ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3791 good R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3791 1337984 1338994 337
(337 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL209c [R] KOG0118 FOG: RRM domain 378 e-105
SPAC3A12.11c [R] KOG0118 FOG: RRM domain 179 4e-45
At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 61 2e-09
At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 59 1e-08
>YDL209c [R] KOG0118 FOG: RRM domain
Length = 339
Score = 378 bits (970), Expect = e-105
Identities = 181/338 (53%), Positives = 240/338 (70%), Gaps = 7/338 (2%)
Query: 5 WKNRPARVQLQESDLPSSVPPQTGLAFNVWYNKWSQGQSGSTRFVTPYSLDPENDSGITK 64
W+++ A+VQ++ES+LPSS+P QTGL FN+WYNKWSQG +G+TRFV+P++L P+ SG T+
Sbjct: 4 WRDKSAKVQVKESELPSSIPAQTGLTFNIWYNKWSQGFAGNTRFVSPFALQPQLHSGKTR 63
Query: 65 GDKEGRIHFCLYFAKGMCCLGKNCRYLHHIPEPDDFARLALHSSALDCFGREKFADYRDD 124
GD +G++ FCL+FAKGMCCLG C YLHHIP+ +D +LAL + LDCFGREKFADYR+D
Sbjct: 64 GDNDGQLFFCLFFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYRED 123
Query: 125 MGGVGSFKKPNRVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRYVESKNCAF 184
MGG+GSF+K N+ LYVGGI GALN+K LKP QIE+R+++ F +LG++D +RYVESKNC F
Sbjct: 124 MGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGF 183
Query: 185 VKFKLQCNSEFTKEAMGNQTLLIPTDKEWDLRKEGTGLLVKWANEDPNPAVRKRELEEQT 244
VKFK Q N+EF KEAM NQTLL+P+DKEWD R+EGTGLLVKWANEDP+PA +KR EE
Sbjct: 184 VKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPAAQKRLQEELK 243
Query: 245 QETLKAIKQLV---ASTEGTVNQKRKVEEINEV--RDSQANSRERFSIRENAIIDKTILD 299
E+L + L+ ++ GT + E ++ S N ++R +N + ++
Sbjct: 244 LESLNMMVHLINNNTNSAGTEVNNKNNERLDRTFPEASVDNVKKRLLPLDNGMESDDFIE 303
Query: 300 KLKQRKXXXXXXXXXXXXXXSKPSSVLPLVTQYSSDED 337
KLK+ K K PL+ SSDED
Sbjct: 304 KLKKVKKNISRENISSKPSVGKLGG--PLLDYLSSDED 339
>SPAC3A12.11c [R] KOG0118 FOG: RRM domain
Length = 388
Score = 179 bits (455), Expect = 4e-45
Identities = 111/283 (39%), Positives = 146/283 (51%), Gaps = 49/283 (17%)
Query: 6 KNRPARVQLQESDLPSSVPPQTGLAFNVWYNKWSQGQ---------SGSTRFVTPYSLDP 56
K +PAR Q++ P Q G +N+WYNKWS G TR V
Sbjct: 46 KKQPARKQIETRPEYEMEPEQPGQVYNLWYNKWSGGMRQDPLKSQVKSETRCVI------ 99
Query: 57 ENDSGITKGDKEGRIHFCLYFAKGMCCLGKNCRYLHHIPEPDDFARLALHSSALDCFGRE 116
DSG TK DK FCLYFA+GMC G C YLH +P+ DF ++ +DCFGRE
Sbjct: 100 SRDSGYTKADKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTDF-----FNANVDCFGRE 154
Query: 117 KFADYRDDMGGVGSFKKPNRVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRY 176
K ADYRDDMGGVGSF + N LYVGGIT IE V F + G+++ +R
Sbjct: 155 KHADYRDDMGGVGSFLRQNYTLYVGGIT--------PTDDIEEIVSRHFAEWGDIERIRV 206
Query: 177 VESKNCAFVKFKLQCNSEFTKEAMGNQTLLIPTDKEWDLRKEGTGLLVKWANEDPNPAVR 236
+ S+ AF+ + + N++F KEAM +Q+L L V+WA DPNPA +
Sbjct: 207 LNSRGIAFITYLNEANAQFAKEAMAHQSL-----------DHDECLNVRWATTDPNPASQ 255
Query: 237 ---KRELEEQTQETLKAI--KQLVASTEGTV-----NQKRKVE 269
+R LEE+ +K + KQ + E T N+KRK+E
Sbjct: 256 ARNQRRLEERAANAVKKLLPKQFLLDLEETKNGKSGNRKRKLE 298
>At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 483
Score = 61.2 bits (147), Expect = 2e-09
Identities = 42/152 (27%), Positives = 69/152 (44%), Gaps = 30/152 (19%)
Query: 67 KEGRIHFCLYFAKGMCCLGKNCRYLHHIPEPDDFARLALHSS--------ALDCFGREKF 118
K R H C +F +G C G C Y H +PE + ++ + AL G+
Sbjct: 156 KRNRAHICSFFIRGECTRGDECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGK--- 212
Query: 119 ADYRDDMGGVGSFKKPN----RVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSV 174
G +G+ + P R LYVGG LN++ L E ++ +F GE++S+
Sbjct: 213 ------AGEMGTLESPEDQSIRTLYVGG----LNSRVL-----EQDIRDQFYAHGEIESI 257
Query: 175 RYVESKNCAFVKFKLQCNSEFTKEAMGNQTLL 206
R + K CAFV + + +E E + N+ ++
Sbjct: 258 RILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
>At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 481
Score = 58.5 bits (140), Expect = 1e-08
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 67 KEGRIHFCLYFAKGMCCLGKNCRYLHHIPEPDDFARLALHSSALDCFGREKFADYRDDM- 125
K R H C +F +G C G C Y H +PE + ++ + ++++ D +
Sbjct: 156 KRNRAHVCSFFIRGECTRGAECPYRHEMPETGELSQQNI---------KDRYYGVNDPVA 206
Query: 126 -------GGVGSFKKPN----RVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSV 174
G +G+ + P+ + LYVGG+ + +E ++ +F GE++S+
Sbjct: 207 MKLLGKAGEMGTLESPDDESIKTLYVGGLNSRI---------LEQDIRDQFYAHGEIESI 257
Query: 175 RYVESKNCAFVKFKLQCNSEFTKEAMGNQTLL 206
R + K CAFV + + +E + + N+ ++
Sbjct: 258 RILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,836,766
Number of Sequences: 60738
Number of extensions: 925955
Number of successful extensions: 2213
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2205
Number of HSP's gapped (non-prelim): 4
length of query: 337
length of database: 30,389,216
effective HSP length: 107
effective length of query: 230
effective length of database: 23,890,250
effective search space: 5494757500
effective search space used: 5494757500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)