ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII3745.1  suspect: LH  O     KOG0907   Posttranslational modification, protein turnover, chaperones   Thioredoxin

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII3745.1 1320004 1319846 -53  
         (53 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39950 [O] KOG0907 Thioredoxin                                      28   1.8  

>At5g39950 [O] KOG0907 Thioredoxin
          Length = 133

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 2  DTTPIGTEQPPSRVLSKERSARQQI 26
          D T  GTE  PSRVL    SAR Q+
Sbjct: 14 DATAAGTESEPSRVLKFSSSARWQL 38


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.304    0.122    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,906,175
Number of Sequences: 60738
Number of extensions: 30913
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 1
length of query: 53
length of database: 30,389,216
effective HSP length: 29
effective length of query: 24
effective length of database: 28,627,814
effective search space: 687067536
effective search space used: 687067536
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)