = 6e-53
Identities = 125/347 (36%), Positives = 189/347 (54%), Gaps = 21/347 (6%)
Query: 90 PTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY----------YAC 139
PTPIQ + +P L G D+IG+A TGSGKT F +P++ ++ +Q Y Y
Sbjct: 200 PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI--MFALEQEYSLPFERNEGPYGL 257
Query: 140 ILAPTRELAQQIKETFDSLGS------LMGVRSTCIVGGMSMMDQARDLMRKPHIIIATP 193
I+ P+RELA+Q E + +RS +GG+ + + + R HI++ATP
Sbjct: 258 IICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATP 317
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253
GRLMD L+ K L +YL MDEADR++DM F + I + Q R T LFSATM
Sbjct: 318 GRLMDMLDK-KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQ-RQTLLFSATMP 375
Query: 254 SKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVF 313
KI R++L PV V + Q + V K +L+ L + ++F
Sbjct: 376 KKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQK-TAPPVLIF 434
Query: 314 TRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDI 373
K + + I L A A+HG +Q +R+ A+D ++ GK+ +LVATDVA++GLD
Sbjct: 435 AEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDF 494
Query: 374 PSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
P+V VINYD+P D ++Y+HR+GRT R+ G + +L+++ + +L
Sbjct: 495 PNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVL 541
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 206 bits (523), Expect = 8e-53
Identities = 126/357 (35%), Positives = 194/357 (54%), Gaps = 16/357 (4%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY- 137
++ + ++ K T IQ+ +IP +L+G D++ A+TGSGKT AF +P++ +L+ ++ +
Sbjct: 53 LKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFD 112
Query: 138 ---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
A I++PTRELA QI E +GS + ++GG + + + R +I+I TPG
Sbjct: 113 GLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRI-NILIGTPG 171
Query: 195 RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTS 254
R++ HL+ G N L+ LV+DEADR LDM F LD I++ + + R T LFSAT +
Sbjct: 172 RILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTL-SPSRQTLLFSATQSQ 230
Query: 255 KIDKLQRASLTN--------PVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
+ L R SLT+ + +V+ + T +TL Q + VP K L + +
Sbjct: 231 SVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHL 290
Query: 307 GKSTIVFTRTKANAERISNLCNLLE--FSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
IVF + + ++ S LHG Q RT LD F ++ L AT
Sbjct: 291 KCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFAT 350
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
DV ARG+D P+VD V+ D P D +YIHRVGR AR G+ GKS+ +++ + E L+
Sbjct: 351 DVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLK 407
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 206 bits (523), Expect = 8e-53
Identities = 138/408 (33%), Positives = 209/408 (50%), Gaps = 26/408 (6%)
Query: 20 EKIKRKALEKQQQAHANEPSPSD----EDSAQSNSKDXXXXXXXX----XXXXXXXXXXX 71
+K KRK EK+ + + + P ED + S+
Sbjct: 61 KKKKRKREEKESEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAE 120
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+L +++ CK + KP+PIQS P L G D+IG+A+TGSGKT AF IP + +
Sbjct: 121 SNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLK 178
Query: 132 DQQPY---------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL 182
+ +L+PTRELA QI + G G++S C+ GG S Q +
Sbjct: 179 KNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAI 238
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
I+I TPGRL D +E+ L + ++V+DEADR+LDM F + IL+ +
Sbjct: 239 RSGVDIVIGTPGRLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNT-NKV 296
Query: 243 RTTYLFSATMTSKIDKLQRASLT-NPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTFLIY 300
R +FSAT + KL + + NP+K + + + ++Q + V+ ++ LI
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIA 356
Query: 301 LLNEFIGKS---TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGK 357
LL ++ +VF K AER+ + A ++HG+ Q++RT +L LFK G
Sbjct: 357 LLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGS 416
Query: 358 RSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
+LVATDVAARGLDIP V++VINY P+ ++ Y+HR+GRT RAG+ G
Sbjct: 417 CPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKG 464
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 205 bits (522), Expect = 1e-52
Identities = 142/412 (34%), Positives = 223/412 (53%), Gaps = 33/412 (8%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP 135
P+L+++ + KPTPIQS+A P L+G D+I +AQTG+GKT ++ +P L D QP
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL--DSQP 288
Query: 136 YYA--------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
+L PTRELA + E S S G++S CI GG + Q D+ +
Sbjct: 289 ISREQRNGPGMLVLTPTRELALHV-EAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVD 347
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
IIIATPGRL D L+ NLR + YLV+DEAD++LDMEF P + +IL + R T +
Sbjct: 348 IIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD-RQTVM 405
Query: 248 FSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
SAT + +L + L +P+ V N V+T+ Q ++V K L EF+
Sbjct: 406 TSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRA----LTQEFV 461
Query: 307 -----GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
I+F K A+ +S+ N+ SA +LHG+ Q+ + A++ FK+G IL
Sbjct: 462 ENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKIL 521
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
+ TD+ +RGLD+ V V NYD P + Y+HRVG R G++G S++L++Q D ++
Sbjct: 522 ITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGE 581
Query: 422 IEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRR 473
+ +L + ++V +D ++ + + +R++E ++R G+R
Sbjct: 582 LIKILDR--ANQSVPEDLVVMAE--------QYKLNQQKRHRETRSRKPGQR 623
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 205 bits (521), Expect = 1e-52
Identities = 126/357 (35%), Positives = 194/357 (54%), Gaps = 17/357 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQ--P 135
+++ K +PTPIQ + +P L G D+IG+A TGSGKT F +P++ ++ P
Sbjct: 157 VLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMP 216
Query: 136 YYA------CILAPTRELAQQIKETFDSLGSLM------GVRSTCIVGGMSMMDQARDLM 183
A I+ P+RELA+Q E + + + +RS +GG+ M Q +
Sbjct: 217 IAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVK 276
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR 243
R HI++ATPGRL D L K +L +YL +DEADRL+D+ F + + + +Q R
Sbjct: 277 RGVHIVVATPGRLKDMLAKKK-MSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQ-R 334
Query: 244 TTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
T LFSATM +KI R++L PV V ++Q + V K +L+ L
Sbjct: 335 QTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ 394
Query: 304 EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVA 363
+ ++F KA+ + I L A A+HG +Q R A+ FKAGK+ +LVA
Sbjct: 395 K-TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVA 453
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
TDVA++GLD P + VINYD+P + ++Y+HR+GRT R G++G + + +++ E L
Sbjct: 454 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 510
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 204 bits (520), Expect = 2e-52
Identities = 130/350 (37%), Positives = 189/350 (53%), Gaps = 10/350 (2%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ-QPYY 137
+E K+ +Y KPT IQ I +L GSD++G A+TGSGKT A IP+L LW + P Y
Sbjct: 88 LEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDY 147
Query: 138 ---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
A I++PTRELA Q T +++G+ G ++GG + + R+ + +II+ TPG
Sbjct: 148 GLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFE-RNRISGINIIVCTPG 206
Query: 195 RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTS 254
RL+ H++ + L+ LV+DEADR+LDM F L+ I+N +P + R T LFSAT T
Sbjct: 207 RLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAE-RQTLLFSATQTR 265
Query: 255 KIDKLQRASLTNPVKCAVSNKYQ--TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIV 312
+ L R +PV +V T D L Q+ ++V K L + K ++V
Sbjct: 266 NVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLV 325
Query: 313 FTRTKANAERISNLCNLLE--FSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
F + A ++ + L L G +NQ +R F K ++L+ATDVA+RG
Sbjct: 326 FVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRG 385
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
LD +D VI D P YIHRVGR+AR SG S+ +VS E ++
Sbjct: 386 LDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMI 435
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 204 bits (519), Expect = 2e-52
Identities = 129/370 (34%), Positives = 199/370 (52%), Gaps = 13/370 (3%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL---- 129
L + ++ + Y T IQ + I AL+G D++G A+TGSGKT AF +P+L L
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 135
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
W I++PTRELA Q E +G + I+GG + +A + + +I+
Sbjct: 136 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA-ERINNINIL 194
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
+ TPGRL+ H++ T F+ L+ LV+DEADR+LDM F ++ ++ +P + R T LFS
Sbjct: 195 VCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK-RQTLLFS 253
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNK--YQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307
AT T + L R SL NP V K Y T TL Q +V K + L L +
Sbjct: 254 ATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLK 313
Query: 308 KSTIVFTRTKANAERISNL-CNLLE-FSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
K +IVF + + + + C L S ALHG Q +R + F + ++L ATD
Sbjct: 314 KKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATD 373
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
+AARGLD P+V+ V+ +D P D+ +YIHR GRTAR G+++ ++ + + ++ +
Sbjct: 374 IAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM---VQQL 430
Query: 426 LGKKLPKENV 435
L KK+P + +
Sbjct: 431 LQKKVPVKEI 440
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 204 bits (519), Expect = 2e-52
Identities = 119/369 (32%), Positives = 201/369 (54%), Gaps = 6/369 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L P+L+ + KP+ IQ + I P KG D+I AQ+G+GKTA F +L QL
Sbjct: 46 MELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDI 105
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A +LAPTRELAQQI++ +LG +GV++ VGG S+ + R L H+++
Sbjct: 106 SLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVG 165
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D L + +K V+DEAD +L F + I ++P++ + +FSAT
Sbjct: 166 TPGRVFDLLRR-QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVG-VFSAT 223
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + ++ R + PV+ V T++ + Q + V K L L +
Sbjct: 224 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQS 283
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + +++ + + +A HGD++QN R + F++G +L+ TD+ ARG
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 343
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL---ILRIEDVLG 427
+D+ V +VIN+D+P ++Y+HR+GR+ R GR G +I+ ++ D + I R +V+
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVV 403
Query: 428 KKLPKENVD 436
++LP D
Sbjct: 404 EELPSNVAD 412
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 204 bits (518), Expect = 3e-52
Identities = 112/252 (44%), Positives = 157/252 (61%), Gaps = 8/252 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L L+E C+ L KPTP+Q IP L+G D +G A+TGSGKTAAF +PIL +L
Sbjct: 7 LGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
D + +L PTRELA QI E F LG +G++ IVGGM M+ QA +L RKPH++IA
Sbjct: 67 DPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDM---EFGPVLDRILNIIPTQGRTTYLF 248
TPGRL DHL ++ F+++K+++LVMDEADRLL+ +F L+ IL +P + R T LF
Sbjct: 127 TPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR-RQTLLF 185
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK 308
SAT+T + +LQ + P TV+ L Q ++VP +K+ +L++L+ F +
Sbjct: 186 SATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDE 245
Query: 309 ----STIVFTRT 316
S I+FT T
Sbjct: 246 HEDWSIIIFTNT 257
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 203 bits (516), Expect = 5e-52
Identities = 132/381 (34%), Positives = 213/381 (55%), Gaps = 20/381 (5%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ---- 133
L+EA + Y +PTPIQ+ AIP AL G D++G+A+TGSGKTAA+ P + +
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA 335
Query: 134 -QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK-PHIIIA 191
+ A I+ PTRELA Q+ + + + C GG S +Q+ +L + +++
Sbjct: 336 GEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVC 395
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR++D L N + +LV DEADR+ DM F + I + + R +FSAT
Sbjct: 396 TPGRIID-LVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPD-RQCLMFSAT 453
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG-GLKNTFLIYLLNEF--IGK 308
K+++L R +L +PV+ + + Q + V+ +K +LI L EF +GK
Sbjct: 454 FKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGK 513
Query: 309 STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAA 368
++F K ++E ++ + +F LHGD+ Q +R L F+ K ILVATDVAA
Sbjct: 514 -VLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAA 571
Query: 369 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI---LRIEDV 425
RGLDI + VIN+D+ D +++HR+GRT RAG G + +LV++ D+E++ ++ +
Sbjct: 572 RGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLES 631
Query: 426 LGKKLPKENVDKDAILALRDS 446
+ +++PK +D LA++ S
Sbjct: 632 VSQEVPKPLMD----LAMKSS 648
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 202 bits (513), Expect = 1e-51
Identities = 114/353 (32%), Positives = 191/353 (53%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L PEL+ + +P+ IQ +AI P L D++ AQ+G+GKTA F+I +L ++
Sbjct: 24 MNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDT 83
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A ILAPTRELAQQI++ +LG LM V +GG + D L H+++
Sbjct: 84 SLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVG 143
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D ++ + ++ V+DEAD +L F + I ++P + L SAT
Sbjct: 144 TPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVV-LLSAT 201
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-PGGLKNTFLIYLLNEFIGKST 310
M + ++ + +P++ V T++ + Q + V K L L
Sbjct: 202 MPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQA 261
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + ++ +F+ +++HGD++Q QR + F+ G IL+ TD+ ARG
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARG 321
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR R GR G SI+ V+ D+ ++ IE
Sbjct: 322 IDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIE 374
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 201 bits (512), Expect = 2e-51
Identities = 115/353 (32%), Positives = 193/353 (54%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L +L+ + KP+ IQ +AI +KG D+I +Q+G+GKTA F+I +L L
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A ILAPTRELA QI++ +LG M V+ +GG ++ + R L H++
Sbjct: 103 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + + R +K LV+DEAD +L+ F + + +P + L SAT
Sbjct: 163 TPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV-LISAT 220
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGKST 310
+ +I ++ +T+P++ V T++ + Q + V K L L +
Sbjct: 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 280
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F TK + ++ F+ +++HGD+ Q +R + F++G +L++TDV ARG
Sbjct: 281 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 340
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
LD+P V ++INYD+P + + YIHR+GR+ R GR G +I+ V D+ ++ IE
Sbjct: 341 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 201 bits (512), Expect = 2e-51
Identities = 128/360 (35%), Positives = 200/360 (55%), Gaps = 23/360 (6%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ---- 133
L+ K+ PTPIQ + +P L G D+IG+A TGSGKT F +P++ ++
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMP 167
Query: 134 ----QPYYACILAPTRELAQQIKETFDS-LGSLMG-----VRSTCIVGGMSMMDQARDLM 183
+ A ++ P+RELA+Q + + + SL+ +RS +GG+ M Q +
Sbjct: 168 IAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVK 227
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR 243
+ HI++ATPGRL D L K +L + L +DEADRL+D+ F + + + +Q R
Sbjct: 228 KGVHIVVATPGRLKDILAKKK-MSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQ-R 285
Query: 244 TTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
T LFSATM +KI ++L PV V ++Q + V K ++YLL
Sbjct: 286 QTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK---IVYLL- 341
Query: 304 EFIGKST---IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
E + K+T ++F KA+ + I L A A+HG +Q R A+ LFKAGK+ +
Sbjct: 342 ECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDV 401
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
LVATDVA++GLD P + VINYD+P + ++Y+HR+GRT R G++G + + +++ E+ L
Sbjct: 402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITL 461
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 201 bits (512), Expect = 2e-51
Identities = 116/353 (32%), Positives = 194/353 (54%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L EL+ + KP+ IQ ++I P +KG D+I AQ+G+GKTA F+I IL L
Sbjct: 31 MNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDT 90
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ L+PTRELA QI++ +LG +M V+ +GG ++ + R L HI+
Sbjct: 91 TLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSG 150
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D ++ + R +K LV+DEAD +L+ F + + +P + L SAT
Sbjct: 151 TPGRVFDMIKR-RVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV-LISAT 208
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGKST 310
+ +I ++ +T+P++ V T++ + Q + V K L L +
Sbjct: 209 LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 268
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F TK + ++ F+ +++HGD+ Q +R + F+AG+ +L+ TDV ARG
Sbjct: 269 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARG 328
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + + YIHR+GR+ R GR G +I+ V D+ ++ IE
Sbjct: 329 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 201 bits (510), Expect = 3e-51
Identities = 118/369 (31%), Positives = 200/369 (53%), Gaps = 6/369 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L L+ + KP+ IQ + I P KG D+I AQ+G+GKTA F +L QL
Sbjct: 44 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDF 103
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A +LAPTRELAQQI++ +LG +GV+ VGG S+ + R L H+++
Sbjct: 104 SLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 163
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D L+ + +K V+DEAD +L F + I ++P + + +FSAT
Sbjct: 164 TPGRVFDMLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG-VFSAT 221
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + ++ R ++ PV+ V T++ + Q + V K L L +
Sbjct: 222 MPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 281
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + +++ + + +A HGD++QN R + F++G +L+ TD+ ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE---DVLG 427
+D+ V +VIN+D+P ++Y+HR+GR+ R GR G +I+ V++ D ++ I+ +V+
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV 401
Query: 428 KKLPKENVD 436
++LP D
Sbjct: 402 EELPSNVAD 410
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 200 bits (509), Expect = 3e-51
Identities = 126/361 (34%), Positives = 203/361 (55%), Gaps = 21/361 (5%)
Query: 90 PTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQ--PY------YACIL 141
PT IQ + IP AL G D+IG+A TGSGKT F +P++ + P+ + I+
Sbjct: 213 PTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLII 272
Query: 142 APTRELAQQIK----ETFDSLGS--LMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
P+RELA+QI E FD+LG L +R+ +GG+ + +QA+D+ HI++ATPGR
Sbjct: 273 VPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGR 332
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
L D L K NL +YLV+DEADR+LDM F + I Q R T LFSATM K
Sbjct: 333 LSDMLTK-KIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQ-RQTLLFSATMPRK 390
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTR 315
I +++L P+ V ++Q L V K ++ L + K ++F
Sbjct: 391 IQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTSPK-VLIFAE 449
Query: 316 TKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPS 375
K + + I + ++HG +Q+ R ++ F+ ++ +LVATDVA++GLD
Sbjct: 450 KKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQG 509
Query: 376 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRIEDVL---GKKLP 431
++ VIN+D+P D ++Y+HR+GRT R+GR G + + ++ + ++ ++ ++ +L G++LP
Sbjct: 510 IEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELP 569
Query: 432 K 432
+
Sbjct: 570 E 570
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 200 bits (508), Expect = 5e-51
Identities = 134/428 (31%), Positives = 218/428 (50%), Gaps = 29/428 (6%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD- 132
L P ++A K+ + T +Q +P L+G D++ A+TG+GKT AF +P + +
Sbjct: 366 LSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSP 425
Query: 133 -------QQPYYACILAPTRELAQQIKETFDSLGSL---MGVRSTCIVGGMSMMDQARDL 182
Q P ++ PTRELA Q ++L +GV+ ++GG + + R +
Sbjct: 426 PASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ--VVIGGTKLPTEQRRM 483
Query: 183 MRKP-HIIIATPGRLMDHLENTKGFNLRKL--KYLVMDEADRLLDMEFGPVLDRILNIIP 239
P I++ATPGRL DH+ENT GF R + K LV+DEAD LLDM F ++RI+ +P
Sbjct: 484 QTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVP 543
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNT 296
Q R T+LFSAT+ ++ ++ +L + C +T + Q M+ +
Sbjct: 544 KQ-RQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFS 602
Query: 297 FLIYLLNEFIGKST----IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDL 352
L LL E I + I+F T +++L + L + +H Q+ RT D
Sbjct: 603 LLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDE 662
Query: 353 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
F+ K ILV +DV+ARG+D P V +V+ +P D + YIHR+GRT R G+ G+ + L++
Sbjct: 663 FRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 722
Query: 413 QYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGR 472
++ + ++D+ K P +D +A+ V K +V M+ N+ + G +
Sbjct: 723 PWEEYFMSSVKDLPITKSPLPPIDPEAV----KRVQKGLSQVEMK-NKEAAYQAWLGYYK 777
Query: 473 RGRMATRD 480
+M RD
Sbjct: 778 SQKMIARD 785
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 199 bits (505), Expect = 1e-50
Identities = 131/358 (36%), Positives = 192/358 (53%), Gaps = 19/358 (5%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL---NQ 128
LD+ +L E KN Y +PTPIQ+ P L G D++G+A+TGSGKT AF IP L N
Sbjct: 172 LDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNG 229
Query: 129 LWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
L ++ +++PTRELA Q E +SL +++ + GG +QAR + +
Sbjct: 230 LSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASV 288
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQ----GRT 244
II TPGRL+D L N + ++ YLV+DEADR+LD F + I++ P R
Sbjct: 289 IIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQ 347
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAV-SNKYQTVDTLVQTLMVVPGGL-KNTFLIYLL 302
T FSAT + L L +PVK + S++ + Q + ++ K L LL
Sbjct: 348 TVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLL 407
Query: 303 NEFIGKS-----TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGK 357
+ + ++F K A R+ +++ +HGD++Q R AL+ FK+GK
Sbjct: 408 RKHLSSGGKDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKSGK 466
Query: 358 RSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
+LVATDVAARGLDIP V +VIN P+ + Y+HR+GRT RA G +I+ + D
Sbjct: 467 CPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 198 bits (503), Expect = 2e-50
Identities = 118/369 (31%), Positives = 198/369 (52%), Gaps = 6/369 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L L+ + KP+ IQ + I P KG D+I AQ+G+GKTA F +L QL +
Sbjct: 44 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDY 103
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A +LAPTRELAQQI++ +LG GV+ VGG S+ + R L H+++
Sbjct: 104 ALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVG 163
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D L + +K V+DEAD +L F + I ++P + + +FSAT
Sbjct: 164 TPGRVFDMLRR-QSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG-VFSAT 221
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + ++ R ++ PV+ V T++ + Q + V K L L +
Sbjct: 222 MPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQS 281
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + +++ + + +A HGD++QN R + F++G +L+ TD+ ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE---DVLG 427
+D+ V +VIN+D+P ++Y+HR+GR+ R GR G +I+ V+ D ++ I+ +V+
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVV 401
Query: 428 KKLPKENVD 436
++LP D
Sbjct: 402 EELPSNVAD 410
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 197 bits (502), Expect = 2e-50
Identities = 114/353 (32%), Positives = 189/353 (53%), Gaps = 3/353 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L +L+ Y P+ +QS+AI KG D+I AQ+G+GKTA F+I IL +
Sbjct: 26 MNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDL 85
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A IL+PTRELA QI+ +LG M V+ +GG S+ + + L H++
Sbjct: 86 SVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSG 145
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + + R +K L++DEAD LL+ F + I +P G + SAT
Sbjct: 146 TPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPP-GTQVVVVSAT 203
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGKST 310
+ + ++ TNPV+ V T++ L Q + V K L L +
Sbjct: 204 LPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQA 263
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F ++ + ++ F+ T++HG++ Q +R + F+ G +L+ TD+ ARG
Sbjct: 264 VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARG 323
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR+ R GR G +I+ V+ D+ ++ IE
Sbjct: 324 IDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 376
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 196 bits (498), Expect = 7e-50
Identities = 136/412 (33%), Positives = 215/412 (52%), Gaps = 32/412 (7%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW--- 130
L P ++A K+ Y T +Q +P LKG D++ A+TG+GKT AF +P + +
Sbjct: 61 LSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
Query: 131 -----HDQQPYYACILAPTRELAQQIKETFDSLGSL---MGVRSTCIVGGMSM-MDQARD 181
+ + P A ++ PTRELA Q ++L +GV+ ++GG + ++Q R
Sbjct: 121 PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQ--VVIGGTRLGLEQKRM 178
Query: 182 LMRKPHIIIATPGRLMDHLENTKGF--NLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP 239
I++ATPGRL DH+ENT GF L+ +K LV+DEAD LLDM F ++RI++ +P
Sbjct: 179 QTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVP 238
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNT 296
+ R T+LFSAT+ ++ ++ +L V C +T + Q M+ +
Sbjct: 239 KE-RQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFS 297
Query: 297 FLIYLLNEFI----GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDL 352
L LL E I IVF T + +++L L + +H Q+ RT +
Sbjct: 298 LLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNE 357
Query: 353 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
F+ K ILV +DV+ARG+D P V +V+ +P D + YIHR+GRT R G+ G+ I L++
Sbjct: 358 FRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLA 417
Query: 413 QYDLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKE 464
++ + ++D+ K P ++D + + V KA V M RNKE
Sbjct: 418 PWEEYFLSSLKDLPITKSPLPSIDPETV----KKVQKALCHVEM----RNKE 461
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 193 bits (491), Expect = 4e-49
Identities = 110/353 (31%), Positives = 194/353 (54%), Gaps = 4/353 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L+ + +P+ IQ +AI P ++G D++ AQ+G+GKT F+I L ++
Sbjct: 27 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 86
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A +LAPTRELA QI++ +L M ++ +GG S ++ A L R I++
Sbjct: 87 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVG 145
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D+++ + F K+K ++DEAD +L F + +I ++P + L SAT
Sbjct: 146 TPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV-LLSAT 203
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + + ++ + NPV+ V T++ + Q + V K L L +
Sbjct: 204 MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQA 263
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ E ++ +F+ +A++ DL Q +R + F++G IL++TD+ ARG
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 323
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR R GR G +I+ V+ D+ + +E
Sbjct: 324 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 376
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 193 bits (491), Expect = 4e-49
Identities = 110/353 (31%), Positives = 194/353 (54%), Gaps = 4/353 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L+ + +P+ IQ +AI P ++G D++ AQ+G+GKT F+I L ++
Sbjct: 27 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 86
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A +LAPTRELA QI++ +L M ++ +GG S ++ A L R I++
Sbjct: 87 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVG 145
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D+++ + F K+K ++DEAD +L F + +I ++P + L SAT
Sbjct: 146 TPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV-LLSAT 203
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTFLIYLLNEFIGKST 310
M + + ++ + NPV+ V T++ + Q + V K L L +
Sbjct: 204 MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQA 263
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ E ++ +F+ +A++ DL Q +R + F++G IL++TD+ ARG
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 323
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
+D+ V +VINYD+P + ++YIHR+GR R GR G +I+ V+ D+ + +E
Sbjct: 324 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 376
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 193 bits (491), Expect = 4e-49
Identities = 107/348 (30%), Positives = 189/348 (53%), Gaps = 3/348 (0%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+++ + KP+ IQ +A+ P L+G D+I AQ+G+GKT+ A+ + + +
Sbjct: 45 DVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREV 104
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
A IL+PTRELA Q ++T ++G +++ +GG S+ + R L H++ TPGR+
Sbjct: 105 QALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRV 164
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
D ++ + R +K L++DE+D +L F + + +P + L SAT+ +I
Sbjct: 165 CDMIKR-RSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC-LVSATLPHEI 222
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIGKSTIVFTR 315
++ +T PVK V T++ + Q + V K L L + ++F
Sbjct: 223 LEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCN 282
Query: 316 TKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPS 375
TK + +S F+ +++HGD+ Q +R ++ F++G +L+ TDV ARG+D+
Sbjct: 283 TKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQ 342
Query: 376 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
V +VINYD+P + + YIHR+GR+ R GR G +I+ V D++++ IE
Sbjct: 343 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIE 390
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 192 bits (489), Expect = 7e-49
Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 24/355 (6%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ--- 133
++IEA ++ TP+Q+ IP D+ A TGSGKT AF +P++ L
Sbjct: 26 DIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFP 85
Query: 134 -QPYYAC--ILAPTRELAQQIKETFDS-LGSLMGVRSTCIVGGMSMMDQARDLMRKP-HI 188
+P+ I++PTREL+ QI + +L V S +VGG + + + + ++
Sbjct: 86 PKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNV 145
Query: 189 IIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLF 248
+I TPGRL D +E + + R L+ L++DEADRLL+M F ++ I++ +P Q RT LF
Sbjct: 146 LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG-LF 204
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-----------KNTF 297
SAT T +++L +A L NPV+ V K ++ + T P GL K++
Sbjct: 205 SATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQ 264
Query: 298 LIYLLNEFIGKSTIVFTRTKANAER----ISNLCNLLEFSATALHGDLNQNQRTGALDLF 353
L+ LL + K IVF T A+ + +S + L S +HGD+ QN R AL F
Sbjct: 265 LVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASF 324
Query: 354 KAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
L+ TDVAARGLDIP +D V+ YD P D + HR GRTAR GR G++I
Sbjct: 325 TKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAI 379
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 191 bits (485), Expect = 2e-48
Identities = 126/413 (30%), Positives = 208/413 (49%), Gaps = 26/413 (6%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW--- 130
L P ++ ++ + T +Q +P L+G DI+ A+TG+GKT AF +P + +
Sbjct: 87 LSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAP 146
Query: 131 -----HDQQPYYACILAPTRELA-QQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR 184
+ P ++ PTRELA Q E L + ++GG + + R L +
Sbjct: 147 PASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQK 206
Query: 185 KP-HIIIATPGRLMDHLENTKGFNLRKL--KYLVMDEADRLLDMEFGPVLDRILNIIPTQ 241
P I++ATPGRL DH++NT GF R + K LV+DEAD LLDM F ++RI+ +P Q
Sbjct: 207 SPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQ 266
Query: 242 GRTTYLFSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFL 298
R T+LFSAT++ ++ ++ +L V C +T + Q M+ + L
Sbjct: 267 -RQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLL 325
Query: 299 IYLLNEFI----GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFK 354
LL + I G I+F T +++L L + +H Q+ RT D F+
Sbjct: 326 YGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFR 385
Query: 355 AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQY 414
K ILV +DV+ARG+D P V +V+ +P D + YIHR+GRT R G+ G+ + L++ +
Sbjct: 386 KSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPW 445
Query: 415 DLELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQA 467
+ + ++D+ K +D +A+ ++ G + +E+ + QA
Sbjct: 446 EEYFLSSVKDLPITKSSLPPIDHEAVKKVQ------KGLIQVEMTNKEAAYQA 492
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 191 bits (484), Expect = 3e-48
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 22/343 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW----------HDQQPY 136
+ KP+PIQS+ P L G D IG++QTGSGKT AF +P L + +Q+P
Sbjct: 104 FEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPS 163
Query: 137 -YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
+ +L+PTRELAQQI+ S G +S C+ GG S +Q I+IATPGR
Sbjct: 164 PFVLVLSPTRELAQQIEGEVKKY-SYNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGR 222
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
L D L N +L + Y+V+DEADR+LDM F + RIL I R L SAT
Sbjct: 223 LTD-LSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD-RLVALTSATWPEG 280
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVD--TLVQTLMVVPGG---LKNTFLIYLLNEFIGKS- 309
+ KL T AV+ ++ Q VP L+ ++ L G++
Sbjct: 281 VRKLTD-KYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNY 339
Query: 310 -TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAA 368
I+F ++K A+ +S+ + ++ LHG +Q+ R +L++ ++G+ ILVATD+A+
Sbjct: 340 KMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLAS 399
Query: 369 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 411
RG+D+P + V+NYD P+D + Y+HRVGRT RAGR G+++S +
Sbjct: 400 RGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFL 442
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 190 bits (483), Expect = 4e-48
Identities = 122/381 (32%), Positives = 196/381 (51%), Gaps = 4/381 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L P L++ +++ Y+ P+P+Q +IP L G +++ ++ G+GKTA++ +P+LN +
Sbjct: 113 LGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINS 172
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ IL P RELA QI + GV S +VGG SM D + H+++
Sbjct: 173 SELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVG 232
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR++D +E G L K LV DEAD+LLD+ FG + ++L+++P + + L+SAT
Sbjct: 233 TPGRIVDLVEKRVG-TLSKRVILVFDEADKLLDVTFGETVTKLLDLLPRE-KQMLLYSAT 290
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTI 311
+ R + NP+ C K + Q V K L LL +
Sbjct: 291 FPYFVTGFIRRYMKNPL-CINLMKELAPVGVKQFYTYVKPSEKLLCLKSLLLRLSINQCV 349
Query: 312 VFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGL 371
+F + E ++ + + +H + Q R F GK ILVATD+ RG+
Sbjct: 350 IFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGV 409
Query: 372 DIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP 431
D P+ + VIN+DI +SY+HR+GR R G G +ISLV+ + E+++ IE LGK++
Sbjct: 410 DAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKEIS 469
Query: 432 KENVDKDAILALRDSVDKANG 452
+ DK ++D+ G
Sbjct: 470 PLS-DKGLSRLHESNIDRNQG 489
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 189 bits (481), Expect = 6e-48
Identities = 119/363 (32%), Positives = 189/363 (51%), Gaps = 5/363 (1%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+L++ + KP+PIQ ++IP AL GSDI+ A+ G+GKT AF IP+L ++ +
Sbjct: 134 DLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVI 193
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
A IL PTRELA Q + L + ++ GG S+ D L + H+++ TPGR+
Sbjct: 194 QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI 253
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
+D L L+ LVMDEAD+LL EF P L+ ++ +P Q R +FSAT +
Sbjct: 254 LD-LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLP-QNRQFLMFSATFPVTV 311
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRT 316
+ L P + ++ T+ + Q V K L L ++ +I+F +
Sbjct: 312 KAFKDRHLRKPYVINLMDQL-TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 370
Query: 317 KANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV 376
E ++ L +S +H + Q+ R F+ G LV TD+ RG+DI +V
Sbjct: 371 VNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAV 430
Query: 377 DIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP--KEN 434
++VIN+D P S+SY+HRVGR+ R G G +++LV+ D + + E LG ++ N
Sbjct: 431 NVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSN 490
Query: 435 VDK 437
+D+
Sbjct: 491 IDQ 493
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 189 bits (480), Expect = 8e-48
Identities = 117/371 (31%), Positives = 190/371 (50%), Gaps = 5/371 (1%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
EL+ + KP+PIQ +AIP A+ G DI+ A+ G+GKTAAF IP L ++
Sbjct: 56 ELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI 115
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
A I+ PTRELA Q + +LG G+ GG ++ D L HI++ TPGR+
Sbjct: 116 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV 175
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
+D L + K +L +MDEAD++L +F ++++IL+ +P + LFSAT +
Sbjct: 176 LD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT-HQSLLFSATFPLTV 233
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRT 316
+ L P + + + T+ + Q V K L L ++ I+F +
Sbjct: 234 KEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNS 292
Query: 317 KANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV 376
E ++ L +S H + Q +R F+ GK LV +D+ RG+DI +V
Sbjct: 293 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 352
Query: 377 DIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP--KEN 434
++VIN+D P +++Y+HR+GR+ R G G +I+L++ D + +IE LG ++
Sbjct: 353 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 412
Query: 435 VDKDAILALRD 445
+DK +A D
Sbjct: 413 IDKSLYVAEND 423
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 187 bits (476), Expect = 2e-47
Identities = 124/370 (33%), Positives = 191/370 (51%), Gaps = 29/370 (7%)
Query: 73 DLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD 132
D+ + + Y + TPIQ +P G DI+ AQTGSGKTAAF +PI+++L +
Sbjct: 304 DIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILE 363
Query: 133 QQPYYAC---------ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLM 183
+ Y IL PTRELA QI + + GG+++ +M
Sbjct: 364 KDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIM 423
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILN---IIP 239
+ II+ T GR+ E+ L K +YLV+DEADR++D M FGP +++I+N +
Sbjct: 424 KGCTIIVGTIGRVKHFCEDG-AIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPK 482
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNPV------------KCAVSNKYQTVD--TLVQT 285
R T +FSAT S + + R L KC + +++ D + V
Sbjct: 483 NDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQ-EFELCDRTSKVDK 541
Query: 286 LMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQ 345
L+ + G +T+ ++ K TIVF + A+ ++++ + + A +HG Q +
Sbjct: 542 LLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKE 601
Query: 346 RTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
R+ AL LF++G + +L+AT V RGLDI VD VINYD+P + YIHR+GRT R G SG
Sbjct: 602 RSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSG 661
Query: 406 KSISLVSQYD 415
++ S +S D
Sbjct: 662 RATSFISLAD 671
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 186 bits (473), Expect = 5e-47
Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 34/375 (9%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH---DQQPYYACILAP 143
+ K TP+Q+ AIP LK D++ A TGSGKT A+ +P +++ D+ A I+AP
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAP 80
Query: 144 TRELAQQI----KETF----DSLGSLMGVRSTCIVGGMSMM--DQARDLMRKPHIIIATP 193
TRELA QI KE DSL + + +GG + D A + P ++I TP
Sbjct: 81 TRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTP 140
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253
GRL + L + + L+ L++DEAD L+DM F L I++ +P Q RT LFSATM
Sbjct: 141 GRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTG-LFSATMN 196
Query: 254 SKIDK-LQRASLTNPVKCAVSNKYQTVDT-----LVQTLMVVPGGLKNTFLIYLLNEFIG 307
+ L+ A L N V+ +V+ + +DT L +V+P K +I+LL
Sbjct: 197 DTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEY 256
Query: 308 KSTIVFTRTKANAERISNL--CNLLEFSATALHGDLNQNQRTGALDLFK-AGKRSILVAT 364
+ IVF + A+ E ++L L F ALHG Q+ R+ + FK + K+++L T
Sbjct: 257 EKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTT 316
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS---QYDLELILR 421
D+A+RGLDIP+VD V+ D P+D KS+ HR GR RAGR+G +I L++ + + E +LR
Sbjct: 317 DIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLR 376
Query: 422 IEDVLGKKLPKENVD 436
+ +K+P +D
Sbjct: 377 V-----RKVPITRID 386
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 186 bits (472), Expect = 7e-47
Identities = 126/365 (34%), Positives = 190/365 (51%), Gaps = 27/365 (7%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L+P + + + TP+Q+ IP D++ + TGSGKTAAF IP+L ++ ++
Sbjct: 14 LLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEE 73
Query: 134 QP--------YYACILAPTRELAQQIKETFDSL-----GSLMGVRSTCIVGG--MSMMDQ 178
+++ I+APTREL++QI+ S L ++ +VG ++ D
Sbjct: 74 ANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDD 133
Query: 179 ARDLMR-KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNI 237
+ +R +P I+I TPGR++D L+ +VMDEADRLLDM F ++IL +
Sbjct: 134 VSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRL 192
Query: 238 IPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTF 297
+P Q RT LFSATM S + + L NPV+ V++K Q +L VV K
Sbjct: 193 LPKQRRTG-LFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQL 251
Query: 298 LIYLLNEFIGKSTIVFTRTKANAERISNLCNLL--------EFSATALHGDLNQNQRTGA 349
L+ +LN + K IV+ T + + L E +LHG L + RT
Sbjct: 252 LVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKT 311
Query: 350 LDLFKAG-KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
L F S+L TDVAARG+DIP VD+VI D P ++ ++HR GRT RA R GK+I
Sbjct: 312 LTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371
Query: 409 SLVSQ 413
+ +++
Sbjct: 372 TFLNE 376
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 186 bits (472), Expect = 7e-47
Identities = 114/363 (31%), Positives = 193/363 (52%), Gaps = 6/363 (1%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L +L+ + + P+ IQS+AI + G D+I AQ+G+GKTA F I +L +
Sbjct: 28 MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP-HIII 190
++ A IL+PTRELA QI + +LG M V + I GG ++ D + + + +
Sbjct: 88 RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT--TYLF 248
TPGR++D ++ R ++ LV+DEAD LL G +I +I + +
Sbjct: 148 GTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLG-FKQQIYDIFAKLPKNCQVVVV 205
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG-LKNTFLIYLLNEFIG 307
SATM I ++ R + +PVK V +++ + Q ++ V K L + +
Sbjct: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
++F TK + +S F+ ++HGD+ Q +R ++ F+ G +L++TDV
Sbjct: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLG 427
ARG+D+ V +VINYD+P ++YIHR+GR+ R GR G +I+ +++ DL + IE
Sbjct: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
Query: 428 KKL 430
K+
Sbjct: 386 IKI 388
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 185 bits (470), Expect = 1e-46
Identities = 115/354 (32%), Positives = 183/354 (51%), Gaps = 3/354 (0%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+L+ + KP+PIQ ++IP AL GSDI+ A+ G+GKT AF IP L ++ +
Sbjct: 164 DLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVI 223
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
A IL PTRELA Q + L + + GG S+ D L + H+++ TPGR+
Sbjct: 224 QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI 283
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
+D L L+ LVMDEAD+LL +EF P ++ ++ +P + R +FSAT +
Sbjct: 284 LD-LAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP-ESRQILMFSATFPVTV 341
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRT 316
+ L P + ++ T+ + Q V K L L ++ +I+F +
Sbjct: 342 KSFKDRYLKKPYIINLMDQL-TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 400
Query: 317 KANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV 376
E ++ L +S +H + Q+ R F+ G LV TD+ RG+DI +V
Sbjct: 401 VNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 460
Query: 377 DIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKL 430
++VIN+D P S+SY+HRVGR+ R G G +++LV+ D + + E LG ++
Sbjct: 461 NVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI 514
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 185 bits (470), Expect = 1e-46
Identities = 124/349 (35%), Positives = 187/349 (53%), Gaps = 15/349 (4%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L ++IEA + TP+Q++ IP D++ A TGSGKT AF +P + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 134 ----QPYYAC--ILAPTRELAQQIKETFDS-LGSLMGVRSTCIVGGMSMMDQARDLMRK- 185
+P+ I++PTREL+ QI + + + +L V S +VGG + L +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
+++I TPGRL D ++ + + R L+ L++DEADRLLDM F ++ I++ +P Q RT
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 246 YLFSATMTSKIDKLQRASLTNPVKC--AVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
LFSAT T + L +A L N ++ +K +T L + K++ L++LL
Sbjct: 203 -LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLI 261
Query: 304 EFIGKSTIVFTRTKANAER----ISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
E K +VF T A + +S + L S + HG ++Q R AL F
Sbjct: 262 ENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSG 321
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
+L+ TDVAARGLDIP +D V+ YD P D +IHRVGRTAR R G++I
Sbjct: 322 VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAI 370
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 185 bits (469), Expect = 2e-46
Identities = 115/354 (32%), Positives = 185/354 (51%), Gaps = 3/354 (0%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
EL+ + +P+PIQ ++IP AL G DI+ A+ G+GKTAAF IP L ++ +
Sbjct: 54 ELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKI 113
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
IL PTRELA Q + +LG M V+ GG ++ D L HI++ TPGR+
Sbjct: 114 QTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRV 173
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
+D L + + VMDEAD+LL EF P+++++L+ P + R L+SAT +
Sbjct: 174 LD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP-KNRQISLYSATFPLIV 231
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRT 316
L P + + ++ T+ + Q V K L L ++ +I+F +
Sbjct: 232 KNFMDKHLNKPYEINLMDEL-TLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNS 290
Query: 317 KANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV 376
E ++ L +S H + Q+ R F+ G LV +D+ RG+DI +V
Sbjct: 291 TNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAV 350
Query: 377 DIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKL 430
++VIN+D P ++++Y+HR+GR+ R G G +IS +S D + RIE+ LG ++
Sbjct: 351 NVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEI 404
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 185 bits (469), Expect = 2e-46
Identities = 135/396 (34%), Positives = 200/396 (50%), Gaps = 30/396 (7%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
E I+ K PIQ+K G D+I A+TG+GKT +FAIP++ +L + Q
Sbjct: 128 ETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDR 187
Query: 137 ------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+LAPTRELA Q+ + F + + V C GG Q + I++
Sbjct: 188 KRGRAPQVLVLAPTRELANQVSKDFSDITKKLSV--ACFYGGTPYGGQFERMRNGIDILV 245
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII----PTQGRTTY 246
TPGR+ DH++N K +L KLK++V+DE D++LDM F ++ IL++ T
Sbjct: 246 GTPGRIKDHIQNGK-LDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTL 304
Query: 247 LFSATMTSKIDKLQRASLTNPVKCA--VSNKYQTVDTLVQTLMVVPGGLKNTFLIY-LLN 303
LFSAT + + + + + + + K Q V+ L + + +I ++
Sbjct: 305 LFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIR 364
Query: 304 EFIGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
+ G TI+F TK A+ +S + ++ A +LHGD+ Q QR L F+ G +L
Sbjct: 365 VYSGHQGRTIIFCETKKEAQELSQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
VAT+VAARGLDIP VD+VI P D +SYIHR GRT RAGR+G I + +++
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 422 IEDVLGKKLPKENV----------DKDAILALRDSV 447
+E G K + V KDAI L DSV
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAI-RLLDSV 518
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 185 bits (469), Expect = 2e-46
Identities = 114/368 (30%), Positives = 193/368 (51%), Gaps = 7/368 (1%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRE 146
+ KP+PIQ +I AL G DI+ A+ G+GKT A+ IP++ ++ + A ++ PTRE
Sbjct: 63 WEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRE 122
Query: 147 LAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 206
LA Q + L + ++ GG + D L H++IATPGR++D +E KG
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 207 -NLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLT 265
+ K LV+DEAD+LL +F +LDR++N +P + R L+SAT + + + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKE-RQVMLYSATFPNTVTSFMQKHMH 239
Query: 266 NPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISN 325
P + + + T+ + Q V K L L + +I+F + E ++
Sbjct: 240 KPYEINLMEEL-TLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAK 298
Query: 326 LCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIP 385
+ +S +H + QN R F+ G LV +D+ RG+DI +V++VIN+D P
Sbjct: 299 KITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFP 358
Query: 386 VDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP--KENVDKDAILAL 443
++++Y+HR+GR+ R G G +I+L++ D + RIE L ++ + VD +A
Sbjct: 359 RNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVAD 418
Query: 444 RDSVDKAN 451
+ VD A+
Sbjct: 419 QQLVDAAD 426
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 184 bits (468), Expect = 2e-46
Identities = 141/434 (32%), Positives = 215/434 (49%), Gaps = 67/434 (15%)
Query: 85 LNYNKPTPIQSKAIPPALKGSDIIGL--AQTGSGKTAAFAIPILNQL------WHDQQP- 135
+N + PT IQS +P L D AQTGSGKT A+ +PI+ +L H +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 136 YYACILAPTRELAQQIKETFDSLGS---LMGVRSTCIVGGMSMMDQARDLMRKPHIIIAT 192
YA I+APTREL QQI + L + + S ++GG + + + +I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 193 PGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG---------- 242
PGRL DHLENT+ ++ +++++V+DE DRL+DM F L +IL+ + +Q
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIP 336
Query: 243 --RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVD-------TLVQTLMVVPGGL 293
+ T L SATM + +L ++L + + S +T D L+Q +VVP L
Sbjct: 337 SRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKL 396
Query: 294 KNTFLIYLLNEFIG--KSTIVFT-------------RTKANAER---------------I 323
+ L+ LL + K I+F R NA+ I
Sbjct: 397 RLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDII 456
Query: 324 SNLCNLL---EFSATALHGDLNQNQRTGALDLFKAGKRS---ILVATDVAARGLDIPSVD 377
SN L + + LHG L+Q RT L+LF + + S IL+ TDVAARGLD+P+VD
Sbjct: 457 SNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVD 516
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDK 437
+V+ YD P + Y+HR+GRTARAG +G +I + + E I ++ + + ++
Sbjct: 517 LVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGP 576
Query: 438 DAILALRDSVDKAN 451
+L+ S K N
Sbjct: 577 SGLLSAGFSQGKTN 590
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 184 bits (467), Expect = 3e-46
Identities = 120/331 (36%), Positives = 185/331 (55%), Gaps = 20/331 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW----HDQQPYYACILA 142
+ K T +Q K IP LKG D++ + TG+GKT AF PIL+ ++ + A ++
Sbjct: 24 FGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVIT 83
Query: 143 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHL-E 201
PTRELA QI+E + L V+ C +GGMS+ + + + + I + TPGRL++ + +
Sbjct: 84 PTRELALQIRE----VAGLFDVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGK 139
Query: 202 NTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQR 261
TK F+ L +LV+DEAD+LL F L ++L +P + R T LFSAT +DKL R
Sbjct: 140 ETKKFS--SLSHLVLDEADKLLGFGFEEKLMQLLAKLP-RNRVTGLFSATRNDSVDKLSR 196
Query: 262 ASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAE 321
L NPV V N V ++ ++V P L+ L++ G+ IVF T + +
Sbjct: 197 VFLRNPVSINVGNNEMPV--ALEYIVVSP----MEKLLVLMDIVTGRRCIVFFATCSEVD 250
Query: 322 RISNLCNLLEF-SATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVI 380
S L + F + +HG ++Q++R + F + +L TDVAARG+D VD+V+
Sbjct: 251 FFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQ-RDGLLFCTDVAARGIDFRGVDLVV 309
Query: 381 NYDIPVDSKSYIHRVGRTARAGRSGKSISLV 411
++D+P + S +HR GRTAR G G+S+ V
Sbjct: 310 HFDVPKEYSSIVHRSGRTARNGSKGESVLFV 340
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 184 bits (466), Expect = 3e-46
Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 37/388 (9%)
Query: 90 PTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL----WHDQQPYYACILAPTR 145
PT +Q +I PAL+G D++G A TGSGKT AF IP+L L W A I++PTR
Sbjct: 95 PTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTR 154
Query: 146 ELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKG 205
ELA QI ET +G + I+GG ++ + R M + +I+I TPGRL+ H++
Sbjct: 155 ELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFE-RTRMDQCNILICTPGRLLQHMDENPL 213
Query: 206 FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLT 265
FN ++ LV+DEADR LDM F L+ I+ P R T LFSAT T+ + L R +L
Sbjct: 214 FNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPV-RQTLLFSATQTNTVQDLARLNLK 272
Query: 266 NPVKCAVSN-------KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG----------- 307
+PV T T ++ VP L+ ++++ L + I
Sbjct: 273 DPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLK 332
Query: 308 KSTIVFTRTKANAERISNL-CNLLEFSAT-ALHGDLNQNQRTGALDLFKAGKRSILVATD 365
+ IVF + A+ + + C L S AL+G L+Q++R + F ++ +TD
Sbjct: 333 QKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTD 392
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-----------QY 414
VA+RGLD P+V+ V+ D P D YIHR GR+AR G+ + +++ +
Sbjct: 393 VASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKE 452
Query: 415 DLELILRIEDVLGKKLPKENVDKDAILA 442
L + +R + KKL V +A LA
Sbjct: 453 QLNIDIRCVQIDPKKLFSPRVKIEAFLA 480
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 183 bits (464), Expect = 6e-46
Identities = 134/451 (29%), Positives = 217/451 (47%), Gaps = 73/451 (16%)
Query: 106 DIIGLAQTGSGKTAAFAIPILNQLW-HDQQPYYACILAPTRELAQQIKETFDSLGSLMGV 164
DI + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+K+ FD++ +G+
Sbjct: 26 DICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGL 85
Query: 165 RSTCIVGGMSMMDQARDLMRKPH---------------------IIIATPGRLMDHLENT 203
VG S+ + L++ P I++ATPGRLMDH+ NT
Sbjct: 86 SVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNT 145
Query: 204 KGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY----------------- 246
KGF L L+YLV+DE DRLL + L +L + T + +
Sbjct: 146 KGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTV 205
Query: 247 --------------------LFSATMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQT 285
+ SAT+T KL + L +P+ ++Y+ + L
Sbjct: 206 RRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECL 265
Query: 286 LMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEF------SATALHG 339
++ G+K +L+ LL + G+ I+FT ++ E LC LL F A G
Sbjct: 266 RLICETGMKPVYLVALLKSWEGEKCIIFT---SSVETTRRLCKLLNFFGDPKIKAKEYSG 322
Query: 340 DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTA 399
LNQ+ R+ L F+ G +LVA+D RG+D+ V VINYD+P +K++IHR GRTA
Sbjct: 323 GLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTA 382
Query: 400 RAGRSGKSISLVSQYDLELILRIEDVLGK-KLPKENVDKDAILALRDSVDKANGEV--VM 456
RAG++G+ +L+S +++ ++ + +G P + ++ ++R + A ++ ++
Sbjct: 383 RAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELV 442
Query: 457 ELNRRNKEKQA-RGKGRRGRMATRDNMDREE 486
E K +QA R R G T+ N R E
Sbjct: 443 ESEAPKKGRQAFRHNSRTGNSQTKLNKPRSE 473
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 183 bits (464), Expect = 6e-46
Identities = 109/364 (29%), Positives = 194/364 (52%), Gaps = 9/364 (2%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
+++ + Y KP+ IQ +A+ P LKG D+I AQ+G+GKT+ AI + + +
Sbjct: 32 KVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKV 91
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
+L+P+RELA Q ++T ++G+ +++ +GG S+ + + L R H + TPGR+
Sbjct: 92 QVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRV 151
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
D ++ + +K LV+DE+D +L + + +P + L SAT+ +I
Sbjct: 152 YDMIKRGS-LQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVC-LISATLPQEI 209
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTI----V 312
++ +T+PV+ V T++ + Q + V K + L + G+ TI +
Sbjct: 210 LEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVD---KEEWKFDTLCDLYGRLTINQAII 266
Query: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372
F T+ + ++ F +++HGD Q +R ++ F++ K +L+A+DV ARG+D
Sbjct: 267 FCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGID 326
Query: 373 IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPK 432
+ +V VINYDIP + + YIHR+GR R GR G +I+ V D++ + IE G K+ +
Sbjct: 327 VQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIRE 386
Query: 433 ENVD 436
D
Sbjct: 387 MPAD 390
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 182 bits (463), Expect = 8e-46
Identities = 140/433 (32%), Positives = 206/433 (47%), Gaps = 34/433 (7%)
Query: 19 AEKIKRKALEKQQQAHANEPS-PSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPE 77
+EK K K +K+++A E SD S + S +
Sbjct: 47 SEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAP 106
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL-------- 129
L E K PIQ+ L G+D++G A+TG GKT AF +PIL L
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSK 166
Query: 130 ---WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP 186
+ + P +L PTRELA+Q+ FD+ G +G+ S C+ GG S Q L R
Sbjct: 167 RKMGYGRSPS-VLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225
Query: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT-T 245
I++ TPGR+ DH+E + + L++ V+DEAD +L M F ++ IL + + T
Sbjct: 226 DIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQT 284
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCA--VSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN 303
LFSAT+ S + + L K V N V+ + + + L+
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIP---CNKAAMARLIP 341
Query: 304 EFI-----GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
+ I G TI+F TK +S L + + ALHG++ Q+QR L F+ GK
Sbjct: 342 DIISCYSSGGQTIIFAETKVQVSELSGLLD----GSRALHGEIPQSQREVTLAGFRNGKF 397
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD--L 416
+ LVAT+VAARGLDI V ++I + P + ++YIHR GRT RAG +G +++L YD
Sbjct: 398 ATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL---YDSRK 454
Query: 417 ELILRIEDVLGKK 429
+ RIE G K
Sbjct: 455 SSVSRIEKEAGIK 467
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 182 bits (461), Expect = 1e-45
Identities = 129/390 (33%), Positives = 198/390 (50%), Gaps = 25/390 (6%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
E I+ K PIQ K P +G D+I A+TG+GKT +FAIP++ +L +Q+
Sbjct: 147 ETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETI 206
Query: 137 Y------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+LAPTRELA Q+ + F + + V C GG S Q + I++
Sbjct: 207 KKSRSPKVLVLAPTRELANQVAKDFKDITRKLSV--ACFYGGTSYQSQINHIRNGIDILV 264
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILN----IIPTQGRTTY 246
TPGR+ DHL++ + +L KL+++V+DE D++LD+ F ++ I++ T
Sbjct: 265 GTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTL 323
Query: 247 LFSATMTSKIDKLQRASLTNPVKCA--VSNKYQTVDTLVQTLMVV------PGGLKNTFL 298
LFSAT + K+ + + + + V Q T V+ L + P + +
Sbjct: 324 LFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQ 383
Query: 299 IYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR 358
+Y +E G++ I+F TK N ++ ++ + +A LHGD+ Q+QR L F+ G
Sbjct: 384 VYSGSE--GRA-IIFCETKKNVTEMAMNPHIKQ-NAQCLHGDIAQSQREITLKGFREGSF 439
Query: 359 SILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLEL 418
+LVAT+VAARGLDIP VD+VI P D +SYIHR GRT RAGR+G I +
Sbjct: 440 KVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQ 499
Query: 419 ILRIEDVLGKKLPKENVDKDAILALRDSVD 448
+ +E G + V L S+D
Sbjct: 500 LRYVEQKAGITFKRVGVPSTMDLVKSKSMD 529
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 182 bits (461), Expect = 1e-45
Identities = 131/395 (33%), Positives = 204/395 (51%), Gaps = 53/395 (13%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKG-SDIIGLAQTGSGKTAAFAIPILNQLWHDQQP 135
E++EA + + +++PT IQS +P A++ D++G A+TGSGKT AF IP++ +L
Sbjct: 165 EVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDD 224
Query: 136 YY-----------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL-M 183
A I+APTREL QI + ++L S + +T IVGG++ + Q R +
Sbjct: 225 SQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQ 284
Query: 184 RKPHIIIATPGRLMDHLENTKGFNL----RKLKYLVMDEADRLLDMEFGPVLDRILNIIP 239
++P I++ATPGRL ++ + + LK LV+DE DR+++ + L ILN I
Sbjct: 285 QRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIH 344
Query: 240 TQGRT----TYLFSATMT------------------SKIDKLQRASLTNPVKCAVSNKYQ 277
+ T +FSAT+T S K+QR ++ NK++
Sbjct: 345 EESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLR---ENKHK 401
Query: 278 TVDTLVQT--------LMVVPGGL--KNTFLIYLLNEFIGKSTIVFTRTKANAERISNLC 327
+D Q + G L K+T L+YLL + G+ TIVF + A R+ ++
Sbjct: 402 VIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGR-TIVFVNSIDAARRLYSVL 460
Query: 328 NLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVD 387
+ LH + Q QR L+ F K ++L+ATDVAARGLDI +D VI+Y +P
Sbjct: 461 KSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKK 520
Query: 388 SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 422
+ YIHR GRTARA G ++ LV + +++
Sbjct: 521 VEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKL 555
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 181 bits (460), Expect = 2e-45
Identities = 114/370 (30%), Positives = 196/370 (52%), Gaps = 8/370 (2%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
EL+ + + KP+PIQ ++IP AL G DI+ A+ G+GK+ A+ IP+L +L +
Sbjct: 95 ELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI 154
Query: 137 YACILAPTRELAQQIKETFDSLGSLMG-VRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
A ++ PTRELA Q+ + + MG + GG ++ D L H++IATPGR
Sbjct: 155 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR 214
Query: 196 LMDHLENTKGF-NLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTS 254
++D ++ KG + ++ +V+DEAD+LL +F +++ I+ +P + R L+SAT
Sbjct: 215 ILDLIK--KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNRQILLYSATFPL 271
Query: 255 KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFT 314
+ K + L P + + + T+ + Q V K L L + +I+F
Sbjct: 272 SVQKFMNSHLQKPYEINLMEEL-TLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFC 330
Query: 315 RTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIP 374
+ E ++ + L +S +H + Q R F+ G LV TD+ RG+DI
Sbjct: 331 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 390
Query: 375 SVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLP--K 432
+V++VIN+D P +++Y+HR+GR+ R G G +I+L++ D + IE+ LG ++
Sbjct: 391 AVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIP 450
Query: 433 ENVDKDAILA 442
N+DK +A
Sbjct: 451 SNIDKSLYVA 460
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 181 bits (458), Expect = 3e-45
Identities = 129/354 (36%), Positives = 193/354 (54%), Gaps = 26/354 (7%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILN--QLWHDQQP 135
+++ ++ + + TP+Q+ AIP L D+ A TGSGKT AF +P+L Q H + P
Sbjct: 18 VLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETP 77
Query: 136 YY-----ACILAPTRELAQQIKET---FDSLGSLMGVRSTCIVGGMSMMDQARDLMRK-P 186
+ A +++PTRELA+QI E F L + IVGG S+ + L R+ P
Sbjct: 78 WGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETP 137
Query: 187 HIIIATPGRLMDHLENTKGFNL------RKLKYLVMDEADRLLDMEFGPVLDRILNIIPT 240
I++ TPGRL D L KG +L + L++LV+DEADRLLD+ F ++ IL +P
Sbjct: 138 CILVCTPGRLED-LFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPR 196
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK--YQTVDTLVQTLMVVPGGLKNTFL 298
Q RT LFSAT T+++ L RA L NPV +V K T L +V LK L
Sbjct: 197 QRRTG-LFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFVAL 255
Query: 299 IYLLNE---FIGKSTIVFTRTKANAERISNLCNLL-EFSATALHGDLNQNQRTGALDLFK 354
+ L+ IGK + F L LL + + +HG + +N+R ++ F+
Sbjct: 256 LEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKM-KNKRANVVEKFR 314
Query: 355 AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
+++L+ TDV ARGLD+P ++ V+ +D P + S++HRVGRTAR G G ++
Sbjct: 315 NTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNAL 368
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 180 bits (457), Expect = 4e-45
Identities = 124/349 (35%), Positives = 179/349 (50%), Gaps = 22/349 (6%)
Query: 73 DLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD 132
DL L+ Y+ PT IQ IP + G ++I A TG GKT F IPI+ +
Sbjct: 103 DLCSPLLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIERHRQM 162
Query: 133 QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIAT 192
++P ACI++PTREL +QI+ L + +R I G + + I++AT
Sbjct: 163 KKPQ-ACIISPTRELCEQIRVEASKLVAGSRIRVVSIYGKKQDLPSYSGV----DIVVAT 217
Query: 193 PGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATM 252
PGRL+D L K +L +++ V+DEAD+LLDM F + I +P +T LFSAT
Sbjct: 218 PGRLIDLLHRKK-VDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVPKNTQTC-LFSATY 275
Query: 253 TSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN--------- 303
+ K+ ++ L K ++ +T+ + Q ++ V K L+ +L
Sbjct: 276 SPKLTRMINYFLPED-KVSIEISSETLKNIRQEIVEVRN--KKKMLLNILKGPDINLKGS 332
Query: 304 ---EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
E +VF K+ + + +LHGD Q R AL F+ G+ +
Sbjct: 333 WRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPV 392
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSIS 409
+VAT VAARG+DI V +VINYDIP D K YIHR+GRT R G+SGKSIS
Sbjct: 393 MVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKSIS 441
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 179 bits (455), Expect = 6e-45
Identities = 129/366 (35%), Positives = 187/366 (50%), Gaps = 28/366 (7%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP--------YYA 138
Y+K TPIQ A+P +G DI+ AQTGSGKTAAF +PI+ +L D Y
Sbjct: 361 YSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPR 420
Query: 139 CI-LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
CI L PTRELA QI + + GG+++ + + II+ T GR+
Sbjct: 421 CIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIK 480
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNI--IPT-QGRTTYLFSATMT 253
E L K ++ V+DEADR++D M FG ++ I+N +P + R T +FSAT
Sbjct: 481 HFCEEGT-IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFP 539
Query: 254 SKIDKLQRASLT-NPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLN--------- 303
+ + RA L N V A+ ++Q K L+ LL
Sbjct: 540 DSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTE 599
Query: 304 ---EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
E K T+VF +A A+ ++++ + + A +HG Q +R+ AL F+ G + +
Sbjct: 600 KSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 659
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
L+AT VA RGLDI VD VINYD+P + YIHR+GRT R G SG++ S +S+ D L+
Sbjct: 660 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISE-DCSLLS 718
Query: 421 RIEDVL 426
+ VL
Sbjct: 719 ELVGVL 724
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 179 bits (454), Expect = 8e-45
Identities = 131/419 (31%), Positives = 211/419 (50%), Gaps = 33/419 (7%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-HDQQPY 136
L E K N + T IQ AIP D++ A TGSGKT A+ PIL +L H Y
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIV-GGMSMMDQARDLMRKPHIIIATPGR 195
A I+APTREL +QI + L ++ + + ++A L K + I TP R
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR 176
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
L+ ++ G + K+++ VMDEADRL + F D IL+ + LFSAT+ S+
Sbjct: 177 LVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSR 234
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS-----T 310
+++L + +P++ V K D++ Q L+ V +T I +L + I
Sbjct: 235 VEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGS---DTSKIVILRQMISNGELKPRV 291
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F + A+ + E +HG+L Q +R AL F+ G+ +L+ATD+ ARG
Sbjct: 292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARG 351
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL---G 427
+D V +VIN+D P SYIHR+GRT RAG +G++++ ++ D E I I V+ G
Sbjct: 352 IDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSG 411
Query: 428 KKLPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGRMATRDNMDREE 486
++P + ++AL + ++ K+K + +R R+ TR + DR++
Sbjct: 412 CEVP------NWVMAL------------PKPSKEMKKKLKKSPPKRKRITTRASYDRQK 452
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 179 bits (454), Expect = 8e-45
Identities = 114/358 (31%), Positives = 192/358 (52%), Gaps = 9/358 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q IP ++ G+D++ A++G GKTA F + L Q+
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 134 QPYYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMSM---MDQARDLMRKPHII 189
+L TRELA QIK + L VR+ GG+++ M+ +D + PHI+
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLF 248
+ATPGRL + L K + +K+ V+DE D+LL+ ++ + + P Q + +F
Sbjct: 178 VATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQ-KQVMMF 235
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307
SAT++++I + + + NP++ V ++ + T+ L Q + + KN + LL+
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEF 295
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
++F ++ + A + L F + +HG L Q +R FK + I VATDV
Sbjct: 296 NQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVF 355
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISL-VSQYDLELILRIED 424
RG+DI V+IVINYD+P SY+HRVGR R G G +I+ S+ D +++ +I++
Sbjct: 356 GRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQE 413
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 179 bits (453), Expect = 1e-44
Identities = 128/417 (30%), Positives = 213/417 (50%), Gaps = 35/417 (8%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP--YYACILAPT 144
+ +PTPIQ + IP AL D++ TGSGKT AF IP++ Q+ D+Q I++PT
Sbjct: 142 FTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPT 201
Query: 145 RELAQQI---------KETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
+ELA QI K + L + +G D +K III+TP R
Sbjct: 202 KELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSD--KKYDIIISTPLR 259
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
L+D ++N + +L K+K+L+ DEAD+L D F D IL+ +FSAT+ S
Sbjct: 260 LIDVVKN-EALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSN 318
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI--YLLNEFIGK-STIV 312
++++ ++ + +PV+ + +K + +T ++ ++ G + + L+ E K I+
Sbjct: 319 VEEIAQSIMMDPVRVIIGHK-EAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIII 377
Query: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372
F + A+ + + + +H + QR ++ FK G+ L+ TDV ARG+D
Sbjct: 378 FLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGID 437
Query: 373 IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPK 432
V++VINYD+P S++Y+HR+GRT R GRSGK+I+ ++ D I P
Sbjct: 438 FKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAI----------KPI 487
Query: 433 ENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARGKGRRGR--MATRDNMDREER 487
NV K + + + +DK + ++ R+ KE GK + R + T MD+ +R
Sbjct: 488 INVMKQSGCEVSEWMDK-----MAKMTRKEKESIKNGKAHKERKQITTVPKMDKAKR 539
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 179 bits (453), Expect = 1e-44
Identities = 114/356 (32%), Positives = 189/356 (53%), Gaps = 7/356 (1%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PE++ A + + P+ +Q + IP A+ G D++ A++G GKTA F I L QL
Sbjct: 48 LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 107
Query: 134 QPYYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMSMM-DQARDLMRKPHIIIA 191
+ TRELA QI + ++ L GV+ GGM++ D+ R PHI++
Sbjct: 108 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 167
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLL-DMEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ + K L K+KY V+DE D+++ D + + I+ + P Q + +FSA
Sbjct: 168 TPGRMLALARSGK-LKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQ-KQVMMFSA 225
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T+ ++ + + + +P++ V ++ + T+ L Q + + KN L+ LL+
Sbjct: 226 TLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQ 285
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F + E + L F + A+H + Q +R FK ++ ILVATD+ R
Sbjct: 286 VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGR 345
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRIED 424
G+DI V+IV NYD+P DS SY+HRV R R G G +I+ VS + D + + ++D
Sbjct: 346 GMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQD 401
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 178 bits (452), Expect = 1e-44
Identities = 120/378 (31%), Positives = 195/378 (50%), Gaps = 12/378 (3%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL A + + P+ +Q IP ++ G+D++ A++G GKTA F + L QL
Sbjct: 69 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 128
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRK---PHII 189
++ RELA QI+ + M V++ GG + A L K PHI+
Sbjct: 129 GEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLF 248
+ATPGRL L K +L +K V+DE D++L+ ++ + I P + + +F
Sbjct: 189 VATPGRLKA-LVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATP-RDKQVMMF 246
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307
SAT++ +I + R L NP++ V ++ + T+ L Q + + KN L LL++
Sbjct: 247 SATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEF 306
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
I+F ++ A ++ L N F A +HG + Q +R FK ++ I V+TDV
Sbjct: 307 NQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVF 366
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV-SQYDLELILRIE--- 423
RG+DI +++ INYD+ ++ Y+HRVGR R G G +IS V S+ D E++ +I+
Sbjct: 367 GRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERF 426
Query: 424 DVLGKKLPKENVDKDAIL 441
DV + P+E +D L
Sbjct: 427 DVKIAEFPEEGIDPSTYL 444
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 178 bits (452), Expect = 1e-44
Identities = 111/355 (31%), Positives = 187/355 (52%), Gaps = 11/355 (3%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
EL+ + +P+PIQ ++IP AL G DI+ A+ G+GKTAAF IP+L ++ D
Sbjct: 141 ELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVI 200
Query: 137 YA-CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
C+L T ++ ++ LG + ++ GG S+ D L + H+++ TPGR
Sbjct: 201 QGNCVLDHTSQVCKE-------LGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGR 253
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
++D L L+ LVMDEAD+LL EF P ++ +++ +P + R +FSAT
Sbjct: 254 ILD-LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP-ESRQILMFSATFPVT 311
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTR 315
+ + LTNP + ++ T+ + Q V K L L ++ +I+F
Sbjct: 312 VKDFKDRFLTNPYVINLMDEL-TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCN 370
Query: 316 TKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPS 375
+ E ++ L +S +H + Q+ R F+ G LV TD+ RG+DI +
Sbjct: 371 SVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 430
Query: 376 VDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKL 430
V++VIN+D P ++++Y+HRVGR+ R G G +++L++ D + RIE LG ++
Sbjct: 431 VNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI 485
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 178 bits (452), Expect = 1e-44
Identities = 117/369 (31%), Positives = 196/369 (52%), Gaps = 11/369 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-HD 132
L PE++ A + + P+ +Q + IP A+ G DI+ A++G GKTA F + L QL D
Sbjct: 48 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSD 107
Query: 133 QQPYYACILAPTRELAQQIKETFDSLGSLMG-VRSTCIVGGMSMMDQARDLMR-KPHIII 190
+ ++ TRELA QI + ++ M V+ GGM++ L PHI++
Sbjct: 108 NNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVV 167
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFS 249
TPGR++ + N K NL+ LK+ V+DE D++L+ ++ + I P G+ +FS
Sbjct: 168 GTPGRILALIRNKK-LNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTP-HGKQVMMFS 225
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK 308
AT++ I + + + +P++ V ++ + T+ L Q + + KN L LL+
Sbjct: 226 ATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFN 285
Query: 309 STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAA 368
++F ++ +S L F A +H + Q +R FK ++ ILVAT++
Sbjct: 286 QVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFG 345
Query: 369 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRIE---D 424
RG+DI V+IV NYD+P DS +Y+HRV R R G G +I+ VS + D +++ ++ D
Sbjct: 346 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFD 405
Query: 425 VLGKKLPKE 433
V +LP+E
Sbjct: 406 VNISELPEE 414
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 178 bits (451), Expect = 2e-44
Identities = 130/379 (34%), Positives = 196/379 (51%), Gaps = 33/379 (8%)
Query: 72 LDLVPE--LIEACKNLNYNKPTPIQSKAIPPALKGS---DIIGLAQTGSGKTAAFAIPIL 126
L+++P L + L + PTPIQ IP D +G+A TGSGKT AF IPIL
Sbjct: 177 LNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPIL 236
Query: 127 NQLWHD--QQPYY-------ACILAPTRELAQQIKETFDSLGSLMGVRST------CIVG 171
++ + P A ILAPTREL QQI++ + + S IVG
Sbjct: 237 IKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVG 296
Query: 172 GMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVL 231
G S+ + + L I++ATPGRL+D LEN +++++ LV+DEAD+++D+ F +
Sbjct: 297 GHSLEEISFSLSEGCDILVATPGRLIDSLENHL-LVMKQVETLVLDEADKMIDLGFEDQV 355
Query: 232 DRIL-----NIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTL 286
IL N R T +F+ATMT I+K+ + PV + + + + L+Q +
Sbjct: 356 TNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGS-EPLIQQV 414
Query: 287 MVVPGGLKNTFLIYLLNEFIGK---STIVFTRTKANAERISNLCNL-LEFSATALHGDLN 342
+ ++ F L + K I+F K A+ ++ T LHG +
Sbjct: 415 VEYADNDEDKFK--KLKPIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKS 472
Query: 343 QNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
Q QR +L LF+ K I++AT+VAARGLDIP+V +V+N+ I YIHR+GRT RA
Sbjct: 473 QEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAA 532
Query: 403 RSGKSISLVSQYDLELILR 421
G ++S VS + E ++R
Sbjct: 533 NEGTAVSFVSAAEDESLIR 551
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 177 bits (450), Expect = 2e-44
Identities = 139/485 (28%), Positives = 227/485 (46%), Gaps = 81/485 (16%)
Query: 5 EKKQAVKNNQVLSLAEKIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXX 64
+ ++ K + + K K+K +K++Q NE + + + SA +
Sbjct: 126 DDEETRKKKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAAVSCDGDDTVEEQVEEEE 185
Query: 65 X---XXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIP-PALKGSDIIGLAQTGSGKTAA 120
+ L P L+++ L++ +PT IQ A +G D+IG A+TGSGKT A
Sbjct: 186 IPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLA 245
Query: 121 FAIPILNQLWHDQQPY--------------------YACILAPTRELAQQIKETFDSLGS 160
F +PIL +L +++ A I+ PTRELA Q+ E ++
Sbjct: 246 FGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAK 305
Query: 161 LMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKG--FNLRKLKYLVMDE 218
+ V+ IVGGM Q R L KP I++ATPGRL + + + L L + V+DE
Sbjct: 306 NLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDE 365
Query: 219 ADRLLD----------MEFGPVLDR--------------ILNIIPTQGRTTYLFSATMTS 254
ADR+++ ++ PV D+ +LN +P + R T++FSAT+
Sbjct: 366 ADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLN-VPKKKRQTFVFSATIAL 424
Query: 255 KID---KLQRASLTNPVKCAVSNKYQTVDTLVQ---------------TLMVVP------ 290
D KL+R S + K + S + +++ L + T ++ P
Sbjct: 425 SSDFRKKLKRGS--SKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESF 482
Query: 291 ----GGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQR 346
K+ +L Y+L+ TIVF + + IS L +L L ++ Q R
Sbjct: 483 IKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRAR 542
Query: 347 TGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 406
++D F+A + IL+ATD+ ARG+DI +V +I+Y +P ++ Y+HR GRTARA G
Sbjct: 543 LKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGC 602
Query: 407 SISLV 411
SI+L+
Sbjct: 603 SIALI 607
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 177 bits (448), Expect = 4e-44
Identities = 114/368 (30%), Positives = 199/368 (53%), Gaps = 10/368 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q + IP A+ G D++ A++G GKTA F + L Q+
Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 110
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRK-PHIIIA 191
++ TRELA QI + ++ M V+ + GG+S+ L + PH+++
Sbjct: 111 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 170
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ + N + F+L+ +K+ V+DE D++L+ ++ + I + P + + +FSA
Sbjct: 171 TPGRILALVRN-RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHE-KQCMMFSA 228
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T++ I + R + +P++ V ++ + T+ L Q + + KN L LL+
Sbjct: 229 TLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ 288
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
I+F ++ ++ L F A A+H + Q +R FK +R ILVAT++ R
Sbjct: 289 VIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRIED---V 425
G+DI V+IV NYD+P DS +Y+HRV R R G G +I+ VS + D +++ ++D V
Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 408
Query: 426 LGKKLPKE 433
+LP+E
Sbjct: 409 NVAELPEE 416
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 176 bits (446), Expect = 7e-44
Identities = 112/359 (31%), Positives = 185/359 (51%), Gaps = 6/359 (1%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
EL+ + +P+PIQ AIP AL G D++ A+ G+GKT A+ IP+L Q+ +
Sbjct: 67 ELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYI 126
Query: 137 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
A ++ PTRELA Q + L + +R GG + D + +K +IIATPGR+
Sbjct: 127 QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRI 186
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI 256
+D L + K ++ + LV+DEAD+LL ++F +LD ++ +P + LFSAT +
Sbjct: 187 LD-LMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ-ILLFSATFPLTV 244
Query: 257 DKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRT 316
L P + + + T+ + Q V K L L ++ +I+F +
Sbjct: 245 KNFMEKHLREPYEINLMEEL-TLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNS 303
Query: 317 KANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV 376
E ++ L + +H + Q R F+ G LV +D+ RG+D+ +V
Sbjct: 304 TQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAV 363
Query: 377 DIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLG---KKLPK 432
++VIN+D P +++Y+HR+GR+ R G G +I+L++ D + RIE LG K +PK
Sbjct: 364 NVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPK 422
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 176 bits (445), Expect = 9e-44
Identities = 124/378 (32%), Positives = 191/378 (49%), Gaps = 37/378 (9%)
Query: 80 EACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYAC 139
E +L KP P Q++ L L Q K+A + ++P
Sbjct: 339 EGPSSLIREKPVPKQNENEEENLDKEQTGNLKQELDDKSATCKA-------YPKRPLLGL 391
Query: 140 ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDH 199
+L PTRELA Q+K+ D++ G+++ +VGGMS Q R L R+P I++ATPGRL +
Sbjct: 392 VLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWEL 451
Query: 200 LENTKGF--NLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG----RTTYLFSATMT 253
++ NLR+L+ LV+DEADR+++ L ++L ++ R T +FSAT+T
Sbjct: 452 IKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLT 511
Query: 254 ---------------SKIDKLQRASLT--------NPVKCAVSNKYQTVDTLVQTLMVVP 290
K+DK + L P ++ TV+TL +T +
Sbjct: 512 LVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCE 571
Query: 291 GGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGAL 350
K+ +L Y L ++ G+S +VF + + +R+S L +L+ LH ++Q QR L
Sbjct: 572 TDEKDFYLYYFLMQYPGRS-LVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNL 630
Query: 351 DLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISL 410
+ F + +L+ATDVAARGLDIP V VI+Y +P S+ Y+HR GRTARA G S+ L
Sbjct: 631 EQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLML 690
Query: 411 VSQYDLELILRIEDVLGK 428
+ D+ +I L K
Sbjct: 691 IGPEDVINFKKIYKTLKK 708
Score = 51.6 bits (122), Expect = 3e-06
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGS-DIIGLAQTGSGKTAAFAIPILN 127
++ A L ++ PTPIQ+ + PA++ DI+G A+TGSGKT AFAIP+++
Sbjct: 203 VLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIH 253
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 176 bits (445), Expect = 9e-44
Identities = 113/368 (30%), Positives = 200/368 (53%), Gaps = 10/368 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q + IP A+ G D+I A++G GKTA F + L Q+
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK--PHIIIA 191
A +L TRELA QI F + + + G + +DL++ PHI++
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ L K +L+ +++ ++DE D++L+ ++ + I + P + +FSA
Sbjct: 173 TPGRVLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSA 230
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T++ +I + + + +P++ V ++ + T+ LVQ + + KN L LL+
Sbjct: 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQ 290
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F ++ + A ++ L F + +H ++Q +R FK G + ILVATD+ R
Sbjct: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 350
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV-SQYDLELILRIE---DV 425
G+DI V+IVINYD+P + +Y+HRVGR R G G +I+ V S D E++ +++ +V
Sbjct: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEV 410
Query: 426 LGKKLPKE 433
K+LP++
Sbjct: 411 DIKELPEQ 418
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 175 bits (444), Expect = 1e-43
Identities = 110/356 (30%), Positives = 190/356 (52%), Gaps = 7/356 (1%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q + IP A+ G D++ A++G GKTA F + L QL
Sbjct: 52 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRK-PHIIIA 191
++ TRELA QI + ++ M V+ GG+S+ L + PHI++
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ L K NL+ +K+ ++DE D++L+ ++ + I + P + + +FSA
Sbjct: 172 TPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE-KQVMMFSA 229
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T++ +I + R + +P++ V ++ + T+ L Q + + KN L LL+
Sbjct: 230 TLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 289
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F ++ ++ L F A A+H + Q +R FK +R ILVAT++ R
Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS-QYDLELILRIED 424
G+DI V+I NYD+P DS +Y+HRV R R G G +I+ VS + D +++ ++D
Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 405
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 175 bits (444), Expect = 1e-43
Identities = 132/409 (32%), Positives = 199/409 (48%), Gaps = 64/409 (15%)
Query: 72 LDLVPELIEACKN-LNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
L L P LI L + T +Q ++IP L+G D + +QTGSGKT A+ IP++ L
Sbjct: 235 LGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQ 294
Query: 131 HDQQPY------YACILAPTRELAQQIKETFDSLGSLMG----VRSTCIVGGMSMMDQAR 180
+ YA +L PTRELA Q +FD++ L+ + ++GG +
Sbjct: 295 AMESKIQRSDGPYALVLVPTRELALQ---SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKA 351
Query: 181 DLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII-- 238
L + +I+I+TPGRL+DH+++TK + +L++LV DEADR+LD+ F + ILN +
Sbjct: 352 RLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNA 411
Query: 239 PTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK----YQTVDTLVQTLMVVPGGLK 294
Q R L SAT+T + +L SL +PV +V +K D VQ + P G K
Sbjct: 412 ECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDK 471
Query: 295 -NTFLI-YLLNEFI----GKSTIV----FTRTKANAERISNL------CNLLEFSAT--- 335
++F I L + + K +V F K E + C L+EF +
Sbjct: 472 LDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFL 531
Query: 336 -------------------------ALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
LHG + Q +RT F +R +L+ TDVAARG
Sbjct: 532 QTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARG 591
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 419
LD+P V ++ Y+ P YIHR+GRTAR G G S+ +++ + E +
Sbjct: 592 LDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYV 640
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 175 bits (443), Expect = 2e-43
Identities = 129/436 (29%), Positives = 206/436 (46%), Gaps = 38/436 (8%)
Query: 83 KNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-------HDQQP 135
+ L++ TPIQS+A+P + G D+IG+++TGSGKT ++ +P+L Q+ H+ P
Sbjct: 272 EKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGP 331
Query: 136 YYACILAPTRELAQQIKETFDSLGSL-MGVRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
ILAPTRELA QI E +RS C GG M Q DL R I++ATPG
Sbjct: 332 M-GLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPG 390
Query: 195 RLMDHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATM 252
R +D L G + +++ ++VMDEADRL D+ F P + +I+ + + LFSAT
Sbjct: 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPD-KQCVLFSATF 449
Query: 253 TSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKN----TFLIYLLNEFIGK 308
+K+ L +P+ +++K + + Q + + LI+ +EF +
Sbjct: 450 PNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDE 509
Query: 309 STIVFTRTKANAERIS----------NLCNLLE-------FSATALHGDLNQNQRTGALD 351
++ E + N+C+ + A+H +R L+
Sbjct: 510 VQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLE 569
Query: 352 LFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 411
FK K SIL+ T+V +RGL++P V +VI Y+ Y+H GRTAR RSG +I+L+
Sbjct: 570 KFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLL 629
Query: 412 SQYDLELILRIEDVLGKKLPKENVDK-DAILALRDSVDKANGEVVMELNRRNKEKQARGK 470
+L +L K + E + D + A A E M+ + K GK
Sbjct: 630 LHDELSGAY----ILSKAMRDEEIKALDPLQAKELQEMSAKFESGMKKGKFRLSKGFGGK 685
Query: 471 GRRGRMATRDNMDREE 486
G + R+ ++
Sbjct: 686 GLENIKSKREEAQNKD 701
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 174 bits (440), Expect = 3e-43
Identities = 138/441 (31%), Positives = 211/441 (47%), Gaps = 50/441 (11%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSD--IIGLAQTGSGKTAAFAIPI----LNQLW 130
E+ +A + + TP+Q K I P L D +I A+TG+GKT AF IPI +N +
Sbjct: 116 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 175
Query: 131 HDQQPYYACILAPTRELAQQI----KETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR-K 185
Q A I+APTR+LA QI K+ D L +VGG + + +
Sbjct: 176 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 235
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT- 244
P+I+IATPGRL+D LE R + Y V+DEADRLL++ F L+ I I+ +
Sbjct: 236 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 295
Query: 245 -----TYLFSATMTSKIDKLQRASLTNPVKC----AVSNKYQTVDTLVQTLMVVPGGLKN 295
T LFSAT+ K+ KL ++ N +C V + +V+ N
Sbjct: 296 ADNIKTLLFSATLDDKVQKLAN-NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFAN 354
Query: 296 TFLIYLLNEFIGKS---------TIVFTRTKANAERISNLCNLL------EFSATALHGD 340
+ I+ E I K I+F T + S LC++L + HG
Sbjct: 355 S--IFAAVEHIKKQIKERDSNYKAIIFAPT---VKFTSFLCSILKNEFKKDLPILEFHGK 409
Query: 341 LNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTAR 400
+ QN+RT + FK + ILV TDV ARG+D P+V V+ +P + +YIHR+GRTAR
Sbjct: 410 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 469
Query: 401 AGRSGKSISLVSQYDLELILRIEDVLG-------KKLPKENVDKDAILALRDSVDKANGE 453
+G+ G S+ + + +L + +ED K P E + + + A+ + + +
Sbjct: 470 SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDI 529
Query: 454 VVMELNR-RNKEKQARGKGRR 473
V+ ++ R+ K+ R RR
Sbjct: 530 VISLISSYRSCIKEYRFSERR 550
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 174 bits (440), Expect = 3e-43
Identities = 122/381 (32%), Positives = 191/381 (50%), Gaps = 21/381 (5%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW----- 130
P ++A K T +Q + L G D + A+TG+GK+ AF +P + +
Sbjct: 384 PLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNS 443
Query: 131 ----HDQQPYYACILAPTRELAQQIK-ETFDSLGSLMGVRSTCIVGGMSM-MDQARDLMR 184
H P + IL PTRELA QI E L + G+ ++GG +DQ R
Sbjct: 444 GKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESE 503
Query: 185 KPHIIIATPGRLMDHLENTKGFNLR--KLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
I+IATPGRL+DH+EN G R LK ++DEAD LLD+ F +++I++ +P Q
Sbjct: 504 PCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQ- 562
Query: 243 RTTYLFSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI 299
R + LFSAT+ ++ ++ + L + +T D + Q+ +V P +
Sbjct: 563 RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVP 622
Query: 300 YLLNEFIGK----STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKA 355
+LL E I IVF T + L ++ + +H Q RT D FK
Sbjct: 623 HLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKE 682
Query: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
R ILV +DV+ARG++ P V +VI IP D + YIHR+GRT R G+ GK + L++ ++
Sbjct: 683 SNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWE 742
Query: 416 LELILRIEDVLGKKLPKENVD 436
+ ++D+ + +P ++D
Sbjct: 743 RYFLDELKDLPLEPIPAPDLD 763
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 173 bits (439), Expect = 5e-43
Identities = 112/368 (30%), Positives = 199/368 (53%), Gaps = 10/368 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q + IP A+ G D+I A++G GKTA F + L Q+
Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK--PHIIIA 191
A +L TRELA QI F + + + G + +DL++ PHI++
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ L K +L+ +++ ++DE D++L+ ++ + I + P + +FSA
Sbjct: 173 TPGRVLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSA 230
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
T++ +I + + + +P++ V ++ + T+ LVQ + + K L LL+
Sbjct: 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQ 290
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
++F ++ + A ++ L F + +H ++Q +R FK G + ILVATD+ R
Sbjct: 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 350
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV-SQYDLELILRIE---DV 425
G+DI V+IVINYD+P + +Y+HRVGR R G G +I+ V S D E++ +++ +V
Sbjct: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEV 410
Query: 426 LGKKLPKE 433
K+LP++
Sbjct: 411 DIKELPEQ 418
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 173 bits (439), Expect = 5e-43
Identities = 122/461 (26%), Positives = 207/461 (44%), Gaps = 80/461 (17%)
Query: 43 EDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIEACKN-LNYNKPTPIQSKAIPPA 101
+ SA+ ++ L L +L + K + + PT +Q++AIP
Sbjct: 5 QQSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVI 64
Query: 102 LKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY------YACILAPTRELAQQIKETF 155
L G D++ A TG+GKT A+ P+++ L +A ++ PTREL Q+ ET
Sbjct: 65 LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
Query: 156 DSL-GSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYL 214
+ L + ++GG + L + I+IATPGRL+DHL+NT F + L+++
Sbjct: 125 EKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWV 184
Query: 215 VMDEADRLLDMEFGPVLDRILNIIPT----QG-----------RTTYLFSATMTSKIDKL 259
+ DEAD +L++ +G +++I+ ++ + QG + L SAT+ K++ L
Sbjct: 185 IFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDL 244
Query: 260 QRASLTNPVKCAVSN-----------------------------------KYQTVDTLVQ 284
+ SL +PV + N Y LVQ
Sbjct: 245 AKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQ 304
Query: 285 TLMVVPGGLKNTFLIYLLNEFI----GKSTIVFTRTKANAERISNLCN------------ 328
+ VP G + L+ +L + +VF T+ + +L +
Sbjct: 305 RYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEE 364
Query: 329 ------LLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINY 382
L+ LHG + Q R A FK K+++L++TDVAARGLD P V +I Y
Sbjct: 365 EGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQY 424
Query: 383 DIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
D P ++ Y+HRVGRTAR G G+++ + +++ + ++
Sbjct: 425 DCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELK 465
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 172 bits (436), Expect = 1e-42
Identities = 115/364 (31%), Positives = 184/364 (49%), Gaps = 41/364 (11%)
Query: 85 LNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-----HDQQPYYAC 139
L + +PTPIQ +AIP L G + A TGSGKT AF P+L +L A
Sbjct: 159 LGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAV 218
Query: 140 ILAPTRELAQQIKETFDSL--GSLMGVRSTCIVGGMSMMDQARDLMRKP----------- 186
IL+P RELA Q L GS +R LM KP
Sbjct: 219 ILSPARELAAQTAREGKKLIKGSNFHIR----------------LMTKPLVKTADFSKLW 262
Query: 187 -HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT 245
++I+TP RL ++ K +L K++YLV+DE+D+L + +D ++
Sbjct: 263 CDVLISTPMRLKRAIK-AKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIR 321
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
LFSAT+ +++L R+ + + V+ + K +T+ Q L+ G + L+ L F
Sbjct: 322 SLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFA--GSEEGKLLALRQSF 379
Query: 306 ---IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
+ ++F ++K A+ + + A +H DL +R A+D F+AG++ +L+
Sbjct: 380 AESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLI 439
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 422
ATDV ARG+D ++ VINYD P + +YIHR+GR+ RAGRSG++I+ ++ D+ + I
Sbjct: 440 ATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNI 499
Query: 423 EDVL 426
+ +
Sbjct: 500 ANTM 503
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 171 bits (434), Expect = 2e-42
Identities = 121/366 (33%), Positives = 182/366 (49%), Gaps = 28/366 (7%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP--------YYA 138
Y K TPIQ +P +G DI+ AQTGSGKTAAF +PI+ +L + Y
Sbjct: 572 YTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPR 631
Query: 139 CI-LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
CI L PTREL QI + + GG+++ + + II+ T GR+
Sbjct: 632 CIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIK 691
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILN---IIPTQGRTTYLFSATMT 253
E L K ++ V+DEADR++D M FG +D I+N + + R T +FSAT
Sbjct: 692 HFCEEGT-IKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFP 750
Query: 254 SKIDKLQRASLTNPVKCAVSNKYQTVDTLV-------------QTLMVVPGGLKNTFLIY 300
+ + R L +K + V L+ + G +++
Sbjct: 751 DSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTE 810
Query: 301 LLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
+E K TIVF +A A+ ++++ + + A +HG Q +R+ AL F+ G + +
Sbjct: 811 KNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 870
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
L+AT VA RGLDI VD VINYD+P + YIHR+GRT R G +G++ S +S+ D L+
Sbjct: 871 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE-DCNLLS 929
Query: 421 RIEDVL 426
+ VL
Sbjct: 930 ELVRVL 935
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 171 bits (434), Expect = 2e-42
Identities = 120/381 (31%), Positives = 191/381 (49%), Gaps = 21/381 (5%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQ- 134
P ++A K T +Q + L G D + A+TG+GK+ AF +P + +
Sbjct: 337 PLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNS 396
Query: 135 --------PYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSM-MDQARDLMR 184
P +A IL PTRELA QI +L G+ ++GG +DQ R
Sbjct: 397 GKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESE 456
Query: 185 KPHIIIATPGRLMDHLENTKGFNLR--KLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
I+IATPGRL+DH+EN G R LK ++DEAD LLD+ F +++I++ +P Q
Sbjct: 457 PCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQ- 515
Query: 243 RTTYLFSATMTSKIDKLQRASLTNP---VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI 299
R + LFSAT+ ++ ++ + L + +T D + Q+ +V P +
Sbjct: 516 RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVP 575
Query: 300 YLLNEFIGKST----IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKA 355
+LL E I + IVF T + L ++ + +H Q RT D FK
Sbjct: 576 HLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKE 635
Query: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
R ILV +DV+ARG++ P V +VI IP D + YIHR+GRT R G+ G+ + L++ ++
Sbjct: 636 SNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWE 695
Query: 416 LELILRIEDVLGKKLPKENVD 436
+ ++D+ + +P ++D
Sbjct: 696 RYFLDELKDLPLEPIPAPDLD 716
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 170 bits (431), Expect = 4e-42
Identities = 124/435 (28%), Positives = 201/435 (45%), Gaps = 71/435 (16%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALK----------GSDIIGLAQTGSGKTAAF 121
L++ +L+E + N + +Q+ +P L+ G D+ A TGSGKT ++
Sbjct: 131 LNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSY 190
Query: 122 AIPILNQLWHDQQPYYACI-LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQAR 180
IPI+ L H P C+ + PTREL Q+ +TF+ S G++ G S+ +
Sbjct: 191 VIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETY 250
Query: 181 DLMRKPH-----IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRIL 235
L + ++++TPGRL+DH+ N + F+L+ L+Y+V+DEADRLLD F +D ++
Sbjct: 251 QLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
Query: 236 --------------------NIIPT--------------QGRTTYLFSATMTSKIDKLQR 261
NI PT +FSAT+T K+
Sbjct: 311 MEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIAS 370
Query: 262 ASLTNPVKCAVSNKYQTVD---------------TLVQTLMVVPGGLKNTFLIYLLNEFI 306
L NP V NK VD +Q V K L +L++
Sbjct: 371 LKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKN 430
Query: 307 GKSTIVFTRTKANAERISNLCNLL------EFSATALHGDLNQNQRTGALDLFKAGKRSI 360
+ + F ++ A R+ L L+ FS L++++R + F G ++
Sbjct: 431 LTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNL 490
Query: 361 LVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL 420
LV +D+ ARG+D+ + VINYD P+ +SY+HR+GRTARAGR G + +LV ++
Sbjct: 491 LVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFS 550
Query: 421 RIEDVLGKKLPKENV 435
++ L + LP + +
Sbjct: 551 KLVKQLRRTLPIKRI 565
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 170 bits (430), Expect = 5e-42
Identities = 117/344 (34%), Positives = 179/344 (52%), Gaps = 24/344 (6%)
Query: 93 IQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL----WHDQQPYYACILAPTRELA 148
+Q K IP AL+G DIIG +QTG+GKT AF +P L +L W ++ PTRELA
Sbjct: 30 VQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLVITPTRELA 89
Query: 149 QQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNL 208
QI + + + + I+GG+ D+ + + +I++ TPGRL+ HL+ +
Sbjct: 90 LQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKV-NQMNILVCTPGRLLQHLQENPYLST 148
Query: 209 RKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPV 268
++ L++DEAD++++M F VL+ IL IP Q + T LFSAT + ++ + L +P
Sbjct: 149 ANVQILILDEADKMIEMGFKEVLEDILEYIP-QKKQTLLFSATPKASTARILK--LEDPR 205
Query: 269 KCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKST----IVFTRTKANAERIS 324
++ + L Q ++ G K I L+ FIG + IVF T + +
Sbjct: 206 IISIYKEEGFPSQLRQYFYMMRTGDK----INYLHTFIGSNPEVKGIVFFST---CKEVK 258
Query: 325 NLCNLLEFSAT-----ALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIV 379
C L E L G ++Q QR F K IL TD+ +RGLD P VD+V
Sbjct: 259 FHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVV 318
Query: 380 INYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
I YD P + ++Y+HRVGRTAR G+S + + +L+ I+
Sbjct: 319 IQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLLTDIQ 362
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 169 bits (429), Expect = 7e-42
Identities = 126/416 (30%), Positives = 192/416 (45%), Gaps = 19/416 (4%)
Query: 6 KKQAVKNNQVLSLAEKIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXX 65
K Q K + AEK+ K EK+ + E S + K
Sbjct: 34 KSQPEKTADSIKPAEKLVPKVEEKKTK---QEDSNLISSEYEVKVKLADIQADPNSPLYS 90
Query: 66 XXXXXXLDLVPELIEACKNLNYNKPTPIQSKAIPPALKGS--DIIGLAQTGSGKTAAFAI 123
L L PEL++ + + KP+ IQ +A+P L ++I +Q+G+GKTAAF++
Sbjct: 91 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 150
Query: 124 PILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLM 183
+L ++ + A LAP+RELA+Q E +G + S IV ++
Sbjct: 151 TMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSF----EKNKQ 206
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQG 242
+I+ TPG ++D L K L+K+K V+DEAD +LD + G R+ +P
Sbjct: 207 INAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 265
Query: 243 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTFLIYL 301
+ LFSAT + + + + N + VD + Q M K L L
Sbjct: 266 QLV-LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL 324
Query: 302 LNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
S+I+F TK A + + LHGDL +R +D F+ G+ +L
Sbjct: 325 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 384
Query: 362 VATDVAARGLDIPSVDIVINYDIP------VDSKSYIHRVGRTARAGRSGKSISLV 411
+ T+V ARG+DIP+V +V+NYD+P D +YIHR+GRT R GR G +IS V
Sbjct: 385 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 440
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 169 bits (429), Expect = 7e-42
Identities = 114/350 (32%), Positives = 184/350 (52%), Gaps = 16/350 (4%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGS--DIIGLAQTGSGKTAAFAIPILNQL 129
L+L PEL++ ++ + KP+ IQ KA+P L ++IG +Q+G+GKTAAFA+ +L+++
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV 178
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
A LAP+RELA+QI + +G V++ + D I+
Sbjct: 179 DASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQ----IV 234
Query: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRTTYLF 248
I TPG +MD L + + R +K V+DEAD +LD + G RI +++P + LF
Sbjct: 235 IGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV-LF 292
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTFLIYLLNEFIG 307
SAT + +++K N + + + +V+ + Q M K L+ L
Sbjct: 293 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTI 352
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
+I+F + K AE I+ + L G+L QR +D F+ G +LV T+V
Sbjct: 353 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 412
Query: 368 ARGLDIPSVDIVINYDIPVDS------KSYIHRVGRTARAGRSGKSISLV 411
ARG+D+ V++V+NYD+P+D ++Y+HR+GRT R GR G SI+ V
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 462
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 169 bits (428), Expect = 9e-42
Identities = 113/362 (31%), Positives = 189/362 (51%), Gaps = 19/362 (5%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQP-- 135
L++ + + PTPIQ +AIP L G +++ A TGSGKT AF+IPIL QL +QP
Sbjct: 68 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL---KQPAN 124
Query: 136 --YYACILAPTRELAQQIKETFDSLGSLMGVRSTCI-VGGMSMMDQARDLMRKPHIIIAT 192
+ A I++PTRELA QI + G R I ++ +K I++ T
Sbjct: 125 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT 184
Query: 193 PGRLMDHL-ENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII---PTQGRTTYLF 248
P RL+ L ++ G +L +++LV+DE+D+L + D++ +I + +F
Sbjct: 185 PNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMF 244
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK 308
SAT +++ + +L N + ++ + V+T+ Q L+ V T + + E + K
Sbjct: 245 SATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGS---ETGKLLAMRELVKK 301
Query: 309 S----TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
+VF ++ A+ + + + +H + Q QR + F+AGK +L+ T
Sbjct: 302 GFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICT 361
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
+ ARG+D V++VINYD P S YIHR+GRT RAG GK+I+ ++ D L+ + +
Sbjct: 362 ALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVAN 421
Query: 425 VL 426
V+
Sbjct: 422 VI 423
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 168 bits (426), Expect = 1e-41
Identities = 114/350 (32%), Positives = 183/350 (51%), Gaps = 9/350 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW-HD 132
++P L + + N++ PTPIQ +A+P L+ ++ A TGSGKT AF PI+N L H
Sbjct: 126 MLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHK 185
Query: 133 QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQAR--DLMRKPHIII 190
A +LAPTRELAQQI L G+R T + +S Q + ++ I++
Sbjct: 186 TTGLRALVLAPTRELAQQIYRECAELTRETGLR-THFISKVSEAKQKHGAECKQRYDILV 244
Query: 191 ATPGRLMDHLENTKGF-NLRKLKYLVMDEADRLLDM---EFGPVLDRILNIIPTQGRTTY 246
+TP R+ L+ +L +++ V+DEADRL++ F LD I +
Sbjct: 245 STPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVA 304
Query: 247 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG-GLKNTFLIYLLNEF 305
FSAT T + K L N V+ + + +T+ Q L+ V G K + L+ +
Sbjct: 305 FFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQG 364
Query: 306 IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
+ +VF ++K A+++ + +H + +Q+QR + F+ G +L+ T+
Sbjct: 365 LQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTE 424
Query: 366 VAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
+ RG+D V++VINYD P + SYIHR+GRT RAGR G++I+ +Q D
Sbjct: 425 LMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQED 474
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 167 bits (423), Expect = 3e-41
Identities = 101/309 (32%), Positives = 164/309 (52%), Gaps = 3/309 (0%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L +L+ + KP+ IQ +AIP LK D+I AQ+G+GKTA F+I +L L
Sbjct: 31 MGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDT 90
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ A IL+PTRELA QI++ +LG M V+ +GG ++ + R L H++
Sbjct: 91 QVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSG 150
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPGR+ D + + R +K LV+DEAD +L+ F L I +P G L SAT
Sbjct: 151 TPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLP-PGAQVVLLSAT 208
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP-GGLKNTFLIYLLNEFIGKST 310
+ +I ++ +T+P++ V T++ + Q + V K LI L +
Sbjct: 209 LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQA 268
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ + +++ F+ +++HGD+ Q R + F+AG +L++TDV ARG
Sbjct: 269 VLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARG 328
Query: 371 LDIPSVDIV 379
LD+P V +V
Sbjct: 329 LDVPQVSLV 337
Score = 49.7 bits (117), Expect = 1e-05
Identities = 22/45 (48%), Positives = 32/45 (70%)
Query: 379 VINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
VINYD+P + + YIHR+GR+ R GR G +I+ V Q D+ ++ IE
Sbjct: 446 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 490
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 162 bits (411), Expect = 8e-40
Identities = 126/440 (28%), Positives = 208/440 (46%), Gaps = 89/440 (20%)
Query: 72 LDLVPELIEACKNL-NYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
L L P ++ ++L + + T +Q K IP L+G D++ +QTGSGKT A+A+P++ +L
Sbjct: 332 LGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLV-ELL 390
Query: 131 HDQQP-------YYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMSMMDQARDL 182
QQP A ++ PTREL Q E L + ++GG S + L
Sbjct: 391 QKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARL 450
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
+ +I+I TPGRL+DHL +T F L KL++L++DEADRLL++ + + +++ I Q
Sbjct: 451 RKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQR 510
Query: 243 R----------TTYLFSATMTSKIDKLQRASLTNPV---------KCAVSNK--YQ--TV 279
L SAT+TS++ +L +L NP+ A+ +K YQ T+
Sbjct: 511 AECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETI 570
Query: 280 DTLVQ------------------------TLMVVPGGLKNTFLIYLLNEFIGKS-----T 310
+ L++ + +VVP L+ L LL + + S
Sbjct: 571 EALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKA 630
Query: 311 IVFTRT---------------------------KANAERISNLCNLLEFSATALHGDLNQ 343
IVF T K +++ ++ L LHG + Q
Sbjct: 631 IVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQ 690
Query: 344 NQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGR 403
+R G F+ +L+ATDV RG+D+P + +V+ Y P + ++HRVGRTARAGR
Sbjct: 691 TERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGR 750
Query: 404 SGKSISLVSQYDLELILRIE 423
G+++ ++ + + + +E
Sbjct: 751 KGRAVLFLTPSEAQFVRHLE 770
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 162 bits (410), Expect = 1e-39
Identities = 109/325 (33%), Positives = 173/325 (52%), Gaps = 7/325 (2%)
Query: 75 VPELIEA-CKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
+PE++ K Y PTPIQ + IP L G DI+ A TGSGKTAAF +P++ + +
Sbjct: 210 LPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFES 269
Query: 134 QPYYACILAPTRELAQQI-KETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIAT 192
+ A IL PTRELA QI ++ + + L +++ +VGG+ + Q L + +IIAT
Sbjct: 270 KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIAT 329
Query: 193 PGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATM 252
PGRL+D ++ + L +K +V+DEAD +L M F + IL IP + T L SAT+
Sbjct: 330 PGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ-TILVSATI 387
Query: 253 TSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE--FIGKST 310
+ I++L L NPV+ K + Q ++ V K L +LN+
Sbjct: 388 PTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPV 447
Query: 311 IVFTRTKANAERISN-LCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
+VF K A+ +S + + + ++H + +Q +R L G ++V+T V R
Sbjct: 448 LVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGR 507
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHR 394
GLD+ SV +V+N+D+P Y+H+
Sbjct: 508 GLDLISVRLVVNFDMPSSMDEYVHQ 532
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 161 bits (407), Expect = 2e-39
Identities = 117/394 (29%), Positives = 180/394 (44%), Gaps = 40/394 (10%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L P L++A +L +++PT IQ KAIP AL+G D++ A+TGSGKTAA+AIP+L L H
Sbjct: 12 MGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH 71
Query: 132 D-------QQPYYACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMSMMDQARDL 182
+Q +L PT+ELA+Q + L + VR + + Q L
Sbjct: 72 RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVL 131
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
M KP +++ TP R++ HL+ L+ LV+DEAD L F L +L +P +
Sbjct: 132 MEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP-RI 190
Query: 243 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI--- 299
+L SAT + L+ L NPV + +Q VV ++ FL+
Sbjct: 191 YQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYA 250
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
L I +++F T + R+ L+G+L R + F G
Sbjct: 251 LLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYD 310
Query: 360 ILVATDV---------------------------AARGLDIPSVDIVINYDIPVDSKSYI 392
++ATD ARG+D V V+N+D+P ++YI
Sbjct: 311 CVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYI 370
Query: 393 HRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
HR GRTARA G ++ V + + +IE++L
Sbjct: 371 HRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 160 bits (405), Expect = 4e-39
Identities = 136/464 (29%), Positives = 208/464 (44%), Gaps = 83/464 (17%)
Query: 80 EACKNLNYNKPTPIQSKAIP---------PALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
+A K + + P+Q + IP P + DI A TGSGKT AFAIPI+ L
Sbjct: 150 QALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLS 209
Query: 131 HDQQ-PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR----- 184
A ++ P ELA Q+ L S + + + D+ L+
Sbjct: 210 QRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGK 269
Query: 185 ---KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP-- 239
K I++ TPGRL+DHL TKGF L+ LK+LV+DEADR++D F L + + +
Sbjct: 270 YYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKET 329
Query: 240 -------TQGRTTY--------------LFSATMTSKIDKLQRASLTNP----------- 267
TQ Y LFSAT++ +KLQ L P
Sbjct: 330 TDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPV 389
Query: 268 VKCAVSN---------------KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIV 312
+K A +Y T L + V LK + L+ ++ K +
Sbjct: 390 LKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLC 449
Query: 313 FTRTKANAERISNLCNLL----EFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAA 368
FT + A R++ + +L + L G+L+ R L F AGK + L+ +D A
Sbjct: 450 FTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALA 509
Query: 369 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGK 428
RG+D+ VD+V++Y+ P +YIHRVGRTARAGR G +++++++ D+ L +I K
Sbjct: 510 RGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKILSDANK 569
Query: 429 KLPKE-----NVD-------KDAILALRDSVDKANGEVVMELNR 460
L +E +++ K+A+ LR K + + E NR
Sbjct: 570 GLGEEIHVSPDIEIQHAVEYKEALAGLRSEKVKNKNQKMAEKNR 613
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 160 bits (404), Expect = 5e-39
Identities = 123/388 (31%), Positives = 198/388 (50%), Gaps = 37/388 (9%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH-- 131
L +L + K + N+PTPIQ + P + G+D++ A TGSGKT AF IP + +L
Sbjct: 743 LPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEF 802
Query: 132 -------DQQPY-YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL- 182
D++P I+APTREL Q T L G++ GG S + L
Sbjct: 803 EKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLR 862
Query: 183 -MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDM-EFGPVLDRILNIIPT 240
+ +I++AT GRL D + N +L K+KY+V+DEADR++D +FG + +I+
Sbjct: 863 SFSQLNILVATMGRLQDFV-NAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGE 921
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVS----NKYQTVDTLV-QTLMVVPGGLKN 295
+ + T LFSA+ + + LQ L VK + +K+ T + + Q ++ VP K
Sbjct: 922 RTQQTVLFSASFS---EDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKR 978
Query: 296 TFLIYLLN------------EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQ 343
+ LL + T++F + + ++ L + S ++H NQ
Sbjct: 979 DAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQ 1038
Query: 344 NQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDS--KSYIHRVGRTARA 401
QR LD F+ GK +VA++V ARGL+I +D V+NYD+P + Y++R+GRT RA
Sbjct: 1039 EQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRA 1098
Query: 402 GRSGKSISLVS-QYDLELILRIEDVLGK 428
G +G S + V + D ++I + +L +
Sbjct: 1099 GFTGTSTAFVDVENDTDIIPCLVSILNE 1126
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 159 bits (403), Expect = 7e-39
Identities = 111/344 (32%), Positives = 175/344 (50%), Gaps = 22/344 (6%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRE 146
+ TPIQ+ +G +I GLA TG+GKT AF +PIL+++ + ILAP++E
Sbjct: 15 FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQVLILAPSQE 74
Query: 147 LAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR-KPHIIIATPGRLMDHLENTKG 205
LA Q G+L+ V T ++GG + QA L + KPHI++ T GR++ L+
Sbjct: 75 LAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLDGG-A 133
Query: 206 FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKI--------D 257
L L+ ++ DEAD +L E L + +PT + LFSAT +
Sbjct: 134 LKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLG-LFSATSGVDLKYVADTFGQ 192
Query: 258 KLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTK 317
+++ S+ A+++++Q VD + +++ + N G + T
Sbjct: 193 EVRPVSVGTDAPAAITHEFQYVDQKAKASLLIQLARNKQQALVFFNTISGLVNMQATLRH 252
Query: 318 ANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVD 377
A+A +S N D Q QR AL LFK G+ S+L+ TDVAARGLDI +
Sbjct: 253 AHASVMSIGSN-----------DKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLP 301
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 421
+V+N +P K+YIHR GRT R G+ G+ ++L + +D+ + R
Sbjct: 302 LVVNAQLPQRKKTYIHRAGRTGRMGKPGRVLNLGNDHDIRDLKR 345
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 158 bits (399), Expect = 2e-38
Identities = 109/384 (28%), Positives = 197/384 (50%), Gaps = 30/384 (7%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQL 129
L L P+L++ + +N+P+ IQ A+P L ++I +Q+G+GKTAAF + +L+++
Sbjct: 96 LRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRV 155
Query: 130 W-HDQQPYYACILAPTRELAQQIKETFDSLGSLM-------GVRSTCIVGGMSMMDQARD 181
D+ P C L+PT ELA Q + + +G VR + G + +Q
Sbjct: 156 EPSDRYPQCLC-LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQ--- 211
Query: 182 LMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLD-RILNIIPT 240
I+I TPG ++D K + +K+K V+DEAD ++ + RI ++P
Sbjct: 212 ------IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 265
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG-GLKNTFLI 299
+ LFSAT + K + + +P + + +T+DT+ Q ++ K L
Sbjct: 266 NCQML-LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 324
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
L ++F T+ A ++ + L G++ QR ++ F+ GK
Sbjct: 325 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 384
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPV------DSKSYIHRVGRTARAGRSGKSISLV-S 412
+LV T+V ARG+D+ V +VIN+D+PV D+++Y+HR+GRT R G+ G ++++V S
Sbjct: 385 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 444
Query: 413 QYDLELILRIEDVLGKKLPKENVD 436
++ + ++ RI++ KK+ + + D
Sbjct: 445 KHSMNILNRIQEHFNKKIERLDTD 468
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 158 bits (399), Expect = 2e-38
Identities = 109/384 (28%), Positives = 196/384 (50%), Gaps = 30/384 (7%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQL 129
L L P+L++ + +N+P+ IQ A+P L ++I +Q+G+GKTAAF + +L+Q+
Sbjct: 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156
Query: 130 WHDQQPYYACI-LAPTRELAQQIKETFDSLGSLM-------GVRSTCIVGGMSMMDQARD 181
Y C+ L+PT ELA Q + + +G VR + G + +Q
Sbjct: 157 -EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQ--- 212
Query: 182 LMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLD-RILNIIPT 240
I+I TPG ++D K + +K+K V+DEAD ++ + RI ++P
Sbjct: 213 ------IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG-GLKNTFLI 299
+ LFSAT + K + + +P + + +T+DT+ Q ++ K L
Sbjct: 267 NCQML-LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
L ++F T+ A ++ + L G++ QR ++ F+ GK
Sbjct: 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 385
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPV------DSKSYIHRVGRTARAGRSGKSISLV-S 412
+LV T+V ARG+D+ V +VIN+D+PV D+++Y+HR+GRT R G+ G ++++V S
Sbjct: 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445
Query: 413 QYDLELILRIEDVLGKKLPKENVD 436
++ + ++ RI++ KK+ + + D
Sbjct: 446 KHSMNILNRIQEHFNKKIERLDTD 469
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 157 bits (396), Expect = 4e-38
Identities = 113/328 (34%), Positives = 168/328 (50%), Gaps = 45/328 (13%)
Query: 79 IEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYA 138
++A K +++ T IQ K I L+G D++ A+TGS + + + + +P
Sbjct: 381 LKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGSVE-----LTVKLKFMPTNRPG-V 434
Query: 139 CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
IL+PTRELA QI F + I+GG + +A+ L +II+ATPG L+D
Sbjct: 435 FILSPTRELAMQI---FGGANTHHMHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLD 491
Query: 199 HLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDK 258
+++NT GF + L+YLV+DEADR+LD+ F L +I+ ++PT R T L SAT T K++
Sbjct: 492 YMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPT-CRHTMLLSATQTRKVED 550
Query: 259 LQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKA 318
L R SL K A+ N+ + + +VF +
Sbjct: 551 LARISLK---KGAIKNRKRKI-------------------------------MVFFSSSM 576
Query: 319 NAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDI 378
+ + L N ++ A+HG QN+ T F IL+ DVAARGLDIP VD
Sbjct: 577 SVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKADSGILLCMDVAARGLDIPEVDW 636
Query: 379 VINYDIPVDSKSYIHRVGRTARAGRSGK 406
++ +D D K YIHRV RTAR G +G+
Sbjct: 637 IVQHDPLDDPKEYIHRVSRTAR-GLNGR 663
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 157 bits (396), Expect = 4e-38
Identities = 106/354 (29%), Positives = 182/354 (50%), Gaps = 37/354 (10%)
Query: 133 QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIAT 192
Q P Y +L PTRELA Q+K + G+R I GG+++ Q R L + P I++AT
Sbjct: 338 QTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVAT 397
Query: 193 PGRLMDHLE--NTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG-----RTT 245
PGRL + N + + +LV+DE DR+++ L +L ++ + R
Sbjct: 398 PGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQN 457
Query: 246 YLFSATMT--------------------------SKIDKL-QRASLTNPVKCAVSNKYQT 278
+++SAT+T KI+ L + ++ P +++ QT
Sbjct: 458 FVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQT 517
Query: 279 VDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALH 338
TL ++ ++ P K+ L Y + G+ TIVF + +R++ L LL+ + LH
Sbjct: 518 AQTLTESRLLCPIDHKDYHLYYFIQRHPGR-TIVFCNSIDCVKRLATLFGLLDCNPLPLH 576
Query: 339 GDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRT 398
++ Q QR L+ F+ +L+ATDVAARGLDIP+V+ VI+Y +P S++Y+HR GRT
Sbjct: 577 ANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRT 636
Query: 399 ARAGRSGKSISLVSQYDLELILRIEDVLGK--KLPKENVDKDAILALRDSVDKA 450
ARA + G ++ + +++ +++ L + LP + + + A+R+ V+ A
Sbjct: 637 ARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRERVNLA 690
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 155 bits (393), Expect = 1e-37
Identities = 126/406 (31%), Positives = 198/406 (48%), Gaps = 74/406 (18%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD----Q 133
++++ +NLN+ +PT IQ K+IP ++G D++G A TGSGKT A+ IPI+ +L +
Sbjct: 182 ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKN 241
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRST----CIVGGMSMMDQARDLM--RKPH 187
+ + I PTRELA Q+ + + + +S + GG+S+ Q R L
Sbjct: 242 KKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQ 301
Query: 188 IIIATPGRLMDHLE--NTKGFNLRKLKYLVMDEADRLLDM----EFGPVLDRIL-----N 236
I+IATPGR ++ LE NT K+ L++DEADRLL EF ++ +L N
Sbjct: 302 IVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKN 361
Query: 237 IIPTQGRT----TYLFSATMTSKIDKLQRASLTNPVK---------------------CA 271
++G + T +FSAT + ID + S + VK
Sbjct: 362 RENSEGSSKIWQTLIFSATFS--IDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIH 419
Query: 272 VSNKYQTVDT---------LVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAER 322
++K +DT + ++L+ P ++ + Y L F G +T++F + ++
Sbjct: 420 FNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPG-TTLIFCNAIDSVKK 478
Query: 323 ISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKR----------------SILVATDV 366
++ N L A +H + Q R +L+ FK ++L+A+DV
Sbjct: 479 LTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDV 538
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
AARGLDIP V VI+Y +P + YIHR GRTARAG G S + S
Sbjct: 539 AARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICS 584
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 155 bits (393), Expect = 1e-37
Identities = 123/419 (29%), Positives = 197/419 (46%), Gaps = 30/419 (7%)
Query: 87 YNKPTPIQSKAIPPALKGSD-IIGLAQTGSGKTAAFAIPILNQLWH-----DQQPYYACI 140
+ K TP+Q + + + + A+TG+GKT AF + + + ++ I
Sbjct: 58 FEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVI 117
Query: 141 LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR-KPHIIIATPGRLMDH 199
L+PTRELA QI E L G+R + +GG S M + + R +++IATPGRL DH
Sbjct: 118 LSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDH 177
Query: 200 LENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL 259
L+N + ++DEADRL+DM F + I + T FSATM K+ +
Sbjct: 178 LQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNV 237
Query: 260 QRASLTNPVK---CAVSNKYQTVDTLVQTLMVVPGGLKNTFL--IYLLNEFIGKST---- 310
R L K C N+ T + + Q V+ L F + LL + +
Sbjct: 238 FRGILGTDFKLINCLDPNEPPTHERVPQ--FVIETKLDKVFSSSLSLLQQLTSSNPSSRI 295
Query: 311 IVFTRTKANAERISNLC-NLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
IVF T + + + + N L+ LH L QR + F+ + IL ATDV AR
Sbjct: 296 IVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVAR 355
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKK 429
G+D P++ V+ P ++ YIHR+GRT RAG++G++ ++ + + + I+ + K+
Sbjct: 356 GMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKR 415
Query: 430 LPKENVDKDAILALRDSVDKANGEVVMELNRRNKEKQARG------KGRRGRMATRDNM 482
E + A+ LR ++K++ + +R N K G G R AT N+
Sbjct: 416 ATIEPLSDQALSTLRSDIEKSS-----KFSRTNALKTLYGSKPHVFSGSSQRRATGKNI 469
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 155 bits (393), Expect = 1e-37
Identities = 109/366 (29%), Positives = 185/366 (49%), Gaps = 18/366 (4%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L +L++ ++ + P+ IQ AI P + G DI AQ+G+GKT AFA+ L Q
Sbjct: 45 LKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQ 104
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATP 193
+LA TRE+A Q F+ LG MG R + GG + L +KPHI++ TP
Sbjct: 105 DVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTP 164
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY-LFSATM 252
GR ++H+ N ++ +K V+DEAD +L F + I I + +FSAT
Sbjct: 165 GR-VEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMFSATY 223
Query: 253 TSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV------PGGLKNTFLIYLLNEF- 305
+ ++ L NPV + QT+ + Q + + G ++ L L+ +
Sbjct: 224 DEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYD 283
Query: 306 ------IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
+G+S IVF +K +A + + E+ + +L Q +R L+ F+ G
Sbjct: 284 IFRKQRLGQS-IVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNRFRGGTGR 342
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPVDSK--SYIHRVGRTARAGRSGKSISLVSQYDLE 417
L+++ + +RG+DI ++ +V D+P + +YIHR+GR+ R GR G +I++V +++L+
Sbjct: 343 CLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVYEHELK 402
Query: 418 LILRIE 423
+ IE
Sbjct: 403 NLKAIE 408
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 153 bits (387), Expect = 5e-37
Identities = 106/361 (29%), Positives = 182/361 (50%), Gaps = 17/361 (4%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ L EL++A N + KP+ IQ AIP L+G +++ +++G+GKT A+ +L
Sbjct: 56 MGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGNTKI 115
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
++ ++ PTREL+ Q+ E L +G++ ++ ++ D + + +++
Sbjct: 116 GERTQ-VMVVTPTRELSTQVTEVISGLAGPLGIKVFS-----ALKNKITDSIGE-EVVVG 168
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEF-GPVLDRILNIIPTQGRTTYLFSA 250
+PG ++ +E K N + +K +V+DEAD LLD + G RIL +I G FSA
Sbjct: 169 SPGTILKLMELGK-LNYKGVKMIVLDEADILLDKDMMGTQTFRILKLI--SGAQMIFFSA 225
Query: 251 TMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKST 310
T + ++ + + VK + D + + G K L L
Sbjct: 226 TFSEQVKQTIEFYAPDAVKM-YEERNGKPDEIKLFYIEAEGENKRRALKSLYEYLSISQM 284
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
I+F TKA + S + LHGDL +R A+ F++ K IL+ TDV +RG
Sbjct: 285 IIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVFSRG 344
Query: 371 LDIPSVDIVINYDIPV-----DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDV 425
+DIP V++++NYD+P+ +++YIHR+GR+ R GR+G + V +LE L +
Sbjct: 345 MDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFVRDEELEAYLSFQKE 404
Query: 426 L 426
L
Sbjct: 405 L 405
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 153 bits (386), Expect = 6e-37
Identities = 117/401 (29%), Positives = 198/401 (49%), Gaps = 36/401 (8%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQL 129
L L PE+++A +N+ PT IQ A+P L S++I AQ+G+GKTAAF + +L ++
Sbjct: 214 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 273
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRST--CIVGGMSMMDQARDLMRKPH 187
+ LAPT ELA+QI E + +G + I GG + R L +
Sbjct: 274 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQ-- 331
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRT-- 244
I+I TPG D+L+ K + K++ LV+DEAD ++ + F + I N++ +
Sbjct: 332 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQ 391
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
+ LFSAT + + N + + + Q + + Q V +++ ++N
Sbjct: 392 SMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQ--FYVQCACRDSKYAAIVNL 449
Query: 305 FIG---KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
+ G S+++F TKA+ + LHGD+ +R + FK G +L
Sbjct: 450 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 509
Query: 362 VATDVAARGLDIPSVDIVINYDIPV-----------------DSKSYIHRVGRTARAGRS 404
+ T+V ARG+D+ V +VINYD+P+ D ++Y+HR+GRT R G++
Sbjct: 510 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 569
Query: 405 GKSISLVSQYD-LELILRIEDVLGKKL----PKENVDKDAI 440
G +I+L+ D + +I +E+ K+ P V+ +AI
Sbjct: 570 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVELEAI 610
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 153 bits (386), Expect = 6e-37
Identities = 117/401 (29%), Positives = 198/401 (49%), Gaps = 36/401 (8%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQL 129
L L PE+++A +N+ PT IQ A+P L S++I AQ+G+GKTAAF + +L ++
Sbjct: 239 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 298
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRST--CIVGGMSMMDQARDLMRKPH 187
+ LAPT ELA+QI E + +G + I GG + R L +
Sbjct: 299 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQ-- 356
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRT-- 244
I+I TPG D+L+ K + K++ LV+DEAD ++ + F + I N++ +
Sbjct: 357 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQ 416
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
+ LFSAT + + N + + + Q + + Q V +++ ++N
Sbjct: 417 SMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQ--FYVQCACRDSKYAAIVNL 474
Query: 305 FIG---KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
+ G S+++F TKA+ + LHGD+ +R + FK G +L
Sbjct: 475 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 534
Query: 362 VATDVAARGLDIPSVDIVINYDIPV-----------------DSKSYIHRVGRTARAGRS 404
+ T+V ARG+D+ V +VINYD+P+ D ++Y+HR+GRT R G++
Sbjct: 535 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 594
Query: 405 GKSISLVSQYD-LELILRIEDVLGKKL----PKENVDKDAI 440
G +I+L+ D + +I +E+ K+ P V+ +AI
Sbjct: 595 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVELEAI 635
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 153 bits (386), Expect = 6e-37
Identities = 117/401 (29%), Positives = 198/401 (49%), Gaps = 36/401 (8%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQL 129
L L PE+++A +N+ PT IQ A+P L S++I AQ+G+GKTAAF + +L ++
Sbjct: 623 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 682
Query: 130 WHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRST--CIVGGMSMMDQARDLMRKPH 187
+ LAPT ELA+QI E + +G + I GG + R L +
Sbjct: 683 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQ-- 740
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRT-- 244
I+I TPG D+L+ K + K++ LV+DEAD ++ + F + I N++ +
Sbjct: 741 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQ 800
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
+ LFSAT + + N + + + Q + + Q V +++ ++N
Sbjct: 801 SMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQ--FYVQCACRDSKYAAIVNL 858
Query: 305 FIG---KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
+ G S+++F TKA+ + LHGD+ +R + FK G +L
Sbjct: 859 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 918
Query: 362 VATDVAARGLDIPSVDIVINYDIPV-----------------DSKSYIHRVGRTARAGRS 404
+ T+V ARG+D+ V +VINYD+P+ D ++Y+HR+GRT R G++
Sbjct: 919 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 978
Query: 405 GKSISLVSQYD-LELILRIEDVLGKKL----PKENVDKDAI 440
G +I+L+ D + +I +E+ K+ P V+ +AI
Sbjct: 979 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVELEAI 1019
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 152 bits (383), Expect = 1e-36
Identities = 138/473 (29%), Positives = 200/473 (42%), Gaps = 62/473 (13%)
Query: 21 KIKRKALEKQQQAHANEPSPSDEDSAQSNSKDXXXXXXXXXXXXXXXXXXXLDLVPELIE 80
K K K +E +E ++E Q N ++ L L LI
Sbjct: 3 KTKLKPVEDVNSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEE---LGLDSRLIR 59
Query: 81 ACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW------HDQQ 134
A KPT IQ AIP L+G D++ A+TGSGKT A+ +P+L +L+ +
Sbjct: 60 ALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKL 119
Query: 135 PYYACILAPTRELAQQIKETFDSLGSLMGV--RSTCIVGGMSMMDQARDLMRKPHIIIAT 192
A IL P+REL QQ+ SL L V ++ + MS D L P I+++T
Sbjct: 120 APSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVST 179
Query: 193 PGRL-----MDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
P + LE T L LV+DEAD LL + L + +IIP + + L
Sbjct: 180 PACIPKCFAAGVLEPTA--VSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQ-CLL 236
Query: 248 FSATMTSKIDKLQRASLTNPVKCAV---SNKYQTVDTLVQTLMVVPGGLKNT--FLIYLL 302
SAT +S ++KL++ L NP+ + ++K + V + VQ + L L
Sbjct: 237 MSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLK 296
Query: 303 NEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
E + K ++F T R+ + L+G+L QN R L+ F AG L+
Sbjct: 297 LEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLI 356
Query: 363 ATD-----------------------------------VAARGLDIPSVDIVINYDIPVD 387
ATD RG+D V VIN+D+P
Sbjct: 357 ATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQS 416
Query: 388 SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKENVDKDAI 440
YIHR+GRT RA SG S+SL+S ++E ED+ +N D D I
Sbjct: 417 VTGYIHRIGRTGRAYSSGSSVSLISPDEME---GFEDIKSFLASDKNKDIDII 466
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 151 bits (382), Expect = 2e-36
Identities = 104/351 (29%), Positives = 176/351 (49%), Gaps = 13/351 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L L L+ K N+ PT IQ+ AIP AL D+I +++G+GKT + I ++
Sbjct: 30 LRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNP 89
Query: 132 DQQPYYACILAPTRELAQQIKETFDSL-GSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
+ +A I+ PTRELA Q+++TF L S + + +GG + R M + +II
Sbjct: 90 NINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKD-RKRMNESRVII 148
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRTTYLFS 249
TPGRL+ HL + F++ KL+ LV+DEAD+L + + +++ +P + R S
Sbjct: 149 GTPGRLL-HLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMP-KNRQIIACS 206
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGG--------LKNTFLIYL 301
AT +D+ + P+ + S + + + Q + +P LK L +
Sbjct: 207 ATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQI 266
Query: 302 LNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
N+ + I+F ++ A+ N + G + Q++R + ++ IL
Sbjct: 267 FNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRIL 326
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
VATD+ ARG+D P ++VIN D P D +Y+HR+GR R G G +I+ ++
Sbjct: 327 VATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIA 377
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 150 bits (380), Expect = 3e-36
Identities = 114/415 (27%), Positives = 192/415 (45%), Gaps = 61/415 (14%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW- 130
L L L+++ + ++ PT +QS A+P +KG D + + TGSGKT A+ +PIL+++
Sbjct: 115 LGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGP 174
Query: 131 --------HDQQP----YYACILAPTRELAQQI-KETFDSLGSLMGVRSTCIVGGMSMMD 177
H + A I+AP+REL QI +E LG + +VGG + M
Sbjct: 175 LAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMR 234
Query: 178 QARDLMR-KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILN 236
Q L + KP I++ TPGR+ + + K + ++LV+DE D LL F + RIL
Sbjct: 235 QEEALKKNKPAIVVGTPGRIAEISKGGK-LHTHGCRFLVLDEVDELLSFNFREDIHRILE 293
Query: 237 IIPTQG-------------RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDT-- 281
+ + R T L SAT+ + + ++ PV +NK +DT
Sbjct: 294 HVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPV-LVQANKVTPLDTVQ 352
Query: 282 ------------------LVQTLMVVPGGLKNTFLIY-----------LLNEFIGKSTIV 312
+ T+ +P LK+ + I ++ +S I
Sbjct: 353 PSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIA 412
Query: 313 FTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLD 372
F + + ++ +HGDL + R+ L FK G+ +LV +++ARGLD
Sbjct: 413 FMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLD 472
Query: 373 IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLG 427
+ D+V+N ++P D+ Y HR GRT R GR G +++ + + ++ ++E LG
Sbjct: 473 VAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLG 527
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 150 bits (379), Expect = 4e-36
Identities = 138/473 (29%), Positives = 212/473 (44%), Gaps = 103/473 (21%)
Query: 73 DLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILN----- 127
+L P L A + KPT +QS+ IP AL+G D++ A+TGSGKTAA+ IPIL
Sbjct: 20 NLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQ 79
Query: 128 -QLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMSMMDQARDLMR 184
Q+ +Q+ +A +L PTRELAQQ+ + L + +R + S Q L+
Sbjct: 80 KQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLD 139
Query: 185 KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT 244
P I+IATP R + H+ + L KLK+LV+DEAD +L + + + +P +G
Sbjct: 140 LPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLP-RGTQ 197
Query: 245 TYLFSATMTSKIDKLQRASLTNP------------------VKCAVSNKYQTVDTLVQTL 286
++L SAT++ I LQ+ NP VKC+ +K+ L++
Sbjct: 198 SFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLR 257
Query: 287 MVVPGGLKNTFLIYL------------LNEFIGKSTIVFTRTKANAE------------- 321
++ K LI++ L +F KS ++ + N+
Sbjct: 258 LI-----KGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQ 312
Query: 322 ------------RISNLCNLLEFSATAL---------------HGDLNQNQ-RTGALDLF 353
I L N ++F + + D+N A D
Sbjct: 313 IIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKS 372
Query: 354 KAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV-- 411
K KR ARGLD +V V+N+D+P ++KSYIHR+GRTARAG+ G ++S V
Sbjct: 373 KKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
Query: 412 -------SQYDLELILRIEDVLGKKLPKENV-------DKDAILALRDSVDKA 450
LE + E VL ++L K+ + DK+ I A R ++ A
Sbjct: 433 KSEVGKHKPTSLESCKKDESVL-RRLEKKQISLQPYSFDKNQIDAFRYRMEDA 484
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 149 bits (377), Expect = 7e-36
Identities = 118/408 (28%), Positives = 193/408 (46%), Gaps = 26/408 (6%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+E +Y T +Q + L SD++ + TGSGKT AF +P++ + + +
Sbjct: 17 LGPELLEVFDK-SYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAK 75
Query: 134 -QP--YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP-HII 189
QP A IL+P+REL QI + + + GG + + K +I+
Sbjct: 76 LQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNIL 135
Query: 190 IATPGRLMDHLENTKGFNLRK---LKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY 246
+ATPGRL +++ K RK L+ LV+DEADR +++F + IL+ IP Q RT
Sbjct: 136 VATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTG- 194
Query: 247 LFSATMTSKIDKLQRASLTNP--VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
LFSAT + D L L N VK A TL + K + + + +
Sbjct: 195 LFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQ 254
Query: 305 FIGKSTIVFTRTKANAE---RISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
K ++F + + +I C L + A+HG + R + F ++
Sbjct: 255 RTDKKILIFFPSCNSVRYFYKIFERC-LGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVM 313
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI-- 419
++TDV ARG+DI +D VI +D+P S ++HR GRTAR GR G ++ L++ L +
Sbjct: 314 ISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNF 373
Query: 420 ------LRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRR 461
++++++ K+P N K L + + + ++E R
Sbjct: 374 LDNHEKVKLDEI---KVPTNNSRKSEELRQKMIKIQVSDRAILEAGTR 418
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 149 bits (376), Expect = 9e-36
Identities = 120/387 (31%), Positives = 188/387 (48%), Gaps = 36/387 (9%)
Query: 72 LDLVPELIEACKNL--NYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL 129
L L P ++ A + +PT +QS IP L+G ++ A+TGSGKT ++ +P+L +L
Sbjct: 131 LGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRL 190
Query: 130 WH----DQQPYYA---CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL 182
D P A +L P+RELAQQ++ LG +G+ + GG M L
Sbjct: 191 LGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQL 250
Query: 183 MRKPH--IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII-- 238
R+P +++ATPG L L++ + +L +L +LV+DEAD LLD F ++D IL
Sbjct: 251 SRQPSADVLVATPGALWKALKS-RLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHI 309
Query: 239 ---PTQGRTTY-------LFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLV-QTL 286
P + L AT + +L + + + V S+K + V QT
Sbjct: 310 AEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTF 369
Query: 287 MVVPGGLKNTFLIYLLN-----EFIGKS--TIVFTRTKANAERISNLCNLLEFSATALHG 339
+ + G K L+++L E G S +VF + + + + + + L G
Sbjct: 370 LRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQG 429
Query: 340 DLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTA 399
+ R G F+ R IL+ TD+A+RGLD V++V+NYD P + YIHR GR
Sbjct: 430 QMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVG 489
Query: 400 RAGRS--GKSISLVSQ-YDLELILRIE 423
R G G IS V+ +D+ L+ +IE
Sbjct: 490 RVGSEVPGTVISFVTHPWDVSLVQKIE 516
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 147 bits (372), Expect = 3e-35
Identities = 124/405 (30%), Positives = 183/405 (44%), Gaps = 79/405 (19%)
Query: 83 KNLNYNKPTPIQSKAIPPALKGS---DIIGLAQTGSGKTAAFAIPILNQLWHDQQPY--- 136
+ + KPT IQ +AIP + + D AQTGSGKT ++ +PI++ + +
Sbjct: 160 QKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRT 219
Query: 137 ---YACILAPTRELAQQIKETFDSLGSLMGVRSTCI-VGGMSMMDQARDLMRKPHIIIAT 192
+A ++APTRELA QI +L S C+ +GG + L + + II T
Sbjct: 220 SGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGT 279
Query: 193 PGRLMDHLENTKGFN---LRKLKYLVMDEADRLLDMEFGPVLDRILNI---IPTQGR--- 243
PGR++DHL+NTK + L+Y+V+DE D+L+++ F + I+ I IP
Sbjct: 280 PGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFP 339
Query: 244 ------TTYLFSATMTSKIDKLQRASL------TNPVKCAVSNKYQTVDTLVQTLMVVPG 291
L SAT+T +++L+ +L +N K D L+Q + +VP
Sbjct: 340 KLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPP 399
Query: 292 GLKNTFLIYLLN----EFIGKS-------TIVFTRTKANAE------------------- 321
L+ L LN +FI TIVF + E
Sbjct: 400 KLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGD 459
Query: 322 --RISNLCNLL----------EFSATALHGDLNQNQRTGALDLF------KAGKRSILVA 363
R+ N + + LHG L+Q RT L F GK I+
Sbjct: 460 SVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFC 519
Query: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
TDVA+RGLD+P V VI D P + ++HRVGRTARAG G+S+
Sbjct: 520 TDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESL 564
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 147 bits (370), Expect = 5e-35
Identities = 117/402 (29%), Positives = 197/402 (48%), Gaps = 33/402 (8%)
Query: 72 LDLVPELIEACK-NLNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQ 128
L+L PEL++ + + KP+ IQ+ ++P + +I A GSGKT F + +L++
Sbjct: 96 LNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSR 155
Query: 129 LWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQA--RDLMRKP 186
+ + A + PTRELA Q E +G G+ + V + A R
Sbjct: 156 VDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSA 215
Query: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT- 245
H++I TPG L + K L LK LV DEAD +L + D L I+ GR
Sbjct: 216 HVVIGTPGTLKKWMA-FKRLGLNHLKILVFDEADHMLATD--GFRDDSLKIMKDIGRVNP 272
Query: 246 ----YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYL 301
LFSAT + ++ +P + V + +D++ Q +V P K I +
Sbjct: 273 NFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCP---KEQNKIEV 329
Query: 302 LNEFIGK-----STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAG 356
+ + I + TI+F +TKA+A+++ + + T++HG+L ++ R + FK
Sbjct: 330 IKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKEC 389
Query: 357 KRSILVATDVAARGLDIPSVDIVINYDIPV-------DSKSYIHRVGRTARAGRSGKSIS 409
+L+ATDV ARG D V++V+NY++P D + Y+HRVGR R GR G +
Sbjct: 390 LTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFN 449
Query: 410 LV--SQYDLELILRIE---DVLGKKLPKENVDKDAILALRDS 446
L+ +D E++ +IE + K++ N +++ AL+++
Sbjct: 450 LLLDDGWDKEVMEKIEKYFEANVKEIKSWNSEEEYKSALKEA 491
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 146 bits (369), Expect = 6e-35
Identities = 119/401 (29%), Positives = 186/401 (45%), Gaps = 68/401 (16%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGS-DIIGLAQTGSGKTAAFAIPILNQLWH----- 131
L++A KN+ + PT IQS AIP AL+ DII A TGSGKT A+ IP++ +
Sbjct: 28 LLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTI 87
Query: 132 ---DQQPYYACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMSMMDQARDLMRKP 186
++ IL PTRELAQQ+ + L +R+ I MS + LM +P
Sbjct: 88 DNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQP 147
Query: 187 HIIIATPGRLMDHLE-NTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP-TQGRT 244
II+ TPG+L+D L+ +L +LK+LV+DE D +L + L++I +P +
Sbjct: 148 EIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNLQ 207
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNK--YQTVDTLVQTLMVVPGGLK--NTFLIY 300
T+L SAT+ I L++ +P +++ + + L+Q + V K ++I+
Sbjct: 208 TFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVIF 267
Query: 301 LLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSI 360
LN GK T++F R+ + + L+ +L N R +D F +
Sbjct: 268 KLNLIKGK-TLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQL 326
Query: 361 LVATD--------------------------------------------------VAARG 370
L+ATD +RG
Sbjct: 327 LIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRG 386
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLV 411
+D +V V+N+D+P +KSY+HRVGRTAR G++G +IS V
Sbjct: 387 VDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFV 427
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 146 bits (369), Expect = 6e-35
Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 40/394 (10%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
L+L +++A L + +PT IQS AIP L+G D++ A+TGSGKTA +A+P++ ++ +
Sbjct: 14 LELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILN 73
Query: 132 -----DQQPYYACILAPTRELAQQIKETFDSLGSLMG--VRSTCIVGGMS-MMDQARDLM 183
+Q A +LAPT++L +Q ++ + L G VR I + + Q L
Sbjct: 74 SKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALS 133
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR 243
P I++ATP L+ + E +L+ ++ LV+DEAD + + R++ +P +
Sbjct: 134 ESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQ 193
Query: 244 TTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGGLKNTFLIYLL 302
L SAT+T + +++ L NPV + + D L ++ K L LL
Sbjct: 194 AV-LVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYALL 252
Query: 303 N-EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
I +I+F + ++ A L+ +L N R + F G I+
Sbjct: 253 KLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDII 312
Query: 362 VATD-------------------------VAARGLDIPSVDIVINYDIPVDSKSYIHRVG 396
+A+D A+RG+D V+ VIN+D P D SYIHR G
Sbjct: 313 IASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAG 372
Query: 397 RTARAGRSGKSISLVSQYDLELILRIEDVLGKKL 430
RTAR G +S VS + ++ D + KKL
Sbjct: 373 RTARGNNKGSVLSFVSMKE----SKVNDSVEKKL 402
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 145 bits (366), Expect = 1e-34
Identities = 101/357 (28%), Positives = 186/357 (51%), Gaps = 16/357 (4%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
++E + + +P+P+Q KAIP G D+I A++G+GKT F+ L+ L +
Sbjct: 73 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ 132
Query: 138 ACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRL 196
ILAPTRE+A QI ++G M G+ +GG + + Q + ++K HI + +PGR+
Sbjct: 133 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGG-TPLSQDKTRLKKCHIAVGSPGRI 191
Query: 197 MDHLENTKGFNLRKLKYLVMDEADRLLDM-EFGPVLDRILNIIPTQGR-----TTYL-FS 249
+E N ++ ++DEAD+LL+ F ++ I + +P + TY F
Sbjct: 192 KQLIE-LDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 250
Query: 250 ATMTSKIDK---LQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
A +K + R + ++P + Y+ V++ V K L L +
Sbjct: 251 ANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEE--KTQHLQELFSRIP 308
Query: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366
+VF+ + A+ ++++ + F A + G++NQNQR A+ K +L++TD+
Sbjct: 309 FNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDL 368
Query: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE-LILRI 422
+RG+D V++V+N D+P+D ++Y+HR+GR R G G +++ + + E +++RI
Sbjct: 369 TSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRI 425
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 144 bits (363), Expect = 3e-34
Identities = 123/397 (30%), Positives = 190/397 (46%), Gaps = 42/397 (10%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL------- 126
L P ++E K + YN IQ IP L G D++G A+T +GKTAAF +PI+
Sbjct: 388 LHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMD 447
Query: 127 ----NQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL 182
N+ D P A ILAPTRELA QI E + + G ++
Sbjct: 448 EETRNKARQDDGP-LALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEI 506
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLL-DMEFGPVLDRILNIIPTQ 241
I+I T GR+MD + +L L++LV DEADRLL DM+ P L + II
Sbjct: 507 RNGCDILIGTCGRIMDFTVKSH-ISLLHLRFLVFDEADRLLQDMKKDP-LGHLGAIIKDA 564
Query: 242 G-------RTTYLFSATMTSKIDKLQRASL------TNPVKCAVSNKYQTVDTLVQTLMV 288
G R T + SAT + + + + +K ++N + ++
Sbjct: 565 GFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNLEFFEC 624
Query: 289 VPGGLKNTFLIYLLNEFI-GKS--TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQ 345
KN L +L + + GK+ TI+F + K + + A LHGD +Q+
Sbjct: 625 KGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDM 684
Query: 346 RTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIP-----VDSKSYIHRVGRTAR 400
R ++ FK+ + ++LV TD+ +RG+D+ +D VIN+D+P + ++IHR GRT R
Sbjct: 685 REKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGR 744
Query: 401 AGR--SGKSISLVS-QYDLELILR---IEDVLGKKLP 431
GR +G +S V Q D + +L +E ++ + LP
Sbjct: 745 TGRKENGLCVSFVDPQSDRDSLLAPKLVELIISQNLP 781
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 144 bits (362), Expect = 4e-34
Identities = 120/385 (31%), Positives = 187/385 (48%), Gaps = 57/385 (14%)
Query: 82 CKNLNYNKPTPIQS---KAIPPALKGS-------------DIIGLAQTGSGKTAAFAIPI 125
CKN + N PIQS +I P L + DI+ A TGSGKT A++IPI
Sbjct: 190 CKNFSTNT-FPIQSIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPI 248
Query: 126 LNQLWHDQQPYYACIL-APTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMR 184
+ L+ Q CI+ PT+ L Q+ T L + + S+ D+ + L
Sbjct: 249 VQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKLSN 308
Query: 185 -KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGR 243
+P I+I TPGRL+DHL N K NL+ LK+L++DEADRLL+ F ++++ + T
Sbjct: 309 LEPDILITTPGRLVDHL-NMKSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKL 367
Query: 244 TTY-------LFSATMTSKIDKLQRASLTNPVKCA--VSNKYQTVDTLVQTLMVVPGG-- 292
T +FSAT+T+ +KL +L P YQ + L + + +P
Sbjct: 368 DTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKS 427
Query: 293 -LKNTFLIYLLNEFIGKSTI-----VFTRTKANAERISNLCNL----------------L 330
K L+Y + +F+ S I +F ++ ++ R+S L L L
Sbjct: 428 VYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNL 487
Query: 331 EFSATALHGDLNQNQRTGALDLFKAGKRS----ILVATDVAARGLDIPSVDIVINYDIPV 386
S +++ + ++ + + F S IL+ TD+ +RG+DI + VINYD P+
Sbjct: 488 AVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPM 547
Query: 387 DSKSYIHRVGRTARAGRSGKSISLV 411
S+ Y+HRVGRTARA G + +L+
Sbjct: 548 SSQQYVHRVGRTARANELGSAYNLL 572
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 143 bits (360), Expect = 7e-34
Identities = 101/364 (27%), Positives = 190/364 (51%), Gaps = 17/364 (4%)
Query: 85 LNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACI-L 141
+ +N+P+ IQ A+P L ++I +Q+G+GKTAAF + +L+++ + + + C+ L
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV-NALELFPQCLCL 59
Query: 142 APTRELAQQIKETFDSLGSL-MGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHL 200
APT ELA Q + +G + V+ + G + + + D+ ++ III TPG ++D
Sbjct: 60 APTYELALQTGRVVEQMGKFCVDVQVMYAIRG-NRIPRGTDITKQ--IIIGTPGTVLDWC 116
Query: 201 ENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL 259
K +L K++ V+DEAD ++D + F RI +P++ + LFSAT +
Sbjct: 117 FKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQML-LFSATFEDSVWHF 175
Query: 260 QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTFLIYLLNEFIGKSTIVFTRTKA 318
+ +P + + T++ + Q ++ K L + I+F +T+
Sbjct: 176 AERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRR 235
Query: 319 NAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDI 378
NA+ ++ + L G+L QR + F+ GK +L+ T+V ARG+D+ V I
Sbjct: 236 NAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTI 295
Query: 379 VINYDIPV------DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPK 432
V+N+D+PV D ++Y+HR+GRT R G+ G + +++ +L +++I+D + +
Sbjct: 296 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQ 355
Query: 433 ENVD 436
N +
Sbjct: 356 LNAE 359
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 142 bits (357), Expect = 1e-33
Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 4/226 (1%)
Query: 83 KNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY--YACI 140
K + +PTPIQ K IP L+ DI+G+A+TGSGKTAAF +P++ +L A I
Sbjct: 153 KRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVI 212
Query: 141 LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHL 200
L+P+RELA Q F +RS + GG S+ +Q +M P +IIATPGR + HL
Sbjct: 213 LSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFL-HL 271
Query: 201 ENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQ 260
+ +L+ ++Y+V DEADRL +M F L+ +L +PT R T LFSAT+ + +
Sbjct: 272 KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTT-RQTLLFSATLPNSLVDFV 330
Query: 261 RASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
+A L NPV + + + + L + + L+Y+L E I
Sbjct: 331 KAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEII 376
Score = 106 bits (265), Expect = 7e-23
Identities = 58/123 (47%), Positives = 82/123 (66%)
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
K+TI+F T+ + E IS L + + ++G L+Q+ R L F+AG SILV TDVA
Sbjct: 433 KATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVA 492
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLG 427
ARG+DIP + VINY +P SK ++HRVGRTARAG G + S+V++ +L +L +E LG
Sbjct: 493 ARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLG 552
Query: 428 KKL 430
KK+
Sbjct: 553 KKI 555
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 142 bits (357), Expect = 1e-33
Identities = 101/364 (27%), Positives = 189/364 (51%), Gaps = 17/364 (4%)
Query: 85 LNYNKPTPIQSKAIPPALKG--SDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACI-L 141
+ +N+P+ IQ A+P L ++I +Q+G+GKTAAF + +L+++ + + + C+ L
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV-NALELFPQCLCL 59
Query: 142 APTRELAQQIKETFDSLGSL-MGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHL 200
APT ELA Q + +G + V+ + G + + + D+ ++ III TPG ++D
Sbjct: 60 APTYELALQTGRVVEQMGKFCVDVQVMYAIRG-NRIPRGTDITKQ--IIIGTPGTVLDWC 116
Query: 201 ENTKGFNLRKLKYLVMDEADRLLDME-FGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL 259
K +L K++ V+DEAD ++D + F RI +P++ + LFSAT +
Sbjct: 117 FKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQML-LFSATFEDSVWHF 175
Query: 260 QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTFLIYLLNEFIGKSTIVFTRTKA 318
+ +P + + T++ + Q ++ K L + I+F +T+
Sbjct: 176 AERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRR 235
Query: 319 NAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDI 378
NA+ ++ + L G+L QR F+ GK +L+ T+V ARG+D+ V I
Sbjct: 236 NAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVTI 295
Query: 379 VINYDIPV------DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPK 432
V+N+D+PV D ++Y+HR+GRT R G+ G + +++ +L +++I+D + +
Sbjct: 296 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQ 355
Query: 433 ENVD 436
N +
Sbjct: 356 LNAE 359
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 140 bits (354), Expect = 3e-33
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)
Query: 212 KYLVMDEADRLLDMEFGPVLDRIL--NIIPT-QGRTTYLFSATMTSKIDKLQRASLT-NP 267
+YLV+DEADR+LDM F P + +I+ N +P+ + R T +FSAT +I L + L N
Sbjct: 12 RYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENY 71
Query: 268 VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS-TIVFTRTKANAERISNL 326
V AV T + ++Q ++ V K ++L+ LL+ S T+VF TK A ++
Sbjct: 72 VFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYY 131
Query: 327 CNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPV 386
N + +HGDL Q +R LDLF+ G ILVAT VAARGLDIP+V VINYD+P
Sbjct: 132 LNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPS 191
Query: 387 DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
D Y+HR+GRT R G G + S + + + + D++
Sbjct: 192 DVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLI 231
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 140 bits (354), Expect = 3e-33
Identities = 100/370 (27%), Positives = 180/370 (48%), Gaps = 29/370 (7%)
Query: 76 PELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQ- 134
P L+ + +P+PIQ ++IP + +++ A TGSGKT AFA+P+++++ +Q
Sbjct: 135 PSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQR 194
Query: 135 ---------PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
A +L PTRELA Q F + + + G + + A
Sbjct: 195 ADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEETDIQHA------ 248
Query: 186 PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGP------VLDRILNIIP 239
I+++TP R++ HL+ + L++LV+DE+DRL ++ G L I
Sbjct: 249 -DILVSTPNRIVFHLDK---IDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACD 304
Query: 240 TQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-PGGLKNTFL 298
+ FSAT + +++K + ++ V + + ++ Q L K +
Sbjct: 305 AKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIAI 364
Query: 299 IYLLNEFIGKSTIVFTRTKANAERISNLCNLLE--FSATALHGDLNQNQRTGALDLFKAG 356
LL +VF ++K A ++ L + ++ +++ + +R ++ F+ G
Sbjct: 365 RNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRG 424
Query: 357 KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDL 416
+ +LV T++ RGLD+ V +VINYD+P SYIHRVGRT RAG+SG +++ + D+
Sbjct: 425 EIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADM 484
Query: 417 ELILRIEDVL 426
+ I I V+
Sbjct: 485 KYIKSIATVI 494
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 136 bits (342), Expect = 8e-32
Identities = 92/354 (25%), Positives = 166/354 (45%), Gaps = 12/354 (3%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L EL+ + KP+ IQ A+ P G D+ +Q GSGKT I IL +
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
+ +LAP R +AQ+ E SLG + V +TC+ D + + H+++
Sbjct: 61 EDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCL-----GFDTTAENDKISHVLMG 115
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TP + ++ + + ++K V+DEAD +L F + + +P Q L SAT
Sbjct: 116 TPKDFLSNIPS----DTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMP-QDVQVVLLSAT 170
Query: 252 MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQ-TLMVVPGGLKNTFLIYLLNEFIGKST 310
M S++ + + +P++ V T++ + Q + V K L LL
Sbjct: 171 MPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQA 230
Query: 311 IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARG 370
++F T+ +++ + + HG++ N+R + F + +LV TD+ ARG
Sbjct: 231 LIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARG 290
Query: 371 LDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
++I ++INYD+ + ++Y+ R GR G G IS ++ D+ + +IE+
Sbjct: 291 MNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIEN 343
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 136 bits (342), Expect = 8e-32
Identities = 102/314 (32%), Positives = 158/314 (49%), Gaps = 37/314 (11%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L ++IEA + TP+Q++ IP D++ A TGSGKT AF +P + +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 134 ----QPYYAC--ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187
+P+ I++PTREL+ QI + ++ L + + M+ +++ +
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLEE-----EGAN 137
Query: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247
++I TPGRL D ++ + + R L+ L++DEADRLLDM F ++ I++ +P Q R T L
Sbjct: 138 LLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQ-RRTGL 196
Query: 248 FSATMTSKIDKLQRASLTNP-VKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306
FSAT T + L +A L NP +KC K++ L++LL E
Sbjct: 197 FSATQTQAVADLAKAGLRNPYLKCEADQ-------------------KSSQLVHLLIENK 237
Query: 307 GKSTIVFTRTKANAER----ISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
K +VF T A + IS + +L S HG ++Q R AL F +L+
Sbjct: 238 NKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLL 297
Query: 363 ATDVAARGLDIPSV 376
TDVAARGLDIP +
Sbjct: 298 CTDVAARGLDIPGI 311
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 133 bits (334), Expect = 7e-31
Identities = 93/270 (34%), Positives = 136/270 (49%), Gaps = 45/270 (16%)
Query: 138 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLM 197
A IL PTRELA Q + + +G++ C GG+ + +Q DL R I++ TPGR++
Sbjct: 119 AVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMI 178
Query: 198 DHLENTKG--FNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSK 255
D L G NLR++ YLV+DEADR+ F P + G++ T
Sbjct: 179 DVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQVG---------GKSVVCSDITQ--- 226
Query: 256 IDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGK-STIVFT 314
N V CA K+ LK L+ LL + + S+IVF
Sbjct: 227 ----------NAVICAEHQKF----------------LK---LLELLGMYYDEGSSIVFV 257
Query: 315 RTKANAERISNLCNLLEFSATA-LHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDI 373
+ A+ I + +++ A LHG ++Q+ R ++ FK G +LVAT VAARGLD+
Sbjct: 258 DKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDV 317
Query: 374 PSVDIVINYDIPVDSKSYIHRVGRTARAGR 403
++ +V+NYD P + Y+HRVGRT RAGR
Sbjct: 318 KNLILVVNYDCPNHYEDYVHRVGRTGRAGR 347
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 130 bits (327), Expect = 4e-30
Identities = 97/353 (27%), Positives = 160/353 (44%), Gaps = 59/353 (16%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L+P ++E Y + TPIQ +AIP L+ DIIG + Q+W
Sbjct: 315 LLPHILEVIDKCGYKESTPIQRQAIPFGLQNRDIIGRDR---------------QVWEAA 359
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATP 193
+ PT ++GG+S D L+ I+IATP
Sbjct: 360 R-------YPT----------------------VAVIGGISREDWGFRLLMGCEIVIATP 390
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253
G L+D LEN + L Y+V+DEADR++D+ F P + +IL +P Q + S
Sbjct: 391 GHLIDVLEN-RYLVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMP-QSEARHDESEDPE 448
Query: 254 SKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVF 313
+ + S K + + V+ + ++ K L+ +L + + +F
Sbjct: 449 KMLANFE------------SGKRKPHER-VEQVFLMSESEKRKKLLEILKQGFDPAITIF 495
Query: 314 TRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDI 373
K + ++ + ++A LHG Q QR AL K G + +LV TDVA G+DI
Sbjct: 496 VNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGIDI 555
Query: 374 PSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426
V +V+NYD+ + YIHR+GR +AG+SG +I+ +++ D + ++ +
Sbjct: 556 QDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAVFYELKQAI 608
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 130 bits (326), Expect = 6e-30
Identities = 103/352 (29%), Positives = 160/352 (45%), Gaps = 24/352 (6%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPI---LNQ 128
L L E++ A + LN PT IQ IP ++ ++ + TGSGKT A+ +PI L++
Sbjct: 117 LGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQVLSE 176
Query: 129 LWHDQQPYY----------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQ 178
L + + +L PTREL++Q+ D + RS + GG + Q
Sbjct: 177 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLHQDYHHARF--RSILVSGGSRIRPQ 234
Query: 179 ARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII 238
L +++ TPGR++ H+E + YLV+DEAD + D FGP + + L
Sbjct: 235 EDSLNNAIDMVVGTPGRILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPEIRKFL--A 291
Query: 239 PTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTF 297
P + + KL S ++ + + + GG K
Sbjct: 292 PLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEA 351
Query: 298 LIYLLNEFI--GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFK- 354
L+ +L + G +VF T ++ + + + + S HG++ QR L FK
Sbjct: 352 LLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKD 411
Query: 355 -AGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSG 405
G LV TD+AARGLD+ VD V+ +D P +S Y+HR GRTAR G G
Sbjct: 412 EEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 129 bits (325), Expect = 8e-30
Identities = 92/311 (29%), Positives = 158/311 (50%), Gaps = 11/311 (3%)
Query: 105 SDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGV 164
SD++ A++G+GKT F++ + L I+ PTRE++ QIKET + G
Sbjct: 50 SDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPT-GA 108
Query: 165 RSTCIVGGMSMMDQARDLMR-KPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLL 223
R++ VGG + DL + +P I+I TPGR+ L N+ + + V+DEAD+L+
Sbjct: 109 RTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQ-LVKLGAMNMSHVDFFVLDEADKLM 167
Query: 224 DMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTL- 282
D F ++ I+N +P Q R +FSAT +D L L+ ++ A ++ D
Sbjct: 168 DEVFRDDINIIINSLP-QIRQVAVFSATYPRNLDNL----LSTFLRDAALVRFNADDVQL 222
Query: 283 --VQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGD 340
++ +V L ++L +VF + E I+ T +
Sbjct: 223 FGIKQYVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSA 282
Query: 341 LNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTAR 400
++Q R A+D +A + ILV++D+ ARG+D +V++V+N D + ++Y HR+GR AR
Sbjct: 283 MSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAAR 342
Query: 401 AGRSGKSISLV 411
G G +++L+
Sbjct: 343 FGAHGAAVTLL 353
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 127 bits (319), Expect = 4e-29
Identities = 111/401 (27%), Positives = 175/401 (42%), Gaps = 53/401 (13%)
Query: 77 ELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY 136
++++A K N+++P IQ+ A P + G I Q+GSGKT A+ +P++ +L ++
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 137 YA---------CILAPTRELAQQIKETFDSLG-SLMGVRSTCIVGGMSMMDQARDLMRKP 186
++ +L PT ELA Q+ S+ S + RS + GG Q +L +
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLL-DMEFGPVLDRILNIIPTQGRTT 245
++IATPGR +L N L L+ ++DE D L D EF L ++N P +
Sbjct: 504 DVLIATPGRFT-YLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQ-- 560
Query: 246 YLF--------------------SATMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQ 284
YLF M ++ ++ A V C+ N +T +T Q
Sbjct: 561 YLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQ 620
Query: 285 TLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALH-----G 339
K T L+ ++ E TI+F ++ N+ ++ LH
Sbjct: 621 N--------KKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHA 672
Query: 340 DLNQNQRTGALDLFKAGKRS----ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRV 395
L+Q R + F + + LV TD A+RG+D VD V+ +D P D Y+ RV
Sbjct: 673 ALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRV 732
Query: 396 GRTARAGR-SGKSISLVSQYDLELILRIEDVLGKKLPKENV 435
GRTAR R GK+ V + L RI + K P +V
Sbjct: 733 GRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDV 773
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 126 bits (316), Expect = 8e-29
Identities = 99/267 (37%), Positives = 133/267 (49%), Gaps = 20/267 (7%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L P+++ A + L + TP+QS IP ++ D+ A TGSGKT AF IPIL L +
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 134 QPYY-----ACILAPTRELAQQIKETFDSLGSLMGVRSTCI-VGGMSM-MDQARDLMRKP 186
+ A I+ PTRELA QI E S + +GG + D R +
Sbjct: 76 EKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135
Query: 187 HIIIATPGRLMDHL-ENTKGFNL----RKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQ 241
+II+ATPGRL D +G +L R L LV+DEADRLLDM F ++ IL +P Q
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 242 GRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK-------YQTVDTLVQTLMVVPGGLK 294
R T LFSAT T +++ L RA L NPV+ +V K +T L MV K
Sbjct: 196 -RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEK 254
Query: 295 NTFLIYLLNEFIGKSTIVFTRTKANAE 321
L++ L + +VF T A E
Sbjct: 255 FNQLVHFLRNHKQEKHLVFFSTCACVE 281
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 124 bits (312), Expect = 2e-28
Identities = 103/329 (31%), Positives = 156/329 (47%), Gaps = 58/329 (17%)
Query: 138 ACILAPTRELAQQIK---ETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
A I+ P+RELA+Q E F S VRS ++GG+ + +Q LM+ HI++ TPG
Sbjct: 289 AIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPG 348
Query: 195 RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP---TQGRTTYLF--S 249
RL + + N+ L ++ V+DEAD LL + ++DR+ IP + GR + S
Sbjct: 349 RL-EEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCS 407
Query: 250 ATMTS-KIDKLQRASLTNP-----------------VKCAVSNKYQTVDTLVQTLM---- 287
AT+ + ++ K+ + P V C V + +DT Q+L
Sbjct: 408 ATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQ---MDTTWQSLRQPIG 464
Query: 288 ---------VVPGG------------LKNTFLIYLLNEFIGKSTIVFTRTKA---NAERI 323
V PG LK + ++ +++ I+F RTK N ER
Sbjct: 465 TDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERF 524
Query: 324 SNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYD 383
+S LHGD +R L++FK + L+ TDVAARGLDI + +IN
Sbjct: 525 LRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVT 584
Query: 384 IPVDSKSYIHRVGRTARAGRSGKSISLVS 412
+P D +Y+HR+GR RA R G +ISLV+
Sbjct: 585 LPDDKTNYVHRIGRVGRAERMGLAISLVA 613
Score = 58.2 bits (139), Expect = 3e-08
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
++PEL A L++ PT +Q++AIP L G D++ A+TGSGKT AF +PIL +W
Sbjct: 9 VLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVW 65
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 123 bits (308), Expect = 7e-28
Identities = 98/333 (29%), Positives = 150/333 (44%), Gaps = 59/333 (17%)
Query: 138 ACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMSMMDQARDLMRKPHIIIATPG 194
A I+ P+RELA+Q + +R I+GG++ DQ L I++ TPG
Sbjct: 289 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG 348
Query: 195 RLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIP---TQGRTTYLF--S 249
RL D L +T NL ++++LV+DEAD LL + ++R+ N IP + G+ + S
Sbjct: 349 RL-DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
Query: 250 ATMTS-KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV------------------- 289
AT+ S + KL + P + + DT+ ++ V
Sbjct: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD 467
Query: 290 ---------PGG------------LKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCN 328
PG LK + + + E I+F RTK + + +
Sbjct: 468 DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI 527
Query: 329 LL---------EFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIV 379
+FS LHGD ++R L+ FK G L+ TDVAARG+DI V V
Sbjct: 528 QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV 587
Query: 380 INYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
IN +P + ++Y+HR+GR RA R G +ISLV+
Sbjct: 588 INVTLPDEKQNYVHRIGRVGRAERMGLAISLVA 620
Score = 55.8 bits (133), Expect = 1e-07
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
+ ++PE+ +A + +++ PT IQ+++IP L G D++ A+TGSGKT AF+IP++ ++
Sbjct: 7 MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE 66
Query: 132 ---DQQ 134
DQQ
Sbjct: 67 TLKDQQ 72
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 123 bits (308), Expect = 7e-28
Identities = 107/354 (30%), Positives = 163/354 (45%), Gaps = 64/354 (18%)
Query: 72 LDLVPELIEACKN-LNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
L L P LI L + T +Q ++IP L+G D + +QTGSGKT A+ IP++ L
Sbjct: 235 LGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQ 294
Query: 131 HDQQPY------YACILAPTRELAQQIKETFDSLGSLMG----VRSTCIVGGMSMMDQAR 180
+ YA +L PTRELA Q +FD++ L+ + ++GG +
Sbjct: 295 AMESKIQRSDGPYALVLVPTRELALQ---SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKA 351
Query: 181 DLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII-- 238
L + +I+I+TPGRL+DH+++TK + +L++LV DEADR+LD+ F + ILN +
Sbjct: 352 RLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNA 411
Query: 239 PTQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK----YQTVDTLVQTLMVVPGGLK 294
Q R L SAT+T + +L SL +PV +V +K D VQ + P G K
Sbjct: 412 ECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDK 471
Query: 295 -NTFLI-YLLNEFI----GKSTIV----FTRTKANAERISNL------CNLLEFSAT--- 335
++F I L + + K +V F K E + C L+EF +
Sbjct: 472 LDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFL 531
Query: 336 -------------------------ALHGDLNQNQRTGALDLFKAGKRSILVAT 364
LHG + Q +RT F +R +L+ T
Sbjct: 532 QTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 122 bits (307), Expect = 9e-28
Identities = 105/367 (28%), Positives = 171/367 (45%), Gaps = 46/367 (12%)
Query: 99 PPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY-ACILAPTRELAQQIKETFDS 157
PP L+ D+ A TGSGKT + +P+L + A IL P + L QI + F
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKR 313
Query: 158 LGSLMGVRSTCIVGGMSMMD-QARDLMRKP-HIIIATPGRLMDHLENT--KGFNLRKLKY 213
GV + G + + +AR L P ++I+ATP RL+ HL + +L KL++
Sbjct: 314 WNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRF 373
Query: 214 LVMDEADRLLDMEFGPVLDRI------------LNIIPTQGRTTY--LFSATMTSKIDKL 259
L++DEADR+ + LD + L I Q R + SAT++ +++L
Sbjct: 374 LIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEEL 433
Query: 260 QRASLTNP---VKCAVSNKYQT-----VDTLVQTLMVVPGGLKNTFLI------------ 299
+L P AVS K T VD V + +P + + ++
Sbjct: 434 HLWNLFKPRLFSATAVSVKDITSGIPQVDH-VSGRLALPSSISHRLVVTDPKFHPLAVYQ 492
Query: 300 -YLLNEFIGKSTIVFTRTKANAERISNLCNLL---EFSATALHGDLNQNQRTGALDLFKA 355
N+F T++F +++ R++++ L +F L +R L+ F
Sbjct: 493 QITRNKF--NRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNK 550
Query: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
+ +L+ +DV ARG D+ VD VINY++P D K ++HR GRT RAG+ G IS+ +
Sbjct: 551 NENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKES 610
Query: 416 LELILRI 422
L +++
Sbjct: 611 KRLFVKM 617
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 121 bits (304), Expect = 2e-27
Identities = 103/362 (28%), Positives = 175/362 (47%), Gaps = 25/362 (6%)
Query: 90 PTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQ 149
PT +Q IP L G + +++TGSGKT ++ +P ++ L + ++ PTREL
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLL--ESGDKRLLVIVPTRELVS 136
Query: 150 QIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLR 209
Q+ + F + +R I G +S+ Q + R + I+TPGRL + LE ++
Sbjct: 137 QVGQVFRKFSEGL-LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLELK---SIG 192
Query: 210 KLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQ----RASLT 265
+Y+V+DEADRL+ + + IL + + FSAT + S+
Sbjct: 193 GFEYVVVDEADRLMQHDIRSDVTFILERMKPE--VASFFSATPFEWSGGTRILVGNVSVG 250
Query: 266 NPVK--CAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERI 323
V+ K + + L + L+ G L + N K IVF + E +
Sbjct: 251 RDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDR-NGLEVKKIIVFCNSIRTCENL 309
Query: 324 SNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYD 383
L LH +R ++ + G+R++L+ATD+ RG+DI VD+V+NYD
Sbjct: 310 HKRFRQL----LVLHSRRTMQERKAVIEALE-GERAVLIATDLGGRGIDIKDVDLVVNYD 364
Query: 384 IPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKK---LPK-ENVDKDA 439
+P Y+HR GRT R R G ++S++ + D E++ +++ ++ K+ +P NV +D
Sbjct: 365 LPRAVDGYVHRCGRTGRQ-RKGMALSMICREDREILPKLKRLVEKRGGTVPGFMNVKEDV 423
Query: 440 IL 441
IL
Sbjct: 424 IL 425
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 119 bits (299), Expect = 8e-27
Identities = 112/416 (26%), Positives = 186/416 (43%), Gaps = 26/416 (6%)
Query: 72 LDLVPELIEACK-NLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
+ + P+L+E + L T IQ + +P + A+TG GKT + +PI+++L
Sbjct: 113 MQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLL 172
Query: 131 HDQ-------QPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLM 183
+ IL P RELA QI + L ++ ++GG +
Sbjct: 173 QKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQF 232
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQ-- 241
+ I++AT G L L T + + ++++LV+DEAD LLD F L L P
Sbjct: 233 EEVDILVATLGAL-SKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLV 291
Query: 242 -----GRTTYLFSATM-TSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLK 294
G L SATM T+ + L + + ++ VS + ++ + + Q + + +
Sbjct: 292 QKEDAGTQMILASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADR 351
Query: 295 NTFLIYLLNEFIGKST--IVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDL 352
L+ L+ + K IVF+ ++ +S N + L+GD+ R G +
Sbjct: 352 PATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQ 411
Query: 353 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI---S 409
F+ G +L TDV +RGLD V+N+D P+ YIHR GR R G K++
Sbjct: 412 FQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNL 471
Query: 410 LVSQYDLELILRIEDV--LGKKLPKENVDKDAILALRDSVD-KANGEVVMELNRRN 462
+ S+ +++++ RIE G LP N + I+ R + KA G V L N
Sbjct: 472 ISSRREIDVVQRIEHAARTGGLLPDVNANIRNIINKRIVAEMKAAGMPVPALGSLN 527
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 118 bits (295), Expect = 2e-26
Identities = 93/321 (28%), Positives = 148/321 (45%), Gaps = 49/321 (15%)
Query: 83 KNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILA 142
+N+ Y PTPIQ K IP L+ ++G+ +TGSGKT + IP + + ++ ++
Sbjct: 23 RNILYEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQRAISGEK---TLVIV 79
Query: 143 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLEN 202
PT+EL Q + L +++A L+ I TPG++
Sbjct: 80 PTKELVIQARRVLKRLAR--------------GIEEAWKLIE-----ICTPGKI------ 114
Query: 203 TKGFNLRKLKYLVMDEADRLLDM-EFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQR 261
+G + LV+DE DR+L+ V DRI + Q FSAT+ ++
Sbjct: 115 -EGMSA---DMLVVDEIDRILEEPSLKSVFDRINESLSCQ---KVFFSATLPDHPLNMKV 167
Query: 262 ASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAE 321
+ + +T+ +P K L+ +L++ + TIVF TK E
Sbjct: 168 VEIETRIN----------ETVKHFFFYIPSESKEAALLRILDKT--RKTIVFAATKYAVE 215
Query: 322 RISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVIN 381
+ + N F + ++ ++ R F K SILV TDVAARGLDIP +D V+N
Sbjct: 216 LLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVAARGLDIPYLDTVVN 275
Query: 382 YDIPVDSKSYIHRVGRTARAG 402
YD+ D ++++HRVGR G
Sbjct: 276 YDL-CDERTFLHRVGRVRGMG 295
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 116 bits (291), Expect = 7e-26
Identities = 98/406 (24%), Positives = 182/406 (44%), Gaps = 54/406 (13%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPY- 136
++++ L + K +Q I AL+ +I+G A+TGSGKT AF IP++ +L + +
Sbjct: 100 ILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTND 159
Query: 137 -----YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIA 191
A I+APT+EL QI + F L + + ++ + + L + H+++
Sbjct: 160 GSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVT 219
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSAT 251
TPG+L+ + + + + YLVMDEAD LL + + +I + +P + + SAT
Sbjct: 220 TPGKLL-RMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQ-CLMTSAT 277
Query: 252 MTSKIDKLQRASLTNPVKC--AVSNKYQTVDTLVQTLMVVPGGLKNTFLI----YLLNEF 305
+ + L++ +T PV D L Q + G + F I + L
Sbjct: 278 LKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQ-YQLTCGSDEERFAILVAMFKLKLI 336
Query: 306 IGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATD 365
+G+S I+F T ++ + + + L+ + N R ++ F G I++A+D
Sbjct: 337 VGRS-ILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASD 395
Query: 366 VA--------------------------------------ARGLDIPSVDIVINYDIPVD 387
V+ +RG+D V V+N+D P
Sbjct: 396 VSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPET 455
Query: 388 SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKE 433
+ +YIHRVGRTAR G ++S + + +I++ + +++ ++
Sbjct: 456 TDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEINQQMGRK 501
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 114 bits (284), Expect = 4e-25
Identities = 95/314 (30%), Positives = 151/314 (47%), Gaps = 34/314 (10%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH-- 131
L +L + K + N+PTPIQ + P + G D++ A TGSGKT AF IP + +L
Sbjct: 706 LPQDLHDNLKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEF 765
Query: 132 -------DQQPY-YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL- 182
D++P I+APTREL Q T L G++ GG S + L
Sbjct: 766 EKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLR 825
Query: 183 -MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPT 240
+ +I++AT GRL D + N +L K+KY+V+DEADR++D ++FG + +I+
Sbjct: 826 SFSQLNILVATMGRLQDFV-NAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGE 884
Query: 241 QGRTTYLFSATMTSKIDKLQRASLTNPVKCAVS----NKYQTVDTLV-QTLMVVPGGLKN 295
+ + T LFSA+ + + LQ L VK + +K+ T + + Q ++ VP K
Sbjct: 885 RTQQTVLFSASFS---EDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKR 941
Query: 296 TFLIYLLN------------EFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQ 343
+ LL + T++F + + ++ L + S ++H NQ
Sbjct: 942 DAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQ 1001
Query: 344 NQRTGALDLFKAGK 357
QR LD F+ GK
Sbjct: 1002 EQRDRTLDDFRRGK 1015
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 108 bits (269), Expect = 2e-23
Identities = 84/255 (32%), Positives = 127/255 (48%), Gaps = 22/255 (8%)
Query: 168 CIV-GGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDME 226
C+V G + Q + L H+++ATPG L+D +E K L KYLV+DEADR+LDM
Sbjct: 220 CVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMERGK-IGLDFCKYLVLDEADRMLDMG 278
Query: 227 FGPVLDRIL--NIIPTQG-RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLV 283
FGP + IL + +P +G +FSAT ++I L R L + AV T +T+
Sbjct: 279 FGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSETIT 338
Query: 284 QTLMVVPGGLKNTFLIYLLNEFIGKS--TIVFTRTKANAERISNLCNLLEFSATALHGDL 341
Q ++ V K +FL+ LLN GK T+VF TK + + N + T++HGD
Sbjct: 339 QEVVWVEEPDKRSFLLDLLNA-PGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQ 397
Query: 342 NQNQRTGALDLFKAGKRSILVATDVAARGLDIPSV-------DIVINYDIPVDSKSYIHR 394
+Q R G G S+L+ + + G S+ + N+D+P D + Y+
Sbjct: 398 SQRDREG-------GPSSVLLGENPNSSGYSCGSMKTRHFKCETCFNFDLPSDIEEYVPC 450
Query: 395 VGRTARAGRSGKSIS 409
+G T G G + S
Sbjct: 451 IGCTGCVGIQGLATS 465
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 106 bits (265), Expect = 7e-23
Identities = 91/378 (24%), Positives = 175/378 (46%), Gaps = 32/378 (8%)
Query: 78 LIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY 137
+++ ++ Y+ PTPIQ++ A +G +I+ ++ G+GKT + +P + ++ H+Q+
Sbjct: 43 ILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKM-HNQRGLM 101
Query: 138 -------ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIII 190
IL RE A ++ + + +R+ C++G A + +++
Sbjct: 102 QHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGHA-----ECDLLV 156
Query: 191 ATPGRLMDHLENTKGF-NLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
A+ GRL+ ++N K L + YLV+D DR++D+ + R+L + + + S
Sbjct: 157 ASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHAQLI-VSS 215
Query: 250 ATMTSKIDKLQ----------RASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLI 299
+ +S + ++ R N + + N Q V+ +V L V +K I
Sbjct: 216 TSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVE-VVNGLSKVERLMKELTAI 274
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRS 359
Y ++ GK I R K E + + N + +HG + G + F G +
Sbjct: 275 YDTSDIPGKVVIYVKRQKVVEELVDLIRNCVP--CEGIHGGRTAQENQGIIHDFGTGAYN 332
Query: 360 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTA--RAGRSGKSISLVSQYDLE 417
I+VAT + + LD+P + VINYD P + Y+ R+ RT R+ + IS + + +
Sbjct: 333 IIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTGCLSYNRNCEVISFFTMANYK 392
Query: 418 LILRIEDVLGKKLPKENV 435
L+ + D L K+ K+ +
Sbjct: 393 LVTEVVDFL--KICKQEI 408
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 99.0 bits (245), Expect = 1e-20
Identities = 60/231 (25%), Positives = 111/231 (47%), Gaps = 52/231 (22%)
Query: 183 MRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQG 242
M PHII+ TPGR+ D L N + + + +K V+DEAD +L F + I ++ +
Sbjct: 57 MEAPHIIMGTPGRVSDML-NWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSNT 115
Query: 243 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLL 302
+ L SAT+ S + ++ + + +P++ V + T
Sbjct: 116 QVV-LLSATIPSDVLEVTKKFMRDPIRILVKKEELT------------------------ 150
Query: 303 NEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
L +F+ +A+HGD++Q +R + +++G +L+
Sbjct: 151 --------------------------LKDFTVSAMHGDMDQKERDVVMREYRSGSSRVLI 184
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413
TD+ RG+D+ + +VINYD P + ++YIHR+GR + G G +I++V++
Sbjct: 185 TTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMVAE 235
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/203 (28%), Positives = 110/203 (53%), Gaps = 5/203 (2%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133
L PEL+ A + + P+ +Q + IP A+ G D++ A++G GKTA F + L Q+
Sbjct: 51 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 110
Query: 134 QPYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRK-PHIIIA 191
++ TRELA QI + ++ M V+ + GG+S+ L + PH+++
Sbjct: 111 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 170
Query: 192 TPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSA 250
TPGR++ + N + F+L+ +K+ V+DE D++L+ ++ + I + P + + +FSA
Sbjct: 171 TPGRILALVRN-RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHE-KQCMMFSA 228
Query: 251 TMTSKIDKLQRASLTNPVKCAVS 273
T++ I + R + + + V+
Sbjct: 229 TLSKDIRPVCRKFMQDVSRARVA 251
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 94.4 bits (233), Expect = 4e-19
Identities = 114/406 (28%), Positives = 167/406 (41%), Gaps = 89/406 (21%)
Query: 90 PTPIQSKAIP--------PALKGSDIIGLAQTGSGKTAAFAIPILN----------QLWH 131
P+PIQ+ AI P L+ I A+TGSGKT A+ IP+++ +LW
Sbjct: 137 PSPIQTVAIKRISKNLMDPKLQIHAIA--AETGSGKTMAYLIPLIDYLKRQELETPELWE 194
Query: 132 DQQPYY---ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHI 188
+ + IL PT EL Q+ ET +L+G+ S S D ++ + I
Sbjct: 195 TLRKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFKWDKATSYRDLLENIKNRIDI 254
Query: 189 IIATPGRLMD----HLENTKGFNLRKLKYLVMDEADRLLDM----EFGPVLDRILNI--- 237
++ TPG+L++ + L K+ ++V+DEAD LLD E + RI NI
Sbjct: 255 LVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHL 314
Query: 238 ------IPTQGRTTY--LFSAT---MTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQT 285
IP + T LF MT ++ KL A + A+S K + L QT
Sbjct: 315 IFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKIKALAQT 374
Query: 286 LMVV------PGGLKNTF-----------LIYLLNEFIGKSTIVFTRTKANAERISNL-- 326
L + PG K ++ LLN+ G + I T ER +
Sbjct: 375 LYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEERSEKIMP 434
Query: 327 -------------------CNLLEF---SATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
+L +F + + G L G K+ +LV T
Sbjct: 435 FLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKS--LHVLVTT 492
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISL 410
D+ ARGL+ V V+ YD+P S IHRVGRTAR + G+ L
Sbjct: 493 DLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGGRVFML 538
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 93.2 bits (230), Expect = 8e-19
Identities = 48/123 (39%), Positives = 69/123 (56%)
Query: 293 LKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDL 352
LK +++ ++ IVF RTK + + + SA LHGD + +R +L+
Sbjct: 515 LKGIYVVRAIHALQMDKAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEG 574
Query: 353 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 412
FK G LV +DV ARGLD+ V VI+ +P + Y+HR+GR RA R G SISLVS
Sbjct: 575 FKKGIIRFLVCSDVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVS 634
Query: 413 QYD 415
+Y+
Sbjct: 635 EYE 637
Score = 63.2 bits (152), Expect = 9e-10
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 74 LVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLW 130
++PEL +A +LN+ PT +QS+AIP L G+D + A+TGSGKT AF++PI +W
Sbjct: 9 IIPELSDALSSLNWTLPTAVQSEAIPAILGGADALIAAETGSGKTGAFSLPIAQIVW 65
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 92.0 bits (227), Expect = 2e-18
Identities = 90/371 (24%), Positives = 170/371 (45%), Gaps = 41/371 (11%)
Query: 87 YNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRE 146
++ P Q IP LK +++I A TGSGKT ++ +P++ + + IL P +
Sbjct: 45 FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMA--RGRSLFGAILVPGKP 102
Query: 147 LAQQIKETFDSLGSLMGVRSTCIVG-------------GMSMMDQARDLMRK-------- 185
L +Q+ + G++ + G G + D MR+
Sbjct: 103 LVRQVYRVVREIKH-EGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRA 161
Query: 186 -PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRT 244
++I TP ++ + ++ +R + +LV+DEAD L++ E V IL++I +
Sbjct: 162 SARVLIGTPRSVLGLMSMSE---IRNVTHLVIDEADLLINPETVGVFASILSVIEMEDIH 218
Query: 245 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNE 304
FSATM + ++ ++ + K V +K + +D + + +K+ L+ ++ +
Sbjct: 219 ISCFSATMNEYVSEVIE-TVKSITKIRVVSK-RLIDH--EFVFGTSRKIKHLSLLQIIAD 274
Query: 305 FIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 364
I T++F + + E +S L +A++ + +Q LD F+ K L T
Sbjct: 275 GIESPTLIFVKDEKTGEALSML-----LGKSAVYRE-DQEGSGEVLDGFRLKKIWYLFTT 328
Query: 365 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
D +RG+D ++ VINYD+P ++HR+GR R + K ++ S D I + +
Sbjct: 329 DSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINRNCQGQKIYTIYSSEDFGRIGVVAE 388
Query: 425 VL---GKKLPK 432
L G ++PK
Sbjct: 389 FLEENGHEVPK 399
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 89.7 bits (221), Expect = 9e-18
Identities = 75/286 (26%), Positives = 135/286 (46%), Gaps = 35/286 (12%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L+ L+ KP+ IQ +AI P ++G +I AQ+G+GK A F+I IL+Q+
Sbjct: 82 MNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILHQIEL 141
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDL-MRKPHIII 190
D + T+ L Q++ +LG M +GG ++ + + L M PHII+
Sbjct: 142 D--------VKATQALIQKV---VIALGDHMDASCHTCIGGTNVHAEVQKLQMEAPHIIV 190
Query: 191 ATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTT--YLF 248
TPG + D L N + + + +K V+D+ D +L F D+I I T L
Sbjct: 191 GTPGHVFDML-NWRYLSPKYIKMFVLDKTDEMLSHGF---KDQIYGIFQELNSNTQVVLP 246
Query: 249 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP---------GGLKNTFLI 299
SATM S + ++ + + + V + T++ + Q + + G L T I
Sbjct: 247 SATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDTLGDLYETLTI 306
Query: 300 YLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQ 345
++F T+ A+ ++ + +F+ +A+HGD++Q +
Sbjct: 307 --------AQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 88.6 bits (218), Expect = 2e-17
Identities = 82/341 (24%), Positives = 147/341 (43%), Gaps = 28/341 (8%)
Query: 114 GSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGS-----LMGVRSTC 168
GSGKT + + I + + + A I+ PTREL Q+ + L + + G
Sbjct: 81 GSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMA 140
Query: 169 IVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLL--DME 226
++ G ++ L +P I+ + H+ F + ++ LV+DE D L +
Sbjct: 141 LLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQ 200
Query: 227 FGPVLDRILNIIPTQGRTTYLFSATMTSKIDKL-----QRASLTNPVKCAVSNKYQTVDT 281
G V + + R T SA++ + Q+ + + V VS
Sbjct: 201 VGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLC 260
Query: 282 LVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERIS----NLCNLLEFSATA- 336
L+ ++ K+ L+ LL +S I+F ++ + + + L+EF T+
Sbjct: 261 LLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSY 320
Query: 337 --------LHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDS 388
L GD+N N R +L + G +LV+TD+AARG+D+P + N+D+P
Sbjct: 321 KGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTV 380
Query: 389 KSYIHRVGRTARAGRSGKS---ISLVSQYDLELILRIEDVL 426
Y+HR GR R S + +L++ + ++ R E+ L
Sbjct: 381 TDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYENEL 421
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 81.3 bits (199), Expect = 3e-15
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 170 VGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGP 229
+GG + +A L +II+AT GRL+DH++NT GF + L+ LV+DEADR+LD+ F
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 230 VLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASL 264
L +I+ ++ T R T LFSAT T K++ L R SL
Sbjct: 61 ELKQIIKLLLTH-RQTMLFSATQTQKVEDLARISL 94
Score = 52.8 bits (125), Expect = 1e-06
Identities = 36/106 (33%), Positives = 50/106 (46%), Gaps = 8/106 (7%)
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
+ T++F+ T+ +++ +L + GD + N DL L+ TDVA
Sbjct: 73 RQTMLFSATQT--QKVEDLARISLKKEPLYVGDDDDNANETVADL------GTLLCTDVA 124
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413
ARGLDI VD ++ YD P D K YIH V A A S SQ
Sbjct: 125 ARGLDITEVDCIVQYDPPDDPKEYIHSVVLGAVASPDAVSAECSSQ 170
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 78.2 bits (191), Expect = 3e-14
Identities = 44/114 (38%), Positives = 64/114 (55%)
Query: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
++L L+ KP+ IQ +AI P +KG +I AQ+G+GK A FAI IL Q+
Sbjct: 21 MNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQQIEL 80
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRK 185
D + A +LAPT+ELAQQI++ +LG MG + G +M + + L K
Sbjct: 81 DLKATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRAEVQKLQTK 134
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 73.9 bits (180), Expect = 5e-13
Identities = 54/178 (30%), Positives = 91/178 (50%), Gaps = 26/178 (14%)
Query: 81 ACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH--------- 131
A ++ +++P+ Q+ IP L G D+I A+TGSGKT + PI++QL +
Sbjct: 94 ALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTN 153
Query: 132 -DQQPY----YACILAPTRELAQQIKETFDSLGSLMG---VRSTCIVGGMSMMDQARDLM 183
+++P+ + IL P L +Q+ + L G +R + G D
Sbjct: 154 REERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPD------ 207
Query: 184 RKPHIIIATPGRLMDHLE---NTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNII 238
R P II++TP L++++E N + LR +KY+V DEAD LL F + R++N++
Sbjct: 208 RLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINML 265
Score = 67.0 bits (162), Expect = 6e-11
Identities = 45/156 (28%), Positives = 73/156 (45%), Gaps = 10/156 (6%)
Query: 278 TVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATAL 337
TVD+ V L+ NT + T+VF T E ++++
Sbjct: 404 TVDSQVDALIEAVKNNNNTNT---------ERTMVFANTVEAVEAVADILEKASIQCYRY 454
Query: 338 HGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGR 397
H + ++R L F+ + V TD AARG+D+P+V VI D + ++HR+GR
Sbjct: 455 HKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 398 TARAGRSGKSISLVSQYDLELILRIEDVLGKKLPKE 433
TARAG+ G SL ++ + +L+ I + + P E
Sbjct: 514 TARAGQYGTVTSLYTEANRDLVEAIREAVKMGQPVE 549
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 70.1 bits (170), Expect = 7e-12
Identities = 36/71 (50%), Positives = 50/71 (69%), Gaps = 1/71 (1%)
Query: 194 GRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFSATMT 253
GRL+DH++NT GF + L+ LV+DEADR+LD+ F L +I+ ++ T R T LFSAT T
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTH-RQTMLFSATQT 90
Query: 254 SKIDKLQRASL 264
K++ L R SL
Sbjct: 91 QKVEDLARISL 101
Score = 55.8 bits (133), Expect = 1e-07
Identities = 33/90 (36%), Positives = 47/90 (51%), Gaps = 8/90 (8%)
Query: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
+ T++F+ T+ +++ +L + GD + N DL L+ TDVA
Sbjct: 80 RQTMLFSATQT--QKVEDLARISLKKEPLYVGDDDDNANETVADL------GTLLCTDVA 131
Query: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGR 397
ARGLDI VD ++ YD P D K YIH VGR
Sbjct: 132 ARGLDITEVDCIVQYDPPDDPKEYIHSVGR 161
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 68.6 bits (166), Expect = 2e-11
Identities = 48/162 (29%), Positives = 83/162 (50%), Gaps = 7/162 (4%)
Query: 245 TYLFSATMTSKIDKLQRA---SLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYL 301
T+ F+ + ++ + Q L N + + + + L + P + + +Y
Sbjct: 504 TFFFAIPLIERLQRNQETIFKKLLNKARELANQVAKDFKDKTRKLSMRPAVIGDVLQVYS 563
Query: 302 LNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSIL 361
+E G++ I+F T+ N ++ ++ + +A LHGD+ Q+QR L F+ +L
Sbjct: 564 GSE--GRA-IIFCETRKNVTEMAMNPHIKQ-NAQCLHGDIAQSQREITLKGFREDSFKVL 619
Query: 362 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGR 403
VAT+VAA L IP VD+VI + P D ++ IHR G T RAG+
Sbjct: 620 VATNVAAHSLHIPEVDLVIQHSPPQDVEARIHRSGCTGRAGQ 661
>CE13130_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 873
Score = 68.6 bits (166), Expect = 2e-11
Identities = 86/367 (23%), Positives = 140/367 (37%), Gaps = 43/367 (11%)
Query: 73 DLVPELIEACKN-LNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
D+ EL + K+ +N+ Q + I L G D L TG+GK+ + +P +
Sbjct: 115 DMNKELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVIL--- 171
Query: 132 DQQPYYACILAPTRELAQQIKETFDSLG--------SLMGVRSTCIVGGMSMMDQARDLM 183
P +++P R L + K LG L I + + + L+
Sbjct: 172 ---PGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLL 228
Query: 184 RKPHIIIATPGRLMDHLENTKGFNLRK---LKYLVMDEADRLLDM--EFGPVLDRILNII 238
I+ GRL N+ F+L + L V+DEA + +F P ++ ++
Sbjct: 229 YVTPEKISASGRL-----NSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLR 283
Query: 239 PTQGRTTY---LFSATMTSKID-------KLQRASLTNPVKCAVSNKYQTVDTLVQTLMV 288
+AT T KI K+Q + L + KY + ++L+
Sbjct: 284 EKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLIN 343
Query: 289 VPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTG 348
V +K + GKS IV+ ++ E + + SA H LN N R
Sbjct: 344 VVEKMKQLYP--------GKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVS 395
Query: 349 ALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSI 408
+ A K ++ AT G+D P V VI+Y +P + Y GR R G +
Sbjct: 396 VQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCL 455
Query: 409 SLVSQYD 415
L S +D
Sbjct: 456 MLYSYHD 462
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 67.4 bits (163), Expect = 5e-11
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 85 LNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPT 144
+ + KP+P Q ++IP AL G DI+ A+ G+GK++A IP+L +L + ++ PT
Sbjct: 67 MGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDLKKDTIQTIVIVPT 126
Query: 145 RELAQQIKETFDSLGSLM-GVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMD 198
A Q+ + + M GV+ GG + D L H++IA PGR+++
Sbjct: 127 GGPALQVSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLDDTVHMVIAAPGRILN 181
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 67.4 bits (163), Expect = 5e-11
Identities = 85/374 (22%), Positives = 153/374 (40%), Gaps = 55/374 (14%)
Query: 93 IQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY---------ACILAP 143
+Q +I +G ++ A TG GKT AF IP + ++Q I+A
Sbjct: 119 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILIMAS 178
Query: 144 TRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH--------IIIATPGR 195
T L Q+ F+ ++G++ C+ + D D + H I T G+
Sbjct: 179 TSALVDQL---FNRCELILGLQ--CMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGK 233
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQG---------RTT 245
L +E L LK +++DEAD+++D FGP ++ IL+ + + T
Sbjct: 234 LKATIE-CGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCFFSAT 292
Query: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIY----- 300
Y +A T + LQ L +V + + Q ++ V G N +
Sbjct: 293 YNKNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDIRSHPWVIK 352
Query: 301 --LLNEFI---------------GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQ 343
++ + I ++ +F T +++ L ++ + + +
Sbjct: 353 MGIIRKLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQVTMALRQLGYNFKPVCSMITK 412
Query: 344 NQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGR 403
NQ+ ++ + K +V T++ ARG+D+ SV I ++ D +Y HR+GR R G
Sbjct: 413 NQQLVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGRDGC 472
Query: 404 SGKSISLVSQYDLE 417
GKS LV + L+
Sbjct: 473 GGKSTVLVEHHQLQ 486
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 67.0 bits (162), Expect = 6e-11
Identities = 37/98 (37%), Positives = 58/98 (58%), Gaps = 2/98 (2%)
Query: 169 IVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFG 228
I+GG + +A + + +I++ PGRL+ H++ T F+ L LV+DEA R+LD+ F
Sbjct: 116 IIGGKYLKHEA-ERINNINILVCAPGRLLQHMDETVSFHATALLMLVLDEAYRILDVGFA 174
Query: 229 PVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTN 266
++ I+ +P + R T LFSAT T + L R SL N
Sbjct: 175 DTMNAIIENLPKK-RQTLLFSATQTISVKDLARLSLKN 211
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 63.2 bits (152), Expect = 9e-10
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 16/88 (18%)
Query: 80 EACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD------- 132
E K Y++PTP+Q +IP G D++ AQTGSGKTAAF +P++N + D
Sbjct: 376 ENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHR 435
Query: 133 ---------QQPYYACILAPTRELAQQI 151
+Q A +L+PTREL+ Q+
Sbjct: 436 SVTSSGGRKKQYPSALVLSPTRELSLQV 463
>At1g10930 [L] KOG0351 ATP-dependent DNA helicase
Length = 665
Score = 60.5 bits (145), Expect = 6e-09
Identities = 79/359 (22%), Positives = 139/359 (38%), Gaps = 45/359 (12%)
Query: 92 PIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQI 151
P Q + I + GSD+ L TG GK+ + +P L +++P L Q
Sbjct: 127 PNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALIC------GGITLVISPLVSLIQ-- 178
Query: 152 KETFDSLGSLM--GVRSTCIVGGMSMMDQARDLMR------KPHIIIATPGR------LM 197
D + +L+ + + + GM +Q + K ++ TP + L+
Sbjct: 179 ----DQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLL 234
Query: 198 DHLENTKGFNLRKLKYLVMDEA--------DRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
HLEN L L V+DEA D D + +L + IP T +
Sbjct: 235 RHLENLNSRGL--LARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTA---T 289
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
AT + K D +Q L N C V + L +++ ++ +
Sbjct: 290 ATASVKEDVVQALGLVN---CVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDEC 346
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
I++ ++ + E++S A HG + QR + + +I+ AT
Sbjct: 347 GIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGM 406
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLGK 428
G++ P V VI++ +P + Y G RAGR G+ S V Y +R++ ++ +
Sbjct: 407 GINKPDVRFVIHHSLPKSIEGYHQECG---RAGRDGQRSSCVLYYGYGDYIRVKHMISQ 462
>CE26682 [R] KOG0353 ATP-dependent DNA helicase
Length = 674
Score = 58.9 bits (141), Expect = 2e-08
Identities = 81/342 (23%), Positives = 139/342 (39%), Gaps = 49/342 (14%)
Query: 83 KNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPIL--NQLWHDQQPYYACI 140
+ + K P+Q AI + D + + TG GK+ + +P L N L A +
Sbjct: 103 EQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGL--------ALV 154
Query: 141 LAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQAR------DLMRKPHIIIATPG 194
++P L +++ L SL G+ S+ + S + R + K ++ TP
Sbjct: 155 VSP---LISLVEDQILQLRSL-GIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPE 210
Query: 195 RL------MDHLENTKGFNLRKLKYLVMDEA--------DRLLDMEFGPVLDRILNIIPT 240
+L M+ LE K ++ LK + +DE D D F VL R +P
Sbjct: 211 KLAKSKKMMNKLE--KSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPI 268
Query: 241 QGRTTYLFSATMTSKIDKLQ-RASLTNPVKCAVSN-KYQTVDTLVQTLMVVPGG---LKN 295
G T S + D L +A+LT SN KY+ V PG
Sbjct: 269 LGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQK--------PGSEDECTE 320
Query: 296 TFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKA 355
+ +F G++ I++ ++ + E+++ A H + R+GA + +
Sbjct: 321 EIAKTIKRDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWIS 380
Query: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGR 397
GK ++VAT G+D P+V VI++ +P ++Y R
Sbjct: 381 GKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQASAR 422
>7294377 [L] KOG0352 ATP-dependent DNA helicase
Length = 1058
Score = 57.8 bits (138), Expect = 4e-08
Identities = 86/350 (24%), Positives = 140/350 (39%), Gaps = 41/350 (11%)
Query: 83 KNLNYNK-PTPIQSKAIPPALKGS-DIIGLAQTGSGKTAAFAIPIL---NQLWHDQQPYY 137
K+ ++K + +Q KA+ A+K D+ TGSGK+ F +P L NQ+ P
Sbjct: 13 KHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSPLL 72
Query: 138 ACILAPTRELAQQIKETFDSLGSLMGV--RSTCIVGGMSMMDQARDLMRKPHIIIATPGR 195
A I L + +K DSL S M R I+ ++ + L P A
Sbjct: 73 ALIKDQIDHLTK-LKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQ--AATKF 129
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLDM--EFGPVLDRILNIIPTQGRTTYLF---SA 250
D L+ N KL Y +DEA + +F P ++ + +L +A
Sbjct: 130 FQDLLQTLHKHN--KLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATA 187
Query: 251 TMTSKIDKLQRASLTNPV------------------KCAVSNKYQTVDTLVQTLMVVPGG 292
+ K D ++ L PV K ++ + +Q + + + P
Sbjct: 188 SREVKEDIYKQLRLHQPVAQFSTPSFRKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKE 247
Query: 293 LKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDL 352
K+T + IV+ RT+ ER++ A A H L +RT +
Sbjct: 248 FKDT------PKPQRGCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEA 301
Query: 353 FKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
+ G + I+ AT+ G+D PSV VI++D+P + +Y GR R G
Sbjct: 302 WMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDG 351
>CE23511 [R] KOG0354 DEAD-box like helicase
Length = 811
Score = 57.4 bits (137), Expect = 5e-08
Identities = 52/187 (27%), Positives = 92/187 (48%), Gaps = 30/187 (16%)
Query: 311 IVFTRTKANAERISNLCN--LLEFS-----------ATALHGDLN--QNQRTGALDLFKA 355
I+F RTK A+ ++ + N L E +TA D++ + ++ L +F
Sbjct: 478 IIFVRTKKEADFLNYVLNDRLHELGIKSDWMSGQKKSTASSADISASKQKQMEKLKMFAD 537
Query: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 415
G+ ILV+T VA GLDIP +VI Y+ + +++ R GR ARA R+ K + + +
Sbjct: 538 GENQILVSTSVAEEGLDIPECSLVIKYNYATNETAHVQRRGR-ARA-RNSKCVLITN--- 592
Query: 416 LELILRIEDVLGKKLPKENVDKDAILALRDS-------VDKANGEVVMELNRRNKEKQAR 468
+ L +++ L KEN+ + I +++S VD+ + +V + R + +K R
Sbjct: 593 -SIALHVQE--SNNLAKENLMTETISLIQNSPGEFRQCVDEESNKVWPRIQREDTDKAQR 649
Query: 469 GKGRRGR 475
K + R
Sbjct: 650 IKEQINR 656
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 57.4 bits (137), Expect = 5e-08
Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 52/331 (15%)
Query: 93 IQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYY---------ACILAP 143
+Q +I +G ++ A TG GKT AF IP + ++Q I+A
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 144 TRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH--------IIIATPGR 195
T L Q+ F+ ++G++ C+ + D D + H I T G+
Sbjct: 79 TSALVDQL---FNRCELILGLQ--CMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGK 133
Query: 196 LMDHLENTKGFNLRKLKYLVMDEADRLLD-MEFGPVLDRILNIIPTQGRTTYLFSATMTS 254
L +E L LK +++DEAD+++D F P ++ IL
Sbjct: 134 LKATIE-CGDVCLDNLKTIILDEADKMIDNCAFVPDINWIL------------------- 173
Query: 255 KIDKLQRASLTNPVKC---AVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKSTI 311
D+L+ +L N C A NK + L + G + NE I
Sbjct: 174 --DQLKEENLENLQSCFFSATYNKNANGTIALTVLQMRMLGEDDPCKDGPYNETIA---- 227
Query: 312 VFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGL 371
+F T +++ L ++ + + +NQ+ ++ + K +V T++ ARG+
Sbjct: 228 IFCETVQRVTQVTMTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGI 287
Query: 372 DIPSVDIVINYDIPVDSKSYIHRVGRTARAG 402
D+ SV I ++ D +Y HR+GR + +G
Sbjct: 288 DVSSVKHTIIMEMSADFDTYKHRIGRVSISG 318
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 57.0 bits (136), Expect = 6e-08
Identities = 84/369 (22%), Positives = 145/369 (38%), Gaps = 45/369 (12%)
Query: 92 PIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQI 151
P Q + I L G+D L TG GK+ + +P + +++P + L
Sbjct: 740 PNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAI------LTEGVTIVISPLKSLI--- 790
Query: 152 KETFDSLGSL--MGVRSTCIVGGMSMMDQA---RDLMRKPHII---------IATPGRLM 197
FD + L + + + + G M D RDL +P ++ I++ R
Sbjct: 791 ---FDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQ 847
Query: 198 DHLENTKGFNLRKLKYLVMDEADRLLDM--EFGP------VLDRILNIIPTQGRTTYLFS 249
D L+ N + V+DEA + +F P VL + +PT T +
Sbjct: 848 DTLDTLNSNNY--ISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTA---T 902
Query: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS 309
AT ++D L + +L N K +S+ + + + L + Y+ ++ S
Sbjct: 903 ATPRVRLDILAQLNLKN-CKWFLSS-FNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFS 960
Query: 310 TIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAAR 369
I++ ++ + S A + H L R + GK ++ AT
Sbjct: 961 GIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGM 1020
Query: 370 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL-GK 428
G+D P V V++Y +P + Y G RAGR G + Y+ +LRI+ +L
Sbjct: 1021 GIDKPDVRFVLHYSLPKSIEGYYQEAG---RAGRDGDVADCILYYNYSDMLRIKKMLDSD 1077
Query: 429 KLPKENVDK 437
K + NV K
Sbjct: 1078 KALQYNVKK 1086
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 55.8 bits (133), Expect = 1e-07
Identities = 78/347 (22%), Positives = 132/347 (37%), Gaps = 36/347 (10%)
Query: 102 LKGSDIIGLAQTGSGKTAAFAIPIL----NQLWHDQQPYYACILAPTRELAQQIKETFDS 157
L ++I + TG GK+ +F IP L Q +L P L Q + +
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVNE 1263
Query: 158 LGSLMGVRSTCIVGGMSMMDQARDLMRK-PHIIIATPGRLMDHLENTKGFN----LRKLK 212
G L+ C + D L + P + I T + + + F L +L
Sbjct: 1264 KGLLV-----CSGNWTAFKDVRLTLETQLPDLFILTYESALTN-SGLRFFESLATLGRLA 1317
Query: 213 YLVMDEADRLLDM-EFGPVLDRILNIIPTQGRTTYLFSATMTSKIDKLQRASLTNPVKCA 271
+V+DEA LL + L R + +L SAT +++ + R + C
Sbjct: 1318 RVVIDEAHLLLTSGAWRTALSRASRLSGLYA-PLHLLSATFPRQLEMVARQTF-----CT 1371
Query: 272 VSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKS--------TIVFTRTKANAERI 323
+ T + + NT + L + ++ I+F RTK + E I
Sbjct: 1372 NFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYI 1431
Query: 324 SNLCNLLEFSA----TALHGDLNQNQRTGALDLFKA--GKRSILVATDVAARGLDIPSVD 377
+ + A T GD++ +R D F+ GK I++AT G++ V
Sbjct: 1432 HRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVR 1491
Query: 378 IVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIED 424
+V++Y +P S Y+ GR R G+ + +YD +ED
Sbjct: 1492 LVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYVED 1538
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 54.7 bits (130), Expect = 3e-07
Identities = 75/341 (21%), Positives = 134/341 (38%), Gaps = 44/341 (12%)
Query: 94 QSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKE 153
Q +AI L GS + + TG+GK+ + IP + P +++P L
Sbjct: 274 QLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMIL------PGITLVVSPLVSLM----- 322
Query: 154 TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH-----IIIATPGRLMDHLENTKGFNL 208
D L L + ++ ++A + +RK ++ +P RL++ +E F +
Sbjct: 323 -IDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLN-VEFLSMFRM 380
Query: 209 R-KLKYLVMDEADRL-----------LDMEFGPVLDRILNIIPTQGR--TTYLFSATMTS 254
+ +V+DEA + L +L+R N P+ R + LFS
Sbjct: 381 SLSVSLVVVDEAHCVSECIYCLSLFCLSWLLRAILNRSHNFRPSYMRLKASMLFSELKAE 440
Query: 255 KIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMV---------VPGGLKNTFLIYLLNEF 305
I + + T ++ +S+ L+Q + + G + L+ L+
Sbjct: 441 CILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESP 500
Query: 306 IGK---STIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILV 362
K S IV+ + + + IS +A H L R + F + K ++V
Sbjct: 501 PYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVV 560
Query: 363 ATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGR 403
AT GLD V VI++ +P + Y+ +GR R GR
Sbjct: 561 ATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGR 601
>YIR002c [R] KOG0354 DEAD-box like helicase
Length = 993
Score = 53.1 bits (126), Expect = 9e-07
Identities = 43/154 (27%), Positives = 69/154 (43%), Gaps = 6/154 (3%)
Query: 315 RTKANA-ERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDI 373
RTK A +++ S A +NQ + + FK G+ ++LV T + GLDI
Sbjct: 524 RTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDI 583
Query: 374 PSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS---QYDLELILRIEDVLGKKL 430
VD++I YD I R+GRT R R GK + L S Y E + L +
Sbjct: 584 GEVDLIICYDTTSSPIKNIQRMGRTGRK-RDGKIVLLFSSNESYKFERAMEDYSTLQALI 642
Query: 431 PKENVD-KDAILALRDSVDKANGEVVMELNRRNK 463
K+ +D K + + + + E ++ +N N+
Sbjct: 643 SKQCIDYKKSDRIIPEDIIPECHETLITINDENE 676
>7300752 [R] KOG0354 DEAD-box like helicase
Length = 1383
Score = 53.1 bits (126), Expect = 9e-07
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 341 LNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDI-PVDSKSYIHRVGRTA 399
L Q Q+ + F++G ++LVAT + GLD+ V++++ +DI + +I R+GRT
Sbjct: 477 LTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTG 536
Query: 400 RAGRSGKSISLVS----QYDLELILRIEDVLGKKLPKENVDK 437
R ++G+ + LV+ Q L+ +L +D + KKL +V K
Sbjct: 537 RK-KNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVK 577
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,006,892
Number of Sequences: 60738
Number of extensions: 1051206
Number of successful extensions: 4744
Number of sequences better than 1.0e-05: 252
Number of HSP's better than 0.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3643
Number of HSP's gapped (non-prelim): 329
length of query: 487
length of database: 30,389,216
effective HSP length: 110
effective length of query: 377
effective length of database: 23,708,036
effective search space: 8937929572
effective search space used: 8937929572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)