ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3647 good J KOG2363 Translation, ribosomal structure and biogenesis Protein subunit of nuclear ribonuclease P (RNase P)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3647 1287448 1288302 285
(285 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR062c [J] KOG2363 Protein subunit of nuclear ribonuclease P (R... 317 2e-86
SPAC3A12.04c [J] KOG2363 Protein subunit of nuclear ribonuclease... 147 1e-35
Hs5454024 [J] KOG2363 Protein subunit of nuclear ribonuclease P ... 95 1e-19
At5g59980 [J] KOG2363 Protein subunit of nuclear ribonuclease P ... 92 6e-19
CE19505 [J] KOG2363 Protein subunit of nuclear ribonuclease P (R... 50 3e-06
>YHR062c [J] KOG2363 Protein subunit of nuclear ribonuclease P (RNase P)
Length = 293
Score = 317 bits (811), Expect = 2e-86
Identities = 165/292 (56%), Positives = 209/292 (71%), Gaps = 8/292 (2%)
Query: 1 MLVDLNVPWPQKDFATPPSTKEIXXXXXXXXXXXXXGYTHIALNFTVNQQDKFPKSINDM 60
MLVDLNVPWPQ +A +++ + GYTHIA+NFTVN +KFP + +
Sbjct: 1 MLVDLNVPWPQNSYADKVTSQAVNNLIKTLSTLHMLGYTHIAINFTVNHSEKFPNDVKLL 60
Query: 61 NPIDLSH-FDELVKSTGLKLYTRITIIIDDLSKGQPLTKISQAFDIVAALPVSEKAVTLV 119
NPID+ F EL+ TGLKLY+RIT+IIDD SKGQ L+KISQAFDIVAALP+SEK +TL
Sbjct: 61 NPIDIKRRFGELMDRTGLKLYSRITLIIDDPSKGQSLSKISQAFDIVAALPISEKGLTLS 120
Query: 120 TSSLDVDVLSFYYDKRLPTLLKHHMMGGCIKRGVKVEIVYANALRDIRTRRQFVSNVKSV 179
T++LD+D+L+F Y RLPT LKH + C+ RGVK+EIVY ALRD++ RRQFVSNV+SV
Sbjct: 121 TTNLDIDLLTFQYGSRLPTFLKHKSICSCVNRGVKLEIVYGYALRDVQARRQFVSNVRSV 180
Query: 180 IRTCRNRGIVVSSGATSPLECRNVIGVTSILNFIGLPNDKSRKSMGELASLVLLNGRLRN 239
IR+ R+RGIV+ SGA SPLECRN++GVTS++ +GLP+D+ K+MG+LASLVLLNGRLRN
Sbjct: 181 IRSSRSRGIVIGSGAMSPLECRNILGVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRN 240
Query: 240 KSYKQVICIG-----NEDVVN--EDFTQNSSFKIVKRKNPDTLESDDSKRTK 284
KS+KQ I G +DVVN + + K+VKR SKR K
Sbjct: 241 KSHKQTIVTGGGSGNGDDVVNDVQGIDDVQTIKVVKRSMDAEQLGHASKRHK 292
>SPAC3A12.04c [J] KOG2363 Protein subunit of nuclear ribonuclease P (RNase P)
Length = 235
Score = 147 bits (372), Expect = 1e-35
Identities = 86/249 (34%), Positives = 135/249 (53%), Gaps = 21/249 (8%)
Query: 1 MLVDLNVPWPQ---KDFATPPSTKEIXXXXXXXXXXXXXGYTHIALNFTVNQQDKFPKSI 57
M +DLNV WP KD + K + GYT IALN+ + K I
Sbjct: 1 MFIDLNVVWPTLGVKDLNLVKTVKTLERL----------GYTAIALNYQYD--GKLQNVI 48
Query: 58 NDMNPIDLSHFDELVKSTGLKLYTRITIIIDDLSKGQPLTKISQAFDIVAALPVSEKAVT 117
NPI EL +K+Y+RIT+ I+ + + + L+ +++ FDI+A P+ ++ +
Sbjct: 49 K--NPI----VKELYPEQKIKIYSRITLTIESMPQNKVLSNVTKEFDILAIRPIGDRLLQ 102
Query: 118 LVTSSLDVDVLSFYYDKRLPTLLKHHMMGGCIKRGVKVEIVYANALRDIRTRRQFVSNVK 177
S L+ D+LS + +RLP LKH MG + R + +EI Y++ LRD+ RR ++N
Sbjct: 103 QTCSDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDIGIEISYSSGLRDVSNRRNLITNAT 162
Query: 178 SVIRTCRNRGIVVSSGATSPLECRNVIGVTSILNFIGLPNDKSRKSMGELASLVLLNGRL 237
S++R R RGI+V+S +PLECR V ++ F L D++RKS+GE VLL+
Sbjct: 163 SLVRATRGRGIIVTSETRTPLECRAGFDVINLATFWDLKQDQARKSVGESCRSVLLHAET 222
Query: 238 RNKSYKQVI 246
R +Y+ ++
Sbjct: 223 RRDTYRSIL 231
>Hs5454024 [J] KOG2363 Protein subunit of nuclear ribonuclease P (RNase P)
Length = 268
Score = 94.7 bits (234), Expect = 1e-19
Identities = 59/211 (27%), Positives = 109/211 (50%), Gaps = 5/211 (2%)
Query: 37 GYTHIALNFTVNQQDKFPKSINDMNPIDLSHFDELV--KSTGLKLYTRITIIIDDLSKGQ 94
GY+ +A+N V+ ++K + + +L +V KS +K+ TR+TII+ D S
Sbjct: 29 GYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRPIKILTRLTIIVSDPSHCN 88
Query: 95 PLTKIS---QAFDIVAALPVSEKAVTLVTSSLDVDVLSFYYDKRLPTLLKHHMMGGCIKR 151
L S + +D+VA P +EK + + LDVD++ ++LP K + I R
Sbjct: 89 VLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITVTEKLPFYFKRPPINVAIDR 148
Query: 152 GVKVEIVYANALRDIRTRRQFVSNVKSVIRTCRNRGIVVSSGATSPLECRNVIGVTSILN 211
G+ E+VY+ A++D RR +S+ ++++ C+ + +++SS A PLE R V ++
Sbjct: 149 GLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPYDVANLGL 208
Query: 212 FIGLPNDKSRKSMGELASLVLLNGRLRNKSY 242
GL ++ ++ LL+G R ++
Sbjct: 209 LFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
>At5g59980 [J] KOG2363 Protein subunit of nuclear ribonuclease P (RNase P)
Length = 680
Score = 92.4 bits (228), Expect = 6e-19
Identities = 48/177 (27%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 73 KSTGLKLYTRITIIIDDLSKGQPLTK---ISQAFDIVAALPVSEKAVTLVTSSLDVDVLS 129
++T + YTR+T+ ++ ++ Q L I +++DI+A P+++ A +VD++S
Sbjct: 91 RTTPFRQYTRLTVHVESNAQCQSLNSGNPILKSYDIIAVRPMNQNAFDYACEKAEVDLIS 150
Query: 130 FYYDKRLPTLLKHHMMGGCIKRGVKVEIVYANALRDIRTRRQFVSNVKSVIRTCRNRGIV 189
+ ++ LKH M+ I+RG+ EI Y++ L D +TRRQ +SN K ++ R + ++
Sbjct: 151 IDFTDKMLFRLKHPMVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLI 210
Query: 190 VSSGATSPLECRNVIGVTSILNFIGLPNDKSRKSMGELASLVLLNGRLRNKSYKQVI 246
+SSGA S E R V +++ +GL +++R ++ + ++ + + +K+ +
Sbjct: 211 ISSGAPSVTELRGPNDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAV 267
>CE19505 [J] KOG2363 Protein subunit of nuclear ribonuclease P (RNase P)
Length = 393
Score = 50.4 bits (119), Expect = 3e-06
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 102 AFDIVAALPVSEKAVTLV---TSSLDVDVLSFYYDKRLPTLLKHHMMGGCIKRGVKVEIV 158
++DIVA P + + T D+ + ++R L +M GV EI
Sbjct: 169 SYDIVAVRPGEPSVLDTLSRKTELFDIITIDHLEEERRKWLSVSKVMDRIRNDGVFYEIA 228
Query: 159 YANALRDIRTRRQFVSNVKSVIRTCRNRGIVVSSGATSPLECRNVIGVTSILNFIGLPND 218
YA +L TR+ + N + +IR+ +++ I+ SSGA + L+ R+ + V ++ G+ N+
Sbjct: 229 YAESLMPA-TRKNTLFNGRVLIRSLKSKNIIFSSGAETMLDLRSPVDVMNMSLLWGVANN 287
Query: 219 KSRKSMGELASLVLLNGRLR 238
++RK + +LL R
Sbjct: 288 EARKMISGFPKNLLLQAECR 307
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,656,549
Number of Sequences: 60738
Number of extensions: 602402
Number of successful extensions: 1419
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 30,389,216
effective HSP length: 105
effective length of query: 180
effective length of database: 24,011,726
effective search space: 4322110680
effective search space used: 4322110680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)