ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3770 good J KOG0398 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L5/L7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII3770 1327926  1328792 289  
         (289 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR237w [J] KOG0398 Mitochondrial/chloroplast ribosomal protein ...   442   e-124
SPBC2F12.02c [J] KOG0398 Mitochondrial/chloroplast ribosomal pro...   157   1e-38
At4g01310 [J] KOG0398 Mitochondrial/chloroplast ribosomal protei...    89   1e-17

>YDR237w [J] KOG0398 Mitochondrial/chloroplast ribosomal protein L5/L7
          Length = 292

 Score =  442 bits (1138), Expect = e-124
 Identities = 208/283 (73%), Positives = 239/283 (83%)

Query: 5   RGFHSSSKVSKAACALVKPVHHLVKIDKSKLSPRFPELKYSKNDIRSPAFKPVVTHQDRV 64
           R F  S    K+AC+LVKPVHHLVKIDKSKLSPRFPELKY K+DIRSP FKP  TH DR+
Sbjct: 10  RSFSHSCVKPKSACSLVKPVHHLVKIDKSKLSPRFPELKYDKSDIRSPGFKPKDTHADRL 69

Query: 65  REHYYNTLQSDLLLINYSHKSQTKLGLKQREWDGSSPYHINREPRKPKGSSAQLPDIHPV 124
            +HY NTLQSDLLLINYSH +    GLKQR W G SPYH+NR P+ P+GS AQLPDIHP+
Sbjct: 70  NDHYLNTLQSDLLLINYSHNAAVVKGLKQRAWSGDSPYHLNRPPKNPRGSKAQLPDIHPI 129

Query: 125 TWKNIPDIESVVINCYVRDAKENQYLPISAALQLQQITGCKPKALFSRNDVPAWKVRRGT 184
            W NIP +ESVVINC+VR+A+ENQ L I+AALQLQQITGCKP  +FS+NDVP WK+R+G 
Sbjct: 130 KWSNIPGLESVVINCFVREARENQLLAITAALQLQQITGCKPHPIFSKNDVPTWKLRKGH 189

Query: 185 QMGAVITLKGRPMSQFLSTLTEIVLPRIREYKGISNKSGNRFGGLSFGMTSDEVRFFPEI 244
           QMGA + LKG+ MSQFLSTLTEIVLPRIREYKGISN+SGNRFGG+SFG+T+++++FFPEI
Sbjct: 190 QMGAKVELKGKEMSQFLSTLTEIVLPRIREYKGISNQSGNRFGGISFGLTAEDIKFFPEI 249

Query: 245 DANQDLWPVTFGMHININTTAQTDVQARTLVSGFGFPFNGSEK 287
           DANQD WP TFGMHININT+AQ D QARTL+SGF FPF G EK
Sbjct: 250 DANQDSWPKTFGMHININTSAQLDYQARTLLSGFQFPFFGEEK 292


>SPBC2F12.02c [J] KOG0398 Mitochondrial/chloroplast ribosomal protein L5/L7
          Length = 287

 Score =  157 bits (398), Expect = 1e-38
 Identities = 85/248 (34%), Positives = 141/248 (56%), Gaps = 9/248 (3%)

Query: 48  DIRSPAFKPVVTHQDRVREHYYNTLQSDLLLINYSHKSQTKLGLKQR-------EWDGSS 100
           D  S  F+P  T  +R++EH ++T+  D+L  +Y H   T L   +         W G +
Sbjct: 36  DPNSEYFRPGPTMLNRLQEHLHDTILPDVLAASYRHDIDTALSTDEHTQKDRLPRWIGDN 95

Query: 101 PYHINREPRKPKGSSAQLPDIHPVTWKNIPDIESVVINCYVRDAKENQYLPISAALQLQQ 160
           PY+ NR P+K +G+   LP    V  KN+P I  VV++   ++A  ++   +S  +  + 
Sbjct: 96  PYYKNRPPQKMRGNKPLLPVKESVNPKNLPSISKVVVSTMHKEALVDKTQLLSTMMAFRS 155

Query: 161 ITGCKPKALFSRNDVPAWKVRRGTQMGAVITLKGRPMSQFLSTLTEIVLPRIREYKGISN 220
           ITG +P+ +++R DV  WK+R G  +G  +TL G  M  FLS L+E+VLP++ ++KG+S 
Sbjct: 156 ITGLQPEIVYARKDVSPWKLRSGVPVGVKVTLTGESMYTFLSILSELVLPQLHDFKGLSP 215

Query: 221 KSGNRFGGLSFGMTSDEVRFFPEIDANQDLWPVTF-GMHININTTAQTDVQARTLVSGFG 279
            SG++ G +SFG+ S+ +  FP+I+A  +++P +  G ++NI T ++    AR  VS   
Sbjct: 216 TSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSSL- 274

Query: 280 FPFNGSEK 287
            PF    K
Sbjct: 275 IPFTDGNK 282


>At4g01310 [J] KOG0398 Mitochondrial/chloroplast ribosomal protein L5/L7
          Length = 262

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 4/154 (2%)

Query: 129 IPDIESVVINCYVRDAKENQYLPISAALQLQQITGCKPKALFSRNDVPAWKVRRGTQMGA 188
           +P ++ +V+NC + DA +N     +A   +  ITG KP    +R  +  +K+R    +G 
Sbjct: 83  VPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGI 142

Query: 189 VITLKGRPMSQFLSTLTEIVLPRIREYKGISNKSGNRFGGLSFGMTSDEVRFFPEIDANQ 248
            +TL+G  M  FL  L  + LPR R+++G+S  S +  G  S G+    V  FPEI    
Sbjct: 143 AVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGV--FPEI--RF 198

Query: 249 DLWPVTFGMHININTTAQTDVQARTLVSGFGFPF 282
           D    T GM + I+TTA++D + + L++  G PF
Sbjct: 199 DAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPF 232


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,380,455
Number of Sequences: 60738
Number of extensions: 743820
Number of successful extensions: 1583
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 3
length of query: 289
length of database: 30,389,216
effective HSP length: 105
effective length of query: 184
effective length of database: 24,011,726
effective search space: 4418157584
effective search space used: 4418157584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)