ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII3692  suspect: LH   J     KOG4778  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein L28

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII3692 1301197  1301637 147  
         (147 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR462w [J] KOG4778 Mitochondrial ribosomal protein L28               174   4e-44
SPAC4F8.05c [J] KOG4778 Mitochondrial ribosomal protein L28            53   2e-07

>YDR462w [J] KOG4778 Mitochondrial ribosomal protein L28
          Length = 147

 Score =  174 bits (441), Expect = 4e-44
 Identities = 79/134 (58%), Positives = 108/134 (79%)

Query: 12  LKVVQPSLNFVRGKRTKSKGGLNPQAQRIITQLSVMSASRKQPKLLKLSREDLIKHDMIQ 71
           L+ V  +  F+R KRTKSK  L+P AQR++TQLSVMSASRKQPKLLKL+REDLIKH  I+
Sbjct: 14  LEQVSGTTVFIRNKRTKSKSSLSPLAQRVVTQLSVMSASRKQPKLLKLAREDLIKHQTIE 73

Query: 72  ACWAQYQRELREKRTNLLKLQYENIEEAMNLLEQVDPELYEMANAEESGKRVPLELRVPT 131
            CW+ YQ++ RE+R   L+LQY++IE +MNLL+++ P L+E ANA E GKR P+E++VPT
Sbjct: 74  KCWSIYQQQQRERRNLQLELQYKSIERSMNLLQELSPRLFEAANASEKGKRFPMEMKVPT 133

Query: 132 QYPPNNVWYYDYKK 145
            +PPN +W+Y+++K
Sbjct: 134 DFPPNTLWHYNFRK 147


>SPAC4F8.05c [J] KOG4778 Mitochondrial ribosomal protein L28
          Length = 118

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 26/84 (30%), Positives = 46/84 (53%)

Query: 52  KQPKLLKLSREDLIKHDMIQACWAQYQRELREKRTNLLKLQYENIEEAMNLLEQVDPELY 111
           K+ + LK++ +   KH++I   W  ++    ++R NLLK Q+  ++ A   L+     LY
Sbjct: 31  KKVRSLKMNPDMWEKHEVINRAWRIHEYRQEKQRENLLKNQFSAMKIACEELKHTSETLY 90

Query: 112 EMANAEESGKRVPLELRVPTQYPP 135
           + A ++   +R P+E R PT  PP
Sbjct: 91  KAAMSDSINRRFPVETRTPTDTPP 114


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,495
Number of Sequences: 60738
Number of extensions: 314283
Number of successful extensions: 999
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 30,389,216
effective HSP length: 96
effective length of query: 51
effective length of database: 24,558,368
effective search space: 1252476768
effective search space used: 1252476768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)