ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3795 check: MH A KOG0333 RNA processing and modification U5 snRNP-like RNA helicase subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3795 1341058 1339442 -539
(539 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 494 e-139
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 319 6e-87
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 312 9e-85
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 312 9e-85
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 311 2e-84
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 311 2e-84
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 311 2e-84
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 291 2e-78
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 227 4e-59
At1g20920 [A] KOG0334 RNA helicase 224 3e-58
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 222 1e-57
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 221 2e-57
7296646 [A] KOG0331 ATP-dependent RNA helicase 218 2e-56
YPL119c [A] KOG0335 ATP-dependent RNA helicase 217 4e-56
SPCC10H11.01 [A] KOG0334 RNA helicase 217 4e-56
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 216 5e-56
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 215 2e-55
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 211 3e-54
Hs7662318 [A] KOG0334 RNA helicase 210 4e-54
7293060 [A] KOG0334 RNA helicase 210 4e-54
YOR204w [A] KOG0335 ATP-dependent RNA helicase 208 1e-53
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 208 1e-53
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 207 4e-53
7295314 [A] KOG0331 ATP-dependent RNA helicase 207 4e-53
7290853 [A] KOG0331 ATP-dependent RNA helicase 207 4e-53
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 206 6e-53
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 206 7e-53
7299061 [A] KOG0335 ATP-dependent RNA helicase 206 9e-53
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 205 2e-52
YNL112w [A] KOG0331 ATP-dependent RNA helicase 204 2e-52
7296891 [A] KOG0341 DEAD-box protein abstrakt 204 4e-52
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 203 5e-52
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 203 5e-52
7298204 [A] KOG0335 ATP-dependent RNA helicase 203 6e-52
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 202 1e-51
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 202 1e-51
CE28031 [A] KOG0334 RNA helicase 201 3e-51
CE27427 [A] KOG0334 RNA helicase 201 3e-51
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 200 4e-51
7298989 [A] KOG0336 ATP-dependent RNA helicase 197 3e-50
YGL078c [A] KOG0331 ATP-dependent RNA helicase 197 4e-50
CE18785 [A] KOG0331 ATP-dependent RNA helicase 196 6e-50
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 196 7e-50
CE23832 [A] KOG0341 DEAD-box protein abstrakt 196 1e-49
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 195 1e-49
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 194 2e-49
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 194 4e-49
At3g09620 [A] KOG0334 RNA helicase 192 1e-48
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 192 1e-48
7294797 [A] KOG0339 ATP-dependent RNA helicase 191 2e-48
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 190 4e-48
YBR237w [A] KOG0334 RNA helicase 190 5e-48
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 189 9e-48
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 188 2e-47
CE22474 [A] KOG0336 ATP-dependent RNA helicase 186 1e-46
CE28369 [A] KOG0335 ATP-dependent RNA helicase 184 2e-46
CE24451 [A] KOG0335 ATP-dependent RNA helicase 184 2e-46
CE17559 [A] KOG0339 ATP-dependent RNA helicase 184 4e-46
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 178 2e-44
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 176 6e-44
YHR065c [A] KOG0330 ATP-dependent RNA helicase 175 2e-43
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 175 2e-43
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 174 4e-43
YLL008w [A] KOG0338 ATP-dependent RNA helicase 173 7e-43
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 170 4e-42
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 170 6e-42
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 170 6e-42
7293941 [A] KOG0344 ATP-dependent RNA helicase 169 1e-41
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 169 1e-41
CE25121 [A] KOG0335 ATP-dependent RNA helicase 166 6e-41
7304081 [A] KOG0338 ATP-dependent RNA helicase 165 1e-40
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 164 2e-40
CE09012 [A] KOG0335 ATP-dependent RNA helicase 164 2e-40
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 164 3e-40
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 164 4e-40
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 161 2e-39
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 161 2e-39
CE07736 [A] KOG0335 ATP-dependent RNA helicase 161 2e-39
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 161 3e-39
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 161 3e-39
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 161 3e-39
YHR169w [A] KOG0340 ATP-dependent RNA helicase 160 3e-39
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 160 3e-39
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 160 6e-39
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 159 8e-39
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 159 1e-38
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 159 1e-38
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 159 1e-38
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 159 1e-38
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 158 2e-38
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 157 5e-38
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 157 5e-38
YGL171w [A] KOG0344 ATP-dependent RNA helicase 156 9e-38
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 156 9e-38
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 155 1e-37
CE11402 [A] KOG0334 RNA helicase 155 1e-37
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 155 1e-37
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 155 1e-37
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 154 3e-37
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 153 6e-37
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 153 7e-37
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 152 9e-37
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 152 1e-36
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 152 2e-36
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 152 2e-36
YDL031w [A] KOG0337 ATP-dependent RNA helicase 152 2e-36
At5g54910 [A] KOG0343 RNA Helicase 151 2e-36
CE27030 [A] KOG0338 ATP-dependent RNA helicase 150 4e-36
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 150 4e-36
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 150 5e-36
CE25231 [A] KOG0343 RNA Helicase 150 6e-36
7293369 [A] KOG0343 RNA Helicase 150 6e-36
SPAC1093.05 [A] KOG0343 RNA Helicase 149 1e-35
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 149 1e-35
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 149 1e-35
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 148 2e-35
CE00337 [A] KOG0330 ATP-dependent RNA helicase 148 2e-35
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 148 2e-35
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 148 2e-35
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 147 4e-35
YDL160c [A] KOG0326 ATP-dependent RNA helicase 147 5e-35
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 146 7e-35
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 146 7e-35
YJL033w [A] KOG0343 RNA Helicase 146 9e-35
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 1e-34
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 145 1e-34
7298752 [A] KOG0330 ATP-dependent RNA helicase 145 1e-34
CE23814 [A] KOG0340 ATP-dependent RNA helicase 145 2e-34
CE29052 [A] KOG0335 ATP-dependent RNA helicase 145 2e-34
CE27553 [A] KOG0337 ATP-dependent RNA helicase 145 2e-34
CE11190 [A] KOG0347 RNA helicase 144 4e-34
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 4e-34
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 144 4e-34
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 4e-34
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 143 7e-34
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 142 1e-33
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 142 1e-33
Hs13514831 [A] KOG0343 RNA Helicase 140 4e-33
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 140 6e-33
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 139 1e-32
YOR046c [A] KOG0332 ATP-dependent RNA helicase 139 1e-32
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 139 1e-32
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 136 7e-32
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 135 2e-31
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 135 2e-31
YBR142w [A] KOG0347 RNA helicase 135 2e-31
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 135 2e-31
CE06239 [A] KOG0344 ATP-dependent RNA helicase 134 3e-31
SPBC4F6.07c [A] KOG0347 RNA helicase 134 5e-31
CE00839 [A] KOG0326 ATP-dependent RNA helicase 132 1e-30
YDL084w [A] KOG0329 ATP-dependent RNA helicase 132 1e-30
YKR024c [A] KOG0348 ATP-dependent RNA helicase 131 3e-30
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 131 3e-30
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 130 4e-30
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 130 4e-30
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 130 4e-30
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 130 4e-30
7296990 [A] KOG0329 ATP-dependent RNA helicase 130 4e-30
CE03025 [A] KOG0329 ATP-dependent RNA helicase 130 5e-30
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 130 5e-30
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 130 7e-30
YFL002c [A] KOG0345 ATP-dependent RNA helicase 129 1e-29
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 129 1e-29
7293348 [A] KOG0348 ATP-dependent RNA helicase 129 1e-29
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 128 2e-29
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 128 2e-29
7299006 [A] KOG0345 ATP-dependent RNA helicase 128 2e-29
7303950 [A] KOG0340 ATP-dependent RNA helicase 127 3e-29
At4g34910 [A] KOG0346 RNA helicase 127 6e-29
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 126 9e-29
ECU10g1680 [A] KOG0343 RNA Helicase 125 2e-28
7297629 [A] KOG0326 ATP-dependent RNA helicase 124 3e-28
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 2e-27
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 2e-27
CE18221 [A] KOG0332 ATP-dependent RNA helicase 120 4e-27
CE18220 [A] KOG0332 ATP-dependent RNA helicase 120 4e-27
CE18219 [A] KOG0332 ATP-dependent RNA helicase 120 4e-27
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 120 4e-27
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 119 9e-27
7296165 [A] KOG0330 ATP-dependent RNA helicase 118 2e-26
SPCC1494.06c [A] KOG0346 RNA helicase 118 3e-26
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 118 3e-26
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 117 3e-26
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 117 6e-26
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 117 6e-26
CE29051 [A] KOG0335 ATP-dependent RNA helicase 117 6e-26
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 117 6e-26
Hs14251212 [K] KOG4284 DEAD box protein 115 1e-25
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 115 1e-25
7302399 [A] KOG0347 RNA helicase 115 2e-25
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 113 8e-25
Hs9506931 [A] KOG0346 RNA helicase 112 1e-24
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 111 2e-24
YLR276c [A] KOG0346 RNA helicase 111 3e-24
CE27728 [A] KOG0346 RNA helicase 111 3e-24
At3g16840 [A] KOG0347 RNA helicase 111 3e-24
CE26264 [A] KOG0335 ATP-dependent RNA helicase 110 4e-24
7294824 [K] KOG4284 DEAD box protein 110 5e-24
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 108 3e-23
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 107 3e-23
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 107 5e-23
7290730 [A] KOG0331 ATP-dependent RNA helicase 107 6e-23
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 106 1e-22
CE27336 [A] KOG0334 RNA helicase 105 2e-22
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 105 2e-22
CE03821 [A] KOG0345 ATP-dependent RNA helicase 102 1e-21
7295505 [A] KOG0346 RNA helicase 102 2e-21
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 99 1e-20
Hs9966805 [A] KOG0347 RNA helicase 98 3e-20
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 97 5e-20
CE28485 [K] KOG4284 DEAD box protein 97 5e-20
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 97 6e-20
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 96 1e-19
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 94 5e-19
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 92 3e-18
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 91 3e-18
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 91 3e-18
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 90 8e-18
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 87 5e-17
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 81 3e-15
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 79 2e-14
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 78 4e-14
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 77 7e-14
CE28975 [A] KOG0335 ATP-dependent RNA helicase 77 7e-14
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 77 9e-14
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 74 7e-13
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 73 1e-12
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 73 1e-12
CE06825 [A] KOG0335 ATP-dependent RNA helicase 72 2e-12
CE15167 [A] KOG0335 ATP-dependent RNA helicase 71 5e-12
CE27320 [A] KOG0335 ATP-dependent RNA helicase 67 5e-11
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 66 1e-10
Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FA... 60 1e-08
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 59 2e-08
YGL064c [A] KOG0335 ATP-dependent RNA helicase 56 2e-07
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 54 6e-07
CE13130_2 [L] KOG0351 ATP-dependent DNA helicase 52 2e-06
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 51 5e-06
CE23511 [R] KOG0354 DEAD-box like helicase 51 5e-06
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 494 bits (1273), Expect = e-139
Identities = 282/588 (47%), Positives = 358/588 (59%), Gaps = 51/588 (8%)
Query: 1 MLRPVSIDDLISDTVPAK-----------KPRFLIKKRTFPQPEEEEASKALSHT----- 44
M RP+ + LI+ K KPRFL K+ Q +E ++L+ T
Sbjct: 1 MARPIDVSQLIAGINKKKGLDENTSGKISKPRFLNKQERSKQERLKENEESLTPTQSDSA 60
Query: 45 ------VIKRKDNYRNLDEDELYEEQVSN---------EPDDLL-----FLARKSADLLK 84
V R D++ N D+ N E +D L ++ ++ DLL
Sbjct: 61 KVEIKKVNSRDDSFFNETNDKKRNPSKQNGSKFHFSWNESEDTLSGYDPIVSTRAIDLLW 120
Query: 85 KRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLI 144
K + + +Y+GKHW+EK EM+ RDWRIL ED+ I +KGGTVE PLRNW EL +I
Sbjct: 121 KGKTPKNAAESSYMGKHWTEKSLHEMNERDWRILKEDYAIVTKGGTVENPLRNWEELNII 180
Query: 145 PEDLLNIITNDLHYNEPTSIQRSTIPNVINN---RDFIGVASTGSGKTLAFLLPILIKLH 201
P DLL +I +L + PT IQR TIPNV N RDF+GVASTGSGKTLAF++PILIK+
Sbjct: 181 PRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMS 240
Query: 202 GIPPLN-SITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRP----CNIVSIVGGHSL 256
PP S+ DGP AL+LAPTREL QQIQ E Q +TK+W + C ++SIVGGHSL
Sbjct: 241 RSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSL 300
Query: 257 EEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILA 316
EEIS +L +GCDILVATPGR KQV TLVLDEADKMID GFEDQ+T IL
Sbjct: 301 EEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILT 360
Query: 317 KTE----TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPD 371
K + + NRQT+MFTAT +P IEK+A GY++KP Y T+G E S+P I+Q+V Y +
Sbjct: 361 KVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADN 420
Query: 372 EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKL-REARFRATTLHGSKSQEQREHS 430
+E+K K L K + Y PIIIFINYK+TADWL +K +E + T LHGSKSQEQREHS
Sbjct: 421 DEDKFKKL-KPIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHS 479
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXX 490
L L R KV I+IAT+VA RG+DIPNVSLVVN Q K D ++HR+
Sbjct: 480 LQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVS 539
Query: 491 FLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMSKYNVDKSSYKPII 538
F++ ED S + +L+ YV+K+D N S+ +KYNV K II
Sbjct: 540 FVSAAEDESLIRELYKYVRKHDPLNSNIFSEAVKNKYNVGKQLSNEII 587
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 319 bits (818), Expect = 6e-87
Identities = 176/414 (42%), Positives = 242/414 (57%), Gaps = 23/414 (5%)
Query: 102 WSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEP 161
W EK E M RDWRIL ED+NIS KG + PLRNW E L P ++L ++ ++Y EP
Sbjct: 215 WREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGL-PSEMLKVLKK-VNYKEP 272
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLA 221
+SIQR+ IP ++ +D IG+A TGSGKT AF++P++I + +PPL H GP A+VLA
Sbjct: 273 SSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLA 332
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXX 281
PTRELAQQIQ EG + C VS+VGGH+ EE S + G I+VATPGR
Sbjct: 333 PTRELAQQIQVEGNKFAEPLGFRC--VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL 390
Query: 282 XXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAK-----------------TETISNR 324
Q +V+DEAD+M+D GFED + IL+ + S R
Sbjct: 391 ERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRR 450
Query: 325 QTMMFTATFSPTIEKVANGYLKKPSYVTVGG-EESKPKIKQIVRYVPDEEEKLKILVKDF 383
QT+MF+AT P + +A YL +P +T+G ++ +++Q V + D+ +K + + +
Sbjct: 451 QTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEIL 510
Query: 384 LPN-YKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDIL 442
N + PIIIF+N KR + + +L + A TLHGSKSQEQRE ++ LRN DIL
Sbjct: 511 ESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADIL 570
Query: 443 IATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+ATD+AGRGIDIPNVSLV+N KS + + HR+ FL E+
Sbjct: 571 VATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPED 624
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 312 bits (799), Expect = 9e-85
Identities = 188/477 (39%), Positives = 263/477 (54%), Gaps = 46/477 (9%)
Query: 51 NYRNLDEDELYEEQVSN-----EPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEK 105
N + +++ Y+E + N E + + K KK ++D +HW K
Sbjct: 220 NAQKKEKNSFYQEMMENRRTVDEKEQEMHRLEKELKKEKKVAHDD---------RHWRMK 270
Query: 106 KYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQ 165
+ EMS RDWRI EDFNIS KGG V +PLRNW E P+++ + ++ Y EPT IQ
Sbjct: 271 ELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGF-PDEVYQAV-KEIGYLEPTPIQ 328
Query: 166 RSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHD-GPLALVLAPTR 224
R IP + NRD IGVA TGSGKT AFLLP+L+ + +P + D GP A+++APTR
Sbjct: 329 RQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
Query: 225 ELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXX 284
ELAQQI+ E KL VS++GG S E+ LR G ++++ATPGR
Sbjct: 389 ELAQQIEEETNKFGKLLG--IKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENR 446
Query: 285 XXXXKQVNTLVLDEADKMIDFGFEDQLTTILA---------KTETISN------------ 323
Q ++LDEAD+M+D GFE + +L T+ N
Sbjct: 447 YLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTRE 506
Query: 324 --RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKP--KIKQIVRYVPDEEEKLKIL 379
RQT+MFTAT S IE++A YL++P+ V +G KP +++Q+V VP E+ K K L
Sbjct: 507 KYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA-GKPTERVEQVVYMVP-EDRKRKKL 564
Query: 380 VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKV 439
V+ ++ PIIIF+N K+ AD L L + F+ T LHG K Q+QRE++L L+ G
Sbjct: 565 VEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTS 624
Query: 440 DILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
DIL+ATDVAGRGID+ +VSLV+N KS + + HR+ FLT ++
Sbjct: 625 DILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDD 681
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 312 bits (799), Expect = 9e-85
Identities = 188/477 (39%), Positives = 263/477 (54%), Gaps = 46/477 (9%)
Query: 51 NYRNLDEDELYEEQVSN-----EPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEK 105
N + +++ Y+E + N E + + K KK ++D +HW K
Sbjct: 220 NAQKKEKNSFYQEMMENRRTVDEKEQEMHRLEKELKKEKKVAHDD---------RHWRMK 270
Query: 106 KYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQ 165
+ EMS RDWRI EDFNIS KGG V +PLRNW E P+++ + ++ Y EPT IQ
Sbjct: 271 ELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGF-PDEVYQAV-KEIGYLEPTPIQ 328
Query: 166 RSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHD-GPLALVLAPTR 224
R IP + NRD IGVA TGSGKT AFLLP+L+ + +P + D GP A+++APTR
Sbjct: 329 RQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
Query: 225 ELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXX 284
ELAQQI+ E KL VS++GG S E+ LR G ++++ATPGR
Sbjct: 389 ELAQQIEEETNKFGKLLG--IKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENR 446
Query: 285 XXXXKQVNTLVLDEADKMIDFGFEDQLTTILA---------KTETISN------------ 323
Q ++LDEAD+M+D GFE + +L T+ N
Sbjct: 447 YLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTRE 506
Query: 324 --RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKP--KIKQIVRYVPDEEEKLKIL 379
RQT+MFTAT S IE++A YL++P+ V +G KP +++Q+V VP E+ K K L
Sbjct: 507 KYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA-GKPTERVEQVVYMVP-EDRKRKKL 564
Query: 380 VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKV 439
V+ ++ PIIIF+N K+ AD L L + F+ T LHG K Q+QRE++L L+ G
Sbjct: 565 VEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTS 624
Query: 440 DILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
DIL+ATDVAGRGID+ +VSLV+N KS + + HR+ FLT ++
Sbjct: 625 DILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDD 681
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 311 bits (797), Expect = 2e-84
Identities = 187/449 (41%), Positives = 266/449 (58%), Gaps = 40/449 (8%)
Query: 77 RKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLR 136
++ A L K R+ E + D+ +HWS+KK +EM+ RDWRI ED++I++KGG + P+R
Sbjct: 335 QEEARLRKLRKKEAKQRWDD---RHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Query: 137 NWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPI 196
+W + L P +L +I + Y EPT IQR IP + NRD IGVA TGSGKT AFL+P+
Sbjct: 392 SWKDSSL-PPHILEVI-DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 197 LIKLHGIPPLNSITKHD-GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI--VSIVGG 253
L+ + +P ++ I + D GP A++LAPTRELAQQI+ E T + +P I V+++GG
Sbjct: 450 LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEE----TIKFGKPLGIRTVAVIGG 505
Query: 254 HSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTT 313
S E+ LR GC+I++ATPGR + +VLDEAD+MID GFE +
Sbjct: 506 ISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQK 565
Query: 314 ILA-------KTET---------ISN--------RQTMMFTATFSPTIEKVANGYLKKPS 349
IL K +T ++N RQT+MFTAT P +E++A YL++P+
Sbjct: 566 ILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPA 625
Query: 350 YVTVGGEESKP--KIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDK 407
V +G KP +++Q V ++ E EK K L+ + PIIIF+N K+ D L
Sbjct: 626 VVYIGSA-GKPHERVEQKV-FLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
L + + A TLHG K QEQRE +LS L+ G DIL+ATDVAGRGIDI +VS+VVN K
Sbjct: 684 LEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK 743
Query: 468 SFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+ + ++HR+ FLT+E+
Sbjct: 744 NIEDYIHRIGRTGRAGKSGVAITFLTKED 772
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 311 bits (797), Expect = 2e-84
Identities = 187/449 (41%), Positives = 266/449 (58%), Gaps = 40/449 (8%)
Query: 77 RKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLR 136
++ A L K R+ E + D+ +HWS+KK +EM+ RDWRI ED++I++KGG + P+R
Sbjct: 335 QEEARLRKLRKKEAKQRWDD---RHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIR 391
Query: 137 NWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPI 196
+W + L P +L +I + Y EPT IQR IP + NRD IGVA TGSGKT AFL+P+
Sbjct: 392 SWKDSSL-PPHILEVI-DKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 197 LIKLHGIPPLNSITKHD-GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI--VSIVGG 253
L+ + +P ++ I + D GP A++LAPTRELAQQI+ E T + +P I V+++GG
Sbjct: 450 LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEE----TIKFGKPLGIRTVAVIGG 505
Query: 254 HSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTT 313
S E+ LR GC+I++ATPGR + +VLDEAD+MID GFE +
Sbjct: 506 ISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQK 565
Query: 314 ILA-------KTET---------ISN--------RQTMMFTATFSPTIEKVANGYLKKPS 349
IL K +T ++N RQT+MFTAT P +E++A YL++P+
Sbjct: 566 ILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPA 625
Query: 350 YVTVGGEESKP--KIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDK 407
V +G KP +++Q V ++ E EK K L+ + PIIIF+N K+ D L
Sbjct: 626 VVYIGSA-GKPHERVEQKV-FLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
L + + A TLHG K QEQRE +LS L+ G DIL+ATDVAGRGIDI +VS+VVN K
Sbjct: 684 LEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK 743
Query: 468 SFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+ + ++HR+ FLT+E+
Sbjct: 744 NIEDYIHRIGRTGRAGKSGVAITFLTKED 772
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 311 bits (797), Expect = 2e-84
Identities = 189/471 (40%), Positives = 270/471 (57%), Gaps = 43/471 (9%)
Query: 39 KALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSAD-------LLKKRQNEDE 91
K H + N +D E Q S DLL R A+ L K ++ ED+
Sbjct: 294 KERHHVQFFGRGNVAGIDIKEQKRTQ-SKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDK 352
Query: 92 SIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNI 151
D+ +HWSEK+ +EM+ RDWRI ED+N++ KGG + P+R+W+E P+++++I
Sbjct: 353 QKWDD---RHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGF-PKEIIDI 408
Query: 152 ITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITK 211
I + + Y EPT IQR IP + NRD IGVA TGSGKTLAFL+P+L + +P + +
Sbjct: 409 I-DKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLED 467
Query: 212 HD-GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI--VSIVGGHSLEEISANLRDGCD 268
D GP A+++APTRELAQQI+ E T + +P I V +VGG S EE LR GC+
Sbjct: 468 VDQGPYAIIMAPTRELAQQIEEE----TTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE 523
Query: 269 ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILA------------ 316
I++ATPGR Q +VLDEAD+MID GFE + IL
Sbjct: 524 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 583
Query: 317 ----KTETISN-------RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQI 365
+T+ + N RQT+MFTAT P +E++A YL++P+ V +G + +
Sbjct: 584 EAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQ 643
Query: 366 VRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQE 425
+ Y+ E +K K L++ P+IIF+N K+ AD L L + + + TLHG K QE
Sbjct: 644 IVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQE 703
Query: 426 QREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
QRE++L+ L++G DIL+ATDVAGRGIDI +VSLV+N K+ + + HR+
Sbjct: 704 QREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 754
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 291 bits (745), Expect = 2e-78
Identities = 168/414 (40%), Positives = 231/414 (55%), Gaps = 19/414 (4%)
Query: 95 DNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITN 154
D + +HWS+K+ EEM+ RDWRI EDFNIS KG + +P+R+W E KL E LL +
Sbjct: 272 DMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSE-LLKAVER 330
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
Y +P+ IQ + IP + RD IG+A TGSGKT AF+LP+L + +PP++ + +G
Sbjct: 331 -AGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEG 389
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
P A+V+APTRELAQQI+ E ++ + SIVGG S+EE + GC+I++ATP
Sbjct: 390 PYAVVMAPTRELAQQIEEE--TVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 275 GRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTIL-------AKTETISN---- 323
GR Q N +VLDEAD+MID GFE Q+ +L K E
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDE 507
Query: 324 ----RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKIL 379
R T MF+AT P +E++A YL+ P VT+G + + E EK L
Sbjct: 508 KKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRL 567
Query: 380 VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKV 439
K + I+F+N K+ D + L +A +R TTLHG KSQEQRE SL R +
Sbjct: 568 QKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRY 627
Query: 440 DILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLT 493
++L+ATDV GRGIDIP+V+ V+N PK + + HR+ FLT
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 227 bits (578), Expect = 4e-59
Identities = 138/353 (39%), Positives = 201/353 (56%), Gaps = 14/353 (3%)
Query: 127 KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGS 186
KG V P++ + E E + +++ ++EPT+IQ P ++ RD +G+A TGS
Sbjct: 78 KGTNVPHPIQKFEEAGFSSEVVSSLVEKG--FSEPTAIQGQGWPMALSGRDMVGIAQTGS 135
Query: 187 GKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
GKTL+F+LP L+ PL + DGP+ LVLAPTREL QI+ ++
Sbjct: 136 GKTLSFILPALVHAKDQQPLR---RGDGPIVLVLAPTRELVMQIKKVVDEFCGMFN--LR 190
Query: 247 IVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFG 306
++ GG S + L +G ++++ATPGR +V LVLDEAD+M+D G
Sbjct: 191 STAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMG 250
Query: 307 FEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKP--KIKQ 364
FE QL I+ KT +NRQT+M++AT+ + +A Y+ + V VG EE K KIKQ
Sbjct: 251 FEPQLRKIIPKTN--ANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQ 308
Query: 365 IVRYVPDEEEKLKILVKDFLPNYKAP-IIIFINYKRTADWLFDKLREARFRATTLHGSKS 423
IV E++ K++ L N+K +I+F N KRT D L L + + A LHG KS
Sbjct: 309 IVEVCSGREKEDKLI--GVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKS 366
Query: 424 QEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
Q R+ L R+G+ ILIAT+VAGRG+D+ +V LV+N FP S + +VHR+
Sbjct: 367 QNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRI 419
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 224 bits (570), Expect = 3e-58
Identities = 153/471 (32%), Positives = 247/471 (51%), Gaps = 28/471 (5%)
Query: 38 SKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNY 97
+KAL +I+ +D+ + E + ++ S + DD F+ R +KK + E S+VD+
Sbjct: 430 NKALGR-IIQGEDSDSDYSEPK-NDDDPSLDEDDEEFMKR-----VKKTKAEKLSLVDHS 482
Query: 98 LGKHWSEKKYEEMSTRDW-RILSEDFNISSK-------GGTVEKPLRNWHELKLIPEDLL 149
++ +K + +D R+ E+ N K G V +P++ WH+ L + L
Sbjct: 483 KIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILD 542
Query: 150 NIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI 209
+ L+Y +P IQ +P +++ RD IGVA TGSGKTL F+LP+L + PP+ +
Sbjct: 543 TM--KKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA- 599
Query: 210 TKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDI 269
DGP+ LV+APTREL QQI + + +K C V + GG + + + L+ G +I
Sbjct: 600 --GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC--VPVYGGSGVAQQISELKRGTEI 655
Query: 270 LVATPGRXXX---XXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQT 326
+V TPGR ++V LV+DEAD+M D GFE Q+T I+ RQT
Sbjct: 656 VVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRP--ERQT 713
Query: 327 MMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLP 385
++F+ATF +E +A L KP + VGG K I Q+V P+ + L++L
Sbjct: 714 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 773
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+ K I++F+ + D L+ + ++ + +LHG K Q RE ++S +N ++LIAT
Sbjct: 774 SEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 833
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
VA RG+D+ + LVVN P ++ +VHRV F++E++
Sbjct: 834 SVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 222 bits (566), Expect = 1e-57
Identities = 142/423 (33%), Positives = 224/423 (52%), Gaps = 23/423 (5%)
Query: 85 KRQNEDESIVDNYLGK--HWSEKKYEE------MSTRDWRILSEDFNISSKGGTVEKPLR 136
KR+ + S+ G H+ + Y E M+ +D + + +IS +G V KP++
Sbjct: 79 KRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 138
Query: 137 NWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPI 196
+ + P+++L I L + EPT IQ P + RD IG+A TGSGKTLA+LLP
Sbjct: 139 MFQDANF-PDNILEAIAK-LGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 196
Query: 197 LIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSL 256
L+ + P L + DGP+ L+LAPTRELA QIQ E + + I GG
Sbjct: 197 LVHVSAQPRLG---QDDGPIVLILAPTRELAVQIQEESRKFGL--RSGVRSTCIYGGAPK 251
Query: 257 EEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILA 316
+LR G +I++ATPGR K+V LVLDEAD+M+D GFE Q+ I++
Sbjct: 252 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 311
Query: 317 KTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK--IKQIVRYVPDEEE 374
+ +RQT++++AT+ +E +A +L+ P +G + K I Q++ VP E+
Sbjct: 312 QIRP--DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEK 369
Query: 375 --KLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLS 432
+L L+K + K I+IF+ KR D + +LR + A +HG K+Q +R+ L+
Sbjct: 370 YNRLLTLLKQLMDGSK--ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLA 427
Query: 433 LLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFL 492
++G+ I+ ATDVA RG+D+ ++ VVN FP + + ++HR+ F
Sbjct: 428 EFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 487
Query: 493 TEE 495
T +
Sbjct: 488 THD 490
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 221 bits (564), Expect = 2e-57
Identities = 143/420 (34%), Positives = 225/420 (53%), Gaps = 22/420 (5%)
Query: 82 LLKKRQNEDE--SIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWH 139
L+KK+ N DE N+ +H + +R E I+ +G KP+ N++
Sbjct: 41 LVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE---ITVRGHNCPKPVLNFY 97
Query: 140 ELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIK 199
E P +++++I ++ EPT+IQ P ++ D +GVA TGSGKTL++LLP ++
Sbjct: 98 EANF-PANVMDVIARQ-NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 200 LHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVS--IVGGHSLE 257
++ P L + DGP+ LVLAPTRELAQQ+Q + + R C + S I GG
Sbjct: 156 INHQPFLE---RGDGPICLVLAPTRELAQQVQQ----VAAEYCRACRLKSTCIYGGAPKG 208
Query: 258 EISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAK 317
+L G +I +ATPGR ++ LVLDEAD+M+D GFE Q+ I+ +
Sbjct: 209 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 268
Query: 318 TETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEE-- 373
+RQT+M++AT+ + ++A +LK ++ +G E + I QIV D E
Sbjct: 269 IRP--DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD 326
Query: 374 EKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSL 433
EKL L+++ + + I+F+ KR D L K+R + A +HG KSQ++R+ L+
Sbjct: 327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386
Query: 434 LRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLT 493
++GK ILIATDVA RG+D+ +V V+N +P S + ++HR+ F T
Sbjct: 387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 218 bits (555), Expect = 2e-56
Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 19/382 (4%)
Query: 129 GTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGK 188
G V P++++ E+ L P+ ++ I Y PT+IQ P ++ +F+G+A TGSGK
Sbjct: 132 GQVPNPIQDFSEVHL-PDYVMKEIRRQ-GYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGK 189
Query: 189 TLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSI--TKLWKRPCN 246
TL ++LP ++ ++ PL + DGP+ALVLAPTRELAQQIQ + + C
Sbjct: 190 TLGYILPAIVHINNQQPLQ---RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTC- 245
Query: 247 IVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFG 306
+ GG +L+ GC+I++ATPGR K+ LVLDEAD+M+D G
Sbjct: 246 ---VFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMG 302
Query: 307 FEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQ 364
FE Q+ I+++ +RQT+M++AT+ ++++A +L + +G E + I+Q
Sbjct: 303 FEPQIRKIVSQIRP--DRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQ 360
Query: 365 IVRYVPD--EEEKLKILVKDFLPNYKAP--IIIFINYKRTADWLFDKLREARFRATTLHG 420
+V + +EEKLK L+ D ++P IIIF+ KR D L +R R +HG
Sbjct: 361 VVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHG 420
Query: 421 SKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXX 480
KSQ +R+ L R+GK +IL+ATDVA RG+D+ + V+N +P++ + ++HR+
Sbjct: 421 DKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTG 480
Query: 481 XXXXXXXXXXFLTEEEDHSAMA 502
F T+ A A
Sbjct: 481 RSNTKGTSFAFFTKNNAKQAKA 502
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 217 bits (552), Expect = 4e-56
Identities = 139/369 (37%), Positives = 201/369 (53%), Gaps = 19/369 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
++ + + G V +P+ ++ L ++LL + +PT +Q+ +IP V RD +
Sbjct: 138 DNIPVDASGKDVPEPILDFSSPPL--DELLMENIKLASFTKPTPVQKYSIPIVTKGRDLM 195
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPP------LNSITKHDG-PLALVLAPTRELAQQIQH 232
A TGSGKT FL P+ +L P S G P ALVLAPTRELA QI
Sbjct: 196 ACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFE 255
Query: 233 EGQSIT-KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQV 291
E + T + W RPC + GG + + GCD+LVATPGR +
Sbjct: 256 EARKFTYRSWVRPC---VVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANI 312
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAKTE--TISNRQTMMFTATFSPTIEKVANGYLKKPS 349
LVLDEAD+M+D GFE Q+ I+ + + ++ NRQT+MF+ATF I+ +A +L
Sbjct: 313 KYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYI 372
Query: 350 YVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLP-NYKAPIIIFINYKRTADWLFDK 407
+++VG S + I Q + YV D ++K +L D L +K +IF+ KR AD L D
Sbjct: 373 FLSVGRVGSTSENITQRILYVDDMDKKSALL--DLLSAEHKGLTLIFVETKRMADQLTDF 430
Query: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
L F+AT +HG ++Q +RE +LS + DIL+AT VA RG+DIPNV+ V+N P
Sbjct: 431 LIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPS 490
Query: 468 SFDSFVHRV 476
D +VHR+
Sbjct: 491 DIDDYVHRI 499
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 217 bits (552), Expect = 4e-56
Identities = 149/470 (31%), Positives = 239/470 (50%), Gaps = 47/470 (10%)
Query: 56 DEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDW 115
D++ + + E ++LL LA K + + +D VD+ S+ YE+ +D+
Sbjct: 335 DDERMVISETLEEEENLLALAAK------RSKKKDVITVDH------SKINYEDFK-KDF 381
Query: 116 RILSEDFN----------------ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYN 159
+ E+ I +G KP+ +W + L + + + N L Y
Sbjct: 382 YVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS--VINSLGYE 439
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALV 219
+PTSIQ IP + + RD IGVA TGSGKT+AFLLP+ + PL + +GP+A++
Sbjct: 440 KPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKT---GEGPIAII 496
Query: 220 LAPTRELAQQIQHEGQSITKLWK-RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXX 278
+ PTRELA QI E + KL R C GG +++ A+L+ G +I+V TPGR
Sbjct: 497 MTPTRELAVQIFRECKPFLKLLNIRAC---CAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 279 XXXXXXXXXXKQVNT---LVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSP 335
++ LVLDEAD+M D GFE Q+ I+ +RQT++F+ATF
Sbjct: 554 DVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRP--DRQTVLFSATFPR 611
Query: 336 TIEKVANGYLKKPSYVTVGGEES-KPKIKQIVRYVPDEEE---KLKILVKDFLPNYKAPI 391
+E +A LKKP +TVGG +++QIV P+E + L++L + +
Sbjct: 612 AMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRT 671
Query: 392 IIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRG 451
++F++ + +AD L L + + + ++HG K Q R+ ++S + G D+LIAT V RG
Sbjct: 672 LVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARG 731
Query: 452 IDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAM 501
+D+ ++ LVVN P + +VHRV F+T E++ A+
Sbjct: 732 LDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAV 781
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 216 bits (551), Expect = 5e-56
Identities = 138/372 (37%), Positives = 199/372 (53%), Gaps = 22/372 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
+D + GG +E P+ + L L NI + Y +PT +Q+++IP V + RD +
Sbjct: 154 DDIPVEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSG--YTQPTPVQKNSIPIVTSGRDLM 210
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG----------PLALVLAPTRELAQQ 229
A TGSGKT FL PIL P D P L+LAPTREL Q
Sbjct: 211 ACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQ 270
Query: 230 IQHEGQSIT-KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX 288
I E + + W RPC ++ GG + + GCD+L ATPGR
Sbjct: 271 IHEESRKFCYRSWVRPC---AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISL 327
Query: 289 KQVNTLVLDEADKMIDFGFEDQLTTIL--AKTETISNRQTMMFTATFSPTIEKVANGYLK 346
+ LVLDEAD+M+D GFE Q+ I+ A ++ RQT+MF+ATF I+ +A +LK
Sbjct: 328 ANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
Query: 347 KPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKIL-VKDFLPNYKAPIIIFINYKRTADWL 404
+++VG S + I Q V +V D E++ +L + LP + +IF+ KR AD L
Sbjct: 388 DYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPP-EGLTLIFVETKRMADTL 446
Query: 405 FDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
D L + F AT++HG ++Q +RE +L L R+G+ I++AT VA RG+DIPNV+ V+N
Sbjct: 447 TDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYD 506
Query: 465 FPKSFDSFVHRV 476
P D +VHR+
Sbjct: 507 LPTDIDDYVHRI 518
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 215 bits (547), Expect = 2e-55
Identities = 133/375 (35%), Positives = 205/375 (54%), Gaps = 14/375 (3%)
Query: 124 ISSKGGTV-EKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVA 182
I+ +GG V KP+ +H P+ +++++ D H+ EPT IQ P ++ RD +G+A
Sbjct: 79 ITVRGGDVCPKPVFAFHHANF-PQYVMDVLM-DQHFTEPTPIQCQGFPLALSGRDMVGIA 136
Query: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242
TGSGKTLA+LLP ++ ++ P L + DGP+ LVLAPTRELAQQ+Q K +
Sbjct: 137 QTGSGKTLAYLLPAIVHINHQPYLE---RGDGPICLVLAPTRELAQQVQQVADDYGKCSR 193
Query: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKM 302
I GG +L G +I +ATPGR ++ LVLDEAD+M
Sbjct: 194 --LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251
Query: 303 IDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKP 360
+D GFE Q+ I+ + +RQT+M++AT+ + ++A +L+ + + VG E +
Sbjct: 252 LDMGFEPQIRKIVDQIRP--DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANH 309
Query: 361 KIKQIVRYVPDEEEKLKI--LVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTL 418
I QIV + E+ K+ L+++ + + IIF+ KR D L ++R + A +
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369
Query: 419 HGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXX 478
HG KSQ +R+ L+ R+GK ILIATDVA RG+D+ +V V+N +P S + +VHR+
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429
Query: 479 XXXXXXXXXXXXFLT 493
F T
Sbjct: 430 TARSTNKGTAYTFFT 444
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 211 bits (536), Expect = 3e-54
Identities = 132/371 (35%), Positives = 203/371 (54%), Gaps = 16/371 (4%)
Query: 109 EMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRST 168
E T D+R + I G V +P++ + + + +++ I Y +PT+IQ
Sbjct: 204 EQETTDYR---QRLGIRVSGFDVHRPVKTFEDCGFSSQ-IMSAIKKQA-YEKPTAIQCQA 258
Query: 169 IPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQ 228
+P V++ RD IG+A TGSGKT AF+LP+++ + P L + +GP+ ++ APTRELA
Sbjct: 259 LPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ---RDEGPIGVICAPTRELAH 315
Query: 229 QIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX 288
QI E + +K + + ++ GG S E L+ GC+I+VATPGR
Sbjct: 316 QIFLEAKKFSKAYG--LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTM 373
Query: 289 KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKP 348
+ + LVLDEAD+M D GFE Q+ +I+ + +RQT++F+AT +EK+A L P
Sbjct: 374 MRASYLVLDEADRMFDLGFEPQVRSIVGQIRP--DRQTLLFSATMPWKVEKLAREILSDP 431
Query: 349 SYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNY--KAPIIIFINYKRTADWLF 405
VTVG + I Q+V +P + EKL L++ LP + +++F + K T D +
Sbjct: 432 IRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK-LPGMIDEGDVLVFASKKATVDEIE 490
Query: 406 DKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQF 465
+L F+ LHG K Q R +L ++G +LIATDVA RG+DI ++ VVN
Sbjct: 491 AQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDI 550
Query: 466 PKSFDSFVHRV 476
K D VHR+
Sbjct: 551 AKDMDMHVHRI 561
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 210 bits (535), Expect = 4e-54
Identities = 133/379 (35%), Positives = 205/379 (53%), Gaps = 17/379 (4%)
Query: 124 ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAS 183
I+ KG KP+++W + I +LN + Y +PT IQ IP +++ RD IG+A
Sbjct: 360 ITVKGKGCPKPIKSWVQCG-ISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAK 417
Query: 184 TGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKR 243
TGSGKT+AFLLP+ I S+ + +GP+A+++ PTRELA QI E + +K
Sbjct: 418 TGSGKTIAFLLPMF---RHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG- 473
Query: 244 PCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXX---XXXKQVNTLVLDEAD 300
+V + GG + E A L+ G +I+V TPGR ++V +VLDEAD
Sbjct: 474 -LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 532
Query: 301 KMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK- 359
+M D GFE Q+ I+ +RQT+MF+ATF +E +A L KP V VGG
Sbjct: 533 RMFDMGFEPQVMRIVDNVRP--DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVC 590
Query: 360 PKIKQIVRYVPDEEEKLKILVKDFLPNYK--APIIIFINYKRTADWLFDKLREARFRATT 417
++Q V + +E++ LK+L + L +Y+ +IIF++ + AD L L A + +
Sbjct: 591 SDVEQQVIVIEEEKKFLKLL--ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMS 648
Query: 418 LHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
LHG Q R+ ++ +NG +L+AT VA RG+D+ ++ LVVN P ++ +VHR
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAG 708
Query: 478 XXXXXXXXXXXXXFLTEEE 496
F+TE++
Sbjct: 709 RTGRAGNKGYAYTFITEDQ 727
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 210 bits (535), Expect = 4e-54
Identities = 153/485 (31%), Positives = 242/485 (49%), Gaps = 21/485 (4%)
Query: 38 SKALSHTVIKRKDNYRNLDEDELY-EEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDN 96
+K + T+ K + +N+D E E+++ + D + LA K L K + +
Sbjct: 410 AKKKTTTLKKGEVIEQNMDSLEYSSEDELEDIRDTAVNLAMKHRKELAKIDHSSVTYAPF 469
Query: 97 YLGKHWSEKKYEEMSTRDWRILSEDFN-ISSKGGTVEKPLRNWHELKLIPEDLLNIITND 155
+ + M+ D D I KG KP++ W + + +++ +
Sbjct: 470 RKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEME--VLRR 527
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
L + +PT IQ IP +++ RD IG+A TGSGKTLAF+LP+ + P S+ DG
Sbjct: 528 LGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP---SMEDGDGA 584
Query: 216 LALVLAPTRELAQQIQHEGQSITK-LWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
+A+++APTREL QI + + +K L RP V + GG + E A L+ G +I+V TP
Sbjct: 585 IAIIMAPTRELCMQIGKDIRKFSKSLGLRP---VCVYGGTGISEQIAELKRGAEIIVCTP 641
Query: 275 GRXXXXXXXXX---XXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTA 331
GR ++V +VLDEAD+M D GFE Q+ I+ +RQT+MF+A
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP--DRQTVMFSA 699
Query: 332 TFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLPNYKAP 390
TF +E +A LKKP V VGG K ++Q V + D+ + K+L +
Sbjct: 700 TFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGS 759
Query: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450
II+F++ + AD L L +A + +LHG Q R+ ++ ++GKV +LIAT VA R
Sbjct: 760 IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAAR 819
Query: 451 GIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVKK 510
G+D+ ++ LVVN P ++ +VHR F+T E+ A D ++
Sbjct: 820 GLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYA----GDIIRA 875
Query: 511 NDFTG 515
D +G
Sbjct: 876 MDLSG 880
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 208 bits (530), Expect = 1e-53
Identities = 135/391 (34%), Positives = 198/391 (50%), Gaps = 19/391 (4%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
+D + + G V +P+ + L L NI + +PT +Q+ ++P V N RD +
Sbjct: 126 DDIPVDASGKDVPEPITEFTSPPLDGLLLENIKL--ARFTKPTPVQKYSVPIVANGRDLM 183
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG-------PLALVLAPTRELAQQIQH 232
A TGSGKT FL P+L + P P A+++APTRELA QI
Sbjct: 184 ACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFD 243
Query: 233 EGQSIT-KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQV 291
E + T + W + C + GG + + GCD+LVATPGR V
Sbjct: 244 EAKKFTYRSWVKAC---VVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANV 300
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAKTET--ISNRQTMMFTATFSPTIEKVANGYLKKPS 349
LVLDEAD+M+D GFE Q+ I+ + + RQT+MF+ATF I+ +A +L
Sbjct: 301 KYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYI 360
Query: 350 YVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLP-NYKAPIIIFINYKRTADWLFDK 407
+++VG S + I Q V YV ++++K +L D L + +IF+ KR AD L D
Sbjct: 361 FLSVGRVGSTSENITQKVLYVENQDKKSALL--DLLSASTDGLTLIFVETKRMADQLTDF 418
Query: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
L FRAT +HG ++Q +RE +L+ R+G +L+AT VA RG+DIPNV+ V+N P
Sbjct: 419 LIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPS 478
Query: 468 SFDSFVHRVXXXXXXXXXXXXXXFLTEEEDH 498
D +VHR+ F E +
Sbjct: 479 DVDDYVHRIGRTGRAGNTGLATAFFNSENSN 509
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 208 bits (530), Expect = 1e-53
Identities = 132/389 (33%), Positives = 212/389 (53%), Gaps = 18/389 (4%)
Query: 109 EMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRST 168
+ ++R L E I+ +G + KP++++ ++ P+ +L + + EPT IQ
Sbjct: 75 DTEVEEYRKLRE---ITVEGKDIPKPVKSFRDVGF-PDYVLEEVKK-AGFTEPTPIQSQG 129
Query: 169 IPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQ 228
P + RD IG+A TGSGKTL++LLP ++ ++ P L DGP+ LVLAPTRELA
Sbjct: 130 WPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPML---AHGDGPIVLVLAPTRELAV 186
Query: 229 QIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX 288
QIQ E K I GG +L+ G +I++ATPGR
Sbjct: 187 QIQQEASKFGSSSK--IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNL 244
Query: 289 KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKP 348
++V LVLDEAD+M+D GF+ Q+ I++ +RQT+ ++AT+ +E+++ +L P
Sbjct: 245 RRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP--DRQTLYWSATWPKEVEQLSKKFLYNP 302
Query: 349 SYVTVGGEESKPK--IKQIVRYVPDEEE--KLKILVKDFLPNYKAPIIIFINYKRTADWL 404
V +G + K I+QIV + + ++ KL L++D + + I++F++ K+ D +
Sbjct: 303 YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSR--ILVFLDTKKGCDQI 360
Query: 405 FDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
+LR + A ++HG KSQ +R+ LS R+GK I+ ATDVA RG+D+ +V V+N
Sbjct: 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD 420
Query: 465 FPKSFDSFVHRVXXXXXXXXXXXXXXFLT 493
FP S + +VHR+ F T
Sbjct: 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 207 bits (526), Expect = 4e-53
Identities = 131/370 (35%), Positives = 202/370 (54%), Gaps = 19/370 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
ED I + G V P+ + E+ L + LN+ Y +PT +QR IP ++ RD +
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDL--GEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLM 200
Query: 180 GVASTGSGKTLAFLLPILIKL----HGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQ 235
A TGSGKT AF PI+ + H P S T + PLA++L+PTRELA QI E +
Sbjct: 201 ACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVY--PLAVILSPTRELASQIHDEAK 258
Query: 236 SITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLV 295
+ ++ +V GG + + L G DILVATPGR + + L
Sbjct: 259 KFS--YQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLA 316
Query: 296 LDEADKMIDFGFEDQLTTILAKTETISN--RQTMMFTATFSPTIEKVANGYLKKPSYVTV 353
LDEAD+M+D GFE Q+ I+ + + RQT++F+ATF I+++A +L ++ V
Sbjct: 317 LDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376
Query: 354 GGEESKPK-IKQIVRYVPDEEEKLKILV------KDFLPNYKAPIIIFINYKRTADWLFD 406
G S I Q V +V D +++ ++ ++ + +A ++F+ KR AD L +
Sbjct: 377 GRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLEN 436
Query: 407 KLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFP 466
L F AT++HG ++Q++RE +L ++G+ IL+ATDVA RG+DIP+V+ VVN P
Sbjct: 437 WLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLP 496
Query: 467 KSFDSFVHRV 476
D +VHR+
Sbjct: 497 NDIDDYVHRI 506
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 207 bits (526), Expect = 4e-53
Identities = 136/361 (37%), Positives = 202/361 (55%), Gaps = 21/361 (5%)
Query: 124 ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAS 183
I+ KG V P + E P+ ++N I + +PT+IQ P ++ RD +GVA
Sbjct: 138 ITIKGDQVPTPSIEFEEGGF-PDYVMNEIRKQ-GFAKPTAIQAQGWPIAMSGRDLVGVAQ 195
Query: 184 TGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQH---EGQSITKL 240
TGSGKTLA++LP ++ ++ P L + DGP+ALVLAPTRELAQQIQ E S T +
Sbjct: 196 TGSGKTLAYVLPAVVHINNQPRLE---RGDGPIALVLAPTRELAQQIQQVAIEFGSNTHV 252
Query: 241 WKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEAD 300
+ C I GG + + +L G +I++ATPGR K+ LVLDEAD
Sbjct: 253 -RNTC----IFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEAD 307
Query: 301 KMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--S 358
+M+D GFE Q+ I+ + +RQ +M++AT+ + ++A +L V +G +
Sbjct: 308 RMLDMGFEPQIRKIMQQIRP--DRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSA 365
Query: 359 KPKIKQIVRYVPDEEEKLKILVK---DFLPNYKAPIIIFINYKRTADWLFDKLREARFRA 415
I QIV V DE EKL L+K D + IIF+ K+ D + + +RA
Sbjct: 366 NHNILQIVD-VCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRA 424
Query: 416 TTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
+HG KSQ++R+ LS RNG+ IL+ATDVA RG+D+ +V V+N +P + + +VHR
Sbjct: 425 CAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHR 484
Query: 476 V 476
+
Sbjct: 485 I 485
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 207 bits (526), Expect = 4e-53
Identities = 133/429 (31%), Positives = 220/429 (51%), Gaps = 19/429 (4%)
Query: 81 DLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHE 140
+L+K + E + ++ H + E + R + I+ G + P+ ++ E
Sbjct: 185 NLVKPKWENLEPFLKDFYNIHPNTLAKSEQQVAEIR---RELEITVSGNELPHPVVSFEE 241
Query: 141 LKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKL 200
L P ++ + + +PT+IQ P ++ RD +G+A TGSGKTLA++LP ++ +
Sbjct: 242 SSL-PAHVIEEMKRQ-GFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHI 299
Query: 201 HGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEIS 260
PP I + +GP+ALVLAPTRELAQQIQ + L K I GG S +
Sbjct: 300 GNQPP---IIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 356
Query: 261 ANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTET 320
+L G ++++ATPGR ++ LVLDEAD+M+D GFE Q+ I+ +
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 416
Query: 321 ISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEE--EKL 376
+RQ +M++AT+ ++ +A +L + +G + I+QIV + E ++L
Sbjct: 417 --DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRL 474
Query: 377 KILVKDFLP-----NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSL 431
L+ + P N II+F+ K + + +R + AT++HG K+Q +R+ L
Sbjct: 475 VCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVL 534
Query: 432 SLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXF 491
RNGK +ILIATDVA RG+D+ ++ V+N +P S +++VHR+ F
Sbjct: 535 KDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTF 594
Query: 492 LTEEEDHSA 500
T + A
Sbjct: 595 FTPDNAKQA 603
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 206 bits (525), Expect = 6e-53
Identities = 129/387 (33%), Positives = 201/387 (51%), Gaps = 18/387 (4%)
Query: 119 SEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDF 178
S I+ GG V PL ++ PE L +++ ++ PT IQ + P + RD
Sbjct: 141 SRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAG--FSAPTPIQAQSWPIAMQGRDI 198
Query: 179 IGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSIT 238
+ +A TGSGKTL +L+P + L I + + GP LVL+PTRELA QIQ E
Sbjct: 199 VAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPTILVLSPTRELATQIQEEAVKFG 254
Query: 239 KLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDE 298
+ + C + GG +L G DI+VATPGR +Q++ LVLDE
Sbjct: 255 RSSRISCTC--LYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 299 ADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEES 358
AD+M+D GFE Q+ I+ + T RQT+M+TAT+ + K+A L P+ V +G +
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPT--KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDE 370
Query: 359 KPKIKQIVRYVP-----DEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARF 413
K I +++ +++ +L+ +++ P K +IIF + KR D L L +F
Sbjct: 371 LVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSK--VIIFCSTKRMCDQLTRNLTR-QF 427
Query: 414 RATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFV 473
A +HG KSQ +R++ L+ R+G+ +L+ATDVA RG+D+ ++ VVN FP + +V
Sbjct: 428 GAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYV 487
Query: 474 HRVXXXXXXXXXXXXXXFLTEEEDHSA 500
HR+ F +++ A
Sbjct: 488 HRIGRTGRAGATGQAFTFFGDQDSKHA 514
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 206 bits (524), Expect = 7e-53
Identities = 140/400 (35%), Positives = 208/400 (52%), Gaps = 27/400 (6%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
ED I + G V P+ + E+ L + LN+ Y +PT +QR+ IP + RD +
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDL--GEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLM 187
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG-----PLALVLAPTRELAQQIQHEG 234
A TGSGKT AF PI+ GI I + G PLA++L+PTRELA QI E
Sbjct: 188 ACAQTGSGKTAAFCFPII---SGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEA 244
Query: 235 QSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTL 294
+ + ++ +V GG + + L G DILVATPGR + V L
Sbjct: 245 RKFS--YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFL 302
Query: 295 VLDEADKMIDFGFEDQLTTILAKTETISN--RQTMMFTATFSPTIEKVANGYLKKPSYVT 352
LDEAD+M+D GFE Q+ I+ + + RQTM+F+ATF I+++A+ +L ++
Sbjct: 303 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLA 362
Query: 353 VGGEESKPK-IKQIVRYVPDEEEKLKILVKDFL--------PNYKAPIIIFINYKRTADW 403
VG S I Q V +V D +++ ++ D L +A ++F+ K+ AD
Sbjct: 363 VGRVGSSTDLIVQRVEFVHDSDKRSHLM--DLLHAQRENGNQGKQALTLVFVETKKGADS 420
Query: 404 LFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNL 463
L + L F ATT+HG +SQ++RE +L + G+ IL+ATDVA RG+DIP+V+ VVN
Sbjct: 421 LENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNF 480
Query: 464 QFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAK 503
P D +VHR+ F ++++ MAK
Sbjct: 481 DLPNDIDDYVHRIGRTGRAGNSGLATAFF--NDNNTTMAK 518
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 206 bits (523), Expect = 9e-53
Identities = 134/395 (33%), Positives = 207/395 (51%), Gaps = 26/395 (6%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDL---HYNEPTSIQRSTIPNVINNR 176
ED + + G V + ++ +++L II N++ Y++PT +Q+ IP +IN R
Sbjct: 279 EDIPVEATGQNVPPNITSFDDVQLT-----EIIRNNVALARYDKPTPVQKHAIPIIINGR 333
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHG---IPPLNSITKHDG----PLALVLAPTRELAQQ 229
D + A TGSGKT AFL+PIL +++ +PP S ++ PL LVLAPTRELA Q
Sbjct: 334 DLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQ 393
Query: 230 IQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXK 289
I E + ++ + GG++ E L GC ++VATPGR +
Sbjct: 394 IFEEAKKFA--YRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLE 451
Query: 290 QVNTLVLDEADKMIDFGFEDQLTTILAKTET--ISNRQTMMFTATFSPTIEKVANGYLKK 347
+ LVLDEAD+M+D GFE Q+ I+ + RQT+MF+ATF I+++A+ +L
Sbjct: 452 NIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSN 511
Query: 348 PSYVTVGGEESKPK-IKQIVRYV--PDEEEKLKILVKDFL--PNYKAP--IIIFINYKRT 400
++ VG S + I Q + +V PD+ L L+ P Y +IF+ K+
Sbjct: 512 YIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKG 571
Query: 401 ADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLV 460
AD L + L + T++HG ++Q++RE +L R+G IL+AT VA RG+DIP+V V
Sbjct: 572 ADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHV 631
Query: 461 VNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEE 495
+N P + +VHR+ F E+
Sbjct: 632 INFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 205 bits (521), Expect = 2e-52
Identities = 139/482 (28%), Positives = 228/482 (46%), Gaps = 18/482 (3%)
Query: 30 PQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNE 89
P + S H +K K R E +E+ E + +L + L+ ++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARK----ESAKEKQLKEEEKILESVAEGRALMSVKEMA 133
Query: 90 DESIVDNYLGKHWSEKKYE-EMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDL 148
D+ + W+ +Y MS + + ++I +G + P++++ E+K L
Sbjct: 134 KGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAIL 193
Query: 149 LNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNS 208
+ +H+ PT IQ IP +++ RD IG+A TGSGKTL F LP+++
Sbjct: 194 RGLKKKGIHH--PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLP 251
Query: 209 ITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN----IVSIVGGHSLEEISANLR 264
+K +GP L++ P+RELA+Q + +L + + +GG S++E +R
Sbjct: 252 FSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIR 311
Query: 265 DGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR 324
G ++VATPGR L LDEAD+MID GFE + TI + + R
Sbjct: 312 HGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK--GQR 369
Query: 325 QTMMFTATFSPTIEKVANGYLKKPSYVTVG--GEESKPKIKQIVRYVPDEEEKLKILVKD 382
QT++F+AT I+ A L KP + VG G S I++ V YV +E + + +L +
Sbjct: 370 QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE-VEYVKEEAKMVYLL--E 426
Query: 383 FLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDIL 442
L P++IF K D + + L A +HG K QE+R ++ R GK D+L
Sbjct: 427 CLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVL 486
Query: 443 IATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMA 502
+ATDVA +G+D P + V+N P+ +++VHR+ F+ + D S +
Sbjct: 487 VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLM 546
Query: 503 KL 504
L
Sbjct: 547 DL 548
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 204 bits (520), Expect = 2e-52
Identities = 135/406 (33%), Positives = 214/406 (52%), Gaps = 20/406 (4%)
Query: 96 NYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITND 155
N+ +H S + + +R +E ++ G + KP+ + E P+ +LN + +
Sbjct: 76 NFYVEHESVRDRSDSEIAQFRKENE---MTISGHDIPKPITTFDEAGF-PDYVLNEVKAE 131
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
+++PT IQ P ++ RD +G+A+TGSGKTL++ LP ++ ++ P L DGP
Sbjct: 132 -GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLL---APGDGP 187
Query: 216 LALVLAPTRELAQQIQHEGQSI--TKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVAT 273
+ LVLAPTRELA QIQ E + + C + GG + +L G +I++AT
Sbjct: 188 IVLVLAPTRELAVQIQTECSKFGHSSRIRNTC----VYGGVPKSQQIRDLSRGSEIVIAT 243
Query: 274 PGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATF 333
PGR K+V LVLDEAD+M+D GFE Q+ I+ + +RQT+M++AT+
Sbjct: 244 PGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP--DRQTLMWSATW 301
Query: 334 SPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEE--EKLKILVKDFLPNYKA 389
++++A YL P V VG E + I QIV V D E ++L ++ + +
Sbjct: 302 PKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEY 361
Query: 390 PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAG 449
+IF + KR D + LRE + A +HG K Q +R+ L RNG+ I++ATDVA
Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421
Query: 450 RGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEE 495
RGID+ ++ V+N P + + +VHR+ F TE+
Sbjct: 422 RGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQ 467
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 204 bits (518), Expect = 4e-52
Identities = 145/474 (30%), Positives = 225/474 (46%), Gaps = 28/474 (5%)
Query: 43 HTVIKRKDNYRNLD--EDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGK 100
HT +K+ + L E +L EE+ E A+L K Q E +
Sbjct: 87 HTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQP------IKT 140
Query: 101 HWSEKKY-EEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYN 159
W +Y EMS + + + I +G T P+R++ E+K P+ +LN + N
Sbjct: 141 AWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKF-PKGILNGLAAKGIKN 199
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILI----KLHGIPPLNSITKHDGP 215
PT IQ +P V+ RD IG+A TGSGKTL F+LP+++ + + +P +++GP
Sbjct: 200 -PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP----FERNEGP 254
Query: 216 LALVLAPTRELAQQ----IQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILV 271
L++ P+RELA+Q IQH + + +GG + E + G I+V
Sbjct: 255 YGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVV 314
Query: 272 ATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTA 331
ATPGR L +DEAD+MID GFE+ + TI + + RQT++F+A
Sbjct: 315 ATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK--GQRQTLLFSA 372
Query: 332 TFSPTIEKVANGYLKKPSYVTVG-GEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAP 390
T I+ A L KP + VG + + Q V YV E + + +L D L P
Sbjct: 373 TMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLL--DCLQKTAPP 430
Query: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450
++IF K+ D + + L A +HG K QE+R ++ R GK D+L+ATDVA +
Sbjct: 431 VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASK 490
Query: 451 GIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
G+D PNV V+N P +++VHR+ + + + S + L
Sbjct: 491 GLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDL 544
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 203 bits (517), Expect = 5e-52
Identities = 136/426 (31%), Positives = 225/426 (51%), Gaps = 21/426 (4%)
Query: 83 LKKRQNEDESIVD---NYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWH 139
L K+ ++E+++ ++ +H + + + ++R ++ I G V KP+ +
Sbjct: 69 LVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYR---KEKEIVVHGLNVPKPVTTFE 125
Query: 140 ELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIK 199
E P +L + L + PT IQ+ P ++ RD +G+++TGSGKTL++ LP ++
Sbjct: 126 EAGF-PNYVLKEV-KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 200 LHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRP-CNIVSIVGGHSLEE 258
++ P L+ DGP+ LVLAPTRELA QIQ E TK K + GG
Sbjct: 184 INAQPLLSP---GDGPIVLVLAPTRELAVQIQQE---CTKFGKSSRIRNTCVYGGVPRGP 237
Query: 259 ISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKT 318
+L G +I +ATPGR ++V LVLDEAD+M+D GFE Q+ I+ +
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 319 ETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEEEKL 376
+RQT+MF+AT+ ++++A YL VTVG + + IKQIV V + +++
Sbjct: 298 RP--DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355
Query: 377 KIL--VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLL 434
++ +++ L + ++IF KR AD + LR+ + A +HG K+Q++R+ L+
Sbjct: 356 RLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEF 415
Query: 435 RNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE 494
R GK I++ATDVA RGID+ ++ V N FP + + +VHR+ + T
Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475
Query: 495 EEDHSA 500
+ A
Sbjct: 476 DNAKQA 481
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 203 bits (517), Expect = 5e-52
Identities = 145/458 (31%), Positives = 240/458 (51%), Gaps = 22/458 (4%)
Query: 47 KRKDNYRNLDEDELYE-EQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEK 105
K+K + +N +E +E E+V E + + + + KKR+ E++ N K EK
Sbjct: 25 KKKKSKKNKHTEENHEVEEVPQEVTNGVEEELSNKEKKKKRKREEKESEKNKK-KDVPEK 83
Query: 106 KYEEMSTRDWRILSEDFNISSKGGTVEK--PLRNWHELKLIPEDLLNIITNDLHYNEPTS 163
K E + + ++ KG K L+ + E L PE++L+ + +P+
Sbjct: 84 KLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNL-PENVLDCCKT---FEKPSP 139
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIK-LHGIPPLNSITKHDGPLALVLAP 222
IQ T P +++ RD IG+A TGSGKTLAF +P ++ L + +K P LVL+P
Sbjct: 140 IQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSP 199
Query: 223 TRELAQQIQHEGQSITKLWKRPCNIVSIV--GGHSLEEISANLRDGCDILVATPGRXXXX 280
TRELA QI + + PC + SI GG S + +R G DI++ TPGR
Sbjct: 200 TRELAVQIS----DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDL 255
Query: 281 XXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKV 340
V+ +VLDEAD+M+D GFE+ + IL+ T + RQ +MF+AT+ + K+
Sbjct: 256 IESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKV--RQMVMFSATWPLDVHKL 313
Query: 341 ANGYLK-KPSYVTVGGEE--SKPKIKQIVRYVPDE--EEKLKILVKDFLPNYKAPIIIFI 395
A ++ P V +G + + + QI+ + + +++L L++ + + K +++F
Sbjct: 314 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 373
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
YK A+ L L++ ++A ++HG+K+Q +R SLSL + G +L+ATDVA RG+DIP
Sbjct: 374 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 433
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLT 493
+V +V+N FP + + +VHR+ F T
Sbjct: 434 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 203 bits (516), Expect = 6e-52
Identities = 129/395 (32%), Positives = 201/395 (50%), Gaps = 14/395 (3%)
Query: 128 GGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSG 187
G V +P++++ L D++ N Y PT IQ+ +IP + + RD + A TGSG
Sbjct: 237 GSDVPQPIQHFTSADL--RDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSG 294
Query: 188 KTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI 247
KT AFLLPIL KL P + + P ++++PTRELA QI +E + ++ I
Sbjct: 295 KTAAFLLPILSKLLEDPHELELGR---PQVVIVSPTRELAIQIFNEARKFA--FESYLKI 349
Query: 248 VSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGF 307
+ GG S + + GC +++ATPGR + +VLDEAD+M+D GF
Sbjct: 350 GIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGF 409
Query: 308 EDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVT---VGGEESKPKIKQ 364
+ + I+ QT+MF+ATF I+++A +LK +V VGG S +KQ
Sbjct: 410 SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSD--VKQ 467
Query: 365 IVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQ 424
+ V ++ K++ + L I+F+ KR AD+L L E F T++HG + Q
Sbjct: 468 TIYEVNKYAKRSKLI--EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ 525
Query: 425 EQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXX 484
QRE +L +NG + +LIAT VA RG+DI N+ V+N P D +VHR+
Sbjct: 526 SQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 585
Query: 485 XXXXXXFLTEEEDHSAMAKLFDYVKKNDFTGENYI 519
F E+D + A L ++ + T +++
Sbjct: 586 NGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 620
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 202 bits (514), Expect = 1e-51
Identities = 131/385 (34%), Positives = 195/385 (50%), Gaps = 18/385 (4%)
Query: 117 ILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNR 176
I + +++ G + P + L PE L +++ + PT IQ T P + +R
Sbjct: 416 IYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAG--FPSPTPIQAQTWPIALQSR 473
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQS 236
D + +A TGSGKTL +L+P I L +GP L+LAPTRELA QIQ E
Sbjct: 474 DIVAIAKTGSGKTLGYLIPAFILLRHCRN----DSRNGPTVLILAPTRELATQIQDEALR 529
Query: 237 ITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVL 296
+ + C + GG L G DI+VATPGR +QV+ LVL
Sbjct: 530 FGRSSRISCTC--LYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVL 587
Query: 297 DEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGE 356
DEAD+M+D GFE Q+ I+ E RQT+M+TAT+ + K+A+ L P V +G
Sbjct: 588 DEADRMLDMGFEPQIRKIV--NEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRV 645
Query: 357 ESKPKIKQIVRYVP-----DEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREA 411
+ K I +YV ++E +L+ +++ K +IIF + KR D L +
Sbjct: 646 DELAANKAITQYVEVVPQMEKERRLEQILRSQERGSK--VIIFCSTKRLCDHLARSVGR- 702
Query: 412 RFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDS 471
F A +HG K+Q +R+ L+ R+GK +LIATDVA RG+DI ++ +V+N FP +
Sbjct: 703 HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED 762
Query: 472 FVHRVXXXXXXXXXXXXXXFLTEEE 496
+VHR+ F TE++
Sbjct: 763 YVHRIGRTGRAGATGVAFTFFTEQD 787
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 202 bits (513), Expect = 1e-51
Identities = 131/383 (34%), Positives = 196/383 (50%), Gaps = 20/383 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
ED + + GG V P+ + ++ L D LN+ Y PT +QR IP ++ RD +
Sbjct: 135 EDIPVETSGGDVPPPVNTFADIDL--GDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG-----PLALVLAPTRELAQQIQHEG 234
A TGSGKT AF PI+ GI + + G P A++L+PTRELA QI E
Sbjct: 193 ACAQTGSGKTAAFCFPII---SGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEA 249
Query: 235 QSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTL 294
+ + ++ +V GG + + L GCDILVATPGR + + L
Sbjct: 250 KKFS--YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFL 307
Query: 295 VLDEADKMIDFGFEDQLTTILAKTETISN--RQTMMFTATFSPTIEKVANGYLKKPSYVT 352
LDEAD+M+D GFE Q+ I+ + + RQTM+F+ATF I+++A ++ ++
Sbjct: 308 ALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLA 367
Query: 353 VGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREA 411
VG S I Q V +V + +++ ++ D L + KR AD L + L
Sbjct: 368 VGRVGSSTDLITQRVEFVQESDKRSHLM--DLLHAQRETQD---KTKRGADTLENWLCMN 422
Query: 412 RFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDS 471
F AT++HG ++Q++RE +L + G+ IL+ATDVA RG+DIP+V+ VVN P D
Sbjct: 423 EFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 482
Query: 472 FVHRVXXXXXXXXXXXXXXFLTE 494
+VHR+ F E
Sbjct: 483 YVHRIGRTGRAGKSGIATAFFNE 505
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 201 bits (510), Expect = 3e-51
Identities = 127/387 (32%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 123 NISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVA 182
+I+ KG KP++ W + + ++N++ Y++PTSIQ IP++++ RD IG+A
Sbjct: 291 SITVKGIDCPKPIKTWAQCG-VNLKMMNVLKK-FEYSKPTSIQAQAIPSIMSGRDVIGIA 348
Query: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242
TGSGKTLAFLLP+ + P L + DGP+A++LAPTRELA Q E K
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELE---EGDGPIAVILAPTRELAMQTYKEANKFAK--P 403
Query: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXX---XXXKQVNTLVLDEA 299
+ GG + E A+L+ G +I+V TPGR ++V LVLDEA
Sbjct: 404 LGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEA 463
Query: 300 DKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK 359
D+M D GFE Q+ ++ ++QT++F+ATF +E +A L KP + VGG+
Sbjct: 464 DRMFDKGFEPQIMKVVNNIRP--DKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVV 521
Query: 360 -PKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATT- 417
I Q + ++ LK+L + + I+F++ + AD + D+L + +
Sbjct: 522 CSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAP 581
Query: 418 LHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
LHG Q R+ S++ + G + +L+AT VA RG+D+ N+ LVVN P ++ +VHRV
Sbjct: 582 LHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVG 641
Query: 478 XXXXXXXXXXXXXFLTEEEDHSAMAKL 504
F+ E ++
Sbjct: 642 RTGRAGRKGYAYTFVLPEHQEKMAGEI 668
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 201 bits (510), Expect = 3e-51
Identities = 127/387 (32%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 123 NISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVA 182
+I+ KG KP++ W + + ++N++ Y++PTSIQ IP++++ RD IG+A
Sbjct: 291 SITVKGIDCPKPIKTWAQCG-VNLKMMNVLKK-FEYSKPTSIQAQAIPSIMSGRDVIGIA 348
Query: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242
TGSGKTLAFLLP+ + P L + DGP+A++LAPTRELA Q E K
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELE---EGDGPIAVILAPTRELAMQTYKEANKFAK--P 403
Query: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXX---XXXKQVNTLVLDEA 299
+ GG + E A+L+ G +I+V TPGR ++V LVLDEA
Sbjct: 404 LGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEA 463
Query: 300 DKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK 359
D+M D GFE Q+ ++ ++QT++F+ATF +E +A L KP + VGG+
Sbjct: 464 DRMFDKGFEPQIMKVVNNIRP--DKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVV 521
Query: 360 -PKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATT- 417
I Q + ++ LK+L + + I+F++ + AD + D+L + +
Sbjct: 522 CSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAP 581
Query: 418 LHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
LHG Q R+ S++ + G + +L+AT VA RG+D+ N+ LVVN P ++ +VHRV
Sbjct: 582 LHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVG 641
Query: 478 XXXXXXXXXXXXXFLTEEEDHSAMAKL 504
F+ E ++
Sbjct: 642 RTGRAGRKGYAYTFVLPEHQEKMAGEI 668
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 200 bits (509), Expect = 4e-51
Identities = 125/401 (31%), Positives = 205/401 (50%), Gaps = 11/401 (2%)
Query: 109 EMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRST 168
+MST+ ++ + ++I+ G + P++N+ ++K P LL ++ D PT IQ
Sbjct: 70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKF-PSPLLRML-KDKGIMHPTPIQVQG 127
Query: 169 IPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQ 228
+P V++ RD IG+A TGSGKTL F+LP++I + I +GP+ALV+ P+RELA+
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAK 187
Query: 229 Q----IQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXX 284
Q ++ S+ + + +GG + ++ G I+VATPGR
Sbjct: 188 QTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKK 247
Query: 285 XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGY 344
L LDEAD+++D GFED + + + S RQT++F+AT I+ A
Sbjct: 248 KMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFK--SQRQTLLFSATMPAKIQIFATSA 305
Query: 345 LKKPSYVTVG-GEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADW 403
L KP V VG + + Q V YV E + + +L + L P++IF K D
Sbjct: 306 LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL--ECLQKTTPPVLIFCENKADVDD 363
Query: 404 LFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNL 463
+ + L A +HG K QE R++++SL + GK D+L+ATDVA +G+D P++ V+N
Sbjct: 364 IHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINY 423
Query: 464 QFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
P +++VHR+ F+ + + + L
Sbjct: 424 DMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDL 464
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 197 bits (501), Expect = 3e-50
Identities = 134/385 (34%), Positives = 201/385 (51%), Gaps = 19/385 (4%)
Query: 127 KGGTVEKPLRN--WHELKLIPE--DLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVA 182
K G P+ N W + E D+L IT + +++P+ IQ P ++ D IG+A
Sbjct: 269 KEGETSPPIPNPVWTFEQCFAEYPDMLEEITK-MGFSKPSPIQSQAWPILLQGHDMIGIA 327
Query: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242
TG+GKTLAFLLP +I H G LVLAPTRELA QI+ E + K
Sbjct: 328 QTGTGKTLAFLLPGMI--HTEYQSTPRGTRGGANVLVLAPTRELALQIEME---VKKYSF 382
Query: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKM 302
R V + GG + ++L G +I++ TPGR + LVLDEAD+M
Sbjct: 383 RGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRM 442
Query: 303 IDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKP 360
+D GFE Q+ ++ +RQT+M +AT+ P + ++A Y+K P V VG + +
Sbjct: 443 LDMGFEPQIRKVMLDIRP--DRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATH 500
Query: 361 KIKQIVRYVPDEEEKLKILVKDFLPNYKAP--IIIFINYKRTADWLFDKLREARFRATTL 418
+KQI++ + D+ +K + F+ N + IIIF K AD L +L F +
Sbjct: 501 SVKQIIKLMEDDMDKFNTITS-FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCI 559
Query: 419 HGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXX 478
HG++ Q RE +++ +++G V IL+ATDVA RG+DI +++ V+N FP + + +VHRV
Sbjct: 560 HGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGR 619
Query: 479 XXXXXXXXXXXXFLTEEEDHSAMAK 503
F T E+ AMAK
Sbjct: 620 TGRAGRQGTSISFFTRED--WAMAK 642
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 197 bits (500), Expect = 4e-50
Identities = 125/350 (35%), Positives = 188/350 (53%), Gaps = 17/350 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +PT IQ P +++ +D +GVA TGSGKT AF +P I L + K G
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVP------AISHLMNDQKKRGIQV 185
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LV++PTRELA QI +T C + GG +E L+ ++VATPGR
Sbjct: 186 LVISPTRELASQIYDNLIVLTDKVGMQC--CCVYGGVPKDEQRIQLKKS-QVVVATPGRL 242
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
QVN LVLDEAD+M++ GFE+ + I+ +T+ S RQT+MFTAT+ +
Sbjct: 243 LDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDA-SKRQTLMFTATWPKEV 301
Query: 338 EKVANGYLKKPSYVTVGGEE---SKPKIKQIVRYVPD--EEEKLKILVKDFL--PNYKAP 390
++A+ ++ P V++G + + +I QIV V +E KL L+K + P
Sbjct: 302 RELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEK 361
Query: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450
++IF YK+ A + L+ + +HG SQ+QR +L+ ++GK ++L+ATDVA R
Sbjct: 362 VLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAAR 421
Query: 451 GIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSA 500
G+DIPNV V+NL FP + + +VHR+ TE+E H A
Sbjct: 422 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLA 471
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 196 bits (499), Expect = 6e-50
Identities = 130/416 (31%), Positives = 210/416 (50%), Gaps = 22/416 (5%)
Query: 124 ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAS 183
++ +G V +P+ ++E L P + ++ + +PT IQ + P ++ RD I +A
Sbjct: 118 VTLEGRGVPRPVFEFNEAPL-PGQIHELLYGK--FQKPTVIQSISWPIAMSGRDIISIAK 174
Query: 184 TGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKR 243
TGSGKTLAF+LP L+ I + +GP LVL PTRELAQQ+Q SI
Sbjct: 175 TGSGKTLAFMLPALVH---ITKQAHRQRGEGPAVLVLLPTRELAQQVQEV--SIDFCHSL 229
Query: 244 PCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMI 303
+ + GG S + +L G DI+VATPGR K+ + LVLDEAD+M+
Sbjct: 230 GLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRML 289
Query: 304 DFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPK 361
D GFE Q+ I+ + +RQT+MF+AT+ + +A+ + K +++ VG E +
Sbjct: 290 DMGFEPQIKKIIGQIRP--DRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHN 347
Query: 362 IKQIVRYVPDEEEKLKI--LVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLH 419
I Q+V + + ++ K+ L+ + + IIF+ KR AD L +R + +H
Sbjct: 348 ITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIH 407
Query: 420 GSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXX 479
G K+Q +R+ L + GK I++ATDVA RG+D+ ++ V+N +P + + +VHR+
Sbjct: 408 GDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRT 467
Query: 480 XXXXXXXXXXXFLTEEEDHSA--MAKLFDYVKK------NDFTGENYISKEAMSKY 527
F T A + K+ D K+ D +Y + +Y
Sbjct: 468 GRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRSYGGSNSRGRY 523
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 196 bits (498), Expect = 7e-50
Identities = 131/492 (26%), Positives = 232/492 (46%), Gaps = 38/492 (7%)
Query: 45 VIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSE 104
+++RK L+E+ E+ +P L+ + D+ + E + + + +H S+
Sbjct: 28 ILQRKGKASELEEEADKEKLAEAKPSLLVQATQLKRDVPEVSATEQIILQEKEMMEHLSD 87
Query: 105 KK---------------------------YEEMSTRDWRILSEDFNISSKGGTVEKPLRN 137
KK +MS++ ++ + ++I G + P++N
Sbjct: 88 KKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKN 147
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+ ++K P +L+ + + +PT IQ +P ++ RD IG+A TGSGKTL F+LP++
Sbjct: 148 FKDMK-FPRPVLDTL-KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
Query: 198 IKLHGIPPLNSITKHDGPLALVLAPTRELAQQ----IQHEGQSITKLWKRPCNIVSIVGG 253
+ + I +GP+ L++ P+RELA+Q ++ + + P + +GG
Sbjct: 206 MIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGG 265
Query: 254 HSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTT 313
+ ++ G I+VATPGR L LDEAD+++D GFED +
Sbjct: 266 IDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIRE 325
Query: 314 ILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVG-GEESKPKIKQIVRYVPDE 372
+ + S RQT++F+AT I+ A L KP V VG + + Q V YV E
Sbjct: 326 VFDHFK--SQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE 383
Query: 373 EEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLS 432
+ + +L + L P++IF K D + + L A +HG K QE RE+++S
Sbjct: 384 AKIVYLL--ECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 441
Query: 433 LLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFL 492
+ GK D+L+ATDVA +G+D P++ V+N P +++VHR+ F+
Sbjct: 442 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 501
Query: 493 TEEEDHSAMAKL 504
+ + + + L
Sbjct: 502 NKNQSETTLLDL 513
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 196 bits (497), Expect = 1e-49
Identities = 139/510 (27%), Positives = 237/510 (46%), Gaps = 19/510 (3%)
Query: 3 RPVSIDDLISDTVPAKKPRFLIKKRTFPQPEEEEASKAL--SHTVIKRKDNYRNLDEDEL 60
R + +++ T+ K+ +K+ + EEA K L H I + E +L
Sbjct: 59 RRALLKQVLAPTMNQKEEIERKRKKKEEDKQSEEARKTLLEKHAEIMETQGVIDESERQL 118
Query: 61 YEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKY-EEMSTRDWRILS 119
EE+ +LL + LL + + + W + S D+ I
Sbjct: 119 MEEE------ELLDKVTRGGGLLAVAELTKGEKYEEPIVTAWRPPGHIRRQSQEDYEIQR 172
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
+ IS +G + P+ ++ E+K P+ LL + PT+IQ IP ++ RD I
Sbjct: 173 KRLGISCEGDHIPPPIGSFLEMKF-PKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMI 231
Query: 180 GVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQ----HEGQ 235
G+ASTGSGKT+ F+LP+++ + +GP L++ P+RELA+QI
Sbjct: 232 GIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFD 291
Query: 236 SITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLV 295
++ K +GG + E + ++RDG I+VATPGR + LV
Sbjct: 292 ALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLV 351
Query: 296 LDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVG- 354
LDEAD+M+D GFED++ +I + + RQT++F+AT I+ A L KP V VG
Sbjct: 352 LDEADRMLDMGFEDEIKSIFYFFK--AQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGR 409
Query: 355 GEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFR 414
+ + Q + +V E + +++L + L ++IF K D +++ L
Sbjct: 410 AGAASLNVLQELEFVRSENKLVRVL--ECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVE 467
Query: 415 ATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVH 474
++HG K Q R + R + D+L+ATDVA +G+D + V+N P+ +++VH
Sbjct: 468 VASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVH 527
Query: 475 RVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
R+ F+ ++ + S ++ L
Sbjct: 528 RIGRTGRSGRKGLATTFINKKSEMSVLSDL 557
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 195 bits (496), Expect = 1e-49
Identities = 140/396 (35%), Positives = 207/396 (51%), Gaps = 26/396 (6%)
Query: 93 IVDNYLGKHWSEKKYEEMSTRDWRILSEDFNIS---SKGGTVEKPLRNW-----HELKLI 144
I N+ + + ++ WR E+FNI+ K G ++P+ N +
Sbjct: 194 IKKNFYKESTATSAMSKVEADSWR--KENFNITWDDLKDGE-KRPIPNPTCTFDDAFQCY 250
Query: 145 PEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIP 204
PE + NI + +PT IQ P V+ D IGVA TG+GKTL +L+P I L P
Sbjct: 251 PEVMENI--KKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQP 308
Query: 205 PLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR 264
L + + P LVL PTRELA Q++ E K + V + GG + +E L+
Sbjct: 309 SLKG--QRNRPGMLVLTPTRELALQVEGE---CCKYSYKGLRSVCVYGGGNRDEQIEELK 363
Query: 265 DGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR 324
G DI++ATPGR K + LVLDEADKM+D GFE Q+ IL +R
Sbjct: 364 KGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRP--DR 421
Query: 325 QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEEEKLKILVKD 382
QT+M +AT+ ++ ++A YLK+P V VG + + +KQ + V EEEK + +
Sbjct: 422 QTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNI-IVTTEEEKWSHM-QT 479
Query: 383 FLPNYKAP--IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVD 440
FL + + +I+F++ K AD L L +LHG + Q RE +L + GKV
Sbjct: 480 FLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVR 539
Query: 441 ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
ILIATD+A RG+D+ +V+ V N FP++ + +VHR+
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRI 575
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 194 bits (494), Expect = 2e-49
Identities = 121/344 (35%), Positives = 180/344 (52%), Gaps = 16/344 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
++ P+ IQ + P + NRD + +A TGSGKTL +L+P + L I + + GP
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM----GPTI 304
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LVL+PTRELA QIQ E K K C + GG + G DI+VATPGR
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISC--ACLYGGAPKGPQLKEIERGVDIVVATPGRL 362
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
QV+ LVLDEAD+M+D GFE Q+ I+ + T RQT+M+TAT+ +
Sbjct: 363 NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT--KRQTLMYTATWPKEV 420
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVP-----DEEEKLKILVKDFLPNYKAPII 392
K+A L P+ V +G + K I + + ++ +L+ +++ P K II
Sbjct: 421 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK--II 478
Query: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452
IF + KR D L L F A +HG KSQ +R+ L+ R+G+ +L+ATDVA RG+
Sbjct: 479 IFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGL 537
Query: 453 DIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
D+ ++ +VVN FP + +VHR+ F +++
Sbjct: 538 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 194 bits (492), Expect = 4e-49
Identities = 132/393 (33%), Positives = 198/393 (49%), Gaps = 25/393 (6%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLH---YNEPTSIQRSTIPNVINNR 176
+D + + G + N+ ++ D+ II ++ Y PT +Q+ IP + R
Sbjct: 162 DDIPVEATGSNCPPHIENFSDI-----DMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKR 216
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI--TKHDG--------PLALVLAPTREL 226
D + A TGSGKT AFLLPIL +++ P ++ K +G P++LVLAPTREL
Sbjct: 217 DLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTREL 276
Query: 227 AQQIQHEGQSITKLWK-RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXX 285
A QI E + + + RPC + GG + + +L GC +LVATPGR
Sbjct: 277 AVQIYEEARKFSYRSRVRPC---VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 333
Query: 286 XXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN--RQTMMFTATFSPTIEKVANG 343
LVLDEAD+M+D GFE Q+ I+ + R TMMF+ATF I+ +A
Sbjct: 334 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 393
Query: 344 YLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTAD 402
+L + ++ VG S + I Q V +V D +++ +L + ++F+ K+ AD
Sbjct: 394 FLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGAD 453
Query: 403 WLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVN 462
L D L + T++HG +SQ RE +L R+GK IL+AT VA RG+DI NV V+N
Sbjct: 454 SLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVIN 513
Query: 463 LQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEE 495
P + +VHR+ F E+
Sbjct: 514 FDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 546
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 192 bits (488), Expect = 1e-48
Identities = 143/473 (30%), Positives = 236/473 (49%), Gaps = 60/473 (12%)
Query: 38 SKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNY 97
+KA +I+ +D+ + E + ++ S + DD F+ R +KK + E S+VD+
Sbjct: 296 NKAALGRIIQGEDSDSDYSEPKS-DDDPSLDEDDEEFMKR-----VKKTKAEKLSLVDHS 349
Query: 98 LGKHWSEKKYEEMSTRDWRILSED--------FNISSKGGTVEKPLRNWHELKLIPEDLL 149
++ +K + +D +++D + G V +P++ WH+ L + L
Sbjct: 350 KIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILD 409
Query: 150 NIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI 209
+ L+Y +P IQ +P +++ RD IGVA TGSGKTL F+LP+L + PP+ +
Sbjct: 410 TL--KKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA- 466
Query: 210 TKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDI 269
DGP+ LV+APTREL QQI + + +K C V + GG + + + L+ G +I
Sbjct: 467 --GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC--VPVYGGSGVAQQISELKRGTEI 522
Query: 270 LVATPGRXXX---XXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQT 326
+V TPGR ++V LV+DEAD+M D GFE Q+T I+ +RQT
Sbjct: 523 VVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR--PDRQT 580
Query: 327 MMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLP 385
++F+ATF +E +A L KP + VGG K I Q+V P+ E ++L + L
Sbjct: 581 VLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLL--ELLG 638
Query: 386 NY--KAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
+ K +++F+ +SQE+ S+S ++ ++LI
Sbjct: 639 EWYEKGKVLVFV--------------------------RSQEK---SISDFKSDVCNLLI 669
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
AT VA RG+D+ + LVVN P ++ +VHRV F++E++
Sbjct: 670 ATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 722
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 192 bits (487), Expect = 1e-48
Identities = 125/351 (35%), Positives = 181/351 (50%), Gaps = 17/351 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSIT--KHDG- 214
Y PT +Q+ IP + RD + A TGSGKT AFLLPIL +++ P ++ K +G
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 215 -------PLALVLAPTRELAQQIQHEGQSITKLWK-RPCNIVSIVGGHSLEEISANLRDG 266
P++LVLAPTRELA QI E + + + RPC + GG + + +L G
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC---VVYGGADIGQQIRDLERG 316
Query: 267 CDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN--R 324
C +LVATPGR LVLDEAD+M+D GFE Q+ I+ + R
Sbjct: 317 CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVR 376
Query: 325 QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDF 383
TMMF+ATF I+ +A +L + ++ VG S + I Q V +V + +++ +L
Sbjct: 377 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLN 436
Query: 384 LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
+ ++F+ K+ AD L D L + T++HG +SQ RE +L R+GK IL+
Sbjct: 437 ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 496
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE 494
AT VA RG+DI NV V+N P + +VHR+ F E
Sbjct: 497 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 191 bits (486), Expect = 2e-48
Identities = 132/450 (29%), Positives = 212/450 (46%), Gaps = 19/450 (4%)
Query: 58 DELYEEQVSNEPDDLLFLARKSADL-----LKKRQNEDESIVDNYLGKHWSEKKYEEMST 112
DE ++++ + D K D+ + + E E N+ +H ++
Sbjct: 189 DEGSDQEIEYDEDGNPIAPPKKKDIDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDEQV 248
Query: 113 RDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNV 172
R+ R + G + KP+ ++ E L+ + Y +PT IQ +P
Sbjct: 249 RELR---RTLGVKVTGPSPPKPVTSFGHFGF-DEQLIKAVRK-AEYTQPTPIQAQAVPTA 303
Query: 173 INNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQH 232
++ RD IG+A TGSGKT AF+ P+L+ + + DGP+ L+LAPTREL+ QI +
Sbjct: 304 LSGRDIIGIAKTGSGKTAAFIWPMLMH---VMDQKQLKPGDGPIGLILAPTRELSLQIYN 360
Query: 233 EGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVN 292
E + K++ N+V GG S E S L G +I+VATPGR ++V
Sbjct: 361 EAKKFGKVYN--LNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVT 418
Query: 293 TLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVT 352
LVLDEAD+M GFE Q+ +I +RQ +MF+ATF IE++A L P +
Sbjct: 419 FLVLDEADRMFHMGFEPQVRSICNHVRP--DRQCLMFSATFKKRIERLARDVLSDPVRIV 476
Query: 353 VGG-EESKPKIKQIVRYVPDEEEKLKILVKDFLPNY-KAPIIIFINYKRTADWLFDKLRE 410
G E+ I Q V P+ +K L+ + + ++IF+ K A+ + + L
Sbjct: 477 QGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLI 536
Query: 411 ARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFD 470
+ LHG Q R ++ + + DIL+ATDVA RG+DIP++ VVN + +
Sbjct: 537 KEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIE 596
Query: 471 SFVHRVXXXXXXXXXXXXXXFLTEEEDHSA 500
+ HR+ +T+++ A
Sbjct: 597 THTHRIGRTGRAGEKGNAYTLVTDKDKEFA 626
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 190 bits (483), Expect = 4e-48
Identities = 115/345 (33%), Positives = 178/345 (51%), Gaps = 9/345 (2%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y +PT IQ +P ++ RD IG+A TGSGKT AF+ P+LI I + DGP+A
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH---IMDQKELEPGDGPIA 210
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
+++ PTREL QQI E + K + V++ GG S+ E + L++G +I+V TPGR
Sbjct: 211 VIVCPTRELCQQIHAECKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL 268
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++V+ LV DEAD+M D GFE Q+ +I + +RQT++F+ATF I
Sbjct: 269 IDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP--DRQTLLFSATFRKKI 326
Query: 338 EKVANGYLKKPSYVTVGG-EESKPKIKQIVRYVPDEEEKLKILVKDFLP-NYKAPIIIFI 395
EK+A L P V G E+ + QIV + K L + + +++F+
Sbjct: 327 EKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFV 386
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
K A+ L + L++ LHG Q +R +S + + +L+ATDVA RG+DIP
Sbjct: 387 TKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIP 446
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSA 500
++ V+N + D+ HR+ LT ++ + A
Sbjct: 447 SIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA 491
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 190 bits (482), Expect = 5e-48
Identities = 141/479 (29%), Positives = 226/479 (46%), Gaps = 50/479 (10%)
Query: 57 EDELYE------EQVSNEPDD------LLFLARKSADLLKKRQNEDESIVDNYLGKHWSE 104
ED+L+E E V + D+ A+K + E E N+ + +
Sbjct: 166 EDQLFELGGTDDEDVEDNTDNSNIAKIAKLKAKKRVKQIYYSPEELEPFQKNFYIESETV 225
Query: 105 KKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSI 164
EM + R+ + NI KG KP+ W +L L D + +IT LH+ T I
Sbjct: 226 SSMSEMEVEELRLSLD--NIKIKGTGCPKPVTKWSQLGL-STDTMVLITEKLHFGSLTPI 282
Query: 165 QRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHD-GPLALVLAPT 223
Q +P +++ RD IG++ TGSGKT+++LLP+L ++ PL +KH+ GP+ L+LAPT
Sbjct: 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPL---SKHETGPMGLILAPT 339
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSI--VGGHSLEEISANLRDGCDILVATPGR---XX 278
RELA QI E +TK + +I S+ GG +++ +L+ G +I+VATPGR
Sbjct: 340 RELALQIHEE---VTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDIL 396
Query: 279 XXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIE 338
K++ +V+DEAD++ D GFE Q+T I+ ++Q ++F+ATF +
Sbjct: 397 TLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVR--PDKQCVLFSATFPNKLR 454
Query: 339 KVANGYLKKPSYVTVGGEES-KPKIKQIVRYVPDEEEKLKILVK------DFLPNYK--- 388
A L P +T+ + +KQ R E+EK LV+ +F +
Sbjct: 455 SFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSEN 514
Query: 389 -----------APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNG 437
A IIF++ + D++ KL A +H K ++R +L +
Sbjct: 515 DGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKRE 574
Query: 438 KVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
K IL+ T+V RG+++P VSLV+ K+F +VH L +E
Sbjct: 575 KNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDE 633
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 189 bits (480), Expect = 9e-48
Identities = 158/536 (29%), Positives = 250/536 (46%), Gaps = 46/536 (8%)
Query: 25 KKRTFPQPEEEEASKALSHTVIKRKDNY----------------RNLDEDELYEEQVSNE 68
K R F E + +KA T+I+++++Y RNL +++ E E
Sbjct: 92 KVRIFGNREMKAKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGRNDIVGEA---E 148
Query: 69 PDDLLFLARKSADLLKKRQNED-ESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNI--- 124
P R + +KR+ D + N+ + + EM +WR E+FNI
Sbjct: 149 PLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWR--KENFNITCD 206
Query: 125 ---SSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGV 181
S + + KP + + DLL I + +PT IQ P ++ D I V
Sbjct: 207 DLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIR-VGIVKPTPIQSQAWPIILQGIDLIVV 265
Query: 182 ASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLW 241
A TG+GKTL++L+P I L P S + +GP LVL PTRELA ++ E +K
Sbjct: 266 AQTGTGKTLSYLMPGFIHLDSQPI--SREQRNGPGMLVLTPTRELALHVEAE---CSKYS 320
Query: 242 KRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADK 301
+ + I GG + ++ G DI++ATPGR + + LV+DEADK
Sbjct: 321 YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 380
Query: 302 MIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE--SK 359
M+D FE Q+ IL +RQT+M +AT+ T+ ++A YLK P V VG +
Sbjct: 381 MLDMEFEPQIRKILLDVRP--DRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAV 438
Query: 360 PKIKQIVRYVPDEEEKLKILVKDFLPNYKA--PIIIFINYKRTADWLFDKLREARFRATT 417
+KQ + V E+EK + L ++F+ N +I+F++ K AD L A +
Sbjct: 439 NTVKQNI-IVTTEKEK-RALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAES 496
Query: 418 LHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
LHG+ Q +E ++ ++G + ILI TD+ RG+D+ +V+ V N FP++ D +VHRV
Sbjct: 497 LHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVG 556
Query: 478 XXXXXXXXXXXXXFLTEEEDHSA--MAKLFDYVKKNDFTGENYISKEAMSKYNVDK 531
+T+ + A + K+ D + N E+ + K N K
Sbjct: 557 YIGRTGKTGTSVTLITQRDSKMAGELIKILD--RANQSVPEDLVVMAEQYKLNQQK 610
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 188 bits (477), Expect = 2e-47
Identities = 138/467 (29%), Positives = 223/467 (47%), Gaps = 44/467 (9%)
Query: 46 IKRKDNYRNLD-EDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSE 104
I +KD ++ + + EE + ++ +A+ + + DE D Y+ KH
Sbjct: 94 ISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHNDEEAYDRYIKKHNIS 153
Query: 105 KKYEEMSTRDWRILS-EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTS 163
+ S IL ++ ++S+K + + L+N Y EPT
Sbjct: 154 FADPKSSENLLPILQFDELDVSAK---LREGLKN--------------------YKEPTP 190
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPT 223
IQ +T P ++ RD +G+A TGSGKT+AF +P L L+G+ S+ P LV++PT
Sbjct: 191 IQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV-----PRVLVVSPT 245
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXX 283
RELA Q S+ + V + GG E A +++ TPGR
Sbjct: 246 RELAIQTYENLNSL--IQGTNLKAVVVYGGAPKSE-QARAAKNASVIIGTPGRLLDLIND 302
Query: 284 XXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS---NRQTMMFTATFSPTIEKV 340
QV LVLDEAD+M+D GFE + I++ T + +RQT+ F+AT+ ++ +
Sbjct: 303 GSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRAL 362
Query: 341 ANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKA-----PIII 393
A +LK P +T+G +E + I QIV + D K ++L + + I+I
Sbjct: 363 AATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILI 422
Query: 394 FINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGID 453
F+ YK+ A + L ++ +HG SQ R +L+ ++GK +L+ATDVA RG+D
Sbjct: 423 FVLYKKEAARVEGTLAR-KYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLD 481
Query: 454 IPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSA 500
IP V LV+N+ FP + + +VHR+ F T ++ A
Sbjct: 482 IPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHA 528
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 186 bits (471), Expect = 1e-46
Identities = 134/385 (34%), Positives = 196/385 (50%), Gaps = 24/385 (6%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHD---- 213
+ +P+ IQ P +++ +D IGV+ TGSGKTLAFLLP L LH L K+D
Sbjct: 104 FEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPAL--LHIDAQLAQYEKNDEEQK 161
Query: 214 -GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVA 272
P LVL+PTRELAQQI+ E + K V + GG S E R G +I++A
Sbjct: 162 PSPFVLVLSPTRELAQQIEGE---VKKYSYNGYKSVCLYGGGSRPEQVEACRGGVEIVIA 218
Query: 273 TPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTAT 332
TPGR V +VLDEAD+M+D GFE + IL E +R + +AT
Sbjct: 219 TPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILF--EIRPDRLVALTSAT 276
Query: 333 FSPTIEKVANGYLKKPSYVTVGGEE--SKPKIKQIVRYVPDEEEKLKIL-VKDFLP---- 385
+ + K+ + Y K+ G + S + Q +VP + L++ + +FL
Sbjct: 277 WPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHG 336
Query: 386 -NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
NYK +IIF+ K AD L + LHG +SQ RE SL++LR+G+V IL+A
Sbjct: 337 QNYK--MIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVA 394
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
TD+A RGID+P+++ V+N FP + +VHRV FL D S L
Sbjct: 395 TDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLW-WNDRSNFEGL 453
Query: 505 FDYVKKNDFTGENYISKEAMSKYNV 529
++K++ + + ++A KY +
Sbjct: 454 IQILEKSEQEVPDQLRRDA-EKYRL 477
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 184 bits (468), Expect = 2e-46
Identities = 127/371 (34%), Positives = 192/371 (51%), Gaps = 21/371 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
E+ + G +V + +++E P + N+ N Y++PT +Q+ +IP ++ NRD +
Sbjct: 107 ENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV--NRSGYSKPTPVQKHSIPTLLANRDLM 164
Query: 180 GVASTGSGKTLAFLLPILIKLHG-------IPPLNSITKHDGPLALVLAPTRELAQQIQH 232
A TGSGKT AFLLPI+ + P + + P ALVL+PTRELA QI
Sbjct: 165 SCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHK 224
Query: 233 EGQSITKLWKRPCNIVSIVGGHSLEEISAN-LRDGCDILVATPGRXXXXXXXXXXXXKQV 291
E + +K + GG N LR G IL+ATPGR
Sbjct: 225 EATKFS--YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGC 282
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAK-TETISNRQTMMFTATFSPTIEKVANGYLKKPSY 350
LVLDEAD+M+D GFE Q+ I+ + + R T MF+ATF I+ +A +LK
Sbjct: 283 RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYI 342
Query: 351 VTVGGE--ESKPKIKQIVRYVPDEEEK---LKILVKDFLPNYKAPIIIFINYKRTADWLF 405
G + I+Q + +V + E++ ++IL+ + N +++F+ KR A+ L
Sbjct: 343 FLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENL---VLVFVETKRGANELA 399
Query: 406 DKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQF 465
L + R+ ++HG Q +RE +L L R+G+ IL+AT VA RG+DIPNV V+N
Sbjct: 400 YFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDL 459
Query: 466 PKSFDSFVHRV 476
P D +VHR+
Sbjct: 460 PGDSDEYVHRI 470
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 184 bits (468), Expect = 2e-46
Identities = 127/371 (34%), Positives = 192/371 (51%), Gaps = 21/371 (5%)
Query: 120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFI 179
E+ + G +V + +++E P + N+ N Y++PT +Q+ +IP ++ NRD +
Sbjct: 104 ENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV--NRSGYSKPTPVQKHSIPTLLANRDLM 161
Query: 180 GVASTGSGKTLAFLLPILIKLHG-------IPPLNSITKHDGPLALVLAPTRELAQQIQH 232
A TGSGKT AFLLPI+ + P + + P ALVL+PTRELA QI
Sbjct: 162 SCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHK 221
Query: 233 EGQSITKLWKRPCNIVSIVGGHSLEEISAN-LRDGCDILVATPGRXXXXXXXXXXXXKQV 291
E + +K + GG N LR G IL+ATPGR
Sbjct: 222 EATKFS--YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGC 279
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAK-TETISNRQTMMFTATFSPTIEKVANGYLKKPSY 350
LVLDEAD+M+D GFE Q+ I+ + + R T MF+ATF I+ +A +LK
Sbjct: 280 RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYI 339
Query: 351 VTVGGE--ESKPKIKQIVRYVPDEEEK---LKILVKDFLPNYKAPIIIFINYKRTADWLF 405
G + I+Q + +V + E++ ++IL+ + N +++F+ KR A+ L
Sbjct: 340 FLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENL---VLVFVETKRGANELA 396
Query: 406 DKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQF 465
L + R+ ++HG Q +RE +L L R+G+ IL+AT VA RG+DIPNV V+N
Sbjct: 397 YFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDL 456
Query: 466 PKSFDSFVHRV 476
P D +VHR+
Sbjct: 457 PGDSDEYVHRI 467
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 184 bits (466), Expect = 4e-46
Identities = 136/470 (28%), Positives = 227/470 (47%), Gaps = 24/470 (5%)
Query: 33 EEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKK---RQNE 89
+EE+ ++L + + K+ + N DE Y+E ++++ +K D L Q +
Sbjct: 167 DEEDMQESLFKFMEEYKEKHENDDEQLEYDED-----GNIIWSWKKVIDPLPDIDHSQIQ 221
Query: 90 DESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLL 149
+ N+ +H K+ M D L N+ G +P+ ++ + LL
Sbjct: 222 YQKFNKNFYEEHEDIKRLHYM---DVIRLQNTMNLRVGGLKPPRPVCSFAHFSF--DKLL 276
Query: 150 NIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI 209
Y +PT IQ IP+ ++ RD +G+A TGSGKT A+L P ++ + P L +
Sbjct: 277 MEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA- 335
Query: 210 TKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR-DGCD 268
+GP+A+++ PTRELA Q+ E + K++ N + GG S E S L+ +G +
Sbjct: 336 --GEGPVAVIVVPTRELAIQVFQEAKKFCKVYN--INPICAYGGGSKWEQSNELQNEGAE 391
Query: 269 ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMM 328
++V TPGR + LV DEAD+M D GFE Q+ +I +RQ +M
Sbjct: 392 MVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSI--SDHVRPDRQCLM 449
Query: 329 FTATFSPTIEKVANGYLKKPSYVTVGG-EESKPKIKQIVRYVPDEEEKLKILVKDFLPNY 387
F+ATF +E++A L P + G E+ I+Q V + +++ KL L+++ +
Sbjct: 450 FSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFA 509
Query: 388 K-APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATD 446
++IF+ K ++ + KL+ F LHG Q +R +L R K IL+ATD
Sbjct: 510 SLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATD 568
Query: 447 VAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
VA RG+DI + V+N + D+ VHR+ +TE++
Sbjct: 569 VAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKD 618
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 178 bits (452), Expect = 2e-44
Identities = 117/347 (33%), Positives = 179/347 (50%), Gaps = 10/347 (2%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKL-HGIPPLNSITKHDGPL 216
Y + T +Q+ +IP ++ RD + A TGSGKT AFLLPIL + H + + P
Sbjct: 308 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE 367
Query: 217 ALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGR 276
+++APTREL QI E + + + V I GG L + GC+IL ATPGR
Sbjct: 368 CIIVAPTRELVNQIYLEARKFS--FGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGR 425
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN--RQTMMFTATFS 334
KQ+ LVLDEAD+M+D GF ++ +++ S RQT+MF+ATF
Sbjct: 426 LMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFP 485
Query: 335 PTIEKVANGYLKKPS-YVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLPNY-KAPI 391
I+++A +LK +V VG + ++Q V V ++ K++ + L N
Sbjct: 486 EEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLV--EILRNIGDERT 543
Query: 392 IIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRG 451
++F+ K+ AD++ L + + T++HG + Q +RE +L R GK +L+AT VA RG
Sbjct: 544 MVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARG 603
Query: 452 IDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDH 498
+DI NV V+N P + D +VHR+ F E D+
Sbjct: 604 LDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDN 650
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 176 bits (447), Expect = 6e-44
Identities = 131/475 (27%), Positives = 225/475 (46%), Gaps = 22/475 (4%)
Query: 25 KKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLK 84
KK F EEE+ + + VI + + + E F KS+ +
Sbjct: 37 KKVNFFVEEEEDTEQPEAEKVIVSSKKRKRRSSNSVPVEG---------FDVFKSSKKAR 87
Query: 85 KRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLI 144
+ +E I N + ++ +K+ RD + + ++I G + PL+++ EL
Sbjct: 88 AKGKAEEQITKNEIVEN-PKKELNRQMERD-ALSRKQYSIHVSGNNIPPPLKSFAELSSR 145
Query: 145 PEDLLNIITN--DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHG 202
I+ N +L + EPT IQR IP +++ R+ A TGSGKT AF+ P+LIKL
Sbjct: 146 YGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLK- 204
Query: 203 IPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISAN 262
LN DG A++L+P RELA Q EG+ + K +++ L + +
Sbjct: 205 --VLNCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADF 258
Query: 263 LRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS 322
+ CD+L++TP R +V LVLDE+DK+ + Q+ ++ S
Sbjct: 259 SKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPS 318
Query: 323 NRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVK 381
+++ F+AT ++E++A + V +G + + + +KQ + + EE KL L +
Sbjct: 319 IIRSL-FSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQ 377
Query: 382 DFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDI 441
F + P++IF+ K A L+D+L+ RA +H +RE+++ R G+ +
Sbjct: 378 SFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWV 437
Query: 442 LIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
LIATDV RG+D ++ V+N FP S +++HR+ F TE++
Sbjct: 438 LIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 492
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 175 bits (443), Expect = 2e-43
Identities = 127/350 (36%), Positives = 181/350 (51%), Gaps = 22/350 (6%)
Query: 132 EKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLA 191
++ ++ EL L+PE L+ N L+Y++PT IQ IP + D IG+A TGSGKT A
Sbjct: 119 DESFESFSELNLVPE-LIQACKN-LNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAA 176
Query: 192 FLLPILIKL-HGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI 250
F +PIL +L H P A +LAPTRELAQQI+ S+ L I
Sbjct: 177 FAIPILNRLWHDQEPY---------YACILAPTRELAQQIKETFDSLGSLMG--VRSTCI 225
Query: 251 VGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFED 309
VGG ++ + + +L I++ATPGR +++ LV+DEAD+++D F
Sbjct: 226 VGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGP 285
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGE-ESKPKIKQIVRY 368
L IL T R T +F+AT + I+K+ L P V + ++ + Q +
Sbjct: 286 VLDRILKIIPT-QERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMV 344
Query: 369 VPD--EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQ 426
VP + L L+ +F+ +IIF K A+ L F AT LHG +Q Q
Sbjct: 345 VPGGLKNTYLIYLLNEFIGK---TMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQ 401
Query: 427 REHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
R SL L + GK IL+ATDVA RG+DIP+V +VVN P S++HRV
Sbjct: 402 RMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRV 451
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 175 bits (443), Expect = 2e-43
Identities = 134/435 (30%), Positives = 230/435 (52%), Gaps = 36/435 (8%)
Query: 61 YEEQVSNEPD-DLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKK--------YEE-- 109
Y E + ++ D D+ L K+ LL+ ++ E++S + N K SE + Y+E
Sbjct: 114 YGEYICDKTDEDVCSLECKAKHLLQVKEKEEKSKLSNPQ-KADSEPESPLNASYVYKEHP 172
Query: 110 --MSTRDWRI--LSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQ 165
++ ++ +I L + I +G V +P+ ++ L ++LN Y PT IQ
Sbjct: 173 FILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSL--PEVLNHNLKKSGYEVPTPIQ 230
Query: 166 RSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRE 225
IP + RD + A TGSGKT AFLLP++++ ++ + P AL+L PTRE
Sbjct: 231 MQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR--------ALFESKTPSALILTPTRE 282
Query: 226 LAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXX 285
LA QI+ + + + R V +VGG L L+ +++ATPGR
Sbjct: 283 LAIQIERQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSS 341
Query: 286 XXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR-QTMMFTATFSPTIEKVANGY 344
V +V+DEAD M+ GF+ Q+ IL E I N QT++ +AT +IE++A+
Sbjct: 342 VELCGVKIVVVDEADTMLKMGFQQQVLDIL---ENIPNDCQTILVSATIPTSIEQLASQL 398
Query: 345 LKKPSYVTVGGEESKP--KIKQIVRYVPDEEEKLKIL-VKDFLPNYKAPIIIFINYKRTA 401
L P + + GE++ P ++QI+ +V D +K K+ + + +K P+++F++ K A
Sbjct: 399 LHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGA 457
Query: 402 DWLFDKLREAR-FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLV 460
D L + +++ ++ ++H KSQ +R++ L L G +++++T V GRG+D+ +V LV
Sbjct: 458 DLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLV 517
Query: 461 VNLQFPKSFDSFVHR 475
VN P S D +VH+
Sbjct: 518 VNFDMPSSMDEYVHQ 532
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 174 bits (440), Expect = 4e-43
Identities = 126/381 (33%), Positives = 185/381 (48%), Gaps = 22/381 (5%)
Query: 140 ELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIK 199
EL + PE + + + + P IQ++ + + RD IG A TG+GKTLAF +PI+ K
Sbjct: 108 ELGISPEIVKALSSKGIEKLFP--IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 165
Query: 200 LHGIPPLNSITKHD---GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSL 256
+ + KH PL LVLAPTRELA+Q++ E + C + GG +
Sbjct: 166 I-----IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC----LYGGTPI 216
Query: 257 EEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILA 316
+ L G D+ V TPGR +V +VLDEAD+M+ GF + + IL
Sbjct: 217 GQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILE 276
Query: 317 KTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRY--VPDEEE 374
K RQ+MMF+AT I + YL P V + G+ + I Y + D
Sbjct: 277 KLP--EKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYG 334
Query: 375 KLKILVKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSL 433
+ I+ + K I+F KR AD L L + F+ LHG SQ QRE +L+
Sbjct: 335 RASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAG 393
Query: 434 LRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLT 493
R+G +IL+ATDVA RG+D+PNV L+++ + P + ++FVHR L
Sbjct: 394 FRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHR--TGRTGRAGKKGSAILI 451
Query: 494 EEEDHSAMAKLFDYVKKNDFT 514
+D S K+ + + FT
Sbjct: 452 YSQDQSRAVKIIEREVGSRFT 472
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 173 bits (438), Expect = 7e-43
Identities = 145/502 (28%), Positives = 244/502 (47%), Gaps = 31/502 (6%)
Query: 23 LIKKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVS-----NEPDDLLFLAR 77
L+K +EEE K V K D+ D++EL + N D+
Sbjct: 120 LVKMAHIDSKQEEETEK---EKVEKENDS----DDEELAMDGFGMGAPMNNGDENQSEEE 172
Query: 78 KSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPL-R 136
+ + ++ + E+E + L K + + +E + ++ + ++G +K +
Sbjct: 173 EEEEEKEEEEEEEEEQEEMTLEKGGKDDEIDEEDDSE-EAKADFYAPETEGDEAKKQMYE 231
Query: 137 NWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPI 196
N++ L L L + + L Y +P+ IQ +TIP + +D I A TGSGKT AF++PI
Sbjct: 232 NFNSLSLSRPVLKGLAS--LGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPI 289
Query: 197 LIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSL 256
+ +L P + T+ +VL PTRELA Q+ G+ I + + VGG +L
Sbjct: 290 IERLLYKPAKIASTR-----VIVLLPTRELAIQVADVGKQIAR-FVSGITFGLAVGGLNL 343
Query: 257 EEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTIL 315
+ L+ DI++ATPGR V LV+DEAD+M++ GF+D+L I+
Sbjct: 344 RQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIM 403
Query: 316 AKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGG-EESKPKIKQ-IVRYVPDEE 373
SNRQ ++F+AT + I+ + + LKKP + + +++ K+ Q VR +
Sbjct: 404 GLLP--SNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDH 461
Query: 374 EKLKIL---VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHS 430
K +L ++ P + I++F+ K TA L + LHGS +QEQR S
Sbjct: 462 LKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDS 521
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXX 490
++ +N +V +LI TD+A RG+DIP + +V+N PKS++ ++HRV
Sbjct: 522 VNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT 581
Query: 491 FLTE-EEDHSAMAKLFDYVKKN 511
F+ E +D S + V++N
Sbjct: 582 FVGESSQDRSIVRAAIKSVEEN 603
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 170 bits (431), Expect = 4e-42
Identities = 115/317 (36%), Positives = 166/317 (52%), Gaps = 16/317 (5%)
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPT 223
IQ++ + + RD IG A TG+GKTLAF +PI+ K+ + K+ P LVLAPT
Sbjct: 142 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKN--PQCLVLAPT 199
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXX 283
RELA+Q++ E + C + GG + + L G D+ V TPGR
Sbjct: 200 RELARQVEKEFRESAPSLDTIC----LYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKR 255
Query: 284 XXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANG 343
+V +VLDEAD+M+ GF + + IL K + RQ+MMF+AT I +
Sbjct: 256 GALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLP--AKRQSMMFSATMPSWIRSLTKK 313
Query: 344 YLKKPSYVTVGGEESKPKIKQIVRY--VPDEEEKLKI---LVKDFLPNYKAPIIIFINYK 398
YL P + + G+ + I Y D + I LVK+ K I+F K
Sbjct: 314 YLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKC--IVFTQTK 371
Query: 399 RTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVS 458
R AD L L ++ ++ LHG SQ QRE +L+ R+G IL+ATDVA RG+D+PNV
Sbjct: 372 RDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVD 430
Query: 459 LVVNLQFPKSFDSFVHR 475
LV++ + P + ++FVHR
Sbjct: 431 LVIHYELPNNTETFVHR 447
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 170 bits (430), Expect = 6e-42
Identities = 153/563 (27%), Positives = 255/563 (45%), Gaps = 92/563 (16%)
Query: 9 DLISDTVPAKKPRFLIKKRTFP-----QPEEEEASKALSHTVIKRKDNYRNLDEDELYEE 63
+ + D ++KP L R + + ++ S S + +KR D Y+
Sbjct: 9 NFVVDNAQSRKPEALKSSRRWTDRARDRKRQKRNSNESSKSTVKRNSGTNGASTD--YKN 66
Query: 64 QVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLG---KHWSEKKYEEMSTRDWRILSE 120
+ + +F RK A LK + ++ + + G +H+S+ + + E
Sbjct: 67 SQKEKVINPVFDPRKPAHELKGNKRDNTFVTSLFTGDDSEHFSQDVGQNL---------E 117
Query: 121 DFNISSKGGTVEK---PLRNWHELKL-IPEDLLNIITNDLHYNEPTSIQRSTIPNVIN-- 174
D IS+ G T E P++ + + + L + + N ++ + PT+IQ +P ++N
Sbjct: 118 DNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTD 177
Query: 175 NRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEG 234
++D A TGSGKTLA+LLPI+ +L +P N T+ G A+++APTREL QQI +
Sbjct: 178 DKDAFIEAQTGSGKTLAYLLPIVQRLIRLPK-NLHTRTSGIYAVIMAPTRELCQQIYNVA 236
Query: 235 QSITKL----WKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-K 289
+ W CN++ GG + A +R G +IL+ TPGR
Sbjct: 237 NKLNNNPLSHWIVSCNVI---GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVS 293
Query: 290 QVNTLVLDEADKMIDFGFEDQLTTILAKTETISN-----------RQTMMFTATFSPTIE 338
QV +VLDE D+++D GFE+ LT IL+ E+ S+ + TM+ +AT T++
Sbjct: 294 QVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVK 353
Query: 339 KVANGYLKKPSYV-------TVGGEESKPKIKQIVRYVPDEEE----KLKILVKDFLPNY 387
++++ LK Y+ T G P+ + + RYV + L L++ + +Y
Sbjct: 354 RLSDSALKDALYLKSSIVEETNDGYSQAPE-QLLQRYVVVPPKLRLVSLVALLRSHVRSY 412
Query: 388 KAPIIIFINYKRTADWLFDKLR-------------------------------EARFRAT 416
K IIIF++ + D+ F+ R + +
Sbjct: 413 KK-IIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVY 471
Query: 417 TLHGSKSQEQREHSLSLLRNGKVD---ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFV 473
LHGS SQ+ R +L+L + + IL+ TDVA RG+D+PNV LVV P S D ++
Sbjct: 472 RLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYL 531
Query: 474 HRVXXXXXXXXXXXXXXFLTEEE 496
HR+ FL +E
Sbjct: 532 HRIGRTARAGHNGAAIMFLLPKE 554
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 170 bits (430), Expect = 6e-42
Identities = 136/454 (29%), Positives = 214/454 (46%), Gaps = 47/454 (10%)
Query: 49 KDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYE 108
++N EDE E S+ +++L AD LK + + + G +E
Sbjct: 159 QENDEEGSEDEASETDYSSADENIL----TKADTLKVKDRKKKKKKGQEAGGF-----FE 209
Query: 109 EMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRST 168
+ S D + +D N+S LL IT + + +PT IQ++
Sbjct: 210 DASQYDENLSFQDMNLS--------------------RPLLKAITA-MGFKQPTPIQKAC 248
Query: 169 IPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQ 228
IP + +D A+TG+GKT AF LP+L +L P +T+ LVL PTREL
Sbjct: 249 IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTR-----VLVLVPTRELGI 303
Query: 229 QIQHEGQSITKLWKRPCNIVSI--VGGHSLEEISANLRDGCDILVATPGRXXXXXXXX-X 285
Q+ S+T+ + CNI + VGG ++ A LR DIL+ATPGR
Sbjct: 304 QVH----SVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS 359
Query: 286 XXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYL 345
+ L+LDEAD+M+D FE+Q+ I+ +RQTM+F+AT + ++ +A+ L
Sbjct: 360 FHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS--HHRQTMLFSATMTDEVKDLASVSL 417
Query: 346 KKPSYVTVGGE-ESKPKIKQ-IVRYVPDEEEKLKILVKDFLPN-YKAPIIIFINYKRTAD 402
K P + V + P ++Q +R P+ E + +V L + +++F K+ A
Sbjct: 418 KNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAH 477
Query: 403 WLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVN 462
+ L + LHG+ SQ QR +L ++ ++DIL+ATDVA RG+DI V V+N
Sbjct: 478 RMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN 537
Query: 463 LQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
P + +VHRV + E+E
Sbjct: 538 FTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 169 bits (428), Expect = 1e-41
Identities = 144/510 (28%), Positives = 242/510 (47%), Gaps = 42/510 (8%)
Query: 49 KDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYE 108
K + L E +EE V +E D + D+ + R + +S + K KK +
Sbjct: 27 KQQLQPLPEVSKHEEPVKSEESD-----KDDEDITEFRLLDGDS---SNQPKRKKPKKEK 78
Query: 109 EMSTRDWRI--LSEDFNISSK-------GGTVEKPLRNW----HELKLIPEDLLNIITND 155
+S ++ I +E+ N + K G V P+ ++ + K++P N+++ +
Sbjct: 79 TLSPKELEIQKAAEEANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRN 138
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
++ PT IQ +P ++ R + A TGSGKTLAFL PI+ L K G
Sbjct: 139 --FDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRA-------HKTTGL 189
Query: 216 LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPG 275
ALVLAPTRELAQQI E +T+ + +S V + ++ A + DILV+TP
Sbjct: 190 RALVLAPTRELAQQIYRECAELTRETGLRTHFISKVS-EAKQKHGAECKQRYDILVSTPN 248
Query: 276 RXXXXXXXX--XXXXKQVNTLVLDEADKMIDFG---FEDQLTTILAKTETISNRQTMMFT 330
R V VLDEAD++++ G F++QL I A + F+
Sbjct: 249 RVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSN-PTKCVAFFS 307
Query: 331 ATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFL-PNYK 388
AT++ + K A +LK +T+G + S + ++Q + +V E KL + ++D + +
Sbjct: 308 ATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKL-VAIRDLVRQGLQ 366
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
P+++F+ K A LF++L +H +SQ QR++ + R G + +LI T++
Sbjct: 367 PPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELM 426
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYV 508
GRGID V+LV+N FP + S++HR+ F T +ED S + + +
Sbjct: 427 GRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFT-QEDTSNLRGIALII 485
Query: 509 KKNDFTGENY-ISKEAMSKYNVDKSSYKPI 537
K + T Y + + + K + KP+
Sbjct: 486 KNSGGTVPEYMLQMKKVRKSEAKMRAKKPL 515
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 169 bits (427), Expect = 1e-41
Identities = 141/476 (29%), Positives = 221/476 (45%), Gaps = 36/476 (7%)
Query: 8 DDLISDTVPAKKPRFLIKKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSN 67
DD + P+++ ++ +E+ A I ++ + DE E S
Sbjct: 146 DDEFPSSFPSEEELQEPEQENIDSDDEDLAIDGFGAGAIAENEDESSQDESE------SE 199
Query: 68 EPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSK 127
E DD+ A++ + N D + G SE+ EE++ ++ +E S
Sbjct: 200 EEDDITEPVPSFANISTQDFNSDSAA-----GSSDSEEDEEEIAKKN-AFFAEGDKEKSM 253
Query: 128 GGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSG 187
T ++ + + I + L N L + PT IQ TIP + +D +G A TGSG
Sbjct: 254 MTTTHSSFQSMNLSRPILKGLSN-----LGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 188 KTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI 247
KT AF++PIL +L P T+ L+L PTRELA Q I +
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTR-----VLILCPTRELAMQCHSVATKIASF--TDIMV 361
Query: 248 VSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFG 306
+GG SL+ LR DI++ATPGR + + +V+DEAD+M++ G
Sbjct: 362 CLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDG 421
Query: 307 FEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKI--KQ 364
F D+L I+ +RQTM+F+AT + ++ + L +P V V +++ K+ ++
Sbjct: 422 FADELNEIIQACP--KSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQE 479
Query: 365 IVRYVPDEE----EKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHG 420
VR P E L L K+ + IIF K A + AT +HG
Sbjct: 480 FVRVRPQRELLRPAMLIYLCKEL---FHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHG 536
Query: 421 SKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
S SQEQR +L R+GK + L+ATDVA RGIDI + +V+N + P + + ++HRV
Sbjct: 537 SLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRV 592
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 166 bits (421), Expect = 6e-41
Identities = 120/383 (31%), Positives = 186/383 (48%), Gaps = 27/383 (7%)
Query: 133 KPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAF 192
KP + + E L N+ Y++ T IQ+ +P V D + A TGSGKT AF
Sbjct: 338 KPCKTFAEANLTETMQKNVA--HAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAF 395
Query: 193 LLPILIKLHGIPPLNSITKHDG---PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVS 249
LLPI+ +L I N T +G P ++L PTRELA QI +EG+ ++ I
Sbjct: 396 LLPIMTRL--IDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA--YQTMMEIKP 451
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFE 308
+ GG ++ + G I+V T GR + VLDEAD+MID GF
Sbjct: 452 VYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFG 511
Query: 309 DQLTTILA--KTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVG----GEESKPKI 362
+ TI+ NRQT+MF+ATF ++++ A +L++ +YV + G +K +
Sbjct: 512 TDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRE-NYVMIAIDKIGAANKCVL 570
Query: 363 KQIVRYVPDEE-----EKLKILVKDFLPNYKAPI-----IIFINYKRTADWLFDKLREAR 412
++ R E+ E L I + + A + ++F++ + AD L L A+
Sbjct: 571 QEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQ 630
Query: 413 FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
A T+HG++ Q +R +L RNG +LIAT VA RG+DI V V+N P + D +
Sbjct: 631 VPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDY 690
Query: 473 VHRVXXXXXXXXXXXXXXFLTEE 495
+HR+ F++E+
Sbjct: 691 IHRIGRTGRVGNSGRATSFISED 713
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 165 bits (418), Expect = 1e-40
Identities = 129/394 (32%), Positives = 191/394 (47%), Gaps = 29/394 (7%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLN-SITKHDG 214
L Y PT IQ STIP + RD G A+TG+GKT A++LP L +L P N +IT+
Sbjct: 175 LGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITR--- 231
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI-----VGGHSLEEISANLRDGCDI 269
LVL PTREL Q+ ++ K+ C +I +GG ++ A LR DI
Sbjct: 232 --VLVLVPTRELGAQVY-------QVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDI 282
Query: 270 LVATPGRXXXXXXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMM 328
++ATPGR + L+LDEAD+M+D F +Q+ I+ RQTM+
Sbjct: 283 VIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEII--NSCCKTRQTML 340
Query: 329 FTATFSPTIEKVANGYLKKPSYVTVGGEESKP--KIKQIVRYVPDEE-EKLKILVKDFLP 385
F+AT S ++ +A L KP V V + ++ +R D+E ++ IL
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+ ++F+ K+ A L L RA LHG+ +Q+QR SL + ++D+LIAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLF 505
DVA RG+DI V V+N P + + ++HRV E+E
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVK---- 516
Query: 506 DYVKKNDFTGEN-YISKEAMSKYNVDKSSYKPII 538
D +K + T +N I E + KY +S +P I
Sbjct: 517 DIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEI 550
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 164 bits (416), Expect = 2e-40
Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 15/366 (4%)
Query: 132 EKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLA 191
++ + + ++ L PE L I + P++IQ+ I ++ RD + A +G+GKT
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYG--FERPSAIQQRAIMPILGERDVLAQAQSGTGKTAT 72
Query: 192 FLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV 251
F + +L K+ T AL+LAPTRELAQQIQ ++ L C+ + +
Sbjct: 73 FSISVLQKID--------TSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECH--ACI 122
Query: 252 GGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQL 311
GG + + A L+ G ++V TPGR V VLDEAD+M+ GF+DQ+
Sbjct: 123 GGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQI 182
Query: 312 TTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVP 370
I + Q ++ +AT + +V +++ P + V +E + IKQ V
Sbjct: 183 YDIFQLLPPTA--QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVE 240
Query: 371 DEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHS 430
EE KL L + +IF N +R DWL ++L E F +++HG Q QR+
Sbjct: 241 KEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTL 300
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXX 490
+ R G ILI TD+ RGID+ VSLV+N P + ++++HR+
Sbjct: 301 MHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSIN 360
Query: 491 FLTEEE 496
F+T ++
Sbjct: 361 FVTNDD 366
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 164 bits (416), Expect = 2e-40
Identities = 116/358 (32%), Positives = 175/358 (48%), Gaps = 25/358 (6%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG--- 214
Y + T IQ+ T+P + D + A TGSGKT AFLLPI+ +L LN T +G
Sbjct: 572 YTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLN--TAGEGGCY 629
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
P ++L PTREL QI +EG+ ++ I + GG ++ + G I+V T
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKFA--YQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTV 687
Query: 275 GRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTIL--AKTETISNRQTMMFTA 331
GR + VLDEAD+MID GF + TI+ NRQT+MF+A
Sbjct: 688 GRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSA 747
Query: 332 TFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVP--DEEEK----LKILVKDF-- 383
TF ++++ A +LK+ Y+ + ++ K +++ D EK L+IL D
Sbjct: 748 TFPDSVQEAARNHLKE-GYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDS 806
Query: 384 ------LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNG 437
Y I+F++ + AD L L A+ A T+HG++ Q +R +L RNG
Sbjct: 807 YTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNG 866
Query: 438 KVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEE 495
+LIAT VA RG+DI V V+N P + D ++HR+ F++E+
Sbjct: 867 SKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISED 924
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 164 bits (415), Expect = 3e-40
Identities = 113/343 (32%), Positives = 172/343 (49%), Gaps = 15/343 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y PT IQR T+P +++ D + +A TGSGKT AFL+P+L KL P G A
Sbjct: 48 YKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVP------QGGVRA 101
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+PTR+LA+Q + + K + +VGG S+E+ L G D+++ATPGR
Sbjct: 102 LILSPTRDLAEQTLKFTKELGKF--TDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRL 159
Query: 278 XXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPT 336
+ V +V DEAD + GF +QL IL T+ NRQT++F+AT
Sbjct: 160 MHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQIL--TQLSENRQTLLFSATLPSA 217
Query: 337 IEKVANGYLKKPSYVTVGGEES-KPKIKQIVRYVPDEEE--KLKILVKDFLPNYKAPIII 393
+ + A L++P V + E P +K V EE+ L LV++ + + + +I
Sbjct: 218 LAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLI- 276
Query: 394 FINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGID 453
F++ K +++ + + +G Q+ R+ +S R K +LI TD+A RGID
Sbjct: 277 FVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGID 336
Query: 454 IPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
IP + V+N FP FVHRV F+T E+
Sbjct: 337 IPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPED 379
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 164 bits (414), Expect = 4e-40
Identities = 116/370 (31%), Positives = 179/370 (48%), Gaps = 24/370 (6%)
Query: 161 PTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVL 220
PT +QR IP V+ D I V+ TGSGKTLAF+LPI+ L + K+ LV+
Sbjct: 24 PTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHL--------LQKNRSFYCLVV 75
Query: 221 APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXX 280
APTREL+ QI R C +VGG + + L ++V TPGR
Sbjct: 76 APTRELSSQIAECFNMFQATGLRVC---LLVGGANFNVQANQLSKRPHVVVGTPGRIAEH 132
Query: 281 XXXXXXX-XKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEK 339
++V VLDEAD+ + F + L TI+ RQT++FTAT S I K
Sbjct: 133 VLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLR--EKRQTLLFTATMSDEISK 190
Query: 340 VANGYLKKPSYV-TVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYK 398
+++ LK+P + T E+ P +K+ +V + K LV+ + +I+F++
Sbjct: 191 LSSSILKRPKTIRTAEKYETVPALKEYYLFVA-MKWKNSALVELLEMSQGMSVIVFVSMC 249
Query: 399 RTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVS 458
TA + L F + LHG SQE+RE ++ + + ++L+ TD+ RG+DI +V
Sbjct: 250 VTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVD 309
Query: 459 LVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVKKNDFTGENY 518
LV+N PKS ++HRV +T+ + + ++K +FT E
Sbjct: 310 LVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYD--------VEQIQKIEFTLEKK 361
Query: 519 ISKEAMSKYN 528
+ + M K N
Sbjct: 362 LEEFKMMKKN 371
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 161 bits (408), Expect = 2e-39
Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 15/320 (4%)
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPT 223
IQ T +V + +D I A TG+GKT +F +P++ KLHG L + P LVLAPT
Sbjct: 144 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHG--ELQDRKRGRAPQVLVLAPT 201
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXX 283
RELA Q+ + ITK C GG +R+G DILV TPGR
Sbjct: 202 RELANQVSKDFSDITKKLSVAC----FYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQN 257
Query: 284 XXXXXKQVNTLVLDEADKMIDFGFEDQLTTILA---KTETISNRQTMMFTATFSPTIEKV 340
++ +VLDE D+M+D GF DQ+ IL+ K ++ N QT++F+AT + V
Sbjct: 258 GKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNV 317
Query: 341 ANGYLKKP--SYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNY---KAPIIIFI 395
A Y+K +G + K I + + ++ D + Y + IIF
Sbjct: 318 AKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFC 377
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
K+ A L + A +LHG Q+QRE +L RNG +L+AT+VA RG+DIP
Sbjct: 378 ETKKEAQELSQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIP 436
Query: 456 NVSLVVNLQFPKSFDSFVHR 475
V LV+ PK +S++HR
Sbjct: 437 EVDLVIQSSPPKDVESYIHR 456
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 161 bits (408), Expect = 2e-39
Identities = 138/469 (29%), Positives = 216/469 (45%), Gaps = 34/469 (7%)
Query: 32 PEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDE 91
P EE S+ R+ + + D DE E + + DDL K + + +K + E
Sbjct: 16 PLEESESQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPKAKKSKMKEKLNGDTE 75
Query: 92 S----IVDNYLGKHWSEKK------YEEMSTRDWRILSEDFNI--SSKGGTVEKPLRNWH 139
+ D + H S +K +E + R+ S D + SS E R
Sbjct: 76 EGFNRLSDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHKSSDNKLEETLTREQK 135
Query: 140 ELKL----IPEDLLNIITN-DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL 194
E I E+ + ++ + Y P IQ T V +D I A TG+GKT +F +
Sbjct: 136 EGAFSNFPISEETIKLLKGRGVTYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSFAI 193
Query: 195 PILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGH 254
P++ +L +I K P LVLAPTRELA Q+ + + IT R ++ GG
Sbjct: 194 PLIERLQRNQ--ETIKKSRSPKVLVLAPTRELANQVAKDFKDIT----RKLSVACFYGGT 247
Query: 255 SLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
S + ++R+G DILV TPGR ++ +VLDE D+M+D GF +Q+ I
Sbjct: 248 SYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDI 307
Query: 315 LA---KTETISNRQTMMFTATFSPTIEKVANGYLK-KPSYVTVGGEESKPKIKQIVRY-V 369
+ KT++ N QT++F+AT + KVA Y+K + V + G+ ++ + +
Sbjct: 308 IHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
Query: 370 PDEEEKLKILVKDFLPNYKAP---IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQ 426
+ ++ D L Y IIF K+ + + A LHG +Q Q
Sbjct: 368 QCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN-PHIKQNAQCLHGDIAQSQ 426
Query: 427 REHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
RE +L R G +L+AT+VA RG+DIP V LV+ P+ +S++HR
Sbjct: 427 REITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHR 475
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 161 bits (408), Expect = 2e-39
Identities = 114/364 (31%), Positives = 183/364 (49%), Gaps = 19/364 (5%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG-PL 216
Y T IQ+ T+P V + +D + A TGSGKT AFLLPI+ +L LN + P
Sbjct: 318 YTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPR 377
Query: 217 ALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGR 276
++L PTRELA QI +EG+ + ++ I + GG ++ + + GC I+V T GR
Sbjct: 378 CIILTPTRELADQIYNEGRKFS--YQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGR 435
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTILAKTETISN--RQTMMFTATF 333
+ LVLDEAD+MID GF ++ I+ N RQTMMF+ATF
Sbjct: 436 VKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATF 495
Query: 334 SPTIEKVANGYLKKP-SYVTVG--GEESKPKIKQ--IVRYVPDEEEKLKILVKDF----- 383
++++ A L++ + +T+ G +K I++ + ++ LK+L D
Sbjct: 496 PSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTT 555
Query: 384 ---LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVD 440
+ I+F+ ++ AD L + A+ A T+HG++ Q++R +L L R+G
Sbjct: 556 EKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKP 615
Query: 441 ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSA 500
+LIAT V RG+DI V V+N P + D ++HR+ F++ +D
Sbjct: 616 VLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQI 675
Query: 501 MAKL 504
+ +L
Sbjct: 676 LPQL 679
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 161 bits (407), Expect = 3e-39
Identities = 118/371 (31%), Positives = 184/371 (48%), Gaps = 23/371 (6%)
Query: 144 IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGI 203
+ +DLL I + + P+SIQ I +I+ +D I A +G+GKT F + +L +
Sbjct: 30 LKDDLLRGIYS-YGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI--- 85
Query: 204 PPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK-RPCNIVSIVGGHSL-EEISA 261
+ K D AL+L+PTRELA QI GQ + L N +I GG +L +++
Sbjct: 86 ----DLRKKDLQ-ALILSPTRELASQI---GQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137
Query: 262 NLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID--FGFEDQLTTILAKTE 319
+ GC + TPGR + V LVLDEAD+++ GF+ Q+ I AK
Sbjct: 138 MQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197
Query: 320 TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKI 378
N Q ++ +AT + I +V ++ P + V +E S IKQ V V EE K
Sbjct: 198 --KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDT 255
Query: 379 LVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGK 438
L + +IF N K+ DWL +L ++ F ++HG QE+R+ ++ R G
Sbjct: 256 LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGH 315
Query: 439 VDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDH 498
+LI+TDV RGID+ VSLV+N P+ ++++HR+ F+T+ +
Sbjct: 316 SRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKAD-- 373
Query: 499 SAMAKLFDYVK 509
+AKL + K
Sbjct: 374 --LAKLREIEK 382
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 161 bits (407), Expect = 3e-39
Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 13/320 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ +P ++ RD I A +G+GKT F + +L L T+ A
Sbjct: 46 FEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLD--------TQVRETQA 97
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+PTRELA QIQ ++ C+ + +GG +L E L G ++ TPGR
Sbjct: 98 LILSPTRELAVQIQKVVLALGDYMNVQCH--ACIGGTNLGEDIRKLDYGQHVVSGTPGRV 155
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ + LVLDEAD+M++ GF++QL I Q ++ +AT I
Sbjct: 156 FDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP--GAQVVLLSATLPHEI 213
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ + ++ P + V +E + IKQ V EE K L+ + ++F N
Sbjct: 214 LEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCN 273
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R DWL DK++EA F +++HG Q+ R+ + R G +LI+TDV RG+D+P
Sbjct: 274 TRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQ 333
Query: 457 VSLVVNLQFPKSFDSFVHRV 476
VSLV+N P + + ++HR+
Sbjct: 334 VSLVINYDLPNNRELYIHRI 353
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 161 bits (407), Expect = 3e-39
Identities = 111/389 (28%), Positives = 186/389 (47%), Gaps = 26/389 (6%)
Query: 118 LSEDFNISSK-------GGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIP 170
+ D N+SS G ++ + ++ +++L E L I + +P++IQ+ I
Sbjct: 4 VKNDVNVSSVVDADGLIEGNYDQVVESFDDMELKEELLRGIY--GFGFEKPSAIQKRAIV 61
Query: 171 NVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP--LALVLAPTRELAQ 228
+D I A +G+GKT F + IL ++ H+ P ALV+APTRELAQ
Sbjct: 62 PCTTGKDVIAQAQSGTGKTATFSVSILQRID----------HEDPHVQALVMAPTRELAQ 111
Query: 229 QIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX 288
QIQ ++ + NI+ +GG S+ + L G ++V TPGR
Sbjct: 112 QIQKVMSALGEYLN--VNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDT 169
Query: 289 KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKP 348
++ VLDEAD+M+ GF+DQ+ + + Q ++ +AT + V N +++ P
Sbjct: 170 SRIKMFVLDEADEMLSRGFKDQIYEVFRSMP--QDVQVVLLSATMPSEVLDVTNRFMRNP 227
Query: 349 SYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDK 407
+ V +E + I+Q V +E K L + +IF N +R D L +K
Sbjct: 228 IRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEK 287
Query: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
+ E +F + LHG Q +R+ + R+G +LI TD+ RGID+ VSLV+N P
Sbjct: 288 MTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPS 347
Query: 468 SFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+ ++++HR+ F+TE +
Sbjct: 348 NRENYIHRIGRSGRFGRKGVAINFVTEND 376
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 160 bits (406), Expect = 3e-39
Identities = 121/367 (32%), Positives = 178/367 (47%), Gaps = 31/367 (8%)
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALV 219
+PT+IQ++ IP ++ RD IG A TGSGKT+AF P+L K P G +V
Sbjct: 24 QPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDP--------SGMFGVV 75
Query: 220 LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXX 279
L PTRELA QI + ++ ++ IVGG S+ + + +L+ ++ATPGR
Sbjct: 76 LTPTRELAMQIAEQFTALGSSMNIRVSV--IVGGESIVQQALDLQRKPHFIIATPGRLAH 133
Query: 280 XXXXXXXXX----KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSP 335
+ LVLDEAD ++ F D L T ++ RQT++FTAT +
Sbjct: 134 HIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITD 193
Query: 336 TIEKVANGYLKK--PSYVTVGGEE-------SKPKIKQIVRYVPDEEEKL---KILVKDF 383
++ + N ++K P E S KI+ I+ VP+ ++ ++L +
Sbjct: 194 QVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYIL--VPEHVKEAYLYQLLTCEE 251
Query: 384 LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
N A IIF+N TA+ L L++ R +LH Q++R +SL R ILI
Sbjct: 252 YENKTA--IIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILI 309
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAK 503
ATDVA RG+DIP V LVVN P D F+HR F+T + D S +
Sbjct: 310 ATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT-QRDVSRIQA 368
Query: 504 LFDYVKK 510
+ D + K
Sbjct: 369 IEDRINK 375
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 160 bits (406), Expect = 3e-39
Identities = 107/341 (31%), Positives = 167/341 (48%), Gaps = 14/341 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ I I D I A +G+GKT F + IL ++ A
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE--------LDLKATQA 103
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLE-EISANLRDGCDILVATPGR 276
LVLAPTRELAQQIQ ++ C+ + +GG ++ E+ + I+V TPGR
Sbjct: 104 LVLAPTRELAQQIQKVVMALGDYMGASCH--ACIGGTNVRAEVQKLQMEAPHIIVGTPGR 161
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPT 336
K + VLDEAD+M+ GF+DQ+ I K SN Q ++ +AT
Sbjct: 162 VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--SNTQVVLLSATMPSD 219
Query: 337 IEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFI 395
+ +V +++ P + V EE + I+Q V EE KL L + +IFI
Sbjct: 220 VLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFI 279
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
N +R DWL +K+ F + +HG Q++R+ + R+G +LI TD+ RGID+
Sbjct: 280 NTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 339
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
VSLV+N P + ++++HR+ +TEE+
Sbjct: 340 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 160 bits (404), Expect = 6e-39
Identities = 121/380 (31%), Positives = 175/380 (45%), Gaps = 39/380 (10%)
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALV 219
EPT IQ I ++ R+ IG A TGSGKT AF LPI+ K P G AL+
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP--------SGIFALI 80
Query: 220 LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXX 279
L PTRELA QI + ++ IVGG + S +L ++VATPGR
Sbjct: 81 LTPTRELAIQIDEQFAALGA--NLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 280 XXXX----XXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSP 335
+++ LV+DEAD+++ F D L + +RQT++FTAT +
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTD 198
Query: 336 TIEKVANGYLK--KPS---YVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLP-NYK 388
I ++ K KP Y S P ++Q +V + + ++ +P N K
Sbjct: 199 AIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAK 258
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
IIF+N RTA+ ++ LR R T LH Q +R +SL R IL+ATDVA
Sbjct: 259 KSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVA 318
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE-------------- 494
RG+DIP+V LV+N P+ D ++HRV +TE
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVG 378
Query: 495 ----EEDHSAMAKLFDYVKK 510
E +H + K+ +Y+K+
Sbjct: 379 TKLSEYEHVSENKMLEYIKE 398
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 159 bits (403), Expect = 8e-39
Identities = 109/341 (31%), Positives = 168/341 (48%), Gaps = 14/341 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ I I D I A +G+GKT F + IL +L + A
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLE--------IEFKETQA 104
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR-DGCDILVATPGR 276
LVLAPTRELAQQIQ ++ C+ + +GG ++ L+ + I+V TPGR
Sbjct: 105 LVLAPTRELAQQIQKVILALGDYMGATCH--ACIGGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPT 336
K + VLDEAD+M+ GF+DQ+ I K T + Q + +AT
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT--SIQVVFASATMPTD 220
Query: 337 IEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFI 395
+ +V +++ P + V EE + IKQ V EE KL L + +IF+
Sbjct: 221 VLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFL 280
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
N +R DWL +K+ F + LHG Q++R+ + R+G +LI TD+ RGID+
Sbjct: 281 NTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 340
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
VSLV+N P + ++++HR+ F+TEE+
Sbjct: 341 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 159 bits (402), Expect = 1e-38
Identities = 121/425 (28%), Positives = 209/425 (48%), Gaps = 43/425 (10%)
Query: 56 DEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDW 115
DED+ +E+ + + D + +S +L +NEDE + + S E+ S
Sbjct: 39 DEDDYEQEEENEDADQNTSVESESEEL--DNENEDERVQKSVNLNASSTSDIEKFS---- 92
Query: 116 RILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN 175
D +S ++K ++ ++ + T IQ+ +IP ++
Sbjct: 93 -----DLQLSEN---IQKAIK------------------EMGFETMTEIQKRSIPPLLAG 126
Query: 176 RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQ 235
RD +G A TGSGKTLAFL+P + L+ + +G ++++PTRELA QI +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYAL----KFKPRNGTGVIIISPTRELALQIFGVAK 182
Query: 236 SITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTL 294
+ K + IV +GG + + L G ++LVATPGR + + +L
Sbjct: 183 ELLKYHHQTFGIV--IGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSL 240
Query: 295 VLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKK-PSYVTV 353
V+DEAD++++ GFED++ I+ K NRQT++F+AT + +E +A LK P YV V
Sbjct: 241 VIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNV 299
Query: 354 GGEESKPKIKQIVR-YVPDEEEKLKILVKDFLP-NYKAPIIIFINYKRTADWLFDKLREA 411
+ ++ + + YV + +K +L+ FL N K +I+F++ + ++ + L
Sbjct: 300 DSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYI 359
Query: 412 RFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDS 471
LHG + Q++R ++ N + IL+ T+VA RG+DIP V +V P
Sbjct: 360 DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRD 419
Query: 472 FVHRV 476
++HRV
Sbjct: 420 YIHRV 424
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 159 bits (402), Expect = 1e-38
Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 13/320 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ I +I RD I + +G+GKT F + +L L + A
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD--------IQVRETQA 109
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+LAPTRELA QIQ ++ C+ + +GG ++ E L G ++ TPGR
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCH--ACIGGTNVGEDIRKLDYGQHVVAGTPGRV 167
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ + LVLDEAD+M++ GF++Q+ + + Q ++ +AT I
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--QVVLISATLPHEI 225
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ N ++ P + V +E + IKQ V EE K L + +IF N
Sbjct: 226 LEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 285
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
KR DWL +K+REA F +++HG Q++RE + R+G +LI+TDV RG+D+P
Sbjct: 286 TKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQ 345
Query: 457 VSLVVNLQFPKSFDSFVHRV 476
VSL++N P + + ++HR+
Sbjct: 346 VSLIINYDLPNNRELYIHRI 365
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 159 bits (402), Expect = 1e-38
Identities = 102/328 (31%), Positives = 167/328 (50%), Gaps = 26/328 (7%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y+ PT IQ+ IP++++ R+ I A TG GKT+ FL+PI+ + + P A
Sbjct: 117 YSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIERHRQMKK---------PQA 167
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
+++PTREL +QI+ E + + +VSI G ++ G DI+VATPGR
Sbjct: 168 CIISPTRELCEQIRVEASKLVAGSR--IRVVSIYG----KKQDLPSYSGVDIVVATPGRL 221
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++ VLDEADK++D GFE + I N QT +F+AT+SP +
Sbjct: 222 IDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVP--KNTQTCLFSATYSPKL 279
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAP------- 390
++ N +L + E+ I+Q + V ++++ L ++K N K
Sbjct: 280 TRMINYFLPEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQP 339
Query: 391 --IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
+++F+ K + L+++ +LHG K Q R+ +L RNG+ +++AT VA
Sbjct: 340 DKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVA 399
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
RGIDI +V LV+N PK ++HR+
Sbjct: 400 ARGIDIKDVKLVINYDIPKDIKEYIHRI 427
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 159 bits (402), Expect = 1e-38
Identities = 106/322 (32%), Positives = 162/322 (49%), Gaps = 14/322 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y PT IQR TIP ++ RD + +A TGSGKT FL+P+ KL P G A
Sbjct: 115 YKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTK------GARA 168
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+PTRELA Q + + + + + ++GG S++ + + D++VATPGR
Sbjct: 169 LILSPTRELAVQTYKFIKELGRFME--LKSILVLGGDSMDSQFSAIHTCPDVIVATPGRF 226
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ +V DEAD++ + GF +QL L + S+RQT+MF+AT +
Sbjct: 227 LHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLP--SSRQTVMFSATLPKLL 284
Query: 338 EKVANGYLKKPSYVTVGGEESKPK---IKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIF 394
+ A L P + + E P +K + D L +L+K +P ++ ++F
Sbjct: 285 VEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP-VQSQTVVF 343
Query: 395 INYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDI 454
+ + + L EA +++ S R+ + + N KV +LI TDVA RGIDI
Sbjct: 344 AGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDI 403
Query: 455 PNVSLVVNLQFPKSFDSFVHRV 476
P++ VVNL FP FVHRV
Sbjct: 404 PSLDFVVNLHFPGKPKLFVHRV 425
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 158 bits (400), Expect = 2e-38
Identities = 110/346 (31%), Positives = 178/346 (50%), Gaps = 13/346 (3%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL 194
+ + ELKL L I + + TS+Q TIP ++ RD +G A TGSGKTLAFL+
Sbjct: 41 VEKFEELKLSQPTLKAI--EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLI 98
Query: 195 PILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGH 254
P + LH + +G +V+ PTRELA QI + + + + IV +GG
Sbjct: 99 PAIELLHSL----KFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIV--IGGA 152
Query: 255 SLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTT 313
+ + + L G ++L+ATPGR K + L++DEAD++++ GFED++
Sbjct: 153 NRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQ 212
Query: 314 ILAKTETISNRQTMMFTATFSPTIEKVANGYLKK-PSYVTVGGEESKPKIKQIVR-YVPD 371
I+ K +RQ+M+F+AT + +E +A L+ P ++ V E + + YV
Sbjct: 213 II-KILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVC 271
Query: 372 EEEKLKILVKDFLP-NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHS 430
+ +K +L+ FL N K II+F++ + + + L LHG + Q++R ++
Sbjct: 272 DSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNT 331
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
N + ILI TDVA RG+DIP V ++ P ++HRV
Sbjct: 332 FFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 377
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 157 bits (396), Expect = 5e-38
Identities = 115/356 (32%), Positives = 170/356 (47%), Gaps = 47/356 (13%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ PT IQR TIP ++ RD +G+A TGSGKT AF++P+ I L S + A
Sbjct: 89 FKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPM------IEHLKSTLANSNTRA 142
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+P RELA Q + +K V+IVGG SLEE + L DI+VATPGR
Sbjct: 143 LILSPNRELALQTVKVVKDFSK--GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRF 200
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ +V DEAD++ + GF QLT IL T +RQT++F+AT T+
Sbjct: 201 LHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPT--SRQTLLFSATLPRTL 258
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRY---VPDEEEKLKILVKDFLP--------- 385
A L+ P V + E Q + + E L +++D +
Sbjct: 259 VDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRP 318
Query: 386 ----NYKAP---------------------IIIFINYKRTADWLFDKLREARFRATTLHG 420
N P ++F+ K +++ + L +A + + ++G
Sbjct: 319 REIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYG 378
Query: 421 SKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
S QE R + ++ R GK ++L+ TDVA RGIDIP ++ V+N FP FVHRV
Sbjct: 379 SLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRV 434
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 157 bits (396), Expect = 5e-38
Identities = 110/356 (30%), Positives = 177/356 (48%), Gaps = 16/356 (4%)
Query: 145 PEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIP 204
PE +L + E T+IQR IP + + RD + A TGSGKT+A+L PIL KL
Sbjct: 53 PEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV 112
Query: 205 PLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV-GGHSLEEISANL 263
P G A+++APTREL +QI + + ++ + I+ + ++E + L
Sbjct: 113 P-------GGYRAIIVAPTRELCEQIYRQAEKLS--FGTSLKIIELSKSNEKIQEKAPKL 163
Query: 264 RDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN 323
R+ D+ + TP R K V V+DEAD++ + GF +Q IL+ T SN
Sbjct: 164 REKYDMCIGTPMRLVQAIQTGLSFEK-VEFFVMDEADRLFEPGFIEQTDHILSAC-TSSN 221
Query: 324 RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKP-KIKQIVRYVPDEEEKLKILVKD 382
+F+AT +E++A P + VG +++ I Q + +V + K+ IL +
Sbjct: 222 ICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVIL-RQ 280
Query: 383 FLPN--YKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVD 440
+ N K ++IF+ A L+ +L +HG Q +RE +L+ R G++
Sbjct: 281 MISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIW 340
Query: 441 ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+LIATD+ RGID V +V+N FP+S S++HR+ F T+E+
Sbjct: 341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 156 bits (394), Expect = 9e-38
Identities = 143/526 (27%), Positives = 242/526 (45%), Gaps = 58/526 (11%)
Query: 24 IKKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLL 83
+KK + P+ +KA ++VI D D +E Q+ E D F K ++
Sbjct: 13 VKKESGPK------AKAADYSVINGNDENHKEDNNE---SQIVKELD---FFRNKR--II 58
Query: 84 KKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRI------------LSEDFNISSKGGTV 131
K +++ E +N S K E+ D I L + + + G +
Sbjct: 59 SKVEDDREKTTEND-----SPNKEEKSGNDDGLIKPVITNTVEASALRKSYKGNVSGIDI 113
Query: 132 EKPLRNWHEL----KLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSG 187
P+ ++ +L L N+I N + EPT IQ IP +NNRD + TGSG
Sbjct: 114 PLPIGSFEDLISRFSFDKRLLNNLIENG--FTEPTPIQCECIPVALNNRDVLACGPTGSG 171
Query: 188 KTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSIT-KLW---KR 243
KTLAFL+P+ + + + G L+++PT+ELA QI E ++ K++ KR
Sbjct: 172 KTLAFLIPL------VQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKR 225
Query: 244 PCNIVSI---VGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEAD 300
P + + +G ++ ++ + DI+++TP R +V L+ DEAD
Sbjct: 226 PLQVALLSKSLGAKLKNKVVSDKK--YDIIISTPLRLIDVVKNEALDLSKVKHLIFDEAD 283
Query: 301 KMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEES-K 359
K+ D F +Q IL+ S R+ M F+AT +E++A + P V +G +E+
Sbjct: 284 KLFDKTFVEQSDDILSACREPSLRKAM-FSATIPSNVEEIAQSIMMDPVRVIIGHKEAAN 342
Query: 360 PKIKQIVRYVPDEEEKLKILVKDFLPN--YKAPIIIFINYKRTADWLFDKLREARFRATT 417
I+Q + + +EE KL I ++ + +K PIIIF+ A L+ +L R
Sbjct: 343 TNIEQKLIFCGNEEGKL-IAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDV 401
Query: 418 LHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
+H ++ QR+ + + G++ LI TDV RGID V+LV+N P S ++VHR+
Sbjct: 402 IHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIG 461
Query: 478 XXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEA 523
F T ++D A+ + + +K++ ++ K A
Sbjct: 462 RTGRGGRSGKAITFYT-KQDSVAIKPIINVMKQSGCEVSEWMDKMA 506
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 156 bits (394), Expect = 9e-38
Identities = 109/366 (29%), Positives = 178/366 (47%), Gaps = 20/366 (5%)
Query: 138 WHEL------KLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLA 191
WHE+ + E+LL I + +P++IQ+ I + RD I A +G+GKT
Sbjct: 11 WHEVYDNFDDMNLREELLRGIYG-YGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTAT 69
Query: 192 FLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV 251
F + IL ++ SI + AL+LAPTRELA QIQ ++ + K + + +
Sbjct: 70 FSIAILQQID-----TSIRECQ---ALILAPTRELATQIQRVVMALGEYMKVHSH--ACI 119
Query: 252 GGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQL 311
GG ++ E + L GC ++V TPGR + + VLDEAD+M+ GF+DQ+
Sbjct: 120 GGTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQI 179
Query: 312 TTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVP 370
+ + Q ++ +AT P + +V+ +++ P + V EE + IKQ V
Sbjct: 180 QDVFKMLPP--DVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVK 237
Query: 371 DEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHS 430
E KL L + +IF N +R D L ++ F + +HG Q RE
Sbjct: 238 QENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVI 297
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXX 490
+ R+G +LI TD+ RGID+ VSLV+N P + ++++HR+
Sbjct: 298 MKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAIN 357
Query: 491 FLTEEE 496
F+T+++
Sbjct: 358 FITDDD 363
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 155 bits (393), Expect = 1e-37
Identities = 109/349 (31%), Positives = 171/349 (48%), Gaps = 20/349 (5%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
+L +PT +Q +P ++ RD +G+A TGSGKT AF LPIL +L P G
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPY--------G 126
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
ALV+ PTRELA Q+ + +++ C++ IVGG + + +L I++ TP
Sbjct: 127 VFALVVTPTRELAFQLAEQFKALGSCLNLRCSV--IVGGMDMLTQTMSLVSRPHIVITTP 184
Query: 275 GRXXXXXXXXXXX---XKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTA 331
GR + LVLDEAD+++D GF+D+L TI +RQT++F+A
Sbjct: 185 GRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP--KSRQTLLFSA 242
Query: 332 TFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYK--- 388
T + ++ + K +Y E K +++ ++++ ++ + L +
Sbjct: 243 TMTSNLQALLEHSSNK-AYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKG 301
Query: 389 -APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
+IF++ RT L L E +H SQ R +LS ++GKV IL+ATDV
Sbjct: 302 IRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDV 361
Query: 448 AGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
A RG+DIP V LV+N P+ +VHRV +TE +
Sbjct: 362 ASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETD 410
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 155 bits (392), Expect = 1e-37
Identities = 117/381 (30%), Positives = 187/381 (48%), Gaps = 28/381 (7%)
Query: 118 LSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRD 177
+ +D + + + L +W L P L + + YN +IQ + IP V++ D
Sbjct: 363 VGQDRAVEIRNAEKDVRLTSWTNSGLHPTILETL--KRIKYNNVRTIQGAMIPQVLDGHD 420
Query: 178 FIGVASTGSGKTLAFLLPILIKLHGIPP--LNSITKHDGPLALVLAPTRELAQQIQHEGQ 235
+G A T +GKT AF LPI+ K+ + N + DGPLAL+LAPTRELA QI +
Sbjct: 421 VLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIH---E 477
Query: 236 SITKLWKRPCNIVSIVGGHSLEEISAN-LRDGCDILVATPGRXXXXXXXXXXXXKQVNTL 294
++ + IV + G S S N +R+GCDIL+ T GR + L
Sbjct: 478 ALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFL 537
Query: 295 VLDEADKMIDFGFEDQLTTILAKT------ETISNRQTMMFTATFSPTIEKVANGYLKKP 348
V DEAD+++ +D L + A E+ + RQT+M +ATF+ ++ VAN +K+
Sbjct: 538 VFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRL 597
Query: 349 -------SYVTVGGEESKPKIKQIV--RYVPDEEEKLKILVKDFLPNYKAPIIIFINYKR 399
V G SK + + + ++ KL+ ++K + IIF+ K
Sbjct: 598 PGQDEMIKIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKD 657
Query: 400 TADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSL 459
D KL A TLHG +SQ+ RE ++ ++ +V++L+ TD+ RGID+ ++
Sbjct: 658 QCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDR 717
Query: 460 VVNLQFP-----KSFDSFVHR 475
V+N P + D+F+HR
Sbjct: 718 VINFDLPDGDPDQGADTFIHR 738
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 155 bits (392), Expect = 1e-37
Identities = 140/465 (30%), Positives = 211/465 (45%), Gaps = 47/465 (10%)
Query: 18 KKPRFLIKKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLAR 77
KK +KK+ E ++ K +K D+ DE+E +++ ++
Sbjct: 9 KKEEKKMKKKMALDTPELDSKKGKKEQKLKLSDS----DEEESEKKK-----------SK 53
Query: 78 KSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRN 137
K K + EDE D+ K S KK + + D + ++ N SK + PLR
Sbjct: 54 KKDKKRKASEEEDEVKSDSSSEKKKSSKKVK-LGVEDVEV--DNPNAVSKF-RISAPLRE 109
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+ N + P IQ ST V++ D +G A TG GKTLAF+LPIL
Sbjct: 110 ------------KLKANGIEALFP--IQASTFDMVLDGADLVGRARTGQGKTLAFVLPIL 155
Query: 198 IKLHGIPPLNSITKHDG--PLALVLAPTRELAQQIQHEGQSIT-KLWKRPCNIVSIVGGH 254
L P + G P LVL PTRELA+Q+ + + L C + GG
Sbjct: 156 ESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSC---CLYGGD 212
Query: 255 SLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
S L+ G DI+V TPGR + VLDEAD+M+ GF + + I
Sbjct: 213 SYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELI 272
Query: 315 LAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYV--PDE 372
L K E + QT++F+AT ++ ++N +LK+ K K VR++ P
Sbjct: 273 LGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCN 332
Query: 373 EEKLKILVKDFLPNYKA--PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHS 430
+ + L+ D + Y + IIF K L L +R LHG Q QRE +
Sbjct: 333 KAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVT 388
Query: 431 LSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
L+ RNGK L+AT+VA RG+DI +V L++ + P+ ++++HR
Sbjct: 389 LAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHR 433
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 155 bits (392), Expect = 1e-37
Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 13/320 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ +I ++ RD I A +G+GKT F + IL L T
Sbjct: 46 FEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLD--------TTLRETQV 97
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L L+PTRELA QIQ ++ + C++ +GG +L E L G I+ TPGR
Sbjct: 98 LCLSPTRELAVQIQKVILALGDMMNVQCHVC--IGGTNLGEDIRKLDYGQHIVSGTPGRV 155
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ + LVLDEAD+M++ GF++Q+ + + Q ++ +AT I
Sbjct: 156 FDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--QVVLISATLPHEI 213
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ + ++ P + V +E + IKQ V EE K L + +IF N
Sbjct: 214 LEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 273
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
KR DWL +K+REA F +++HG Q++R+ + R G+ +LI TDV RGID+
Sbjct: 274 TKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQ 333
Query: 457 VSLVVNLQFPKSFDSFVHRV 476
VSLV+N P + + ++HR+
Sbjct: 334 VSLVINYDLPNNRELYIHRI 353
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 154 bits (389), Expect = 3e-37
Identities = 131/383 (34%), Positives = 181/383 (47%), Gaps = 28/383 (7%)
Query: 100 KHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYN 159
K+ S K E S SE+ N S+ K + EL +I E L L +
Sbjct: 13 KNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFK---ELGVIDE--LCEACEKLGFK 67
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPL-AL 218
PT IQ+ IP V+N RD IG+A TGSGKT AF LP++ +L P P A+
Sbjct: 68 TPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP---------SPFFAV 118
Query: 219 VLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXX 278
VLAPTRELA QI + ++I V IVGG + + L +LV TPGR
Sbjct: 119 VLAPTRELAYQISEQFEAIGG--SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 279 XXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
K + L++DEAD+++D F + IL R+T++F+AT + +
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIP--HERRTLLFSATMTSKV 234
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYV----PDEEEKLKILVKDFLPNYKAPIII 393
EK+ L +P V V + S I RY+ ++ L LV + N III
Sbjct: 235 EKLQRASLHQPVRVAVSSKFSTVDTL-IQRYLFFPFKHKDTYLVYLVNELAGN---SIII 290
Query: 394 FINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGID 453
F L LR F A LHG SQ R +L+ ++G L+ATDVA RG+D
Sbjct: 291 FARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLD 350
Query: 454 IPNVSLVVNLQFPKSFDSFVHRV 476
IP V +V+N P +++HRV
Sbjct: 351 IPLVDVVINYDIPTDSKAYIHRV 373
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 153 bits (387), Expect = 6e-37
Identities = 106/354 (29%), Positives = 171/354 (47%), Gaps = 14/354 (3%)
Query: 144 IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGI 203
+ EDLL I Y P+++Q I + RD I A +G+GKT F + IL +
Sbjct: 28 LKEDLLRGIYA-YGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSI--- 83
Query: 204 PPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL 263
++ D AL+L+PTRELA QIQ+ ++ C+ + +GG S+ L
Sbjct: 84 ----DLSVRDTQ-ALILSPTRELAVQIQNVVLALGDHMNVQCH--ACIGGTSVGNDIKKL 136
Query: 264 RDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN 323
G ++ TPGR + V L+LDEAD++++ GF++Q+ I
Sbjct: 137 DYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPP--G 194
Query: 324 RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKD 382
Q ++ +AT + ++ N + P + V +E + +KQ V EE K L
Sbjct: 195 TQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL 254
Query: 383 FLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDIL 442
+ +IF N +R DWL +K+REA F T++HG Q++R+ + R G +L
Sbjct: 255 YDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVL 314
Query: 443 IATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
I TD+ RGID+ VSLV+N P + ++++HR+ F+T E+
Sbjct: 315 ICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNED 368
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 153 bits (386), Expect = 7e-37
Identities = 101/322 (31%), Positives = 162/322 (49%), Gaps = 14/322 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y PT IQR TIP +++ +D + +A TGSGKT FLLP+ +L + + G A
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERL------KTHSAQTGARA 169
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+PTRELA Q + + K I+GG +E+ A L + DI++ATPGR
Sbjct: 170 LILSPTRELALQTLKFTKELGKF--TGLKTALILGGDRMEDQFAALHENPDIIIATPGRL 227
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ V +V DEAD++ + GF +QL I+A+ QT++F+AT +
Sbjct: 228 VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP--GGHQTVLFSATLPKLL 285
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAP---IIIF 394
+ A L +P + + + + + ++ E+ K +L+ L N P ++F
Sbjct: 286 VEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLH-LLHNVVRPQDQTVVF 344
Query: 395 INYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDI 454
+ K A++L + L R ++ + R+ +L+ GK LI TD+A RG+DI
Sbjct: 345 VATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDI 404
Query: 455 PNVSLVVNLQFPKSFDSFVHRV 476
P + V+N FP F+HRV
Sbjct: 405 PLLDNVINYSFPAKGKLFLHRV 426
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 152 bits (385), Expect = 9e-37
Identities = 107/341 (31%), Positives = 163/341 (47%), Gaps = 13/341 (3%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ I D I A +G+GKT F +L +L S+ + A
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLD-----ISLVQCQ---A 112
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LVLAPTRELAQQI+ +++ + VGG S+ E L+ G ++V TPGR
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQ--ACVGGTSVREDQRVLQSGVHVVVGTPGRV 170
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ VLDEAD+M+ GF+DQ+ I S Q +F+AT P
Sbjct: 171 FDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLP--SKVQVGVFSATMPPEA 228
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ ++ KP + V +E + IKQ V EE KL+ L + +IF+N
Sbjct: 229 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVN 288
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R DWL DK+R + HG Q R+ + R+G +LI TD+ RGID+
Sbjct: 289 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 348
Query: 457 VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
VSLV+N P ++++HR+ F+T E++
Sbjct: 349 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDE 389
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 152 bits (384), Expect = 1e-36
Identities = 112/378 (29%), Positives = 183/378 (47%), Gaps = 24/378 (6%)
Query: 99 GKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHY 158
G W KK ++ +D RI + D S+KG E + L E L+ I ++ +
Sbjct: 58 GDDW--KKTLKLPPKDLRIKTSDVT-STKGNEFE-------DYCLKRELLMGIF--EMGW 105
Query: 159 NEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLAL 218
+P+ IQ +IP ++ RD + A G+GK+ A+L+P+L +L K D A+
Sbjct: 106 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD--------LKKDNIQAM 157
Query: 219 VLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXX 278
V+ PTRELA Q+ ++K +++ GG +L + L D +++ATPGR
Sbjct: 158 VIVPTRELALQVSQICIQVSK-HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRIL 216
Query: 279 XXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIE 338
V +VLDEADK++ F + I+ NRQ ++++ATF +++
Sbjct: 217 DLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP--KNRQILLYSATFPLSVQ 274
Query: 339 KVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYK 398
K N +L+KP + + E + + Q YV E +K+ L F IIF N
Sbjct: 275 KFMNSHLQKPYEINLMEELTLKGVTQYYAYVT-ERQKVHCLNTLFSRLQINQSIIFCNSS 333
Query: 399 RTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVS 458
+ + L K+ + + +H QE R RNG L+ TD+ RGIDI V+
Sbjct: 334 QRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVN 393
Query: 459 LVVNLQFPKSFDSFVHRV 476
+V+N FPK ++++HR+
Sbjct: 394 VVINFDFPKLAETYLHRI 411
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 152 bits (383), Expect = 2e-36
Identities = 105/348 (30%), Positives = 171/348 (48%), Gaps = 15/348 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ EP++IQ+ I +I D + A +G+GKT F + L ++ T P A
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID--------TSVKAPQA 93
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+LAPTRELA QIQ ++ + + + +GG S E + LRD I+V TPGR
Sbjct: 94 LMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRV 150
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++ +LDEAD+M+ GF++Q+ I T Q ++ +AT +
Sbjct: 151 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF--TLLPPTTQVVLLSATMPNDV 208
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
+V +++ P + V +E + IKQ V +EE K + L + +IF N
Sbjct: 209 LEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCN 268
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R + L KLR +F + ++ Q++R+ + R+G ILI+TD+ RGID+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 457 VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
VSLV+N P + ++++HR+ F+T ED AM +L
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMREL 375
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 152 bits (383), Expect = 2e-36
Identities = 105/348 (30%), Positives = 171/348 (48%), Gaps = 15/348 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ EP++IQ+ I +I D + A +G+GKT F + L ++ T P A
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID--------TSVKAPQA 93
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+LAPTRELA QIQ ++ + + + +GG S E + LRD I+V TPGR
Sbjct: 94 LMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRV 150
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++ +LDEAD+M+ GF++Q+ I T Q ++ +AT +
Sbjct: 151 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF--TLLPPTTQVVLLSATMPNDV 208
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
+V +++ P + V +E + IKQ V +EE K + L + +IF N
Sbjct: 209 LEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCN 268
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R + L KLR +F + ++ Q++R+ + R+G ILI+TD+ RGID+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 457 VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
VSLV+N P + ++++HR+ F+T ED AM +L
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMREL 375
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 152 bits (383), Expect = 2e-36
Identities = 116/409 (28%), Positives = 183/409 (44%), Gaps = 72/409 (17%)
Query: 148 LLNIITNDLH---YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIP 204
L I+ N++ + +PT IQR TIP ++ +RD +G+A TGSGKT AF+LP++ K
Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK----- 198
Query: 205 PLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV--GGHSLEEISAN 262
L S + G A++L+P+RELA Q ++ K + R + S++ GG SLEE
Sbjct: 199 -LKSHSGKIGARAVILSPSRELAMQT----FNVFKDFARGTELRSVLLTGGDSLEEQFGM 253
Query: 263 LRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS 322
+ D+++ATPGR K V +V DEAD++ + GF++QL +LA T
Sbjct: 254 MMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPT-- 311
Query: 323 NRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK--------------------I 362
RQT++F+AT ++ L P V + E + I
Sbjct: 312 TRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYI 371
Query: 363 KQIVRYVP-------------------------DEEEKLKILVKDFLPNYKAP------- 390
Q + +P D ++K + K+ K P
Sbjct: 372 LQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPS 431
Query: 391 ---IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
I+F+ + +++ LR+ + + ++G+ Q R+ L R G IL+ TDV
Sbjct: 432 EKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDV 491
Query: 448 AGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
A RG+DIP ++ V+N P S FVHRV + E E
Sbjct: 492 AARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE 540
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 151 bits (382), Expect = 2e-36
Identities = 130/427 (30%), Positives = 199/427 (46%), Gaps = 29/427 (6%)
Query: 86 RQNEDESIVDNYLGKHW--SEKKYEEMSTRDWRILSEDFNISS----KGGTVEKPLRNWH 139
R NE E I L K W S+K + R L +D I K GTV
Sbjct: 15 RLNEVEEI---NLLKQWIESQKPDSGFNPLSLRPLPKDSKIGKSEDGKNGTVFSRYAGVR 71
Query: 140 ELKLIP-EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILI 198
+ +P D D Y + T +Q + IP+ + RD +G A TGSGKTLAF++PIL
Sbjct: 72 KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131
Query: 199 KLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEE 258
KLH + DG ++++PTRELA Q + K K + ++GG +
Sbjct: 132 KLH----RERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGL--LIGGREGVD 185
Query: 259 ISANLRDGCDILVATPGRXXXXXXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAK 317
+ +ILV PGR Q+ L+LDEAD+++D F+ QL I+++
Sbjct: 186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245
Query: 318 TETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGE---ESKPKIKQIVRYVPDEEE 374
+RQT++F+AT + ++ +A L+ P Y++V E + + Q V VP E+
Sbjct: 246 LP--KHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVP-VEK 302
Query: 375 KLKILVKDFLPNYKAPIIIFINYKRTADWL---FDKLREARFRATTLHGSKSQEQREHSL 431
KL +L + + I++F++ K+ ++ F+KLR +LHG SQE+R
Sbjct: 303 KLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPG-IPLKSLHGKMSQEKRMGVY 361
Query: 432 SLLRNGKVDILIATDVAGRGIDIPN-VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXX 490
S + +L TDV RG+D V VV + P+ S++HRV
Sbjct: 362 SQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLL 420
Query: 491 FLTEEED 497
FLT E+
Sbjct: 421 FLTPSEE 427
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 150 bits (380), Expect = 4e-36
Identities = 106/367 (28%), Positives = 175/367 (46%), Gaps = 37/367 (10%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
Y++PT IQ++ IP + +D A+TG+GKT AF+LPIL ++ P S T+
Sbjct: 168 YSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTR-----V 222
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LVL PTRELA Q+ + ++ + + GG L+ A LR G D++VATPGR
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQ--LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL 280
Query: 278 XXXXXXXXXXX-------------------------KQVNTLVLDEADKMIDFGFEDQLT 312
LVLDEAD+M++ F DQ+
Sbjct: 281 IDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMN 340
Query: 313 TILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVG-GEESKPKIKQ-IVRYVP 370
++ NRQT++F+AT + I+++A+ L+KP + + ++ K++Q +R
Sbjct: 341 ELIRLCA--QNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRA 398
Query: 371 DEEEKLKILVKDFLPN-YKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREH 429
E + +V + ++ I+F+ K+ + L + + S +Q QR
Sbjct: 399 GRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIE 458
Query: 430 SLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXX 489
SLS + ++D+L++TD+A RG+DI V V+N+ PKS ++HRV
Sbjct: 459 SLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSI 518
Query: 490 XFLTEEE 496
+ E+E
Sbjct: 519 SLVGEDE 525
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 150 bits (380), Expect = 4e-36
Identities = 109/353 (30%), Positives = 167/353 (46%), Gaps = 17/353 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ I D I A +G+GKT F +L +L S+ + A
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDF-----SLIQCQ---A 110
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LVLAPTRELAQQI+ +++ + + VGG S+ E L+ G ++V TPGR
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLG--VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ VLDEAD+M+ GF+DQ+ I Q +F+AT P
Sbjct: 169 FDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP--KIQVGVFSATMPPEA 226
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ ++ KP + V +E + IKQ V EE KL+ L + +IF+N
Sbjct: 227 LEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 286
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R DWL DK+R + HG Q R+ + R+G +LI TD+ RGID+
Sbjct: 287 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 346
Query: 457 VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVK 509
VSLV+N P ++++HR+ F+T +++ LFD K
Sbjct: 347 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER----MLFDIQK 395
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 150 bits (379), Expect = 5e-36
Identities = 103/333 (30%), Positives = 157/333 (46%), Gaps = 14/333 (4%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
D + T +Q +T+P ++ +D + A TG+GKT+AFLLP + + PP + +H
Sbjct: 97 DAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPP 156
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL-RDGCDILVAT 273
+ LV+ PTRELA Q E + K + + ++GG L L + C ILVAT
Sbjct: 157 IIVLVVCPTRELACQAAAEANILLK-YHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVAT 215
Query: 274 PGRXXXXXXXXXXXXKQ---VNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFT 330
PGR + V LVLDEAD ++D GF ++ I+A RQT +F+
Sbjct: 216 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVP--KQRQTFLFS 273
Query: 331 ATFSPTIEKVANGYLKKP----SYVTVGGEESKPKIKQIVRYVP-DEEEKL--KILVKDF 383
AT S + ++ + LK+ + V G E+ K+ Q+ D L +L K
Sbjct: 274 ATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHI 333
Query: 384 LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
N +IIF + D L + +H K Q R R K IL+
Sbjct: 334 TDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILV 393
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+DV+ RG+D P+VSLVV + P + ++HR+
Sbjct: 394 TSDVSARGVDYPDVSLVVQMGLPSDREQYIHRL 426
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 150 bits (378), Expect = 6e-36
Identities = 125/448 (27%), Positives = 206/448 (45%), Gaps = 47/448 (10%)
Query: 68 EPDDLLFLARKSADLLKKRQNE----DESIVDNYLGKHWSEKKYEEMSTRDWR--ILSED 121
E D + A K LLKKR+ + +E+++D E+KY+EM + R + ED
Sbjct: 27 EQDPSVRKALKEKRLLKKRKQDLKGQEETMLDEV------EQKYQEMLKKSSRTFLRFED 80
Query: 122 FNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGV 181
F +S W L+ + + ND Y +PT IQR TI + D +G
Sbjct: 81 FPLS------------WRTLEGLKD-------ND--YTKPTEIQRDTIAYSLTGSDVVGA 119
Query: 182 ASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLW 241
A TGSGKTLA ++P+L L + G AL+++PTRELA Q ++
Sbjct: 120 AKTGSGKTLALVIPVLEALWRA----KWSPDYGLGALIISPTRELALQTFSTINAVGAHH 175
Query: 242 KRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEAD 300
C +V +GG + N G +I+V TPGR + LVLDEAD
Sbjct: 176 GFSCGLV--IGGSDVA-FERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEAD 232
Query: 301 KMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTV--GGEES 358
+M+D GF QL +I+ + RQT++F+AT + ++ + P +V+V +
Sbjct: 233 RMLDMGFSKQLNSIINNLP--AERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAA 290
Query: 359 KPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREAR--FRAT 416
P + + +EE K+ L + K ++F++ + A +L + + R
Sbjct: 291 TPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVM 350
Query: 417 TLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
L G+ +Q++R + + K +LIATDVA RG+D ++ V+ + P D ++HRV
Sbjct: 351 GLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRV 410
Query: 477 XXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
++ ++ + + KL
Sbjct: 411 GRSARMDDSGNSLLMVSPSQEEAMIGKL 438
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 150 bits (378), Expect = 6e-36
Identities = 114/367 (31%), Positives = 179/367 (48%), Gaps = 34/367 (9%)
Query: 161 PTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVL 220
PT +QR +I + +D +G A TGSGKTLAFL+P+L L +N ++ DG A+++
Sbjct: 95 PTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF----MNKWSRTDGVGAIII 150
Query: 221 APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXX 280
+PTRELA QI + + K + I+GG +L + D C+IL+ TPGR
Sbjct: 151 SPTRELAYQIFETLKKVGKHHDFSAGL--IIGGKNL-KFERTRMDQCNILICTPGRLLQH 207
Query: 281 XXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEK 339
+ LVLDEAD+ +D GF+ L +I+ + RQT++F+AT + T++
Sbjct: 208 MDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPV--RQTLLFSATQTNTVQD 265
Query: 340 VANGYLKKPSYVTVGGEESK------------------PKIKQIVRYVPDEEEKLKILVK 381
+A LK P YV GG + P++ Q V + E+K+ +L
Sbjct: 266 LARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWS 325
Query: 382 DFLPNYKAPIIIFINYKRTADWLFD---KLREARFRATTLHGSKSQEQREHSL-SLLRNG 437
+ K II+F+ + A +L++ KLR L+G+ Q++R LR
Sbjct: 326 FIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGS-PLLALYGTLHQDRRIAIYEDFLRKS 384
Query: 438 KVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
V ++ +TDVA RG+D P V+ VV L P+ ++HR LT E+
Sbjct: 385 HV-VMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEE 443
Query: 498 HSAMAKL 504
++ L
Sbjct: 444 EYMISAL 450
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 149 bits (376), Expect = 1e-35
Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 16/326 (4%)
Query: 157 HYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPL 216
H+ T IQ+ IP+ + RD +G A TGSGKTLAF++P++ L+ T DG
Sbjct: 58 HFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLY----RKKWTSLDGLG 113
Query: 217 ALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGR 276
ALV++PTRELA Q I +L + I+GG++ +E L +ILV TPGR
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGL--IIGGNNYKEEKERL-SRMNILVCTPGR 170
Query: 277 -XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSP 335
+ L+LDEAD+++D GF L I++ +RQTM+F+AT +
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPV--HRQTMLFSATQTK 228
Query: 336 TIEKVANGYLKKPSYVTVGGEESK---PKIKQIVRYVPDEEEKLKILVKDFLPNYKAPII 392
+++ +A L+ P +++V ++ + Q VP EKL IL + K I
Sbjct: 229 SVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVP-LTEKLDILFGFIRTHLKFKTI 287
Query: 393 IFINYKRTADWLFDKLREAR--FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450
+F++ + ++++ R R LHG + Q R + + + +L TD+ R
Sbjct: 288 VFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVAR 347
Query: 451 GIDIPNVSLVVNLQFPKSFDSFVHRV 476
G+D P V V+ L P+ D+++HRV
Sbjct: 348 GLDFPAVDWVIQLDAPEDVDTYIHRV 373
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 149 bits (376), Expect = 1e-35
Identities = 116/401 (28%), Positives = 188/401 (45%), Gaps = 21/401 (5%)
Query: 106 KYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHEL----KLIPEDLLNIITNDLHYNEP 161
K E + L I +G + P+ + +L K+ L NI+ D + P
Sbjct: 23 KLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNIL--DAGFQMP 80
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLA 221
T IQ IP +++ R+ + A TGSGKTLAF +PIL++L P N G AL+++
Sbjct: 81 TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK--QPANK-----GFRALIIS 133
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXX 281
PTRELA QI E I++ +++ + ++ DILV TP R
Sbjct: 134 PTRELASQIHRELIKISEGTGFRIHMIH-KAAVAAKKFGPKSSKKFDILVTTPNRLIYLL 192
Query: 282 XXX--XXXXKQVNTLVLDEADKMID---FGFEDQLTTILAKTETISNRQTMMFTATFSPT 336
V LV+DE+DK+ + GF DQL +I + R+ M F+ATF+
Sbjct: 193 KQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAM-FSATFAYD 251
Query: 337 IEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFI 395
+E+ L V++G S + ++Q + +V E KL + + + P+++F+
Sbjct: 252 VEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV 311
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
A LF +L +H ++Q+QR++++ R GK+ +LI T + RGID
Sbjct: 312 QSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFK 371
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
V+LV+N FP S ++HR+ F TE++
Sbjct: 372 GVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDD 412
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 149 bits (376), Expect = 1e-35
Identities = 99/333 (29%), Positives = 161/333 (47%), Gaps = 14/333 (4%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
D + T +Q +T+P ++ +D + A TG+GKT+AFLLP + + PP + ++
Sbjct: 376 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 435
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR-DGCDILVAT 273
+ LV+ PTRELA Q E ++ K + + ++GG L ++ + C ILVAT
Sbjct: 436 IIVLVVCPTRELASQAAAEANTLLK-YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVAT 494
Query: 274 PGRXXXXXXXXXXXXKQ---VNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFT 330
PGR + V LVLDEAD ++D GF + I+A RQT +F+
Sbjct: 495 PGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVP--KQRQTFLFS 552
Query: 331 ATFSPTIEKVANGYLKKP----SYVTVGGEESKPKIKQ--IVRYVPDEEEKLKILVKDFL 384
AT + ++ + LK+ + V G E+ K+ Q ++ + L +L+K+ +
Sbjct: 553 ATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHI 612
Query: 385 -PNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
N +IIF + D L + +H K Q R R K IL+
Sbjct: 613 ADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILV 672
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+DV+ RG+D P+VSLVV + P + ++HR+
Sbjct: 673 TSDVSARGVDYPDVSLVVQMGLPSDREQYIHRL 705
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 148 bits (374), Expect = 2e-35
Identities = 113/352 (32%), Positives = 167/352 (47%), Gaps = 19/352 (5%)
Query: 147 DLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPL 206
D+L + L + +PT IQ IP + RD IG+A TGSGKT AF LPIL L P
Sbjct: 33 DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-- 90
Query: 207 NSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDG 266
ALVL PTRELA QI + +++ IVGG S L
Sbjct: 91 ------QRLFALVLTPTRELAFQISEQFEALGS--SIGVQSAVIVGGIDSMSQSLALAKK 142
Query: 267 CDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQ 325
I++ATPGR + + LV+DEAD++++ FE ++ IL +R+
Sbjct: 143 PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR--DRK 200
Query: 326 TMMFTATFSPTIEKVANGYLKKPSYVTVGGE-ESKPKIKQIVRYVPDE--EEKLKILVKD 382
T +F+AT + ++K+ LK P V + ++ K++Q ++P + + L ++ +
Sbjct: 201 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNE 260
Query: 383 FLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDIL 442
N +IF + LR F A LHG SQ +R SL+ + IL
Sbjct: 261 LAGN---SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 443 IATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE 494
+ATDVA RG+DIP+V +VVN P ++HRV F+T+
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 148 bits (374), Expect = 2e-35
Identities = 111/326 (34%), Positives = 167/326 (51%), Gaps = 21/326 (6%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
L + +P+ IQ++ +P+ + +D IG+A TGSGKT AF +P+L L P
Sbjct: 62 LGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP--------QAF 113
Query: 216 LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVS-IVGGHSLEEISANLRDGCDILVATP 274
LVL PTRELA QI GQ L I + IVGG + + L I+VATP
Sbjct: 114 FCLVLTPTRELAFQI---GQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATP 170
Query: 275 GRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATF 333
GR K + L++DEAD++++ FE +L IL R+T +F+AT
Sbjct: 171 GRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPR--ERRTYLFSATM 228
Query: 334 SPTIEKVANGYLKKPSYVTVGGE-ESKPKIKQIVRYVPDE--EEKLKILVKDFLPNYKAP 390
+ + K+ L+ P+ V+V ++ +KQ +VP++ E L L+ + N
Sbjct: 229 TKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGN---S 285
Query: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450
I+F T + LR+ +A LHG SQE+R SL+ ++ +IL+ TDVA R
Sbjct: 286 AIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAAR 345
Query: 451 GIDIPNVSLVVNLQFPKSFDSFVHRV 476
G+DIP+V +V+N P +VHRV
Sbjct: 346 GLDIPHVDMVINYDMPSQSKDYVHRV 371
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 148 bits (373), Expect = 2e-35
Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+ IP ++ RD I A +G+GKT F + +L L T+ A
Sbjct: 46 FEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLD--------TQVRETQA 97
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L+PTRELA QIQ ++ C+ + +GG +L E L G ++ TPGR
Sbjct: 98 LILSPTRELAVQIQKVVLALGDYMNVQCH--ACIGGTNLGEDIRKLDYGQHVVSGTPGRV 155
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ + LVLDEAD+M++ GF++QL I Q ++ +AT I
Sbjct: 156 FDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP--GAQVVLLSATLPHEI 213
Query: 338 EKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ + ++ P + V +E + IKQ V EE K L+ + ++F N
Sbjct: 214 LEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCN 273
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+R DWL DK++EA F +++HG Q+ R+ + R G +LI+TDV RG+D+P
Sbjct: 274 TRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQ 333
Query: 457 VSLV 460
VSLV
Sbjct: 334 VSLV 337
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 148 bits (373), Expect = 2e-35
Identities = 122/451 (27%), Positives = 206/451 (45%), Gaps = 27/451 (5%)
Query: 30 PQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNE 89
PQP + S++ + ++R + + +L ++Q + +R++ +
Sbjct: 52 PQPPQYLQSQSDAQQYVQRGYPQQIQQQQQLQQQQQQQQQQQEQQWSRRA------QLPG 105
Query: 90 DESIVDNYLGKHWSEKKYEEMSTRDWR----ILSEDFNISSKGGTVEKPLRNWHELKLIP 145
D S +D + K + + + DW+ + D ++ T K N E +
Sbjct: 106 DPSYIDE-VEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKG--NEFEDYFLK 162
Query: 146 EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPP 205
DLL I + + +P+ IQ +IP + D + A G+GKT AF +P L K I P
Sbjct: 163 RDLLRGIY-EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK---IDP 218
Query: 206 LNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRD 265
N++ + A++L PTRELA Q + ++K K ++ GG SL + L
Sbjct: 219 ENNVIQ-----AVILVPTRELALQTSQVCKELSKYLK--IEVMVTTGGTSLRDDIMRLYQ 271
Query: 266 GCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQ 325
+LV TPGR K LV+DEADK++ F+ + ++ +RQ
Sbjct: 272 PVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP--ESRQ 329
Query: 326 TMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLP 385
+MF+ATF T++ + YLKKP + + + + + Q +V +E +K+ L F
Sbjct: 330 ILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFV-EERQKVHCLNTLFSK 388
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
IIF N + L K+ E + +H Q+ R RNG L+ T
Sbjct: 389 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 448
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
D+ RGIDI V++V+N FP++ +S++HRV
Sbjct: 449 DLFTRGIDIQAVNVVINFDFPRTSESYLHRV 479
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 147 bits (371), Expect = 4e-35
Identities = 107/321 (33%), Positives = 163/321 (50%), Gaps = 24/321 (7%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ + T +Q IP V+ +D + + TG+GKT+AFL PIL ++ G A
Sbjct: 24 FGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYD----GKGRGRPGVTA 79
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
+V+ PTRELA QI+ + L+ C +GG S+EE +++ I V TPGR
Sbjct: 80 VVITPTRELALQIRE----VAGLFDVKCEC--FIGGMSIEEDYKRMKEEFSIAVGTPGRL 133
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++ LVLDEADK++ FGFE++L +LAK NR T +F+AT + ++
Sbjct: 134 LEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLP--RNRVTGLFSATRNDSV 191
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+K++ +L+ P + VG E ++ I V EKL +L+ D + + I+F
Sbjct: 192 DKLSRVFLRNPVSINVGNNEMPVALEYI---VVSPMEKLLVLM-DIVTGRRC--IVFFAT 245
Query: 398 KRTADWLFDKLREARF-RATTLHGSKSQEQRE--HSLSLLRNGKVDILIATDVAGRGIDI 454
D+ + A F +HG SQ++R + R+G +L TDVA RGID
Sbjct: 246 CSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRDG---LLFCTDVAARGIDF 302
Query: 455 PNVSLVVNLQFPKSFDSFVHR 475
V LVV+ PK + S VHR
Sbjct: 303 RGVDLVVHFDVPKEYSSIVHR 323
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 147 bits (370), Expect = 5e-35
Identities = 110/364 (30%), Positives = 176/364 (48%), Gaps = 23/364 (6%)
Query: 113 RDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNV 172
+D R ++D +++KG T E + L E L+ I + + +P+ IQ IP
Sbjct: 31 KDTRPQTDDV-LNTKGNTFE-------DFYLKRELLMGIF--EAGFEKPSPIQEEAIPVA 80
Query: 173 INNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQH 232
I RD + A G+GKT AF++P L K+ P LN I AL++ PTRELA Q
Sbjct: 81 ITGRDILARAKNGTGKTAAFVIPTLEKVK--PKLNKIQ------ALIMVPTRELALQTSQ 132
Query: 233 EGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVN 292
+++ K C + + GG +L + L + ILV TPGR +
Sbjct: 133 VVRTLGKHCGISCMVTT--GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 190
Query: 293 TLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVT 352
++DEADKM+ F+ + IL+ Q+++F+ATF T+++ +L KP +
Sbjct: 191 LFIMDEADKMLSRDFKTIIEQILSFLPP--THQSLLFSATFPLTVKEFMVKHLHKPYEIN 248
Query: 353 VGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREAR 412
+ E + I Q +V +E +KL L F IIF N + L K+ +
Sbjct: 249 LMEELTLKGITQYYAFV-EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG 307
Query: 413 FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
+ H Q++R R GKV L+ +D+ RGIDI V++V+N FPK+ +++
Sbjct: 308 YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETY 367
Query: 473 VHRV 476
+HR+
Sbjct: 368 LHRI 371
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 146 bits (369), Expect = 7e-35
Identities = 108/341 (31%), Positives = 171/341 (49%), Gaps = 19/341 (5%)
Query: 143 LIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLP---ILIK 199
L+ E+ L I ++ + T IQ +I ++ RD + A TGSGKTLAFL+P +++K
Sbjct: 185 LVNENTLKAI-KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK 243
Query: 200 LHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEI 259
L +G L+L+PTRELA Q + + + I+GG +
Sbjct: 244 LR-------FMTRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL--IMGGSNRSAE 294
Query: 260 SANLRDGCDILVATPGRXXXXXXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKT 318
+ L +G +I+VATPGR K + LV+DEAD+++D GFE++L I+
Sbjct: 295 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354
Query: 319 ETISNRQTMMFTATFSPTIEKVANGYLKK-PSYVTVGGEESKPKIKQIVR-YVPDEEEKL 376
T RQTM+F+AT + +E +A LKK P YV V +++ + + + YV EK
Sbjct: 355 PT--RRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKR 412
Query: 377 KILVKDFLP-NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLR 435
+L+ FL N K +++F + + + ++ L +HG + Q +R +
Sbjct: 413 FLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFC 472
Query: 436 NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
N L+ TDVA RG+DIP V +V P ++HRV
Sbjct: 473 NADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRV 513
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 146 bits (369), Expect = 7e-35
Identities = 109/357 (30%), Positives = 166/357 (45%), Gaps = 25/357 (7%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPL- 216
+ +P++IQ+ I D I A +G+GKT F +L +L D L
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL------------DYALL 106
Query: 217 ---ALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVAT 273
ALVLAPTRELAQQI+ +++ + + + VGG S+ E L+ G ++V T
Sbjct: 107 QCQALVLAPTRELAQQIEKVMRALGDY--QGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Query: 274 PGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATF 333
PGR + VLDEAD+M+ GF+DQ+ I Q +F+AT
Sbjct: 165 PGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP--KIQVGVFSATM 222
Query: 334 SPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPII 392
P ++ ++ KP + V +E + IKQ V E+ KL+ L + +
Sbjct: 223 PPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSV 282
Query: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452
IF+N +R DWL DK+R + HG Q R+ + R+G +LI TD+ RGI
Sbjct: 283 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342
Query: 453 DIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVK 509
D+ VSLV+N P ++++HR+ F+T ++ LFD K
Sbjct: 343 DVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQR----MLFDIQK 395
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 146 bits (368), Expect = 9e-35
Identities = 110/357 (30%), Positives = 168/357 (46%), Gaps = 26/357 (7%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLA 221
T IQ +IP + D + A TGSGKTLAFL+P++ KL+ T+ DG AL+++
Sbjct: 65 TEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYR----EKWTEFDGLGALIIS 120
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXX 281
PTRELA QI + +TK+ +V G + +IL+ TPGR
Sbjct: 121 PTRELAMQIY---EVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHL 177
Query: 282 XXXXXX-XKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS-NRQTMMFTATFSPTIEK 339
+ LVLDEAD+ +D GF+ L I++ T+S +RQT++F+AT S ++
Sbjct: 178 DQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVS---TLSPSRQTLLFSATQSQSVAD 234
Query: 340 VANGYLKKPSYVTVGG----------EESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKA 389
+A L Y TVG E S P+ Q +KL IL + K
Sbjct: 235 LAR--LSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKC 292
Query: 390 PIIIFINYKRTADWLFDKLREAR--FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
+I+F++ + ++++ R+ + LHG + Q R +L + L ATDV
Sbjct: 293 KMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDV 352
Query: 448 AGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
RGID P V VV + P+ D+++HRV LT +E + + +L
Sbjct: 353 VARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRL 409
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 145 bits (367), Expect = 1e-34
Identities = 126/465 (27%), Positives = 211/465 (45%), Gaps = 35/465 (7%)
Query: 31 QPEEEEASKALSHTVI-------KRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLL 83
+P+ E+ ++ +I K+K N + D D+ +E V+ E +K+ L
Sbjct: 40 EPDHEDGDAKENNALIDEEPKKKKKKKNKKRGDTDDGEDEAVAEEEPKKK--KKKNKKLQ 97
Query: 84 KKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKL 143
++ DE D + + KK ++ +D SE+ + K EK L +
Sbjct: 98 QRGDTNDEE--DEVIAEEEEPKKKKKKQRKDTEAKSEEEEVEDK--EEEKKLEETSIMTN 153
Query: 144 IPEDLLNIITN------DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+ L++ N ++ + T IQ IP ++ D +G A TGSGKTLAFL+P +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 198 IKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLE 257
L+ + T +G LV+ PTRELA Q + + K + + ++GG +
Sbjct: 214 ELLYRV----KFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQ--TVGKVIGGEKRK 267
Query: 258 EISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILA 316
+ L G ++LVATPGR K + LV+DEAD++++ FE+ L IL
Sbjct: 268 TEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILN 327
Query: 317 KTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGG---EESKPKIKQIVRYVPDEE 373
RQT +F+AT S +E +A L P Y+ V E + ++Q VP
Sbjct: 328 LLP--KTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAM 385
Query: 374 EKLKILVKDFLPNY--KAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSL 431
L +L FL + K I++F + ++ + + R +F + G Q +R +
Sbjct: 386 RLLFLLT--FLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTF 443
Query: 432 SLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+ IL+ T+VA RG+D P+V +V P + ++HRV
Sbjct: 444 LQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRV 488
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 145 bits (367), Expect = 1e-34
Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 13/319 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P+ IQ +IP + D + A G+GKT AF +P+L K I P N++ + A
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK---IDPNNNVIQ-----A 195
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
++L PTRELA Q + ++K ++ GG SL + L +LV TPGR
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLN--IQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI 253
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
K LV+DEADK++ F+ L ++ NRQ +MF+ATF T+
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLP--QNRQFLMFSATFPVTV 311
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+ + +L+KP + + + + + Q +V +E +K+ L F IIF N
Sbjct: 312 KAFKDRHLRKPYVINLMDQLTLMGVTQYYAFV-EERQKVHCLNTLFSKLQINQSIIFCNS 370
Query: 398 KRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNV 457
+ L K+ E + +H Q+ R RNG L+ TD+ RGIDI V
Sbjct: 371 VNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAV 430
Query: 458 SLVVNLQFPKSFDSFVHRV 476
++V+N FP++ +S++HRV
Sbjct: 431 NVVINFDFPRTSESYLHRV 449
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 145 bits (367), Expect = 1e-34
Identities = 130/424 (30%), Positives = 198/424 (46%), Gaps = 45/424 (10%)
Query: 57 EDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWR 116
EDE + Q S+E +DL + + EDE DN + SE
Sbjct: 6 EDEQTQLQTSDEEEDLG----------SEEEQEDE---DNNHKEGDSEAA---------- 42
Query: 117 ILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNR 176
LS + + S+ E+ W +L L + L ++L + P+ IQR IP + +
Sbjct: 43 -LSGEDDKGSEDDAAEEQKLTWKDLGL--NEALCQACDELKWKAPSKIQREAIPVALQGK 99
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQS 236
D IG+A TGSGKT AF LPIL L P ALVL PTRELA QI + ++
Sbjct: 100 DVIGLAETGSGKTGAFALPILHALLENPQRY--------FALVLTPTRELAFQIGEQFEA 151
Query: 237 ITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLV 295
+ C +V VGG + L I++ATPGR K + LV
Sbjct: 152 LGSGIGIKCCVV--VGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLV 209
Query: 296 LDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGG 355
+DEAD++++ FE +L IL R+T +F+AT + ++K+ LK P V V
Sbjct: 210 MDEADRILNMDFEVELDKILKVLPR--ERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN 267
Query: 356 E-ESKPKIKQIVRYVPDEEEKLKI--LVKDFLPNYKAPIIIFINYKRTADWLFDKLREAR 412
+ ++ +++Q ++P + + + + ++ + N +IF + LR
Sbjct: 268 KYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN---SFMIFCSTCNNTVKTALMLRALG 324
Query: 413 FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
A LHG SQ +R +L+ + ILI+TDVA RG+DIP+V +VVN P +
Sbjct: 325 LAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDY 384
Query: 473 VHRV 476
+HRV
Sbjct: 385 IHRV 388
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 145 bits (366), Expect = 2e-34
Identities = 117/357 (32%), Positives = 176/357 (48%), Gaps = 27/357 (7%)
Query: 182 ASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLW 241
A TG+GKTLAF +PIL KL P G AL+L PTRELA QI + ++ K
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPY--------GIYALILTPTRELAFQIAEQFTALGKPI 241
Query: 242 KRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXX----XXXXKQVNTLVLD 297
C++ IVGG SL + L + ++VATPGR K++ VLD
Sbjct: 242 TLKCSV--IVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLD 299
Query: 298 EADKMIDFGFEDQLTTILAKTETISN-RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGE 356
EAD+M++ + DQL I E+IS RQT++ +AT + I + +KP + G+
Sbjct: 300 EADRMLEGQYNDQLKPIF---ESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGK 356
Query: 357 ESKPKI-----KQIVRYVPDEEEKLKILVKDFLP-NYKAPIIIFINYKRTADWLFDKLRE 410
+ + + K +V V ++ L +VK++ N K+ ++IF R L
Sbjct: 357 DDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEG 416
Query: 411 ARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFD 470
FR +LH Q+QR +LS R+ + ++I TDVA RG+DIP+V LVVN P+
Sbjct: 417 LGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPK 476
Query: 471 SFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMSKY 527
+++HRV F+T+ + A KK D E +S + ++KY
Sbjct: 477 TYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLD---ELKVSPKHVTKY 530
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 145 bits (365), Expect = 2e-34
Identities = 117/415 (28%), Positives = 198/415 (47%), Gaps = 25/415 (6%)
Query: 104 EKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTS 163
+K +E+ D +I + ++S G + ++ K++P+DL + + + N PT
Sbjct: 703 DKMFEDAVNNDDKIDFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKR-MKMNRPTP 761
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKL-HGIPPLNSIT-KHDGPLALVLA 221
IQR++ +++ D + A TGSGKTLAFL+P +IKL +T + P L++A
Sbjct: 762 IQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA 821
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRD--GCDILVATPGRXXX 279
PTREL Q + +T C + GG+S +LR +ILVAT GR
Sbjct: 822 PTRELVNQTFTTARQLTYETGLKCGLA--FGGYSRNANVQHLRSFSQLNILVATMGRLQD 879
Query: 280 XXXXXXXXXKQVNTLVLDEADKMIDFG-FEDQLTTILAKTETISNRQTMMFTATFSPTIE 338
++ +VLDEAD+M+D F ++++ I+ +QT++F+A+FS ++
Sbjct: 880 FVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGE-RTQQTVLFSASFSEDLQ 938
Query: 339 KVANGYLKKPSYVTVGGEE---SKPKIKQIVRYVPDEEEK---LKILVKD-----FLPNY 387
K Y + ++ + KI Q + VP E++ K+L D LP+
Sbjct: 939 SDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDA 998
Query: 388 ---KAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
K +IF+N + D L + A ++H ++QEQR+ +L R GK ++A
Sbjct: 999 PIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVA 1058
Query: 445 TDVAGRGIDIPNVSLVVNLQFP--KSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
++V RG++I + VVN P FD +V+R+ F+ E D
Sbjct: 1059 SNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVEND 1113
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 145 bits (365), Expect = 2e-34
Identities = 103/369 (27%), Positives = 167/369 (44%), Gaps = 41/369 (11%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+N+PT IQR TIP +++ +D + ++ TGSGKT AF++P+L KL G A
Sbjct: 44 FNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL-------KRRDTTGIRA 96
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+++PTRELA Q + + + C +VGG +EE + + + DIL+ATPGR
Sbjct: 97 LMVSPTRELALQTFKVVKELGRFTGLRC--ACLVGGDQIEEQFSTIHENPDILLATPGRL 154
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
V +V DEAD++ + GF+DQLT L + +RQT++F+AT +
Sbjct: 155 LHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP--ESRQTLLFSATLPKML 212
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYV--PDE----------------------- 372
A L P V + +E +V + PDE
Sbjct: 213 VDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFCFKKLLETSLK 272
Query: 373 -----EEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQR 427
++K+ +L K + ++F + +++ L A + ++ R
Sbjct: 273 KCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATAR 332
Query: 428 EHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXX 487
+ ++ + +IL+ TDVA RG+DIP + V+NL FP FVHRV
Sbjct: 333 KMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGT 392
Query: 488 XXXFLTEEE 496
+ +E
Sbjct: 393 AISLIANDE 401
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 144 bits (362), Expect = 4e-34
Identities = 129/446 (28%), Positives = 205/446 (45%), Gaps = 57/446 (12%)
Query: 77 RKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNI-----SSKGGTV 131
+K L K++Q E ES ++ +E E+ + R E+ + S K +
Sbjct: 92 QKKERLAKRKQKEAESSAKK--SENATETTTEKPKEQKKRKGGENGDTGKPKKSKKEASK 149
Query: 132 EKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNR-DFIGVASTGSGKTL 190
+ + W + +P ++L I + ++EPT IQ + +P + +R D +G A TGSGKTL
Sbjct: 150 KTDISAWKQFYFLPNEVLEAI-EQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTL 208
Query: 191 AFLLPILIKLHGIPPLNSITKHD---GPLALVLAPTRELAQQI-QHEGQSITKLWKRPCN 246
AF +P++ +L + T+ GP AL++APTREL QI +H I+ +
Sbjct: 209 AFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATS 268
Query: 247 IVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-----KQVNTLVLDEADK 301
IV + E I + R DI+VATPGR K + LV+DE D+
Sbjct: 269 IVGGLAQVKQERIISQQRP--DIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDR 326
Query: 302 MIDFGFEDQLTTILAKTETISNR---QTMMFTATFS-PTIEKVANGYLKKPSYVTVGGEE 357
M++ G+ +LT IL K S + QT++F+AT + + VA KK ++
Sbjct: 327 MVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELS----- 381
Query: 358 SKPKIKQIVRYVPDEEEKLKI-----------------------LVKD-----FLPNYKA 389
S+ KI+++++ E K K+ L KD L Y
Sbjct: 382 SQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPG 441
Query: 390 PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAG 449
I+F+N A L+ L+ LH Q+QR +L K +L+ATDVA
Sbjct: 442 RTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAA 501
Query: 450 RGIDIPNVSLVVNLQFPKSFDSFVHR 475
RG+DI + V++ Q PK + ++HR
Sbjct: 502 RGLDIQGIDHVIHYQVPKKVEIYIHR 527
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 144 bits (362), Expect = 4e-34
Identities = 101/333 (30%), Positives = 159/333 (47%), Gaps = 14/333 (4%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
D Y T +Q +T+P ++ +D + A TG+GKT+AFLLP + + PP + K
Sbjct: 71 DAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPP 130
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLE-EISANLRDGCDILVAT 273
LALV+ PTRELA Q E ++ K + + ++GG L E + C ILVAT
Sbjct: 131 ILALVICPTRELANQAATEANTLLK-YHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVAT 189
Query: 274 PGRXXXXXXXX---XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFT 330
PGR K V LVLDEAD ++D GF + I++ RQT +F+
Sbjct: 190 PGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVP--KERQTFLFS 247
Query: 331 ATFSPTIEKVANGYLKKP----SYVTVGGEESKPKIKQIVRYVP-DEEEKL--KILVKDF 383
AT + ++ L++ + V G E+ +++Q+ D L +L +
Sbjct: 248 ATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHI 307
Query: 384 LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
+ N +I+F + D L E +H K Q R + R K IL+
Sbjct: 308 MGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILV 367
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+DV+ RG+D P+V+LV+ + PK + ++HR+
Sbjct: 368 TSDVSARGVDYPDVTLVLQVGLPKDREQYIHRL 400
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 144 bits (362), Expect = 4e-34
Identities = 113/387 (29%), Positives = 186/387 (47%), Gaps = 27/387 (6%)
Query: 125 SSKGGTVEKPLRNWHELKL-IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAS 183
SS T+ K L + ELK + ED++ + + T +Q TIP + +++D + A+
Sbjct: 3 SSPPKTITKALPRFSELKPPLSEDIIEALDRS-GFEVCTPVQAETIPFLCSHKDVVVDAA 61
Query: 184 TGSGKTLAFLLP---ILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKL 240
TGSGKTLAFLLP I+ + + PP K + ++++PTREL+ QI +
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP-----KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
Query: 241 WKRPCNIVSIVGGHSLE-EISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDE 298
N V +VGG +E +++ +G ++L+ TPGR + + L+LDE
Sbjct: 117 LPN-VNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDE 175
Query: 299 ADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEES 358
AD+++D GF+ Q+ I+++ R+T +F+AT + + +A L+ V + G ES
Sbjct: 176 ADRLLDMGFQKQVNYIISRLP--KQRRTGLFSATQTQAVADLAKAGLRNAMEV-ISGAES 232
Query: 359 KPKIKQ--IVRYVPDE-EEKLKILVKDFLPNYKAPIIIFINYKRTADWL------FDKLR 409
K K Y+ E ++K LV + N +++F D+ L+
Sbjct: 233 KSKTSSGLYCEYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLK 292
Query: 410 EARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSF 469
F +T HG Q+ R+ +L+ +L+ TDVA RG+DIP + VV P+
Sbjct: 293 SISFFST--HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDP 350
Query: 470 DSFVHRVXXXXXXXXXXXXXXFLTEEE 496
D F+HRV FL +E
Sbjct: 351 DVFIHRVGRTARMERQGRAIVFLMPKE 377
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 144 bits (362), Expect = 4e-34
Identities = 132/521 (25%), Positives = 228/521 (43%), Gaps = 61/521 (11%)
Query: 16 PAKKPRFLIKKRTF--------------PQPEEEEASKALSHTVIKRKDNYRNLDEDELY 61
P+KKP L KK P P++++ + I+ ++ D+DE
Sbjct: 27 PSKKPEKLSKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDDE-- 84
Query: 62 EEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRIL--- 118
+E ++E DL +A + + +D+ D E + E + + ++L
Sbjct: 85 QEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQED--------EDEEEPVPAKKTKLLPNK 136
Query: 119 -----------SEDFNISSKGGTVE---KPLRNWHELK-LIPEDLLNIITNDLHYNEPTS 163
E F + S ++ R++ LK + E L I ++ + E T
Sbjct: 137 SKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEATLRAI-KEMGFTEMTE 195
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLP---ILIKLHGIPPLNSITKHDGPLALVL 220
IQ ++ ++ RD +G A TGSGKTLAFL+P ++ KL +P +G +++
Sbjct: 196 IQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMP-------RNGTGVIII 248
Query: 221 APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXX 280
+PTREL+ Q + + +V +GG + + S L G +ILVATPGR
Sbjct: 249 SPTRELSMQTFGVLKELMAHHHHTYGLV--MGGSNRQVESEKLGKGINILVATPGRLLDH 306
Query: 281 XXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEK 339
K + L++DE D++++ GFE++L I+ RQTM+F+AT + IE
Sbjct: 307 LQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP--KRRQTMLFSATQTARIEA 364
Query: 340 VANGYLK-KPSYVTVGGEESKPKIKQIVR--YVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
++ LK +P YV V + + + + V E++L +L N K +++F +
Sbjct: 365 LSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFS 424
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+ + + T++HG + Q +R + N + IL+ TDVA RG+DIP
Sbjct: 425 SCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQ 484
Query: 457 VSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
V +V P ++HRV L E+
Sbjct: 485 VDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEE 525
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 143 bits (360), Expect = 7e-34
Identities = 99/348 (28%), Positives = 174/348 (49%), Gaps = 21/348 (6%)
Query: 133 KPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAF 192
+P+ +++++ I ED+L + + + +P++IQ+ + ++ RD I A +G+GKT
Sbjct: 32 EPITSFNDMG-IKEDVLRGVY-EYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMI 89
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSI---TKLWKRPCNIVS 249
L + + T AL+L+PTRELA Q + Q+I + C
Sbjct: 90 ALSVCQVVD--------TSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHAC---- 137
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFED 309
+GG+S+ E L G ++ TPGR + + L+LDE+D+M+ GF+D
Sbjct: 138 -IGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKD 196
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRY 368
Q+ + + Q + +AT I ++ + ++ +P + V +E + IKQ
Sbjct: 197 QIYDVYRYLPP--DLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVA 254
Query: 369 VPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQRE 428
V EE K L + +IF N KR D+L +K+R F +++HG Q++R+
Sbjct: 255 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERD 314
Query: 429 HSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
++ R+G +LI TDV RGID+ VSLV+N P + + ++HR+
Sbjct: 315 AIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 362
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 142 bits (359), Expect = 1e-33
Identities = 109/389 (28%), Positives = 177/389 (45%), Gaps = 29/389 (7%)
Query: 116 RILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN 175
R+LSED + G W L L P L I D+ Y+ P+ +Q ++IP+V+
Sbjct: 96 RLLSEDVRETEGIG--------WESLGLGPVLLKRI--RDIGYDFPSPVQVASIPHVLGG 145
Query: 176 RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPL-ALVLAPTRELAQQIQHEG 234
++ + + G+GKT ++++P+L N I + + ++L P RELA QI
Sbjct: 146 KNLLVRSKNGTGKTASYIVPML---------NMINSSELSIQGIILVPIRELALQISRN- 195
Query: 235 QSITKLWKRPCNIVS--IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVN 292
K ++S +VGG S+++ + +G ++V TPGR +
Sbjct: 196 ---VKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRV 252
Query: 293 TLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVT 352
LV DEADK++D F + +T +L +Q ++++ATF + Y+K P +
Sbjct: 253 ILVFDEADKLLDVTFGETVTKLLDLLPR--EKQMLLYSATFPYFVTGFIRRYMKNPLCIN 310
Query: 353 VGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREAR 412
+ E + +KQ YV E KL L L +IF N +T + L K+ E
Sbjct: 311 LMKELAPVGVKQFYTYVKPSE-KLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITEMG 369
Query: 413 FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
+ +H +QE R GK IL+ATD+ RG+D PN + V+N KS +S+
Sbjct: 370 LPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESY 429
Query: 473 VHRVXXXXXXXXXXXXXXFLTEEEDHSAM 501
+HR+ +T EE M
Sbjct: 430 LHRIGRAGRFGAPGVAISLVTTEEKEMLM 458
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 142 bits (358), Expect = 1e-33
Identities = 102/338 (30%), Positives = 159/338 (46%), Gaps = 25/338 (7%)
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALV 219
+PT++Q STIP+++ R + A TGSGKTL++LLP+L +L G P L+S+ P LV
Sbjct: 150 QPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSL-PIPAPRGLV 208
Query: 220 LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL--RDGCDILVATPGRX 277
L P+RELAQQ++ Q + + + + GGH + I L + D+LVATPG
Sbjct: 209 LVPSRELAQQVRAVAQPLGR--SLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGAL 266
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS-----------NRQT 326
+Q++ LVLDEAD ++D F + + IL K+ Q
Sbjct: 267 WKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQL 326
Query: 327 MMFTATFSPTIEKVANGYLKKPSYVTVGGEE---SKPKIKQI---VRYVPDEEEKLKILV 380
++ ATF + ++ N + T+ + P +KQ ++ E + IL
Sbjct: 327 VLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADKVAELVHILK 386
Query: 381 KDFLPNYKAP---IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNG 437
P +++F N T +WL L + + + L G R +
Sbjct: 387 HRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKS 446
Query: 438 KVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
DIL+ TD+A RG+D V LVVN FP + ++HR
Sbjct: 447 SRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHR 484
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 140 bits (354), Expect = 4e-33
Identities = 101/327 (30%), Positives = 162/327 (48%), Gaps = 16/327 (4%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
+ Y T IQ+ TI + +D +G A TGSGKTLAFL+P+L L+ + T DG
Sbjct: 86 EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRL----QWTSTDG 141
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
L+++PTRELA Q + + K + I+GG L+ A + +ILV TP
Sbjct: 142 LGVLIISPTRELAYQTFEVLRKVGK--NHDFSAGLIIGGKDLKH-EAERINNINILVCTP 198
Query: 275 GR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATF 333
GR + LVLDEAD+++D GF D + ++ RQT++F+AT
Sbjct: 199 GRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP--KKRQTLLFSATQ 256
Query: 334 SPTIEKVANGYLKKPSYVTV--GGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPI 391
+ +++ +A LK P YV V + S P + V + ++K+ +L + K
Sbjct: 257 TKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKS 316
Query: 392 IIFINYKRTADWL---FDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
I+F + + +L F +LR LHG + Q +R + + +L ATD+A
Sbjct: 317 IVFFSSCKEVQYLYRVFCRLRPG-VSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIA 375
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHR 475
RG+D P V+ V+ P+ ++++HR
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHR 402
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 140 bits (352), Expect = 6e-33
Identities = 103/348 (29%), Positives = 171/348 (48%), Gaps = 21/348 (6%)
Query: 133 KPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAF 192
KP++++ ++ + + L + D Y +P+ IQ+ + ++ RD I A +G+GKT
Sbjct: 19 KPIKSFDDMGMNDKVLRGVY--DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSM- 75
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSI---TKLWKRPCNIVS 249
I I + I ++S LVL+P+RELA Q + Q+I T + C
Sbjct: 76 ---IAISVCQIVNISSRKVQ----VLVLSPSRELASQTEKTIQAIGAHTNIQAHAC---- 124
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFED 309
+GG S+ E L G + TPGR K V LVLDE+D+M+ G +D
Sbjct: 125 -IGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKD 183
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRY 368
Q+ + + Q + +AT I ++ ++ P + V +E + IKQ
Sbjct: 184 QIYDVYRALP--HDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVD 241
Query: 369 VPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQRE 428
V EE K L + IIF N ++ DWL +K+R + F +++HG K Q++R+
Sbjct: 242 VDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERD 301
Query: 429 HSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
++ R+ K +LIA+DV RGID+ VS V+N P + + ++HR+
Sbjct: 302 DIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI 349
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 139 bits (350), Expect = 1e-32
Identities = 113/392 (28%), Positives = 181/392 (45%), Gaps = 60/392 (15%)
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+HEL L P L++ I L + TS+Q+ +IP ++ RD + + TGSGKTLA+ +P++
Sbjct: 232 FHELGLHPH-LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 290
Query: 198 IKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVS--IVGGHS 255
L + + I + DGP ALVL PTRELA Q ++ KL K IV ++GG
Sbjct: 291 QSLQAME--SKIQRSDGPYALVLVPTRELALQ---SFDTVQKLLKPFTWIVPGVLMGGEK 345
Query: 256 LEEISANLRDGCDILVATPGR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
+ A LR G +IL++TPGR ++ LV DEAD+++D GFE +T I
Sbjct: 346 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 405
Query: 315 L-AKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTV---GGEESKPK--------- 361
L A RQ ++ +AT + + ++A+ L P ++V ++ PK
Sbjct: 406 LNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCP 465
Query: 362 ---------------IKQIVRYVPDEEEKLKILVKDFLPNYK----APIIIFINYKRTAD 402
+KQ V VP + +L L L K +++F + +
Sbjct: 466 PPAGDKLDSFAIPESLKQHVTVVP-SKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVE 524
Query: 403 WLFDKLREA------------------RFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
+ + + R + LHG QE+R + + +L+
Sbjct: 525 FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLC 584
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
TDVA RG+D+P V+ +V P S ++HR+
Sbjct: 585 TDVAARGLDLPQVTWIVQYNAPSSPAEYIHRI 616
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 139 bits (349), Expect = 1e-32
Identities = 119/469 (25%), Positives = 215/469 (45%), Gaps = 42/469 (8%)
Query: 58 DELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTR--DW 115
D L ++ NE +D ++ K +++ E D+ K EE T+ D
Sbjct: 10 DLLASLKIDNEKEDTSEVSTKETV-----KSQPEKTADSIKPAEKLVPKVEEKKTKQEDS 64
Query: 116 RILSEDFNISSKGGTVE----KPL---RNWHELKLIPEDLLNIITNDLHYNEPTSIQRST 168
++S ++ + K ++ PL +++ EL L PE L I + + +P+ IQ
Sbjct: 65 NLISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYA--MKFQKPSKIQERA 122
Query: 169 IPNVINN--RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTREL 226
+P +++N R+ I + +G+GKT AF L +L +++ + P A+ LAP+REL
Sbjct: 123 LPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN--------PEDASPQAICLAPSREL 174
Query: 227 AQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXX 286
A+Q Q + K K ++ ++I+A ++V TPG
Sbjct: 175 ARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQ------VIVGTPGTVLDLMRRKLM 228
Query: 287 XXKQVNTLVLDEADKMIDF-GFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYL 345
+++ VLDEAD M+D G DQ I K + Q ++F+ATF+ + + A +
Sbjct: 229 QLQKIKIFVLDEADNMLDQQGLGDQC--IRVKRFLPKDTQLVLFSATFADAVRQYAKKIV 286
Query: 346 KKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWL 404
+ + + E + IKQ+ +E +K +L + + IIF+ K+TA+ L
Sbjct: 287 PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVL 346
Query: 405 FDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
+ KL+ + LHG ++R+ + R G+ +LI T+V RGIDIP VS+VVN
Sbjct: 347 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 406
Query: 465 FPKSFD------SFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDY 507
P + +++HR+ F+ ++ + ++ + Y
Sbjct: 407 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 455
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 139 bits (349), Expect = 1e-32
Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 21/331 (6%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKL----HGIPPLNSITK 211
L + P+ IQ +P + +D IG+A TGSGKT AF +PIL L + P
Sbjct: 27 LGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRP 86
Query: 212 HDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILV 271
A VL+PTRELA QI + +++ C + +VGG ++ + + G V
Sbjct: 87 DPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV--LVGG--IDRMQQTIALGKRPHV 142
Query: 272 ATPGRX-XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFT 330
ATPGR K + LVLDEAD++++ FE L IL E R+T +F+
Sbjct: 143 ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE--EIPLERKTFLFS 200
Query: 331 ATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQIVRYVPDE-EEKLKILVKDFLPNYK 388
AT + + K+ L+ P + + S +KQ R+V + ++ + + +P
Sbjct: 201 ATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPEST 260
Query: 389 APIIIFINYKRTAD---WLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+ I + RT D +L LR FRA + G +Q +R +L+ + G+ +IL+ T
Sbjct: 261 SMI-----FTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCT 315
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DVA RG+DIP+V +V+N P + ++HRV
Sbjct: 316 DVASRGLDIPSVDVVINYDIPTNSKDYIHRV 346
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 136 bits (343), Expect = 7e-32
Identities = 94/319 (29%), Positives = 149/319 (46%), Gaps = 13/319 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ P+ IQ +IP ++ RD + A G+GKT AF++P L K+ TK
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVD--------TKKSKIQT 115
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L PTRELA Q +++ K ++ GG +L + L D I+V TPGR
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMN--VKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRV 173
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
+ T V+DEADK++ F + +L+ NRQ +++ATF +
Sbjct: 174 LDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP--KNRQISLYSATFPLIV 231
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+ + +L KP + + E + + Q +V DE +K+ L F IIF N
Sbjct: 232 KNFMDKHLNKPYEINLMDELTLRGVTQYYAFV-DESQKVHCLNTLFSKLQINQSIIFCNS 290
Query: 398 KRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNV 457
+ L K+ E + H Q R RNG L+ +D+ RGIDI V
Sbjct: 291 TNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAV 350
Query: 458 SLVVNLQFPKSFDSFVHRV 476
++V+N FPK+ ++++HR+
Sbjct: 351 NVVINFDFPKNAETYLHRI 369
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 135 bits (340), Expect = 2e-31
Identities = 109/375 (29%), Positives = 169/375 (45%), Gaps = 19/375 (5%)
Query: 143 LIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHG 202
L+ +LL IT D + P+ +Q+ IP I D + A +G GKT F+L L ++
Sbjct: 57 LLKPELLRAIT-DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEP 115
Query: 203 IPPLNSITKHDGPLA-LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISA 261
+ DG ++ LVL TRELA QI++E +K + GG ++++
Sbjct: 116 V---------DGEVSVLVLCHTRELAFQIKNEYARFSK-YLPDVRTAVFYGGINIKQDME 165
Query: 262 NLRDGCD---ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTILAK 317
+D I+VATPGR V VLDE DK+++ + +
Sbjct: 166 AFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRA 225
Query: 318 TETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLK 377
T +Q MMF+AT S I + +++ P + V E YV EE+
Sbjct: 226 TPP--QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN 283
Query: 378 ILVKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRN 436
+ D L + + ++IF+ A+ L LRE F + +HG QE+R ++
Sbjct: 284 RKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKD 343
Query: 437 GKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
I +ATDV GRGIDI V++V+N P S DS++HRV F + EE
Sbjct: 344 FDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEE 403
Query: 497 DHSAMAKLFDYVKKN 511
D + K+ + + N
Sbjct: 404 DSQILDKIQERFEVN 418
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 135 bits (340), Expect = 2e-31
Identities = 91/331 (27%), Positives = 165/331 (49%), Gaps = 13/331 (3%)
Query: 150 NIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI 209
+I ++ + T IQ +I ++ +D +G A TGSGKTLAFL+P + L
Sbjct: 101 SIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFK----ERF 156
Query: 210 TKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDI 269
+ +G +V+ PTRELA Q ++ + + K + ++V +GG++ + + G ++
Sbjct: 157 SPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMV--IGGNNRRSEAQRIASGSNL 214
Query: 270 LVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMM 328
++ATPGR K + LV+DEAD++++ FE+ + IL RQT +
Sbjct: 215 VIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP--KTRQTAL 272
Query: 329 FTATFSPTIEKVANGYLKKPSYVTVGGEESKPK---IKQIVRYVPDEEEKLKILVKDFLP 385
F+AT + ++ +A L P +V V K ++Q VP ++ +L +L+
Sbjct: 273 FSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQ-RLILLISFLKK 331
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
N I++F + ++ + + ++ + + +HG Q +R + K IL+ T
Sbjct: 332 NLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCT 391
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DVA RG+DIP+V ++ P ++HRV
Sbjct: 392 DVAARGLDIPSVDWIIQYDPPDKPTEYIHRV 422
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 135 bits (339), Expect = 2e-31
Identities = 135/532 (25%), Positives = 225/532 (41%), Gaps = 80/532 (15%)
Query: 46 IKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQ-------NEDESIVDNYL 98
+ + N + +D+ E S + L K+ D +K+ + + DE N
Sbjct: 71 VLKDSNKEKVGDDQESVENESGSDSESELLEFKNLDDIKEGELSAASYSSSDEDEQGNIE 130
Query: 99 GKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEK----PLRNWHELKLIPEDLLNIITN 154
++ + D +L E N+ +K ++ L W L + +L + N
Sbjct: 131 SSKLTDPSEDVDEDVDEDVLKE--NVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQN 188
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
L++ PT IQ+ +IP ++ D +G ASTGSGKTLA+ +PI+ KL N K+
Sbjct: 189 -LNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLIS----NFSQKNKK 243
Query: 215 PLALVLAPTRELAQQIQHEGQSITK--LWKRPCNIVSIVGGHSLEEISANLR--DGCDIL 270
P++L+ PTRELA Q+ + I + L K +I+S+ GG S+++ L+ + I+
Sbjct: 244 PISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIV 303
Query: 271 VATPGRXXXXXXXXXXXXK---QVNTLVLDEADKMIDFGFEDQLTTILAK--TETISNR- 324
+ATPGR K +VNTL+LDEAD+++ G D+ I+ E NR
Sbjct: 304 IATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRE 363
Query: 325 ---------QTMMFTATFS-PTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYV----- 369
QT++F+ATFS +K+++ K +E I+ ++ +
Sbjct: 364 NSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSK 423
Query: 370 -----PDEEEKLKILVKD----------------FLPNYKAPIIIFINYKRTADWLFDKL 408
+ E K+ +K+ FL + +IF N + L L
Sbjct: 424 PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYL 483
Query: 409 REARFRATTLHGSKSQEQREHSLSLLRNGKV----------------DILIATDVAGRGI 452
A +H S +Q+ R SL + +LIA+DVA RG+
Sbjct: 484 NNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGL 543
Query: 453 DIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
DIP V V++ P+S D ++HR + +E + KL
Sbjct: 544 DIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKL 595
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 135 bits (339), Expect = 2e-31
Identities = 85/249 (34%), Positives = 123/249 (49%), Gaps = 15/249 (6%)
Query: 248 VSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGF 307
V+++GG S E+ L GC+I++ATPG +VLDEAD+MID GF
Sbjct: 364 VAVIGGISREDWGFRLLMGCEIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGF 423
Query: 308 EDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVR 367
E + IL R S EK+ + G + +++Q+
Sbjct: 424 EPDVQKILEHMPQSEARHDE------SEDPEKMLANFES-------GKRKPHERVEQV-- 468
Query: 368 YVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQR 427
++ E EK K L++ + I IF+N K+ D L L + + A TLHG K QEQR
Sbjct: 469 FLMSESEKRKKLLEILKQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 528
Query: 428 EHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXX 487
E +LS L+ G D+L+ TDVAG GIDI +VS+VVN K+ D ++HR+
Sbjct: 529 EFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGV 588
Query: 488 XXXFLTEEE 496
FLT+E+
Sbjct: 589 AITFLTKED 597
Score = 75.9 bits (185), Expect = 1e-13
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 18 KKPRFLIKKRTFPQPEEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPD---DLLF 74
++ R L+++R + ++ K L + +R + + +EDE ++++ E D +L
Sbjct: 172 EQQRMLVEERKKRKQFQDLGRKMLEDSQ-ERMEPETSGNEDEKGQQKIREEKDKSKELHA 230
Query: 75 LARKSADLLKKRQ----------------NEDESIVDNYLGKHWSEKKYEEMSTRDWRIL 118
+ +KKR +ED SI N L K +KK +EM+ RDW +
Sbjct: 231 IKEHYLGGIKKRHQTRHLNDRKFVFEGDASEDTSIDYNPLYKERHQKKLDEMTDRDWWLF 290
Query: 119 SEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDF 178
E ++I++KGG + P+R+W E L+P +L +I + Y E T IQR IP + NRD
Sbjct: 291 REGYSITTKGGKIPNPIRSWKESSLLPH-ILEVI-DKCGYKESTPIQRQAIPFGLQNRDI 348
Query: 179 IG 180
IG
Sbjct: 349 IG 350
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 134 bits (338), Expect = 3e-31
Identities = 110/396 (27%), Positives = 187/396 (46%), Gaps = 29/396 (7%)
Query: 148 LLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLN 207
LLN ++ + +P+ IQ +IP + R+ + A TGSGKTLAF LP++ ++ +
Sbjct: 137 LLNRLSEN-SIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRA 195
Query: 208 SITKHDGP--LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRD 265
+ + LA+VL PTRELA Q+ T+ K N S EE
Sbjct: 196 DYSSSNSSKLLAVVLEPTRELA------AQTYTEFLKYCANTSISAANFSGEETDIQ--- 246
Query: 266 GCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMI------DFGFEDQLTTILAKTE 319
DILV+TP R + LV+DE+D++ D F +QL I +
Sbjct: 247 HADILVSTPNRIVFHLDKIDTSS--LRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACD 304
Query: 320 TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQIVRYVPDEEEKLKI 378
R F+ATFS +EK + + V VG S +KQ + Y E+ K KI
Sbjct: 305 AKCTR-VAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGK-KI 362
Query: 379 LVKDFL-PNYKAPIIIFINYKRTADWLFDKLR--EARFRATTLHGSKSQEQREHSLSLLR 435
+++ L ++K P ++F+ K A L L ++ + +++ KS ++R+ ++ R
Sbjct: 363 AIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFR 422
Query: 436 NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEE 495
G++ +L+ T++ GRG+D+ +V LV+N P S S++HRV + T +
Sbjct: 423 RGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFT-D 481
Query: 496 EDHSAMAKLFDYVKKNDFTGENYISKEAMSKYNVDK 531
D + + ++++ F Y+ + M K + D+
Sbjct: 482 ADMKYIKSIATVIRQSGFDVPEYLME--MKKVSRDR 515
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 134 bits (336), Expect = 5e-31
Identities = 122/444 (27%), Positives = 201/444 (44%), Gaps = 56/444 (12%)
Query: 63 EQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDF 122
E+ +P+ +++++ KK + +I LG + K Y E ST L E+
Sbjct: 58 EKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFST-----LEEED 112
Query: 123 NISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVA 182
+S G V W L PE L ++ + +++P IQ IP D IG A
Sbjct: 113 EHNSHGVDVSA----WAHFSLSPEMLGSL--SKAGFSKPMPIQSLVIPEASIGFDIIGKA 166
Query: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242
TGSGKTLAF +PIL H + +++ ALV+APTRELA QI + I
Sbjct: 167 DTGSGKTLAFGIPILE--HCLRNVDAKYVQ----ALVVAPTRELAHQICQHFELIKP--S 218
Query: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGR--XXXXXXXXXXXXKQVNTLVLDEAD 300
++SI GG ++++ L ++VATPGR K++ LVLDEAD
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEAD 278
Query: 301 KMIDFGFEDQLTTILAKTETISN-----RQTMMFTATFSPTIEKVANGYLK--------- 346
+++ ++L+ +L E + N RQT +F+ATF +++ +K
Sbjct: 279 RLLQKSHFEELSKLL---EILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNS 335
Query: 347 -------------KPSYVTVGGEESKPK--IKQIVRYVPDEEEKLKILVKDFLPNYKAPI 391
KP ++ + + ++ ++ P E++ + + + Y
Sbjct: 336 PMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKD---LYLYYLIMRYPGKT 392
Query: 392 IIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRG 451
++F N + L E + + LH Q++R SL +N +L+ TDVA RG
Sbjct: 393 MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 452 IDIPNVSLVVNLQFPKSFDSFVHR 475
IDIP+V+ V++ P + D +VHR
Sbjct: 453 IDIPSVTHVIHYHVPHTADMYVHR 476
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 132 bits (333), Expect = 1e-30
Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 19/345 (5%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P+ IQ ++I + +D + A G+GKT A+ +P++ K+ P L +I A
Sbjct: 63 WEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQ--PALKAIQ------A 114
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
+V+ PTRELA Q ++K + ++ GG L + L +++ATPGR
Sbjct: 115 MVIVPTRELALQTSQICVELSKHIQ--LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRI 172
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFE---DQLTTILAKTETISNRQTMMFTATFS 334
+ TLVLDEADK++ F+ D+L L K RQ M+++ATF
Sbjct: 173 LDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPK-----ERQVMLYSATFP 227
Query: 335 PTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIF 394
T+ ++ KP + + E + + Q +V E++K+ L F IIF
Sbjct: 228 NTVTSFMQKHMHKPYEINLMEELTLLGVTQYYAFV-QEKQKVHCLNTLFRKLQINQSIIF 286
Query: 395 INYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDI 454
N + + L K+ E + +H +Q R R G L+ +D+ RGIDI
Sbjct: 287 CNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDI 346
Query: 455 PNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHS 499
V++V+N FP++ ++++HR+ +T E+ H+
Sbjct: 347 QAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHT 391
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 132 bits (332), Expect = 1e-30
Identities = 124/440 (28%), Positives = 191/440 (43%), Gaps = 41/440 (9%)
Query: 81 DLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISS------KGGTVEKP 134
DLL+ NE E +D + K E T +E N ++ KG V
Sbjct: 8 DLLEYSDNEQEIQID-------ASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH 60
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL 194
+ + L PE II D + P+ +Q+ TIP I+ D + A +G GKT F+L
Sbjct: 61 STGFKDFLLKPELSRAII--DCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL 118
Query: 195 PILIKLHGIPPLNSITKHDGPLALV-LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGG 253
L +L +P G +A+V + RELA QI++E +K + GG
Sbjct: 119 STLQQLDPVP---------GEVAVVVICNARELAYQIRNEYLRFSK-YMPDVKTAVFYGG 168
Query: 254 HSLE---EISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFED 309
+ E+ N I+VATPGR V V+DE DK+++
Sbjct: 169 TPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRR 228
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYV 369
+ I T ++Q MMF+AT S I + +L+ P + V +E+K + + +Y
Sbjct: 229 DVQEIFRATPR--DKQVMMFSATLSQEIRPICRRFLQNPLEIFVD-DEAKLTLHGLQQYY 285
Query: 370 PDEEE-----KLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQ 424
EE KL L+ D N +IIF+ A+ L L + F A T+HG Q
Sbjct: 286 IKLEEREKNRKLAQLLDDLEFNQ---VIIFVKSTTRANELTKLLNASNFPAITVHGHMKQ 342
Query: 425 EQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXX 484
E+R ++ + I ++TDV GRGIDI ++L +N D ++HRV
Sbjct: 343 EERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGT 402
Query: 485 XXXXXXFLTEEEDHSAMAKL 504
F++ +ED +AK+
Sbjct: 403 KGLAISFVSSKEDEEVLAKI 422
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 131 bits (329), Expect = 3e-30
Identities = 115/440 (26%), Positives = 189/440 (42%), Gaps = 91/440 (20%)
Query: 148 LLNIITNDLHYNEPTSIQRSTIPNVINN---RDFIGVASTGSGKTLAFLLPILIKLHGIP 204
L++ + + +PTSIQ+ IP +I N DF A TGSGKTL++LLPI+ + +
Sbjct: 154 LVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMD 213
Query: 205 PLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKL--WKRPCNIVSIVGGHSLEEISAN 262
+ + G ALV+APTRELA QI H ++ + PC ++GG + A
Sbjct: 214 --THVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPC---LLIGGERKKSEKAR 268
Query: 263 LRDGCDILVATPGRXXXXXXXXXXXXKQVNT----LVLDEADKMIDFGFEDQLTTILAKT 318
LR GC+ ++ TPGR +Q++ +VLDE DK+++ GF++ ++ I+
Sbjct: 269 LRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIV 328
Query: 319 ETISNRQT-----------MMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVR 367
I M+ +AT + + ++ N LK ++ G + K IV
Sbjct: 329 HDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTK----KDSDIVT 384
Query: 368 YVPDE--------EEKLKI---------LVKDFLPNYKAP----IIIFINYKRTADWLFD 406
PD+ KL++ + KDF+ + + I+F++ + ++ +D
Sbjct: 385 VAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYD 444
Query: 407 KL-------------------------------REARFRATTLHGSKSQEQREHSL---- 431
R+ LHGS SQ+ R +L
Sbjct: 445 AFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFA 504
Query: 432 --SLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXX 489
+ GK I+ TDVA RG+D+P+V V+ L P + + +HRV
Sbjct: 505 RDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESL 564
Query: 490 XFLTEEEDHSAMAKLFDYVK 509
FL E+ K DY++
Sbjct: 565 LFLLPGEEE----KYMDYIQ 580
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 131 bits (329), Expect = 3e-30
Identities = 115/392 (29%), Positives = 177/392 (44%), Gaps = 24/392 (6%)
Query: 127 KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGS 186
KG V + + L PE L I+ D + P+ +Q IP I D + A +G
Sbjct: 35 KGSYVSIHSSGFRDFLLKPELLRAIV--DCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 92
Query: 187 GKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
GKT F +L L I P+N LV+ TRELA QI E + +K P
Sbjct: 93 GKTAVF---VLATLQQIEPVNGQVT-----VLVMCHTRELAFQISKEYERFSKYM--PSV 142
Query: 247 IVSIV-GGHSLEEISANLRDGCD-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID 304
VS+ GG S+++ L+ C ++V TPGR K V VLDE DKM++
Sbjct: 143 KVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLE 202
Query: 305 -FGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIK 363
+ I T +Q MMF+AT S I V +++ P V V +E+K +
Sbjct: 203 QLDMRRDVQEIFRLTP--HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVD-DETKLTLH 259
Query: 364 QIVRY---VPDEEEKLKILVKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLH 419
+ +Y + D E+ K+ D L + +IIF+ + L L E F A +H
Sbjct: 260 GLQQYYVKLKDSEKNRKLF--DLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIH 317
Query: 420 GSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXX 479
+QE+R ++ + IL+AT++ GRG+DI V++V N P+ D+++HRV
Sbjct: 318 RGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 377
Query: 480 XXXXXXXXXXXFLTEEEDHSAMAKLFDYVKKN 511
F+++E D + + D + N
Sbjct: 378 GRFGTKGLAITFVSDENDAKILNDVQDRFEVN 409
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 130 bits (328), Expect = 4e-30
Identities = 94/331 (28%), Positives = 162/331 (48%), Gaps = 24/331 (7%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
L + T IQ +I ++ +D + A TGSGKTLAFLLP + LH + + +H+G
Sbjct: 86 LGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKL----NWKQHNGT 141
Query: 216 LALVLAPTRELAQQIQH------EGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDI 269
++++PTREL+ Q EG ++T ++GG + L G I
Sbjct: 142 GVIIVSPTRELSMQTYGVLSELLEGSNLT--------YGLVMGGSNRSAEKDKLAKGVSI 193
Query: 270 LVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMM 328
LVATPGR + + L++DEAD+++D GFE ++ +L RQ+M+
Sbjct: 194 LVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLP--KQRQSML 251
Query: 329 FTATFSPTIEKVANGYL-KKPSYVTVGGEESKPKIKQIVR-YVPDEEEKLKILVKDFLPN 386
F+AT SP ++++ L P V+V + + ++ + + Y+ +K +L+ FL
Sbjct: 252 FSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKK 311
Query: 387 YKAP-IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
K +++F + + + + L ++HG + Q++R + + IL+ T
Sbjct: 312 NKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCT 371
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DVA RG+DIP V +V ++HRV
Sbjct: 372 DVAARGLDIPAVDWIVQYDPTDEPREYIHRV 402
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 130 bits (328), Expect = 4e-30
Identities = 108/363 (29%), Positives = 158/363 (42%), Gaps = 17/363 (4%)
Query: 143 LIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHG 202
L+ +LL I D + P+ +Q IP I D I A +G GKT F+L L ++
Sbjct: 52 LLKPELLRAIV-DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP 110
Query: 203 IPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV-GGHSLEEISA 261
P S ALVL TRELA QI +E + P VS+ GG +++
Sbjct: 111 SPGQVS--------ALVLCHTRELAYQICNEFVRFSTYL--PDTKVSVFYGGVNIKIHKD 160
Query: 262 NLRDGCD-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTILAKTE 319
L++ C I+V TPGR K V +LDE DKM++ + I T
Sbjct: 161 LLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
Query: 320 TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKIL 379
++Q MMF+AT S I V +++ P + V E + Y+ E +
Sbjct: 221 --HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRK 278
Query: 380 VKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGK 438
+ D L ++IF+ A L L E F + +H SQE+R + G
Sbjct: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 439 VDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDH 498
IL+ATD+ GRGIDI V++V+N P S D+++HRV F+ D
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 499 SAM 501
+
Sbjct: 399 EVL 401
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 130 bits (328), Expect = 4e-30
Identities = 100/359 (27%), Positives = 170/359 (46%), Gaps = 34/359 (9%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLP---ILIKLHGIPPLNSITKHDGPLAL 218
T +Q +TIP + + +D A+TGSGKTLAF++P IL + PP K + +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP-----KPHQVMGV 94
Query: 219 VLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR----DGCDILVATP 274
+++PTREL+ QI + Q N V +VGG E+ A+++ +GC++L+ TP
Sbjct: 95 IISPTRELSTQIYNVAQPFVSTLAN-VNSVLLVGGR---EVKADMKIIEEEGCNVLIGTP 150
Query: 275 GRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATF 333
GR + + L+LDEAD++++ GF+ Q+ I+++ R+T +F+AT
Sbjct: 151 GRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP--KQRRTGLFSATQ 208
Query: 334 SPTIEKVANGYLKKPSYVTVGGEESKPKIKQI----------VRYVPDEEEKLKILVKDF 383
+ +E++A L+ P V V + +Q+ + Y+ E +K + D
Sbjct: 209 TEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDL 268
Query: 384 L-PNYKAPIIIFINYKRTADW---LFDKLREAR-FRATTLHGSKSQEQREHSLSLLRNGK 438
L N +I+F + D+ + K+ + +HG Q R+ +L+
Sbjct: 269 LIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKAS 328
Query: 439 VDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
L+ TDVA RG+DIP + VV P+ + F HR FL +E+
Sbjct: 329 SGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEE 387
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 130 bits (328), Expect = 4e-30
Identities = 116/372 (31%), Positives = 161/372 (43%), Gaps = 59/372 (15%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGK--------------------TLAFLLP 195
L Y +PT IQ IP RD A TGSGK T AF LP
Sbjct: 185 LGYKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALP 242
Query: 196 ILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHS 255
L +L P T+ L+L PTRELA QI Q++ + C + IVGG S
Sbjct: 243 TLERLLFRPKRVFATR-----VLILTPTRELAVQIHSMIQNLAQFTDIKCGL--IVGGLS 295
Query: 256 LEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTI 314
+ E LR DI+VATPGR + L+LDEAD+++ GF ++T +
Sbjct: 296 VREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITEL 355
Query: 315 LAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEE 374
+ RQTM+F+AT + ++++ L KP ++ +P
Sbjct: 356 VRLCP--KRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPG------------ 401
Query: 375 KLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREH----- 429
L +++L + P K+ A L A +A LHG+ +Q QR
Sbjct: 402 ----LTEEYLREFFVPSCAS-GTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNLG 456
Query: 430 -----SLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXX 484
SL L R +VD LIATDVA RG+DI V V+N P+ DS+VHRV
Sbjct: 457 TSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGR 516
Query: 485 XXXXXXFLTEEE 496
F+T+ +
Sbjct: 517 EGYAVTFVTDSD 528
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 130 bits (328), Expect = 4e-30
Identities = 108/384 (28%), Positives = 176/384 (45%), Gaps = 17/384 (4%)
Query: 127 KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGS 186
KG V + + L PE L I+ D + P+ +Q IP + D + A +G
Sbjct: 32 KGTYVSIHSSGFRDFLLKPEILRAIV--DCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 89
Query: 187 GKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
GKT F+L L +L P ++ T H LV+ TRELA QI E + +K +
Sbjct: 90 GKTAVFVLATLQQLE---PSDNNTCH----VLVMCHTRELAFQISKEYERFSK-YMPTVK 141
Query: 247 IVSIVGGHSLEEISANLRDGCD-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID- 304
+ GG ++++ L+ G I+V TPGR K + VLDE DKM++
Sbjct: 142 VAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQ 201
Query: 305 FGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQ 364
+ I T +Q MMF+AT S I V +++ P V V +E+K +
Sbjct: 202 LDMRRDVQEIFRSTP--HGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVD-DEAKLTLHG 258
Query: 365 IVRYVPD--EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSK 422
+ ++ + E EK K L + ++IF+ + L L E F A +H
Sbjct: 259 LQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGM 318
Query: 423 SQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXX 482
+QE+R + ++ + IL+AT++ GRG+DI V++V N P+ D+++HRV
Sbjct: 319 TQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 378
Query: 483 XXXXXXXXFLTEEEDHSAMAKLFD 506
F+++E D + ++ D
Sbjct: 379 GTKGLAITFVSDENDAKILNEVQD 402
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 130 bits (327), Expect = 5e-30
Identities = 113/422 (26%), Positives = 183/422 (42%), Gaps = 26/422 (6%)
Query: 89 EDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDL 148
E+E ++D E++ EE+ + + D +KG + + L PE L
Sbjct: 2 EEEQLLDY-------EEEQEEIQDKQPEVGGGDAR-KTKGTYASIHSSGFRDFLLKPEIL 53
Query: 149 LNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNS 208
I D + P+ +Q IP I D + A +G GKT F++ L +L +
Sbjct: 54 RAI--GDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPV----- 106
Query: 209 ITKHDGPLALV-LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGC 267
DG +++V + TRELA QI E + +K + + GG ++++ L + C
Sbjct: 107 ----DGEVSVVCMCHTRELAFQISKEYERFSK-YLPGVKVAVFFGGMAIKKDEERLANDC 161
Query: 268 D-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMI-DFGFEDQLTTILAKTETISNRQ 325
I+V TPGR +V VLDE DKMI D + I+ T +Q
Sbjct: 162 PHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTP--QQKQ 219
Query: 326 TMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVP-DEEEKLKILVKDFL 384
MMF+AT + V +++ P V V E YV E EK + L+
Sbjct: 220 VMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLD 279
Query: 385 PNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
++IF+ + + L L E F + +H +QE+R ++ + IL+A
Sbjct: 280 ALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVA 339
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
TD+ GRG+DI V++V N P+ DS++HRV F+++E D + +
Sbjct: 340 TDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSV 399
Query: 505 FD 506
D
Sbjct: 400 QD 401
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 130 bits (327), Expect = 5e-30
Identities = 108/363 (29%), Positives = 158/363 (42%), Gaps = 17/363 (4%)
Query: 143 LIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHG 202
L+ +LL I D + P+ +Q IP I D I A +G GKT F+L L ++
Sbjct: 52 LLKPELLRAIV-DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP 110
Query: 203 IPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIV-GGHSLEEISA 261
P S ALVL TRELA QI +E + P VS+ GG +++
Sbjct: 111 SPGQVS--------ALVLCHTRELAYQICNEFVRFSTYL--PDTKVSVFYGGVNIKIHKD 160
Query: 262 NLRDGCD-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTILAKTE 319
L++ C I+V TPGR K V +LDE DKM++ + I T
Sbjct: 161 LLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
Query: 320 TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKIL 379
++Q MMF+AT S I V +++ P + V E + Y+ E +
Sbjct: 221 --HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRK 278
Query: 380 VKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGK 438
+ D L ++IF+ A L L E F + +H SQE+R + G
Sbjct: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 439 VDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDH 498
IL+ATD+ GRGIDI V++V+N P S D+++HRV F+ D
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 499 SAM 501
+
Sbjct: 399 EVL 401
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 130 bits (326), Expect = 7e-30
Identities = 95/331 (28%), Positives = 168/331 (50%), Gaps = 23/331 (6%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNS---ITKHDGPLAL 218
T +Q +T+ ++ +D + A TG+GK++AFLLP + + + +NS + K AL
Sbjct: 352 TRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV--LKAMNSGKGVNKVAPIFAL 409
Query: 219 VLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR-DGCDILVATPGRX 277
+L PTRELA QI EG+++ K + + +++GG + L + C IL+ATPGR
Sbjct: 410 ILCPTRELASQIAAEGKALLK-FHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRL 468
Query: 278 XXXXXXXXXXXKQVNTL---VLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFS 334
++ L ++DEAD ++D GF + I+ RQ+++F+AT
Sbjct: 469 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPR--QRQSLLFSATIP 526
Query: 335 PTIEKVANGYLKKP-SYVT---VGGEESKPKIKQIVRYVPDEEEKLKI--LVKDFL---P 385
+ +V+ LK+ SY+ +G E+ K++Q P E + L+K+ + P
Sbjct: 527 KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTP 586
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+YK II+F + ++ LRE + +H K Q R + IL+ +
Sbjct: 587 DYK--IIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTS 644
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DV+ RG++ P+V+LV+ + P + ++HR+
Sbjct: 645 DVSARGMNYPDVTLVIQVGIPSDREQYIHRL 675
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 129 bits (323), Expect = 1e-29
Identities = 108/359 (30%), Positives = 164/359 (45%), Gaps = 31/359 (8%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLA 221
T +Q STIP + N+D + + TGSGKT AF++P+L K+ S K +L++A
Sbjct: 31 TPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIA 90
Query: 222 PTRELAQQIQHEGQSITKLWKR---PCNIVSIVGGHSL---EEISANLRDGCDILVATPG 275
PTREL++QI+ S + + P +VG + +++S LR+ IL+ TPG
Sbjct: 91 PTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPG 150
Query: 276 RXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSP 335
R + +V+DEAD+++D F IL R+T +F+AT
Sbjct: 151 RVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLP--KQRRTGLFSATMRS 208
Query: 336 TIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIII-- 393
+ L+ P +TV + P ++ V + EKL++LV L NYK I
Sbjct: 209 AGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVS-ILNNYKFKKCIVY 267
Query: 394 ------------FINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVD- 440
FI Y + L +++ +LHG R +L+ + +
Sbjct: 268 FPTCVSVSYFYSFIQYLGKRNILVNEVE-----IFSLHGKLQTSARTKTLTAFTDSLSNS 322
Query: 441 ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE--EED 497
+L TDVA RGIDIP+V LV+ L P + D F+HR FL E EED
Sbjct: 323 VLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREED 381
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 129 bits (323), Expect = 1e-29
Identities = 107/391 (27%), Positives = 173/391 (43%), Gaps = 22/391 (5%)
Query: 127 KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGS 186
KG V + + L PE L I+ D + P+ +Q IP I D + A +G
Sbjct: 36 KGSYVSIHSSGFRDFLLKPELLRAIV--DCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 93
Query: 187 GKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
GKT F+L L +L + S+ LV+ TRELA QI E + +K
Sbjct: 94 GKTAVFVLATLQQLEPVTGQVSV--------LVMCHTRELAFQISKEYERFSKYMPN-VK 144
Query: 247 IVSIVGGHSLEEISANLRDGCD-ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID- 304
+ GG S+++ L+ C I+V TPGR K + +LDE DKM++
Sbjct: 145 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 204
Query: 305 FGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQ 364
+ I T +Q MMF+AT S I V +++ P + V +E+K +
Sbjct: 205 LDMRRDVQEIFRMTP--HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD-DETKLTLHG 261
Query: 365 IVRY---VPDEEEKLKILVKDFLPNYKA-PIIIFINYKRTADWLFDKLREARFRATTLHG 420
+ +Y + D E+ K+ D L + ++IF+ + L L E F A +H
Sbjct: 262 LQQYYVKLKDNEKNRKLF--DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 319
Query: 421 SKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXX 480
QE+R ++ + IL+AT++ GRG+DI V++ N P+ D+++HRV
Sbjct: 320 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 379
Query: 481 XXXXXXXXXXFLTEEEDHSAMAKLFDYVKKN 511
F+++E D + + D + N
Sbjct: 380 RFGTKGLAITFVSDENDAKILNDVQDRFEVN 410
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 129 bits (323), Expect = 1e-29
Identities = 118/432 (27%), Positives = 183/432 (42%), Gaps = 93/432 (21%)
Query: 146 EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPP 205
EDLL+I E TS+Q+ TIP V+ +D + + TGSGKTLA+ LP++ L P
Sbjct: 343 EDLLSI-------RELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQP 395
Query: 206 LNSITKHDGPLALVLAPTRELAQQIQHEGQSITK--LWKRPCNIVSIVGGHSLEEISANL 263
I + DG LALV+ PTREL Q Q + K W P S++GG S + A L
Sbjct: 396 --RIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPG---SLLGGESRKSEKARL 450
Query: 264 RDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDFGFEDQLTTIL------- 315
R G +IL+ TPGR ++ L+LDEAD++++ G+E + ++
Sbjct: 451 RKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQR 510
Query: 316 --AKTETISNRQTMMFTATFSPTIE------------------------KVANGYLKKPS 349
+ + + Q M+ +AT + ++ K +GY K+
Sbjct: 511 AECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETI 570
Query: 350 YVTVGGEESKPKIKQIVRYVPDEEEKLKI-----------------LVKDFLPNYKA-PI 391
+ ++ + ++ V V E L++ L K+ + K
Sbjct: 571 EALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKA 630
Query: 392 IIFINYKRTADWLFDKLREARFRATT---------------------------LHGSKSQ 424
I+F++ ++ D L EA R LHGS +Q
Sbjct: 631 IVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQ 690
Query: 425 EQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXX 484
+R+ R+ +L+ATDV GRGID+P++ LVV P++ FVHRV
Sbjct: 691 TERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGR 750
Query: 485 XXXXXXFLTEEE 496
FLT E
Sbjct: 751 KGRAVLFLTPSE 762
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 128 bits (322), Expect = 2e-29
Identities = 119/483 (24%), Positives = 214/483 (43%), Gaps = 45/483 (9%)
Query: 46 IKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEK 105
I K N N E++ +++ +N D L ++ D ++ +I ++ K SE
Sbjct: 25 ISDKVNQLNTSENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQ-SEN 83
Query: 106 KYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQ 165
+ + + ++ + + ++++ EL+L PE L I + + + +P+ IQ
Sbjct: 84 DESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYS--MKFQKPSKIQ 141
Query: 166 RSTIPNVINN--RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPT 223
+P +++N R+ IG + +G+GKT AF L +L ++ P P A+ LAP+
Sbjct: 142 EKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK--------PQAICLAPS 193
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDG--------CDILVATPG 275
RELA+QI ++V+ +G ++ + + ++D I++ TPG
Sbjct: 194 RELARQIM--------------DVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPG 239
Query: 276 RXXXXXXXXXXXXKQVNTLVLDEADKMIDF-GFEDQLTTILAKTETISNRQTMMFTATFS 334
+ + VLDEAD M+D G DQ I K N Q ++F+ATFS
Sbjct: 240 TVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI--KHLLPRNTQIVLFSATFS 297
Query: 335 PTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIII 393
+EK A + + + + EE S IKQ+ EE K +LV+ + II
Sbjct: 298 ERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSII 357
Query: 394 FINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGID 453
F K TA+ + ++ L G+ QR+ + R G +L+ T+V RGID
Sbjct: 358 FCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 417
Query: 454 IPNVSLVVNLQFP------KSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKLFDY 507
+ V+LVVN P +++HR+ F+ +++ M + +Y
Sbjct: 418 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 477
Query: 508 VKK 510
++
Sbjct: 478 FQR 480
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 128 bits (322), Expect = 2e-29
Identities = 90/319 (28%), Positives = 150/319 (46%), Gaps = 19/319 (5%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ P+ IQ +IP + RD + A G+GKT AF +P+L K I N++ + + L
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK---IDQDNNVIQGNCVLD 207
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
+EL + ++ + ++ GG SL++ L +LV TPGR
Sbjct: 208 HTSQVCKELGKHLKIQ-------------VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI 254
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
K + LV+DEADK++ F+ + +++ +RQ +MF+ATF T+
Sbjct: 255 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP--ESRQILMFSATFPVTV 312
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+ + +L P + + E + I Q +V +E +K+ L F IIF N
Sbjct: 313 KDFKDRFLTNPYVINLMDELTLKGITQFYAFV-EERQKIHCLNTLFSKLQINQSIIFCNS 371
Query: 398 KRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNV 457
+ L K+ E + +H Q+ R RNG L+ TD+ RGIDI V
Sbjct: 372 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 431
Query: 458 SLVVNLQFPKSFDSFVHRV 476
++V+N FPK+ ++++HRV
Sbjct: 432 NVVINFDFPKNAETYLHRV 450
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 128 bits (321), Expect = 2e-29
Identities = 117/380 (30%), Positives = 174/380 (45%), Gaps = 25/380 (6%)
Query: 136 RNWHELKLIP-EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL 194
+ W L P D + + + + T +Q + IP ++ +D A TGSGKTLAFL+
Sbjct: 4 KKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLV 63
Query: 195 P---ILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHE-GQSITKLWKRPCNIVSI 250
P IL + H P K G ALV++PTRELA+QI Q + N I
Sbjct: 64 PMLEILQRRHKETPWGP--KEIG--ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLI 119
Query: 251 VGGHSLEEISANLRDGCD-ILVATPGRXXXXXXXX------XXXXKQVNTLVLDEADKMI 303
VGG+S+EE A LR ILV TPGR K + LVLDEAD+++
Sbjct: 120 VGGNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLL 179
Query: 304 DFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIK 363
D GF+ + IL R+T +F+AT + + + L+ P V+V + S
Sbjct: 180 DLGFKTSVNNILGYLPR--QRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPA 237
Query: 364 QIVRYVPDEEEKLK-ILVKDFLPNYKAPI---IIFINYKRTADWLFDKLREARFRATTL- 418
++ + E +LK + + +FL + I ++F ++ + L + T L
Sbjct: 238 RLQNFYRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLG 297
Query: 419 -HGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVX 477
HG K + +R + + RN +L+ TDV RG+D+P + VV P + SFVHRV
Sbjct: 298 IHG-KMKNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVG 356
Query: 478 XXXXXXXXXXXXXFLTEEED 497
FL ED
Sbjct: 357 RTARQGNEGNALVFLLPSED 376
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 127 bits (320), Expect = 3e-29
Identities = 105/328 (32%), Positives = 156/328 (47%), Gaps = 32/328 (9%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLA 221
T IQ+ IP ++ +D IG A TGSGKT AF LPIL +L P + ALVL
Sbjct: 31 TPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSH--------FALVLT 82
Query: 222 PTRELAQQIQHE----GQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
PT ELA QI + GQ++ + + GG S L I+VA PGR
Sbjct: 83 PTHELAYQISEQFLVAGQAMG------VRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136
Query: 278 XXXXXX-XXXXXKQVNTLVLDEADKMIDFGFEDQLTTI---LAKTETISNRQTMMFTATF 333
+ LV+DEAD+M++ F++ L+ I L KT RQ + F+AT
Sbjct: 137 ADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKT-----RQNLFFSATM 191
Query: 334 SPTIEK-----VANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYK 388
I++ +A+ + V E+ + + + ++ L K N
Sbjct: 192 KDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREENEN 251
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
A ++IF N K+ L L+ LHG Q++R +LS ++ ++ LIATDVA
Sbjct: 252 ANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVA 311
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
RG+DIP+V LV+N P++ ++HRV
Sbjct: 312 ARGLDIPSVELVMNHMLPRTPKEYIHRV 339
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 127 bits (318), Expect = 6e-29
Identities = 105/382 (27%), Positives = 163/382 (42%), Gaps = 50/382 (13%)
Query: 160 EPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALV 219
+PT IQ+S IP ++ +D + A TGSGKTLA+LLP+L KL ++ K P A +
Sbjct: 68 KPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSK--KKLAPSAFI 125
Query: 220 LAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPG---- 275
L P+REL QQ+ E S+ +L + V + S ++ L +ILV+TP
Sbjct: 126 LVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPK 185
Query: 276 RXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR-QTMMFTATFS 334
+ ++ LVLDEAD ++ +G+ED L ++ T I R Q ++ +AT S
Sbjct: 186 CFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV---TSIIPRRCQCLLMSATTS 242
Query: 335 PTIEKVANGYLKKPSYVTVGGEESKPK-----IKQIVRYVPDEEEKLKILVKDFLPNYKA 389
+EK+ L P +T+ + K + ++Q +++ L IL L +
Sbjct: 243 SDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQK 302
Query: 390 PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAG 449
I+IFIN L L + ++ L+G Q R H L G D LIATD
Sbjct: 303 KILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNS 362
Query: 450 -----------------------------------RGIDIPNVSLVVNLQFPKSFDSFVH 474
RGID V V+N P+S ++H
Sbjct: 363 QTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIH 422
Query: 475 RVXXXXXXXXXXXXXXFLTEEE 496
R+ ++ +E
Sbjct: 423 RIGRTGRAYSSGSSVSLISPDE 444
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 126 bits (316), Expect = 9e-29
Identities = 95/331 (28%), Positives = 166/331 (49%), Gaps = 23/331 (6%)
Query: 162 TSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNS---ITKHDGPLAL 218
T +Q +T+ ++ +D + A TG+GK++AFLLP + + + +NS + K L
Sbjct: 399 TRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV--LKAMNSGKGVHKVAPIFVL 456
Query: 219 VLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR-DGCDILVATPGRX 277
+L PTRELA QI EG+++ K + +++GG L + C IL+ATPGR
Sbjct: 457 ILCPTRELASQIAAEGKALLKNHDG-IGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 278 XXXXXXXXXXXKQVNTL---VLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFS 334
++ L ++DEAD ++D GF+ + I+ RQ+++F+AT
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPR--QRQSLLFSATIP 573
Query: 335 PTIEKVANGYLKKP-SYVT---VGGEESKPKIKQIVRYVPDEEEKLKI--LVKDFL---P 385
+ +V+ LK+ SY+ +G E+ K+KQ P E + L+K+ + P
Sbjct: 574 KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMP 633
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+YK II+F + ++ LRE + +H K Q R + IL+ +
Sbjct: 634 DYK--IIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTS 691
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DV+ RG++ P+V+LV+ + P + ++HR+
Sbjct: 692 DVSARGMNYPDVTLVIQVGIPSDREQYIHRL 722
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 125 bits (314), Expect = 2e-28
Identities = 109/364 (29%), Positives = 166/364 (44%), Gaps = 17/364 (4%)
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPT 223
+Q+ IP + D IG + TG+GKTLAFL+P L +L + DG LV+ PT
Sbjct: 30 VQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSL----GWGGGDGLGCLVITPT 85
Query: 224 RELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXX 283
RELA QI I K + I+GG E+ + +ILV TPGR
Sbjct: 86 RELALQIFDVLSRIAKYTVLSTGL--IMGGLEAEDELLKVNQ-MNILVCTPGRLLQHLQE 142
Query: 284 X-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVAN 342
V L+LDEADKMI+ GF++ L IL +QT++F+AT + ++
Sbjct: 143 NPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIP--QKKQTLLFSATPKASTARILK 200
Query: 343 GYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTAD 402
L+ P +++ EE P + Y+ +K+ L N + I+F + +
Sbjct: 201 --LEDPRIISIYKEEGFPSQLRQYFYMMRTGDKINYLHTFIGSNPEVKGIVFFSTCKEVK 258
Query: 403 W---LFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSL 459
+ LF++L+ R R L G SQ+QR K IL TD+ RG+D P V +
Sbjct: 259 FHCLLFERLK-LRNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDV 317
Query: 460 VVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE-EEDHSAMAKLFDYVKKNDFTGENY 518
V+ P + +++VHRV +L EE + ++KK + +
Sbjct: 318 VIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLLTDIQKKGWIKKQEGMEDKG 377
Query: 519 ISKE 522
IS+E
Sbjct: 378 ISEE 381
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 124 bits (312), Expect = 3e-28
Identities = 86/319 (26%), Positives = 149/319 (45%), Gaps = 13/319 (4%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ P+ IQ + IP ++ +D + A G+GKT A+ +P+L + I P + A
Sbjct: 77 WERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ---IDPTKDYIQ-----A 128
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
LV+ PTRELA Q + K ++ GG L++ + +++ATPGR
Sbjct: 129 LVMVPTRELALQTSQICIELAK--HLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRI 186
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
LVLDEADK++ F+ L ++ K + Q ++F+ATF T+
Sbjct: 187 LDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLP--KDPQILLFSATFPLTV 244
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+ +L++P + + E + + Q +V E +K+ L F IIF N
Sbjct: 245 KNFMEKHLREPYEINLMEELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSIIFCNS 303
Query: 398 KRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNV 457
+ + L K+ E + +H +Q R R G L+ +D+ RGID+ V
Sbjct: 304 TQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAV 363
Query: 458 SLVVNLQFPKSFDSFVHRV 476
++V+N FP+ ++++HR+
Sbjct: 364 NVVINFDFPRMAETYLHRI 382
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 121 bits (304), Expect = 2e-27
Identities = 113/414 (27%), Positives = 190/414 (45%), Gaps = 43/414 (10%)
Query: 114 DWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVI 173
D S+ ++ + + E L + E ++ +++ IT + + T +Q+ TI ++
Sbjct: 83 DKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITR-MEFPGLTPVQQKTIKPIL 141
Query: 174 NNRDF--IGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPL---ALVLAPTRELAQ 228
++ D I A TG+GKT AFL+PI L TK D A+++APTR+LA
Sbjct: 142 SSEDHDVIARAKTGTGKTFAFLIPIFQHLIN-------TKFDSQYMVKAVIVAPTRDLAL 194
Query: 229 QIQHEGQSITK----LWKRPCNIVSIVGGHSLEEISANLRD-GCDILVATPGRXXXXXXX 283
QI+ E + I L K C VS+VGG + +I++ATPGR
Sbjct: 195 QIEAEVKKIHDMNYGLKKYAC--VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK 252
Query: 284 XXXXX-KQVNTLVLDEADKMIDFGFEDQLTTILA-----KTETISNRQTMMFTATFSPTI 337
+ V+ VLDEAD++++ GF D L TI +++ N +T++F+AT +
Sbjct: 253 YSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKV 312
Query: 338 EKVANGYLKKPSYV---TVGGEESKPKIKQIVRYVPDEE---------EKLKILVKDFLP 385
+K+AN + K + TV E + + V E+ E +K +K+
Sbjct: 313 QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 372
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTL---HGSKSQEQREHSLSLLRNGKVDIL 442
NYKA IIF + +L L+ + + HG +Q +R + + + IL
Sbjct: 373 NYKA--IIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 430
Query: 443 IATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+ TDV RG+D PNV V+ + P +++HR+ F+ ++E
Sbjct: 431 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 484
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 121 bits (304), Expect = 2e-27
Identities = 100/352 (28%), Positives = 162/352 (45%), Gaps = 21/352 (5%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGV-ASTGSGKTLAFLLPILIK--LHGIPPLNSITKHDG 214
+ + T +Q+ + V N + V A TG+GKTLAFLL + K L G P LNS H
Sbjct: 58 FEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL-VAFKDVLKGKPRLNSSKIH-- 114
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHS-LEEISANLRDGCDILVAT 273
+++L+PTRELA QI E + +T + + +GG+S + E +A R ++L+AT
Sbjct: 115 --SVILSPTRELALQIFEEARKLT--YGTGIRVSYAIGGNSKMREENAIRRGNANLLIAT 170
Query: 274 PGRXXXXXXXXXXXXK-QVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTAT 332
PGR ++ +LDEAD+++D GF + + I T R+ + F+AT
Sbjct: 171 PGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRK-LCFSAT 229
Query: 333 FSPTIEKVANGYLKKP-SYVTVGGEESKPKIKQIVRYVPDEE------EKLKILVKDFLP 385
P + V G L + P +++ ++V + + L +L +
Sbjct: 230 MPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSS 289
Query: 386 NYKAPIIIFINYKRTADWLFDKLRE-ARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
N + II+F+ D++ L + LH + QR R + IL A
Sbjct: 290 NPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFA 349
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
TDV RG+D PN++ VV + P + D ++HR+ L E+E
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQE 401
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 120 bits (302), Expect = 4e-27
Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 24/341 (7%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAF 192
+ ++ EL+L PE L + T +++ PT IQ + +P ++ + I A +G+GKT AF
Sbjct: 208 ISSFRELRLKPEVLKALDT--MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAF 265
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI---VS 249
+L +L ++ +N + P + LAPT ELA+QI G+ + K+ K N+ +
Sbjct: 266 VLTMLCRID----VNLMC----PQCICLAPTLELAKQI---GEVVEKMGKFIDNLKIHYA 314
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDF-GF 307
I GG+ L + I++ TPG ++ LVLDEAD MI GF
Sbjct: 315 IKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGF 372
Query: 308 EDQLTTILAKTETISNR-QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQI 365
D TTI E S+ Q+M+F+AT+ + A +K V + EE P IKQ
Sbjct: 373 TDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQF 432
Query: 366 VRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQE 425
+ K +V + A +IF + K + WL++ +R + LHG +
Sbjct: 433 YVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVV 492
Query: 426 QREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFP 466
+R ++ + G +LI T+V RGID+ VS+V+N P
Sbjct: 493 ERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 533
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 120 bits (302), Expect = 4e-27
Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 24/341 (7%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAF 192
+ ++ EL+L PE L + T +++ PT IQ + +P ++ + I A +G+GKT AF
Sbjct: 233 ISSFRELRLKPEVLKALDT--MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAF 290
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI---VS 249
+L +L ++ +N + P + LAPT ELA+QI G+ + K+ K N+ +
Sbjct: 291 VLTMLCRID----VNLMC----PQCICLAPTLELAKQI---GEVVEKMGKFIDNLKIHYA 339
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDF-GF 307
I GG+ L + I++ TPG ++ LVLDEAD MI GF
Sbjct: 340 IKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGF 397
Query: 308 EDQLTTILAKTETISNR-QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQI 365
D TTI E S+ Q+M+F+AT+ + A +K V + EE P IKQ
Sbjct: 398 TDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQF 457
Query: 366 VRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQE 425
+ K +V + A +IF + K + WL++ +R + LHG +
Sbjct: 458 YVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVV 517
Query: 426 QREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFP 466
+R ++ + G +LI T+V RGID+ VS+V+N P
Sbjct: 518 ERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 558
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 120 bits (302), Expect = 4e-27
Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 24/341 (7%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAF 192
+ ++ EL+L PE L + T +++ PT IQ + +P ++ + I A +G+GKT AF
Sbjct: 617 ISSFRELRLKPEVLKALDT--MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAF 674
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNI---VS 249
+L +L ++ +N + P + LAPT ELA+QI G+ + K+ K N+ +
Sbjct: 675 VLTMLCRID----VNLMC----PQCICLAPTLELAKQI---GEVVEKMGKFIDNLKIHYA 723
Query: 250 IVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDF-GF 307
I GG+ L + I++ TPG ++ LVLDEAD MI GF
Sbjct: 724 IKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGF 781
Query: 308 EDQLTTILAKTETISNR-QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQI 365
D TTI E S+ Q+M+F+AT+ + A +K V + EE P IKQ
Sbjct: 782 TDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQF 841
Query: 366 VRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQE 425
+ K +V + A +IF + K + WL++ +R + LHG +
Sbjct: 842 YVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVV 901
Query: 426 QREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFP 466
+R ++ + G +LI T+V RGID+ VS+V+N P
Sbjct: 902 ERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 942
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 120 bits (302), Expect = 4e-27
Identities = 106/409 (25%), Positives = 179/409 (42%), Gaps = 27/409 (6%)
Query: 120 EDFNISS--KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVIN--N 175
ED NI + G T + +L L PE L+ + ++ + +P+ IQ ++P ++ +
Sbjct: 73 EDSNIKAVTSGDTPYTSASRFEDLNLSPE-LMKGLYVEMKFEKPSKIQAISLPMIMTPPH 131
Query: 176 RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQ 235
+ I A GSGKT F+L +L ++ P L P AL + PTRELA Q Q
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE------PQALCICPTRELANQNMEVLQ 183
Query: 236 SITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLV 295
+ K + + +++ TPG + LV
Sbjct: 184 KMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILV 243
Query: 296 LDEADKMIDF-GFEDQLTTILAKTETIS-NRQTMMFTATFSPTIEKVANGYLKKPSYVTV 353
DEAD M+ GF D I+ ++ N Q ++F+ATF+ T++ +K P+ + V
Sbjct: 244 FDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFV 303
Query: 354 GGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYK--APIIIFINYKRTADWLFDKLRE 410
E+ + +KQ P E+ K+++ +KD + IIF+ K +A + L E
Sbjct: 304 KREDLALDSVKQYKVVCPKEQNKIEV-IKDQIMELGDIGQTIIFVKTKASAQKVHKALAE 362
Query: 411 ARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFD 470
+ T++HG+ ++ R+ + + +LIATDV RG D V+LVVN P ++
Sbjct: 363 MGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
Query: 471 S-------FVHRVXXXXXXXXXXXXXXFLTEEE-DHSAMAKLFDYVKKN 511
+ ++HRV L ++ D M K+ Y + N
Sbjct: 423 TGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYFEAN 471
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 119 bits (299), Expect = 9e-27
Identities = 117/455 (25%), Positives = 204/455 (44%), Gaps = 50/455 (10%)
Query: 33 EEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDES 92
E+E A+++LS+ +K EE++ + + + +A+ + + ED +
Sbjct: 12 EQEAAAESLSNLHLK--------------EEKIKPDTNGAVVKTNANAEKTDEEEKEDRA 57
Query: 93 IVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNII 152
+ L K + +T +L D N ++++ EL+L P+ L +
Sbjct: 58 -AQSLLNKLIRSNLVD--NTNQVEVLQRDPNSPLYS------VKSFEELRLKPQLLQGVY 108
Query: 153 TNDLHYNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSIT 210
+ +N P+ IQ + +P ++ ++ I + +G+GKT AF+L +L + + P N
Sbjct: 109 A--MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ---VEPANKY- 162
Query: 211 KHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDIL 270
P L L+PT ELA Q + + K + + V G+ LE + I+
Sbjct: 163 ----PQCLCLSPTYELALQTGKVIEQMGKFYPE-LKLAYAVRGNKLER---GQKISEQIV 214
Query: 271 VATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDF-GFEDQLTTILAKTETISNRQTMM 328
+ TPG K++ VLDEAD MI G +DQ +I + N Q ++
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ--SIRIQRMLPRNCQMLL 272
Query: 329 FTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQIVRYVPDEEEKLKILVKDFLPNY 387
F+ATF ++ K A + P+ + + EE IKQ +EK + L +
Sbjct: 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 332
Query: 388 KAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
A +IF + ++TA WL +L + + L G EQR + R GK +L+ T+V
Sbjct: 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 392
Query: 448 AGRGIDIPNVSLVVNLQFPKSFD------SFVHRV 476
RGID+ VS+V+N P D +++HR+
Sbjct: 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 118 bits (296), Expect = 2e-26
Identities = 116/426 (27%), Positives = 183/426 (42%), Gaps = 36/426 (8%)
Query: 70 DDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGG 129
+ L+ R DL + Q + + + K W K S D+ IL N S +G
Sbjct: 44 EPLISCRRSQFDLTQYEQTDAKFGSLSLASKGWLHNK----SKGDFFIL----NASVRGE 95
Query: 130 TVEKPLRNWHEL-----KLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAST 184
+++ ++ E I LL + +L T IQ+ +P V N + A T
Sbjct: 96 ELQQEMQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCLIAAET 155
Query: 185 GSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRP 244
G GKT+ +LLPI+ KL + K + P L+L P RELA QI + +T+
Sbjct: 156 GCGKTITYLLPIVDKLLQKEVVTE-RKLNTPRVLILTPGRELATQIAGVTEKLTQ--GTN 212
Query: 245 CNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID 304
+ S++GG++ + + + DILVAT G +QV LVLDEAD ++D
Sbjct: 213 LKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRMEQVRHLVLDEADTLLD 272
Query: 305 FGFEDQLTTILAK------TETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEES 358
F D+L+ L + + + Q ++ +AT ++ L K V E
Sbjct: 273 DTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREI----LHKVIDVDTIREVV 328
Query: 359 KPKIKQIVRYVP---------DEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLR 409
P + +++ +V D L LVK L + P+I+F N T+D++ L
Sbjct: 329 SPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAK-RRPLIVFSNKSTTSDFVSIFLN 387
Query: 410 EARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSF 469
+ L+G + R +NG D+L TDV RG+D VVN FP
Sbjct: 388 NSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHV 447
Query: 470 DSFVHR 475
++HR
Sbjct: 448 SDYIHR 453
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 118 bits (295), Expect = 3e-26
Identities = 84/292 (28%), Positives = 136/292 (45%), Gaps = 4/292 (1%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +PTS+Q TIP + +D + A TGSGKT A+L+PIL L ++ + G A
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQR--GIFA 91
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRX 277
L+L PTRELAQQ+ + + +T + +++ S L D DI++ATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 278 XXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTI 337
++ LV+DEAD M+ FG+ + + T+ Q+ + +AT S I
Sbjct: 152 VVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL--SRSLPRGTQSFLMSATLSKNI 209
Query: 338 EKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINY 397
+ + P + V +E+ K+ Q V ++++ L + L K I+IF+N
Sbjct: 210 ASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNE 269
Query: 398 KRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAG 449
L L + ++ L+ R H L G I+IATD +G
Sbjct: 270 INRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESG 321
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 118 bits (295), Expect = 3e-26
Identities = 83/240 (34%), Positives = 128/240 (52%), Gaps = 13/240 (5%)
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+HEL L P L++ I L + TS+Q+ +IP ++ RD + + TGSGKTLA+ +P++
Sbjct: 232 FHELGLHPH-LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 290
Query: 198 IKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVS--IVGGHS 255
L + + I + DGP ALVL PTRELA Q ++ KL K IV ++GG
Sbjct: 291 QSLQAME--SKIQRSDGPYALVLVPTRELALQ---SFDTVQKLLKPFTWIVPGVLMGGEK 345
Query: 256 LEEISANLRDGCDILVATPGR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
+ A LR G +IL++TPGR ++ LV DEAD+++D GFE +T I
Sbjct: 346 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 405
Query: 315 L-AKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTV---GGEESKPKIKQIVRYVP 370
L A RQ ++ +AT + + ++A+ L P ++V ++ PK K + P
Sbjct: 406 LNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCP 465
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 117 bits (294), Expect = 3e-26
Identities = 98/364 (26%), Positives = 168/364 (45%), Gaps = 38/364 (10%)
Query: 144 IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGI 203
+ ++LL I N + +P+ IQ+S IP+++ + + + +G+GKT+A+ +L G
Sbjct: 58 LSDELLKAIYNQ-GFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVL----GN 112
Query: 204 PPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISA-- 261
+ T+ +V+ PTREL+ Q+ I + G ++ SA
Sbjct: 113 TKIGERTQ-----VMVVTPTRELSTQVTEV-------------ISGLAGPLGIKVFSALK 154
Query: 262 -NLRD--GCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKT 318
+ D G +++V +PG K V +VLDEAD ++D T + K
Sbjct: 155 NKITDSIGEEVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKL 214
Query: 319 ETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKI 378
IS Q + F+ATFS +++ Y P V + E + + + Y+ E E +
Sbjct: 215 --ISGAQMIFFSATFSEQVKQTIEFYA--PDAVKMYEERNGKPDEIKLFYIEAEGENKRR 270
Query: 379 LVKDFLPNYK-APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNG 437
+K + +IIF++ K T ++L KL + + LHG E+RE ++ R+
Sbjct: 271 ALKSLYEYLSISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSS 330
Query: 438 KVDILIATDVAGRGIDIPNVSLVVNLQFP-----KSFDSFVHRVXXXXXXXXXXXXXXFL 492
K IL+ TDV RG+DIP V+L+VN P S +++HR+ F+
Sbjct: 331 KSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFV 390
Query: 493 TEEE 496
+EE
Sbjct: 391 RDEE 394
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 117 bits (292), Expect = 6e-26
Identities = 99/353 (28%), Positives = 167/353 (47%), Gaps = 27/353 (7%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAF 192
++++ EL+L P+ L + + +N P+ IQ + +P ++ ++ I + +G+GKT AF
Sbjct: 90 VKSFEELRLKPQLLQGVYA--MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAF 147
Query: 193 LLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVG 252
+L +L + + P + P L L+PT ELA Q + + K + + V
Sbjct: 148 VLAMLSR---VEPSDRY-----PQCLCLSPTYELALQTGKVIEQMGKFYPE-LKLAYAVR 198
Query: 253 GHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXX-KQVNTLVLDEADKMIDF-GFEDQ 310
G+ LE + I++ TPG K++ VLDEAD MI G +DQ
Sbjct: 199 GNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 255
Query: 311 LTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQIVRYV 369
+I + N Q ++F+ATF ++ K A + P+ + + EE IKQ
Sbjct: 256 --SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC 313
Query: 370 PDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREH 429
+EK + L + A +IF + ++TA WL +L + + L G EQR
Sbjct: 314 SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 373
Query: 430 SLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFD------SFVHRV 476
+ R GK +L+ T+V RGID+ VS+V+N P D +++HR+
Sbjct: 374 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 426
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 117 bits (292), Expect = 6e-26
Identities = 97/322 (30%), Positives = 161/322 (49%), Gaps = 22/322 (6%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ T IQ + + + G+A TG+GKTLAFLLPIL + I P T+
Sbjct: 15 FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSR---IDPKVKQTQ-----V 66
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKR--PCNIVSIVGGHSLEEISANLR-DGCDILVATP 274
L+LAP++ELA Q ++ + W ++ S++GG + + L+ D I+V T
Sbjct: 67 LILAPSQELAMQTT----AVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTL 122
Query: 275 GRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFS 334
GR + T++ DEAD M+ D L + A+ T + Q +F+AT
Sbjct: 123 GRVLTMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPT--DVQLGLFSATSG 180
Query: 335 PTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIF 394
++ VA+ + ++ V+VG ++ I +YV D++ K +L++ L K ++F
Sbjct: 181 VDLKYVADTFGQEVRPVSVG-TDAPAAITHEFQYV-DQKAKASLLIQ--LARNKQQALVF 236
Query: 395 INYKRTADWLFDKLREARFRATTLHGS-KSQEQREHSLSLLRNGKVDILIATDVAGRGID 453
N + LR A ++ + K Q QR +L L + G+V +L+ TDVA RG+D
Sbjct: 237 FNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLD 296
Query: 454 IPNVSLVVNLQFPKSFDSFVHR 475
I ++ LVVN Q P+ +++HR
Sbjct: 297 IEDLPLVVNAQLPQRKKTYIHR 318
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 117 bits (292), Expect = 6e-26
Identities = 101/354 (28%), Positives = 171/354 (47%), Gaps = 23/354 (6%)
Query: 104 EKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTS 163
+K +E+ D +I + ++S G + ++ K++P+DL + + + N PT
Sbjct: 666 DKMFEDAVNNDDKIDFDQKVVASTGKVEIPDMASFDGFKVLPQDLHDNLKR-MKMNRPTP 724
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKL-HGIPPLNSIT-KHDGPLALVLA 221
IQR++ +++ D + A TGSGKTLAFL+P +IKL +T + P L++A
Sbjct: 725 IQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA 784
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR--DGCDILVATPGRXXX 279
PTREL Q + +T C + GG+S +LR +ILVAT GR
Sbjct: 785 PTRELVNQTFTTARQLTYETGLKCGLA--FGGYSRNANVQHLRSFSQLNILVATMGRLQD 842
Query: 280 XXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTILAKTETISNRQTMMFTATFSPTIE 338
++ +VLDEAD+M+D F ++++ I+ +QT++F+A+FS ++
Sbjct: 843 FVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGE-RTQQTVLFSASFSEDLQ 901
Query: 339 KVANGYLKKPSYVTVGGEE---SKPKIKQIVRYVPDEEEK---LKILVKD-----FLPN- 386
K Y + ++ + KI Q + VP E++ K+L D LP+
Sbjct: 902 SDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDA 961
Query: 387 --YKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGK 438
K +IF+N + D L + A ++H ++QEQR+ +L R GK
Sbjct: 962 PIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGK 1015
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 117 bits (292), Expect = 6e-26
Identities = 93/393 (23%), Positives = 160/393 (40%), Gaps = 79/393 (20%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ PT +Q IP +++ RD + A TG+GKT+A+L P++ L G P + + G A
Sbjct: 50 FEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSP--KVDRSHGTFA 107
Query: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVS--IVGGHSLEEISANLRDGCDILVATPG 275
LV+ PTREL Q+ +++ KL R IV ++GG + A LR G IL+ATPG
Sbjct: 108 LVIVPTRELCLQVY---ETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPG 164
Query: 276 R-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN----------- 323
R K + ++ DEAD +++ G+ ++ I+ + N
Sbjct: 165 RLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPK 224
Query: 324 ---RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEK----- 375
+Q ++ +AT + + +A L P + + + + + PD + +
Sbjct: 225 GIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIH 284
Query: 376 ----------------------------------LKILVKDFLPNYKAPIIIFINYKRTA 401
L +L F +++F + +
Sbjct: 285 VNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAV 344
Query: 402 DWLFDKLREARF------------------RATTLHGSKSQEQREHSLSLLRNGKVDILI 443
D+ + L E ++ + LHGS QE R + + K +L+
Sbjct: 345 DFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLL 404
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+TDVA RG+D P V ++ P +VHRV
Sbjct: 405 STDVAARGLDFPKVRCIIQYDCPGEATEYVHRV 437
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 115 bits (289), Expect = 1e-25
Identities = 94/357 (26%), Positives = 163/357 (45%), Gaps = 23/357 (6%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ P+ +Q IP D I A +G+GKT F L L + ++
Sbjct: 82 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL--------VLENLSTQI 133
Query: 218 LVLAPTRELAQQIQHEGQSI-TKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGR 276
L+LAPTRE+A QI +I K+ C++ +GG L + L+ C I V +PGR
Sbjct: 134 LILAPTREIAVQIHSVITAIGIKMEGLECHV--FIGGTPLSQDKTRLKK-CHIAVGSPGR 190
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMIDFG-FEDQLTTILAKTETISNRQTMMFTATFSP 335
+ +LDEADK+++ G F++Q+ I + +++Q + +AT+
Sbjct: 191 IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP--ASKQMLAVSATYPE 248
Query: 336 TIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDE-------EEKLKILVKDFLPNY 387
+ Y++ P++V + + S +KQ + V EEK + L + F
Sbjct: 249 FLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIP 308
Query: 388 KAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
++F N A L D L F A + G+ +Q QR +++ L++ +LI+TD+
Sbjct: 309 FNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDL 368
Query: 448 AGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEEDHSAMAKL 504
RGID V+LVVNL P +++++HR+ + E+ + M ++
Sbjct: 369 TSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRI 425
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 115 bits (289), Expect = 1e-25
Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 49/387 (12%)
Query: 136 RNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLP 195
+++ EL L P+ LL+ + + ++ PT +Q + +P +I D + + TGSGKTLA+LLP
Sbjct: 110 KSFEELGL-PDSLLDSLERE-GFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLP 167
Query: 196 ILIKLHGIPPLNSIT-----KHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI 250
IL ++ + + + K A+++AP+REL QI E + + R +
Sbjct: 168 ILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLV 227
Query: 251 VGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQ 310
G + + + A ++ I+V TPGR LVLDE D+++ F F +
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287
Query: 311 LTTIL------------AKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYV------- 351
+ IL + + +NRQT++ +AT ++ + A + +P V
Sbjct: 288 IHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTP 347
Query: 352 -------------TVGGEESKPKIKQIVRYVP----------DEEEKLKILVKDFLPNYK 388
T E+ +I+ ++ +P + K+ L +
Sbjct: 348 LDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDA 407
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
+I F+N+ R + KL + +HG + R L +NG++ +L+ +++
Sbjct: 408 QSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHR 475
RG+D+ LVVNL+ P + HR
Sbjct: 468 ARGLDVAECDLVVNLELPTDAVHYAHR 494
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 115 bits (287), Expect = 2e-25
Identities = 138/563 (24%), Positives = 228/563 (39%), Gaps = 109/563 (19%)
Query: 16 PAKKPRFLIKKRTFPQPEEEEASKALSHT-------VIKRKDNYRNLDEDELYEEQVSNE 68
P ++ + KKR + +EEE+S++ S + V R L E + Q E
Sbjct: 76 PDRERKLKKKKRKVSKGDEEESSESSSESESEDEVAVAARTSKKARLAERHAQKMQKLRE 135
Query: 69 PDDLLFLARKSADLLKKRQNEDESIVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKG 128
+ RK K + E D + ++ + + + +ED +
Sbjct: 136 KREKRKELRKQKKSKGKENDNSEESSDEHAADRFALLRPPPSDDEEEVVKAEDSADQQES 195
Query: 129 GTVEKP------------LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNR 176
E P + W+ L +P +L + + + PT IQ T+P I+ +
Sbjct: 196 TDEEAPELVPISTGEAEDMSAWNGLG-VPASILRAL-GEQGFKTPTQIQALTLPAAIHGK 253
Query: 177 -DFIGVASTGSGKTLAFLLPILI------------------KLHGIPPLNSITKHD---- 213
D +G A TGSGKTLAF +P+L K+ G P + +H+
Sbjct: 254 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 313
Query: 214 -------------------------GPL-ALVLAPTRELAQQIQHEGQSITKLWKRPCNI 247
PL LVL PTRELA Q+++ + K +
Sbjct: 314 PEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKY--TGIRV 371
Query: 248 VSIVGGHSLEEISANLRDGCDILVATPGRX---XXXXXXXXXXXKQVNTLVLDEADKMID 304
+I GG ++ + LR DI+VATPGR + V+ LV+DE D+M++
Sbjct: 372 AAIFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVE 431
Query: 305 FGFEDQLTTIL----AKTETISNRQTMMFTATFSPT------IEKVANGYLKKPSYVTVG 354
G ++L ++L + + RQ +++AT + ++K G K+P +V
Sbjct: 432 KGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVG--KRPKFVKQT 489
Query: 355 GEE-----------SKPKI------KQIVRYVPDEEEKLKILVKD-----FLPNYKAPII 392
++ S+PKI +Q + + + I KD F+ + I
Sbjct: 490 VDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTI 549
Query: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452
+F N L LH + Q+QR +L R+ +LIATDVA RG+
Sbjct: 550 VFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGL 609
Query: 453 DIPNVSLVVNLQFPKSFDSFVHR 475
DIPNV V++ Q P++ +++VHR
Sbjct: 610 DIPNVEHVIHYQVPRTSENYVHR 632
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 113 bits (282), Expect = 8e-25
Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 44/357 (12%)
Query: 131 VEKPLRNWHELKL-IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKT 189
+E+ + ELK + ED++ + + T +Q TIP + +++D + A+TGSGKT
Sbjct: 10 IEEAPPRFSELKPPLSEDIIEALDRS-GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKT 68
Query: 190 LAFLLP---ILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
LAFLLP I+ + + PP K + ++++PTREL+ QI H+ +L C
Sbjct: 69 LAFLLPFIEIIRRSNSYPP-----KPHQVMGVIISPTRELSAQI-HKVARAVRLDFAKCR 122
Query: 247 IVSIVGGHSLEEISANLRDGCDILVATPGR-XXXXXXXXXXXXKQVNTLVLDEADKMIDF 305
V ++LEE +G ++L+ TPGR + + L+LDEAD+++D
Sbjct: 123 EVE-ADMNTLEE------EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDM 175
Query: 306 GFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQI 365
GF+ Q+ I+++ R+T +F+AT + + +A L+ P ++S + +
Sbjct: 176 GFQKQVNYIISRLP--KQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLL 233
Query: 366 VRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQE 425
+ E K K LV F+ ++Y L+ F T HG Q+
Sbjct: 234 I------ENKNKKLVVFFM------TCACVDYWGLVISKIPSLKSISFFPT--HGKMDQK 279
Query: 426 QREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFP---------KSFDSFV 473
R+ +L+ +L+ TDVA RG+DIP + + +L K+F SFV
Sbjct: 280 GRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFV 336
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 112 bits (281), Expect = 1e-24
Identities = 101/368 (27%), Positives = 159/368 (42%), Gaps = 53/368 (14%)
Query: 148 LLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL-IKLHGIPPL 206
LL +T DL ++ PT IQ IP + +D + A TGSGKT A+ +P+L + LH
Sbjct: 18 LLQAVT-DLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLH----- 71
Query: 207 NSITKHDGPL------ALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEIS 260
K GP+ LVL PT+ELA+Q Q Q + R + ++
Sbjct: 72 ---RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 261 ANLRDGCDILVATPGRXXXXXXXXXXXXK-QVNTLVLDEADKMIDFGFEDQLTTILAKTE 319
A L + D++V TP R + + LV+DEAD + FGFE++L ++L
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 320 TISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESK----PKIKQIVRYVPDEEEK 375
I Q + +ATF+ ++ + L P VT+ +ES+ +++Q EE+K
Sbjct: 189 RI--YQAFLMSATFNEDVQALKELILHNP--VTLKLQESQLPGPDQLQQFQVVCETEEDK 244
Query: 376 LKILVKDF-LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLL 434
+L L + ++F+N + L L + L+G R H +S
Sbjct: 245 FLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQF 304
Query: 435 RNGKVDILIATDV---------------------------AGRGIDIPNVSLVVNLQFPK 467
G D +IATD RGID +VS V+N P
Sbjct: 305 NQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPP 364
Query: 468 SFDSFVHR 475
+ ++++HR
Sbjct: 365 TPEAYIHR 372
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 111 bits (278), Expect = 2e-24
Identities = 99/336 (29%), Positives = 156/336 (45%), Gaps = 28/336 (8%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ + T +Q + IP + N+D + A TGSGKTLA+LLP K+ T G A
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV-----TRRDTDETGLGA 75
Query: 218 LVLAPTRELAQQIQHEGQSITKL-------WKRPCNIVSIVGGHSLEEISANLRD-GCDI 269
L++APTRELA QI + + + K+ + I G +L A+ R+ +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 270 LVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMF 329
++ TPGR K + L+LDEAD +ID GF+ L +I+++ R+T +F
Sbjct: 136 VIGTPGR--LNEMLSHISSKHLEILILDEADTLIDMGFQRTLQSIISQLP--KQRRTGLF 191
Query: 330 TATFSPTIE---KVANGYLKKPSYVTVGGEE---SKPKIKQIVRYVPDEEEKLKILVKDF 383
+AT + T+ K+A VTV ++ P I V K++ ++
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLL 251
Query: 384 LPNYKAPIIIFINYKRTADWLFDKL---REARFRATTLHGSKSQEQREHSL-SLLRNGKV 439
I+F + + ++ F+ L + F LHG + Q R + ++ K
Sbjct: 252 CTIEYEKAIVFFSSCASVEY-FNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKK 310
Query: 440 DILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
+L TD+A RG+DIPNV V+ L P SF HR
Sbjct: 311 TVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHR 346
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 111 bits (277), Expect = 3e-24
Identities = 104/445 (23%), Positives = 175/445 (38%), Gaps = 60/445 (13%)
Query: 148 LLNIITNDLHYNEPTSIQRSTIPNVINN-RDFIGVASTGSGKTLAFLLPILIKLHGIPPL 206
LL I N + + PT IQ IP + RD I A+TGSGKTLA+L+P++ +
Sbjct: 28 LLQAIKN-IGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKT 86
Query: 207 NSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDG 266
+ +G L ++L PTRELAQQ+ + + + + ++I S +S L D
Sbjct: 87 IDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQ 146
Query: 267 CDILVATPGRXXXXXXXX--XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNR 324
+I+V TPG+ ++ LV+DE D ++ FG++D L I N
Sbjct: 147 PEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNL 206
Query: 325 QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRY---VPDEEEKLKILVK 381
QT + +AT + I+ + + + P+ + EE ++++Y V + ++ L V
Sbjct: 207 QTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVI 266
Query: 382 DFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDI 441
L K +IF+N L + + ++ L+ R+H + +
Sbjct: 267 FKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQL 326
Query: 442 LIATD--------------------------------------------------VAGRG 451
LIATD RG
Sbjct: 327 LIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRG 386
Query: 452 IDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE-EEDHSAMAKLFDYVKK 510
+D NV+ V+N P + S+VHRV F+ +E + KK
Sbjct: 387 VDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFGKHKPSMLQTAKK 446
Query: 511 NDFTGENYISKEAMSKYNVDKSSYK 535
++ I ++ SK ++ YK
Sbjct: 447 DERILSRIIKQQ--SKLGLELQPYK 469
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 111 bits (277), Expect = 3e-24
Identities = 99/366 (27%), Positives = 161/366 (43%), Gaps = 52/366 (14%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
+L + + +Q S I + N++ +G A TGSGKT AFL+P++ KL N + G
Sbjct: 106 ELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSV--G 163
Query: 215 PLALVLAPTRELAQQIQHEGQSITKL--WKRPCNIVSIVGGHSLEEISANLRDGCDILVA 272
P A+++APT+EL QI +++ + + N+ I + EE S L D ++V
Sbjct: 164 PSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDI----NEEENSVWLEDRSHVVVT 219
Query: 273 TPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTAT 332
TPG+ V+ LV+DEAD ++ FG+E+++ I +K Q +M +AT
Sbjct: 220 TPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLP--PTYQCLMTSAT 277
Query: 333 FSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRY---VPDEEEKLKILVKDF-LPNYK 388
+ + ++ P E P Q+ +Y +EE+ ILV F L
Sbjct: 278 LKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKLIV 337
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
I+F+N L LR ++ L+ + R H ++ G I+IA+DV+
Sbjct: 338 GRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVS 397
Query: 449 --------------------------------------GRGIDIPNVSLVVNLQFPKSFD 470
RGID +VS VVN FP++ D
Sbjct: 398 DADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTD 457
Query: 471 SFVHRV 476
+++HRV
Sbjct: 458 AYIHRV 463
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 111 bits (277), Expect = 3e-24
Identities = 119/404 (29%), Positives = 180/404 (44%), Gaps = 72/404 (17%)
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVI--NNRDFIGVASTGSGKTLAFLLP 195
W ++L P + +I D + EPT IQ++ NV +D IG A TGSGKTLAF LP
Sbjct: 193 WSSMRLHPLLMKSIYRLD--FKEPTKIQKACF-NVAAYQGKDVIGAAETGSGKTLAFGLP 249
Query: 196 ILIKL----HGIPPLNSITKH-------DGPL-ALVLAPTRELAQQIQHEGQSITKLWKR 243
IL +L + L ++ DG L AL++ PTRELA Q+ ++ K
Sbjct: 250 ILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAK--NL 307
Query: 244 PCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTL---VLDEAD 300
+V IVGG E+ L++ +I+VATPGR ++++L VLDEAD
Sbjct: 308 SVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEAD 367
Query: 301 KMIDFGFEDQLTTIL-----------AKTETISN-----------RQTMMFTATF---SP 335
+M++ G +L +IL KT+T+ + RQT +F+AT S
Sbjct: 368 RMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSD 427
Query: 336 TIEKVANGYLK-------KPSYVTVGGEES-----------------KPKIKQIVRYVPD 371
+K+ G K + + + V E + PKI++ +
Sbjct: 428 FRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESF-IKCE 486
Query: 372 EEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSL 431
E+EK L + + I+F + L+ TL Q R S+
Sbjct: 487 EKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSI 546
Query: 432 SLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
R + ILIATD+ RGIDI NV +++ + P S + +VHR
Sbjct: 547 DRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 590
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 110 bits (276), Expect = 4e-24
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 294 LVLDEADKMIDFGFEDQLTTILA--KTETISNRQTMMFTATFSPTIEKVANGYLKKPS-Y 350
LVLDEAD+M+D GFE Q+ I+ + + R T MF+ATF I+ +A +LK+ +
Sbjct: 14 LVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVF 73
Query: 351 VTVG--GEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKL 408
+ VG G S+ +++IV DE+ + + D + + ++F+ KR A L L
Sbjct: 74 LAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGD-SSLTLVFVETKRGASDLAYYL 132
Query: 409 REARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKS 468
+ T+HG Q +RE L L R G IL+AT VA RG+DIPNV V+N P
Sbjct: 133 NRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSD 192
Query: 469 FDSFVHRV 476
D +VHR+
Sbjct: 193 VDEYVHRI 200
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 110 bits (275), Expect = 5e-24
Identities = 95/374 (25%), Positives = 179/374 (47%), Gaps = 27/374 (7%)
Query: 135 LRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLL 194
++ + EL+L +LLN + + ++ PT IQ + IP + D I + +G+GKTL +++
Sbjct: 24 VKTFEELRLY-RNLLNGLKRN-NFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVI 81
Query: 195 PILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGH 254
++ + P +N P A+++ PTRELA Q+Q + K + R + +GG
Sbjct: 82 AVVQSFN--PNINQ------PHAMIVVPTRELAIQVQDTFFHLCKSF-RDFKCSAFIGGT 132
Query: 255 SLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
+ + + + +++ TPGR ++ LVLDEAD++ + + T+
Sbjct: 133 DVAKDRKRMNES-RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQL--YQTKSLQHTV 189
Query: 315 LAKTETI-SNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDE 372
E + NRQ + +AT+ +++ + KP ++ + I+Q V +P +
Sbjct: 190 SKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQ 249
Query: 373 EE-------KLKILVKDF--LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKS 423
KL+IL + F LP +A IIF + + AD + L + + G+
Sbjct: 250 NNSVEEMRLKLQILGQIFNQLPYEQA--IIFASSQMRADSYKNYLTASGIDCHLISGAME 307
Query: 424 QEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXX 483
Q +R H RN + IL+ATD+ RG+D P+ +LV+N+ P+ +++HR+
Sbjct: 308 QSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFG 367
Query: 484 XXXXXXXFLTEEED 497
F+ +++
Sbjct: 368 SKGIAITFIASKKE 381
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 108 bits (269), Expect = 3e-23
Identities = 93/331 (28%), Positives = 153/331 (46%), Gaps = 50/331 (15%)
Query: 161 PTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVL 220
PT +QR IP ++ ++ TGSGKTL+++LP + + + LV+
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHI----------HLLESGDKRLLVI 128
Query: 221 APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXX 280
PTREL Q+ GQ K + IV I G S+E + D+ ++TPGR
Sbjct: 129 VPTRELVSQV---GQVFRKFSEGLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRLREL 185
Query: 281 XXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKV 340
+ +V+DEAD+++ +T IL R + FS T +
Sbjct: 186 LELKSIGGFEY--VVVDEADRLMQHDIRSDVTFIL-------ERMKPEVASFFSATPFEW 236
Query: 341 ANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKA----------- 389
+ G V+VG + +++ YV +++EK+++L + L + +
Sbjct: 237 SGGTRILVGNVSVGRD-----VEEFFMYV-EKKEKMQVL-GEILVSCEGWLAKNMGVDRN 289
Query: 390 -----PIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
II+F N RT + L + R+ LH ++ ++R+ + L G+ +LIA
Sbjct: 290 GLEVKKIIVFCNSIRTCENLHKRFRQL----LVLHSRRTMQERKAVIEALE-GERAVLIA 344
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
TD+ GRGIDI +V LVVN P++ D +VHR
Sbjct: 345 TDLGGRGIDIKDVDLVVNYDLPRAVDGYVHR 375
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 107 bits (268), Expect = 3e-23
Identities = 98/369 (26%), Positives = 170/369 (45%), Gaps = 25/369 (6%)
Query: 118 LSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRD 177
+ E+ +I K +K + N+ EL L E+++ + +L+ PT IQ IP V+ +
Sbjct: 97 VEEESSIRKKS---KKLVENFQELGL-SEEVMGAL-QELNIEVPTEIQCIGIPAVMERKS 151
Query: 178 FIGVASTGSGKTLAFLLPILIKLHGI-----PPLNSITKHDGPLALVLAPTRELAQQI-Q 231
+ + TGSGKTLA+LLPI+ L + L TK P +VL PTREL++Q+
Sbjct: 152 VVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCL 211
Query: 232 HEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQV 291
H+ + + + GG + +L + D++V TPGR +
Sbjct: 212 HQDYHHARF-----RSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDI 266
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYV 351
LVLDEAD M D GF ++ LA ++ ++ ++K+ + + ++
Sbjct: 267 AYLVLDEADTMFDRGFGPEIRKFLA---PLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHL 323
Query: 352 TVGGEESK-PKIKQIVRYVPDEEEKLKILVKDFLPNYK--APIIIFINYKRTADWLFDKL 408
K + + E+KL+ L++ P+ + +++F N ++ + L
Sbjct: 324 RTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYL 383
Query: 409 REARFRATTLHGSKSQEQREHSLSLLRN--GKVDILIATDVAGRGIDIPNVSLVVNLQFP 466
E + HG EQR +L ++ G L+ TD+A RG+D+ +V VV FP
Sbjct: 384 SENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFP 442
Query: 467 KSFDSFVHR 475
K+ ++HR
Sbjct: 443 KNSIDYLHR 451
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 107 bits (267), Expect = 5e-23
Identities = 89/330 (26%), Positives = 151/330 (44%), Gaps = 25/330 (7%)
Query: 158 YNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
+N P+ IQ +P ++ + ++ I + +G+GKT AF+L +L +++ + P
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELF--------P 54
Query: 216 LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPG 275
L LAPT ELA Q + + K C V ++ I I++ TPG
Sbjct: 55 QCLCLAPTYELALQTGRVVEQMGKF----CVDVQVMYAIRGNRIPRGTDITKQIIIGTPG 110
Query: 276 RXXXX-XXXXXXXXKQVNTLVLDEADKMIDF-GFEDQLTTILAKTETISNRQTMMFTATF 333
++ VLDEAD MID GF D +I + S Q ++F+ATF
Sbjct: 111 TVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDH--SIRIQRALPSECQMLLFSATF 168
Query: 334 SPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPII 392
++ A + P+ + + EE + I+Q ++K + L + I
Sbjct: 169 EDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAI 228
Query: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452
IF +R A WL ++ + + + L G + EQR + R+GK +LI T+V RGI
Sbjct: 229 IFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGI 288
Query: 453 DIPNVSLVVNLQFP------KSFDSFVHRV 476
D+ V++VVN P +++++HR+
Sbjct: 289 DVKQVTIVVNFDLPVKQGEEPDYETYLHRI 318
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 107 bits (266), Expect = 6e-23
Identities = 83/333 (24%), Positives = 157/333 (46%), Gaps = 24/333 (7%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG 214
D Y+ PT IQ T ++ + ++ G+GKTL +LLP ++K+H L K G
Sbjct: 49 DQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKK--G 106
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNI-VSIVGGHSLEEISANLRDGCDILVAT 273
P+ L+L RE A +Q E + P + + G+S + A CD+LVA+
Sbjct: 107 PIVLILVDCREAAVMVQRE----VLYYTNPLELRTHCLLGNSQWQGHAE----CDLLVAS 158
Query: 274 PGRXXXXXXXXXXXXK--QVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTA 331
GR + + LVLD D+MID G E + +L + + Q ++ +
Sbjct: 159 AGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRP--HAQLIVSST 216
Query: 332 TFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRY---VPDEEEKLKILVKDFLPNYK 388
++S ++++AN +L + + + VG + Q +R V + K++ L+K+ Y
Sbjct: 217 SWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVERLMKELTAIYD 276
Query: 389 AP-----IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443
++I++ ++ + L D +R +HG ++ ++ + + G +I++
Sbjct: 277 TSDIPGKVVIYVKRQKVVEELVDLIRNC-VPCEGIHGGRTAQENQGIIHDFGTGAYNIIV 335
Query: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
AT + +D+P + V+N FP + D +V R+
Sbjct: 336 ATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRM 368
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 106 bits (264), Expect = 1e-22
Identities = 89/330 (26%), Positives = 150/330 (44%), Gaps = 25/330 (7%)
Query: 158 YNEPTSIQRSTIPNVINN--RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
+N P+ IQ +P ++ + ++ I + +G+GKT AF+L +L +++ + P
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELF--------P 54
Query: 216 LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPG 275
L LAPT ELA Q + + K C V ++ I I++ TPG
Sbjct: 55 QCLCLAPTYELALQTGRVVEQMGKF----CVDVQVMYAIRGNRIPRGTDITKQIIIGTPG 110
Query: 276 RXXXX-XXXXXXXXKQVNTLVLDEADKMIDF-GFEDQLTTILAKTETISNRQTMMFTATF 333
++ VLDEAD MID GF D +I + S Q ++F+ATF
Sbjct: 111 TVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDH--SIRIQRALPSECQMLLFSATF 168
Query: 334 SPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPII 392
++ A + P+ + + EE + I+Q ++K + L + I
Sbjct: 169 EDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAI 228
Query: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452
IF +R A WL ++ + + + L G + EQR R+GK +LI T+V RGI
Sbjct: 229 IFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGI 288
Query: 453 DIPNVSLVVNLQFP------KSFDSFVHRV 476
D+ V++VVN P +++++HR+
Sbjct: 289 DVKQVTIVVNFDLPVKQGEEPDYETYLHRI 318
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 105 bits (262), Expect = 2e-22
Identities = 78/269 (28%), Positives = 119/269 (43%), Gaps = 49/269 (18%)
Query: 213 DGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVA 272
DGP+A++L PTRELA Q E K + GG + E A+L+ G +I+V
Sbjct: 115 DGPIAVILTPTRELAMQTYKEANKFAK--PLGLKVACTYGGVGISEQIADLKRGAEIVVC 172
Query: 273 TPGRXXXXXXXXX---XXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMF 329
TPGR ++V LVLDEAD+M GFE Q
Sbjct: 173 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQ------------------- 213
Query: 330 TATFSPTIEKVANGYLKKPSYVTVGGEESK-PKIKQIVRYVPDEEEKLKILVKDFLPNYK 388
VGG+ I Q + ++ LK+L + +
Sbjct: 214 -----------------------VGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYDE 250
Query: 389 APIIIFINYKRTADWLFDKLREARFRAT-TLHGSKSQEQREHSLSLLRNGKVDILIATDV 447
I+F++ + AD + D+L + + +LHG Q R+ S++ + G + +L+AT V
Sbjct: 251 GSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSV 310
Query: 448 AGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
A RG+D+ N+ LVVN P ++ +VHRV
Sbjct: 311 AARGLDVKNLILVVNYDCPNHYEDYVHRV 339
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 105 bits (261), Expect = 2e-22
Identities = 97/350 (27%), Positives = 154/350 (43%), Gaps = 31/350 (8%)
Query: 144 IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGI 203
+ EDLL I + + + P+ IQ++ I +I+ RD A +G+GKT AF + L
Sbjct: 45 LKEDLLKGIYS-IGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMS 103
Query: 204 PPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL 263
+ I LVLA TRE+A Q + + ++S GG + L
Sbjct: 104 QDVTQI--------LVLASTREIAAQNAARFEDLGCFMGARVALLS--GGSPIAADKVAL 153
Query: 264 RDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN 323
I+V TPGR + V+DEAD+M+ GF++Q+ +I +
Sbjct: 154 EKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDE 213
Query: 324 RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEE--------- 374
Q MF+AT+ +V+ L P V + + +K I +Y D +
Sbjct: 214 VQIAMFSATYDEEELRVSEEILINP--VIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGRE 271
Query: 375 -----KLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREH 429
KL L F I+FIN K A ++D L + + +Q +RE
Sbjct: 272 DYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERER 331
Query: 430 SLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFD---SFVHRV 476
+L+ R G LI++ + RGIDI N+S+V L P SF+ +++HR+
Sbjct: 332 TLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVP-SFERKSTYIHRI 380
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 102 bits (254), Expect = 1e-21
Identities = 102/362 (28%), Positives = 164/362 (45%), Gaps = 26/362 (7%)
Query: 124 ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVAS 183
++SK G V L+ + E KL PE LL + D Y T +Q + +++N D + +
Sbjct: 1 MTSKVGPVA--LKTFRE-KLGPE-LLEVF--DKSYKSFTDVQVLSGTHLLNLSDVVVESP 54
Query: 184 TGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKR 243
TGSGKTLAF+LP++ + N+ + AL+L+P+REL QI Q + K
Sbjct: 55 TGSGKTLAFVLPMMRMIQ-----NAKLQPADIGALILSPSRELCSQIVSVIQPFAE--KL 107
Query: 244 PCNIVSIVGGHSLEE-ISANLRDGCDILVATPGRXXXXX----XXXXXXXKQVNTLVLDE 298
+ ++ GG +++ I +ILVATPGR + + LV+DE
Sbjct: 108 NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDE 167
Query: 299 ADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEES 358
AD+ + FED + IL+ R+T +F+AT + + L+ V V E +
Sbjct: 168 ADRFNEIQFEDHMREILSCIP--KQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERN 225
Query: 359 KPKIKQIVRYVPD--EEEKLKILVKDFLPNYKAPIIIFI---NYKRTADWLFDKLREARF 413
+ Y + +EK + ++ I+IF N R +F++ R
Sbjct: 226 SAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKR- 284
Query: 414 RATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFV 473
+HG S R + + ++I+TDV RGIDI ++ V+ PK FV
Sbjct: 285 PLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFV 344
Query: 474 HR 475
HR
Sbjct: 345 HR 346
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 102 bits (253), Expect = 2e-21
Identities = 108/431 (25%), Positives = 183/431 (42%), Gaps = 43/431 (9%)
Query: 138 WHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL 197
+HEL+L + +L + L + +PT IQ + IP ++ +D + A TGSGKT + LP++
Sbjct: 11 FHELEL-DQRILKAVAQ-LGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 198 IKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLE 257
K+ LN+ ++ A+VLAPT++L +Q + + + + + + I S +
Sbjct: 69 QKILN-SKLNASEQYVS--AVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADS-SND 124
Query: 258 EISAN--LRDGCDILVATPGR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTI 314
++ L + DI+VATP K V TLV+DEAD + +G+E +
Sbjct: 125 TVTQRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRL 184
Query: 315 LAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIK-QIVRYVPDEE 373
+ I Q ++ +AT + + ++ L P + + E P+ + R + +E
Sbjct: 185 IKHLPPI--YQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEEN 242
Query: 374 EKLKILVKDF-LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLS 432
+K IL L + IIF+N + L + RA L+ R H++S
Sbjct: 243 DKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTIS 302
Query: 433 LLRNGKVDILIATD-------------------------VAGRGIDIPNVSLVVNLQFPK 467
G DI+IA+D A RGID V+ V+N FP+
Sbjct: 303 QFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPR 362
Query: 468 SFDSFVHRVXXXXXXXXXXXXXXFLTEEE---DHSAMAKLFDYVKKNDFTGENYISKEAM 524
S++HR F++ +E + S KL D + GE I
Sbjct: 363 DVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFAAQE--GEQIIKNYQF 420
Query: 525 SKYNVDKSSYK 535
V+ Y+
Sbjct: 421 KMEEVESFRYR 431
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 99.4 bits (246), Expect = 1e-20
Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 155 DLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL-IKLHGIPPLNSITKHD 213
+L + T +Q +TIP + N+D A TGSGKTLAF++PIL I L L K
Sbjct: 26 ELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL----KKS 81
Query: 214 GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVAT 273
A+++ PTRELA QI TK + I+ I G + E++ + G +I+VAT
Sbjct: 82 QVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVAT 141
Query: 274 PG------RXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTM 327
PG R + ++ LVLDEAD+++D GFE + TIL R+T
Sbjct: 142 PGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP--KQRRTG 199
Query: 328 MFTATFSPTIEKVANGYLKKPSYVTV-------GGEESKPKIKQIVRYVPDEEEKLKILV 380
+F+AT + +E + L+ P V+V + P + V +EK LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 381 KDFLPNYK 388
FL N+K
Sbjct: 260 -HFLRNHK 266
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 98.2 bits (243), Expect = 3e-20
Identities = 89/325 (27%), Positives = 141/325 (43%), Gaps = 31/325 (9%)
Query: 216 LALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPG 275
L LVL PTRELA Q++ ++ + I +VGG S ++ L +I+VATPG
Sbjct: 389 LGLVLTPTRELAVQVKQHIDAVARFTGIKTAI--LVGGMSTQKQQRMLNRRPEIVVATPG 446
Query: 276 RX---XXXXXXXXXXXKQVNTLVLDEADKMID---FGFEDQLTTILAKTETISNRQTMMF 329
R +Q+ LV+DEAD+M++ F QL +L ++ RQT++F
Sbjct: 447 RLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVF 506
Query: 330 TATFSPTIEKVANGYLKKPS-----------YVTVGGEESKPKIKQIVRY---------- 368
+AT + + A KK + + G KPK+ + R
Sbjct: 507 SATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTET 566
Query: 369 -VPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQR 427
+ E ++ + FL Y ++F N L L+ TLH Q+QR
Sbjct: 567 KIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQR 626
Query: 428 EHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXX 487
+L + +L+ATDVA RG+DIP V V++ Q P++ + +VHR
Sbjct: 627 LRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHR-SGRTARATNEG 685
Query: 488 XXXFLTEEEDHSAMAKLFDYVKKND 512
L ED K++ +KK++
Sbjct: 686 LSLMLIGPEDVINFKKIYKTLKKDE 710
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 97.4 bits (241), Expect = 5e-20
Identities = 89/338 (26%), Positives = 143/338 (41%), Gaps = 63/338 (18%)
Query: 143 LIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHG 202
L+ E+ L I ++ + T IQ TI +++ RD + A TGS + + +KL
Sbjct: 375 LVNENTLKAI-KEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS-------VELTVKLKF 426
Query: 203 IPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISAN 262
+P + P +L+PTRELA QI + I+GG + +
Sbjct: 427 MPT-------NRPGVFILSPTRELAMQIFGGANT-----HHMHTYGLIMGGDNTSAEAQK 474
Query: 263 LRDGCDILVATPGRXXXXXXXX-XXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETI 321
L +G +I+VATPG K + LV+DEAD+++D GFE++L I+ T
Sbjct: 475 LANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTC 534
Query: 322 SNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVK 381
R TM+ +AT + +E +A LKK +
Sbjct: 535 --RHTMLLSATQTRKVEDLARISLKKGA-------------------------------- 560
Query: 382 DFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDI 441
+ N K I++F + + + ++ L +HG + Q + + I
Sbjct: 561 --IKNRKRKIMVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKADSGI 618
Query: 442 LIATDVAGRGIDIPNVSLVVN---LQFPKSFDSFVHRV 476
L+ DVA RG+DIP V +V L PK ++HRV
Sbjct: 619 LLCMDVAARGLDIPEVDWIVQHDPLDDPK---EYIHRV 653
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 97.4 bits (241), Expect = 5e-20
Identities = 83/323 (25%), Positives = 150/323 (45%), Gaps = 21/323 (6%)
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQS 236
D + A +G+GKTL F + + L+S + H + ++ PTRE++ QI+ ++
Sbjct: 51 DMLVQAKSGTGKTLVF------SVLAVENLDSRSSHIQKV--IVTPTREISVQIK---ET 99
Query: 237 ITKLWKRPCNIVSIVGG--HSLEEISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTL 294
+ K+ VGG H L I + I++ TPGR V+
Sbjct: 100 VRKVAPTGARTSVYVGGSAHKLNLIDLK-QTRPQIVIGTPGRIAQLVKLGAMNMSHVDFF 158
Query: 295 VLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVG 354
VLDEADK++D F D + I+ I RQ +F+AT+ ++ + + +L+ + V
Sbjct: 159 VLDEADKLMDEVFRDDINIIINSLPQI--RQVAVFSATYPRNLDNLLSTFLRDAALVRFN 216
Query: 355 GEESKP-KIKQ-IVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREAR 412
++ + IKQ +V EKL ++K ++F + + + L+ +
Sbjct: 217 ADDVQLFGIKQYVVAKCSPMLEKLTHVLKSIR---YVQALVFCDQISKCEPIATHLKSSG 273
Query: 413 FRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
T + + SQ+ R+ ++ LR +V IL+++D+ RGID NV+LVVN+ + +++
Sbjct: 274 LDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETY 333
Query: 473 VHRVXXXXXXXXXXXXXXFLTEE 495
HR+ L +E
Sbjct: 334 FHRIGRAARFGAHGAAVTLLEDE 356
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 97.1 bits (240), Expect = 6e-20
Identities = 71/200 (35%), Positives = 102/200 (50%), Gaps = 18/200 (9%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGP 215
L +PT +Q IP ++ RD +G A TGSGKT AF+LPIL KL P G
Sbjct: 20 LGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP--------YGI 71
Query: 216 LALVLAPTRELAQQIQHEGQSITK-LWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
LVL PTRELA QI + + K L + C IVGG + + L +++ATP
Sbjct: 72 FCLVLTPTRELAYQIAERFRVLGKPLGLKDC---IIVGGMDMVAQALELSRKPHVVIATP 128
Query: 275 GR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFED---QLTTILAKTETISNRQTMMFT 330
GR K++ LV+DEAD++++ G D L ILA + RQT++F+
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP--ARRQTLLFS 186
Query: 331 ATFSPTIEKVANGYLKKPSY 350
AT + T+ ++ +P +
Sbjct: 187 ATLTDTLRELQGLATNQPFF 206
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 95.9 bits (237), Expect = 1e-19
Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 41/361 (11%)
Query: 146 EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPP 205
ED++ + + +++ P IQ VI+ + I +GSGKTLA+L+P++ +L
Sbjct: 383 EDMMKAL-KEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEEL 441
Query: 206 LNSITKHDG-PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLR 264
G P +VL PT ELA Q+ +SI+K P + + GG NL
Sbjct: 442 QGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGV-PFRSMVVTGGFRQRTQLENLE 500
Query: 265 DGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMI-DFGFEDQLTTILAKTETISN 323
G D+L+ATPGR + +LDE D + D FE L ++ + +
Sbjct: 501 QGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTA- 559
Query: 324 RQTMMFTAT-------------------FSPTIEKVANGYLKKPSYVTVGGEESKPKIKQ 364
Q + TAT P + +V+N + V G+++ K +
Sbjct: 560 -QYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNAL--EEFLVDCSGDDNAEKTPE 616
Query: 365 IVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRT---ADWLFDKL--REARFRATTLH 419
+ K L++ N + IIF N T + +F ++ +E + H
Sbjct: 617 TA-----FQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFH 671
Query: 420 GSKSQEQREHSLSLLRNGKVD----ILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
+ SQE R ++ + + + L+ TD A RGID V VV FP+ +V R
Sbjct: 672 AALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRR 731
Query: 476 V 476
V
Sbjct: 732 V 732
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 94.0 bits (232), Expect = 5e-19
Identities = 86/320 (26%), Positives = 140/320 (42%), Gaps = 57/320 (17%)
Query: 213 DGPLALVLAPTRELAQQIQHEGQSITKLWKRP-CNIVSIVGGHSLEEISANLRDGCDILV 271
+ P AL++ P+RELA+Q + + K P + I+GG + + + L +G DI+V
Sbjct: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
Query: 272 ATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN----RQTM 327
TPGR QV LVLDEAD ++ G+ D + + + +++ Q +
Sbjct: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
Query: 328 MFTATF-SPTIEKVANGYLKKPSYVTVGGEESKP-KIKQIVRYVPDEEEKL--------- 376
+ +AT S ++K++ + P++V + GE+S P + +V V + ++L
Sbjct: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
Query: 377 -------------------------KIL-----VKDFLPNYKAPIIIFINYKRTADWLF- 405
KIL V+ + IIF K D L
Sbjct: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
Query: 406 ---------DKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
DK + +F LHG + +R+ +L + G V LI TDVA RGIDI
Sbjct: 525 YFIQQGGGPDK-KGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
Query: 457 VSLVVNLQFPKSFDSFVHRV 476
V V+N+ P ++VHR+
Sbjct: 584 VPYVINVTLPDEKQNYVHRI 603
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 91.7 bits (226), Expect = 3e-18
Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 69/331 (20%)
Query: 152 ITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITK 211
+ ++ Y PT IQR TIP ++ R +GV TGSGKTL +L+P + +
Sbjct: 21 LLRNILYEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQRAIS--------- 71
Query: 212 HDGPLALVLAPTRELAQQ----IQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGC 267
G LV+ PT+EL Q ++ + I + WK ++ I +E +SA++
Sbjct: 72 --GEKTLVIVPTKELVIQARRVLKRLARGIEEAWK----LIEICTPGKIEGMSADM---- 121
Query: 268 DILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTM 327
LV+DE D++++ E L ++ + + Q +
Sbjct: 122 --------------------------LVVDEIDRILE---EPSLKSVFDRINESLSCQKV 152
Query: 328 MFTATFSPTIEKVANGYLKKPSYVTVGGEESK--PKIKQIVRYVPDEEEKLKILVKDFLP 385
F+AT P + V E++ +K Y+P E ++ +L +
Sbjct: 153 FFSATLPD-----------HPLNMKVVEIETRINETVKHFFFYIPSESKEAALLR---IL 198
Query: 386 NYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIAT 445
+ I+F K + L + L + F + ++ S E R + K IL+ T
Sbjct: 199 DKTRKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVT 258
Query: 446 DVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
DVA RG+DIP + VVN +F+HRV
Sbjct: 259 DVAARGLDIPYLDTVVNYDLCDE-RTFLHRV 288
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 91.3 bits (225), Expect = 3e-18
Identities = 95/362 (26%), Positives = 151/362 (41%), Gaps = 71/362 (19%)
Query: 176 RDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHE-- 233
RD + TGSGKTL++ LPI ++L P+ + ALV+ PTR+LA Q++
Sbjct: 25 RDICVNSPTGSGKTLSYALPI-VQLLASRPVRCLR------ALVVLPTRDLALQVKDVFD 77
Query: 234 --------------GQS-----ITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATP 274
GQS I++L K P I + +++S NL DILVATP
Sbjct: 78 AIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGIC--YDPDDLSQNLESAVDILVATP 135
Query: 275 GR-XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN---------- 323
GR + + LV+DE D+++ ++ L T+L T+T +
Sbjct: 136 GRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFV 195
Query: 324 -----------RQT---------------MMFTATFSPTIEKVANGYLKKPSYVTVGGEE 357
RQ+ M+ +AT + K+ L P ++T GG
Sbjct: 196 PSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSR 255
Query: 358 SK-PKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLR---EARF 413
+ P+ + +R + + K LV IIF + T L L + +
Sbjct: 256 YRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKI 315
Query: 414 RATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFV 473
+A G +Q R L R G + +L+A+D RG+D+ V+ V+N P +F+
Sbjct: 316 KAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFI 375
Query: 474 HR 475
HR
Sbjct: 376 HR 377
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 91.3 bits (225), Expect = 3e-18
Identities = 80/312 (25%), Positives = 133/312 (41%), Gaps = 48/312 (15%)
Query: 213 DGPLALVLAPTRELAQQIQHEGQSITKLWKRP-CNIVSIVGGHSLEEISANLRDGCDILV 271
+ P A+++ P+RELA+Q ++ + P + ++GG LEE A L G I+V
Sbjct: 285 NAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVV 344
Query: 272 ATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFE---DQLTTILAKTETISNR-QTM 327
TPGR VLDEAD ++ G+ D+L + K + R Q +
Sbjct: 345 GTPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMV 404
Query: 328 MFTATFSP-TIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPD--------------- 371
+ +AT ++K+A + P++V + GE++ P+ V + D
Sbjct: 405 VCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIG 464
Query: 372 ---------------EEEKLKILVKDFLPNY---------KAPIIIFINYKRTADWLFDK 407
+E L VK Y IIF K+ D L
Sbjct: 465 TDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERF 524
Query: 408 LRE---ARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
LR+ + LHG + ++R+ +L + + +V LI TDVA RG+DI + ++N+
Sbjct: 525 LRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVT 584
Query: 465 FPKSFDSFVHRV 476
P ++VHR+
Sbjct: 585 LPDDKTNYVHRI 596
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 90.1 bits (222), Expect = 8e-18
Identities = 76/333 (22%), Positives = 132/333 (38%), Gaps = 50/333 (15%)
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRP-CNIVSIVGGHSLEEISANLRDGCDILVAT 273
PL ++L PTREL QQ Q+ + P V++ G ++ +I L GCDI+V T
Sbjct: 306 PLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCDIVVGT 365
Query: 274 PGRXXXXXXXXXXXXKQVNTLVLDEADKMI--DFGFEDQLTTILAKTETISNRQTMMFTA 331
P R K + +V+DE D+ + Q+ +I ++ T
Sbjct: 366 PSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQVI 425
Query: 332 TFSPTIE-----KVANGYLKKPSYVTVGG-----------------EESKPKIKQIVRYV 369
S T+ + A+ ++ P ++ + G E K I+Q+ + V
Sbjct: 426 ACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQV 485
Query: 370 PDEEEKL--------------------KIL-----VKDFLPNYKAPIIIFINYKRTADWL 404
E++ + KIL V+ I+F K+ D +
Sbjct: 486 HLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTKQQCDHM 545
Query: 405 FDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
L++ A LHG +S E+R+ SL + G + L+ +DV RG+D+ V V+++
Sbjct: 546 EHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVPFVISVT 605
Query: 465 FPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEED 497
P +VHR+ ++E E+
Sbjct: 606 LPDEKSMYVHRIGRVGRAERMGLSISLVSEYEE 638
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 87.4 bits (215), Expect = 5e-17
Identities = 78/341 (22%), Positives = 146/341 (41%), Gaps = 24/341 (7%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
+ +P++IQ+S + +D + GSGKT+ L+ IL I D L
Sbjct: 16 FEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDIL---------QGIDCEDAHLQ 66
Query: 218 LVL-APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGR 276
++L AP R +AQ+ + +S+ R N+ + G + +A +L+ TP
Sbjct: 67 VILLAPQRGMAQRAHEQLKSLG----RNLNVNATCLGF---DTTAENDKISHVLMGTP-- 117
Query: 277 XXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPT 336
++ VLDEAD+M+ GF+DQ+ + + Q ++ +AT
Sbjct: 118 -KDFLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMP--QDVQVVLLSATMPSE 174
Query: 337 IEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFI 395
+ V N +++ P + V +E + I+Q V +E K L + + +IF
Sbjct: 175 VLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQALIFC 234
Query: 396 NYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIP 455
N +R L ++L + + HG+ +RE + + +L+ TD+ RG++I
Sbjct: 235 NTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNI- 293
Query: 456 NVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
SL++N + ++++ R F TE +
Sbjct: 294 RKSLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTEND 334
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 81.3 bits (199), Expect = 3e-15
Identities = 87/338 (25%), Positives = 154/338 (44%), Gaps = 48/338 (14%)
Query: 177 DFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQS 236
D + A+TGSGKTLA+ +PI+ L +N + +++ PT+ L Q+ +
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFK-RQINRLR------CIIIVPTKLLINQVY---TT 278
Query: 237 ITKLWKRPCNIVSIVG-GHSLEEISANLRD-GCDILVATPGRXXXXXXXXXXXXKQVNTL 294
+TKL + IVSI +SL++ L + DIL+ TPGR K + L
Sbjct: 279 LTKLTQGTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFL 338
Query: 295 VLDEADKMIDFGFEDQLTTILA--KTETI----SNRQTMMFTATFSPTIEKVANGYLKKP 348
++DEAD++++ F+ +++ KT+ + N M+F+AT + EK+ L KP
Sbjct: 339 IIDEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKP 398
Query: 349 SYVTVGGE---ESKPKIKQIVRYVPDEEEKLKILVK-----DFLPN--YKAPIIIFINYK 398
+ + K+ + +P + K L+ F+ + A I+IF+
Sbjct: 399 KLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSN 458
Query: 399 RTA---DWLFDKLREARFR----------ATTLHGSKSQEQREHSLSLLRN-------GK 438
++ L + E+R + A +++ S + + ++ N
Sbjct: 459 ESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAG 518
Query: 439 VDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+ ILI TD+ RGIDI +++ V+N P S +VHRV
Sbjct: 519 ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRV 556
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 79.0 bits (193), Expect = 2e-14
Identities = 69/229 (30%), Positives = 98/229 (42%), Gaps = 15/229 (6%)
Query: 127 KGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGS 186
KG V + + L PE L I+ D + P+ +Q IP I D + A +G
Sbjct: 35 KGSYVSIHSSGFRDFLLKPELLRAIV--DCGFEHPSEVQHECIPQAILGMDVLCQAKSGM 92
Query: 187 GKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCN 246
GKT F +L L I P+N LV+ TRELA QI E + +K +
Sbjct: 93 GKTAVF---VLATLQQIEPVNGQV-----TVLVMCHTRELAFQISKEYERFSK-YMPSVK 143
Query: 247 IVSIVGGHSLEEISANLRDGC-DILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID- 304
+ GG S+++ L+ C ++V TPGR K V VLDE DKM++
Sbjct: 144 VSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQ 203
Query: 305 FGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTV 353
+ I T +Q MMF+AT S I V +++ S V
Sbjct: 204 LDMRRDVQEIFRLTP--HEKQCMMFSATLSKDIRPVCRKFMQDVSRARV 250
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 77.8 bits (190), Expect = 4e-14
Identities = 89/384 (23%), Positives = 155/384 (40%), Gaps = 83/384 (21%)
Query: 182 ASTGSGKTLAFLLPIL--IKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITK 239
A+TGSGKTL++++PI+ + +P L + V+ PTREL Q+ +
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLRCV---------VIVPTRELTVQVAKTFEYYMS 230
Query: 240 LWKRPCNIVSIVGGHSLEEISANLRDG-----CDILVATPGRXXXXXXXXXXXXKQ-VNT 293
+ + G SL + L D+LV+TPGR Q +
Sbjct: 231 --GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRY 288
Query: 294 LVLDEADKMIDFGFEDQLTTI---LAKTETISNR-------------------------- 324
+V+DEAD+++D F+D + T+ ++ + + N+
Sbjct: 289 MVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRL 348
Query: 325 ----QTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE------SKPKIKQIVRYVPDEEE 374
Q ++F+AT + K+A+ L P V V ++ + + IV VP +
Sbjct: 349 PSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQ 408
Query: 375 KLKILVKDFLPNYKAPIIIF--INYKRTADWL-FDKLREARFRATTL------------- 418
+ + V + PI+++ I+ K + L F K EA R L
Sbjct: 409 EYHVSVSS-----EKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFS 463
Query: 419 ----HGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVH 474
S S+++R+ +S G +++L+ +D+ RGID+ N V+N P S S+VH
Sbjct: 464 CGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
Query: 475 RVXXXXXXXXXXXXXXFLTEEEDH 498
R+ + E H
Sbjct: 524 RIGRTARAGREGFAWTLVQSHEGH 547
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 77.0 bits (188), Expect = 7e-14
Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 32/298 (10%)
Query: 137 NWHELKLIPEDLLNIITNDLH------YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTL 190
NW+E+ +D+ N++ + LH +P++IQ+ I I I A +G+GK
Sbjct: 71 NWNEIVDSFDDM-NLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMA 129
Query: 191 AFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI 250
F + IL ++ L + T+ L Q++ ++ C+ +
Sbjct: 130 TFSISILHQIE----------------LDVKATQALIQKVVI---ALGDHMDASCH--TC 168
Query: 251 VGGHSLE-EISANLRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFED 309
+GG ++ E+ + I+V TPG K + VLD+ D+M+ GF+D
Sbjct: 169 IGGTNVHAEVQKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKD 228
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEE-SKPKIKQIVRY 368
Q+ I E SN Q ++ +AT + +V ++++ ++ V EE + I Q
Sbjct: 229 QIYGIFQ--ELNSNTQVVLPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYIN 286
Query: 369 VPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQ 426
+ EE KL L + A +IF+N +R ADWL K+ F + +HG Q++
Sbjct: 287 MEREEWKLDTLGDLYETLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 77.0 bits (188), Expect = 7e-14
Identities = 82/348 (23%), Positives = 154/348 (43%), Gaps = 36/348 (10%)
Query: 163 SIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPIL-IKLHGIPPLNSITKHDGPLALVLA 221
++Q+ +I + + R + A TG GKT AFL+P + I L P L +I+ P L+LA
Sbjct: 117 AVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILA 176
Query: 222 PTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL---RDGCDILVATPGRXX 278
T L +Q+ + + + L +I+ I +E++ A+ +D CDI T G+
Sbjct: 177 NTNSLVEQLFNRCEVLLGLIDME-DIIPI-RDIKIEKLVASYQFTKDQCDIAFCTMGKLK 234
Query: 279 XXXXXXXXXXKQVNTLVLDEADKMIDFG-FEDQLTTIL--AKTETISNRQTMMFTATF-- 333
+ ++LDE+DKMID F + + +L + + + N Q+ F+A+
Sbjct: 235 ASIEDKTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSASHNR 294
Query: 334 ----SPTIEKVANGYL-----------KKPSYVT-----VGGEE-----SKPKIKQIVRY 368
S + + L + P Y+T +GG+ S P I ++
Sbjct: 295 NEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPWIVKMNII 354
Query: 369 VPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQRE 428
++ LK + +K I IF + LR+ + + S ++Q+
Sbjct: 355 CKLLDDDLKEMGSTKEGPWKHTIAIFCETVSRVIQVTMALRQMGYNFKPVCSSVLKQQQA 414
Query: 429 HSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
+L+ L + ++ T++ RGID+ +V + ++ F S++HR+
Sbjct: 415 ITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMHRI 462
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 76.6 bits (187), Expect = 9e-14
Identities = 78/332 (23%), Positives = 137/332 (40%), Gaps = 30/332 (9%)
Query: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217
++ P Q+ IP + + I A TGSGKTL++ LP++ G +I PL
Sbjct: 45 FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMARGRSLFGAILVPGKPL- 103
Query: 218 LVLAPTRELAQQIQHEGQSITKLW------------KRPCNIVSIVGGHSLEEISANLRD 265
+ + ++I+HEG + ++ ++ + + E I+ +LR
Sbjct: 104 --VRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRA 161
Query: 266 GCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQ 325
+L+ TP + V LV+DEAD +I+ +IL+ E
Sbjct: 162 SARVLIGTP--RSVLGLMSMSEIRNVTHLVIDEADLLINPETVGVFASILSVIEMED--- 216
Query: 326 TMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLP 385
+ + FS T+ + + ++ +T SK I + + K L++
Sbjct: 217 --IHISCFSATMNEYVSEVIETVKSITKIRVVSKRLIDHEFVFGTSRKIKHLSLLQIIAD 274
Query: 386 NYKAPIIIFINYKRTADWLFDKL-REARFRATTLHGSKSQEQREHSLSLLRNGKVDILIA 444
++P +IF+ ++T + L L + A +R + QE L R K+ L
Sbjct: 275 GIESPTLIFVKDEKTGEALSMLLGKSAVYR-------EDQEGSGEVLDGFRLKKIWYLFT 327
Query: 445 TDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
TD RGID N+ V+N P + FVHR+
Sbjct: 328 TDSLSRGIDFYNIRSVINYDLPSTKTQFVHRI 359
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 73.6 bits (179), Expect = 7e-13
Identities = 54/169 (31%), Positives = 84/169 (48%), Gaps = 3/169 (1%)
Query: 263 LRDGCDILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAK-TETI 321
L GC +LVATPG LVLDEAD+M+D GF Q+ IL + T +
Sbjct: 235 LEHGCHLLVATPGGLVDLMERGKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPL 294
Query: 322 SN-RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPK-IKQIVRYVPDEEEKLKIL 379
MMF+ATF I+ +A +L + ++ VG S + I Q V +V + +++ +L
Sbjct: 295 KGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSETITQEVVWVEEPDKRSFLL 354
Query: 380 VKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQRE 428
P + ++F+ K+ D L + L + T++HG +SQ RE
Sbjct: 355 DLLNAPGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDRE 403
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 73.2 bits (178), Expect = 1e-12
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 52/208 (25%)
Query: 269 ILVATPGRXXXXXXXXXXXXKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMM 328
I++ TPGR K + VLDEAD+M+ F+DQ+ I SN Q ++
Sbjct: 62 IIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLN--SNTQVVL 119
Query: 329 FTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYK 388
+AT + +V +++ P + V EE + +KDF
Sbjct: 120 LSATIPSDVLEVTKKFMRDPIRILVKKEE--------------------LTLKDFT---- 155
Query: 389 APIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVA 448
+ +HG Q++R+ + R+G +LI TD+
Sbjct: 156 --------------------------VSAMHGDMDQKERDVVMREYRSGSSRVLITTDLL 189
Query: 449 GRGIDIPNVSLVVNLQFPKSFDSFVHRV 476
RGID+ +SLV+N P + ++++HR+
Sbjct: 190 PRGIDVQQLSLVINYDPPTNRENYIHRI 217
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 73.2 bits (178), Expect = 1e-12
Identities = 99/402 (24%), Positives = 152/402 (37%), Gaps = 80/402 (19%)
Query: 161 PTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVL 220
P ++ P RD A TGSGKTLAF +PI+ L S ALV+
Sbjct: 169 PWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIV-------QLLSQRVDCKVRALVV 221
Query: 221 APTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRD--------GCDILVA 272
P ELA Q+ + K + + H LE+ L + DI+V
Sbjct: 222 LPVAELALQVYRVISELCS--KTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVT 279
Query: 273 TPGRXXXXXXXXXXX-XKQVNTLVLDEADKMIDFGFEDQL---------TT--ILAKTET 320
TPGR K + LV+DEAD+++D F++ L TT +LA T+
Sbjct: 280 TPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQA 339
Query: 321 I-----------SNRQTMMFTATFSPTIEKVANGYLKKPS-YVTVGGEESKPKIKQIVRY 368
++F+AT S EK+ + L +P + TV + P +K
Sbjct: 340 PLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATV---LTMPVLKDATEE 396
Query: 369 VPDEEEKLKILVKDFLPNYKAPIIIFINY--------KRTADWLFDKLREARF------- 413
D E F+ Y P + Y T L +K + RF
Sbjct: 397 GADTEALTD--PGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSS 454
Query: 414 -------------------RATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDI 454
+ + L G+ S + R L GK++ LI +D RGID+
Sbjct: 455 DQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDV 514
Query: 455 PNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTEEE 496
+V +V++ + P+ +++HRV LTE++
Sbjct: 515 ADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 72.0 bits (175), Expect = 2e-12
Identities = 85/362 (23%), Positives = 149/362 (40%), Gaps = 49/362 (13%)
Query: 156 LHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSIT-KHDG 214
+H ++Q+ +I + R + A TG GKT AFL+P + N
Sbjct: 111 VHVTTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPS 170
Query: 215 PLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISAN---LRDGCDILV 271
P L++A T L Q+ + + I L + + V + ++++ AN + CDI
Sbjct: 171 PSILIMASTSALVDQLFNRCELILGL--QCMDNVEPIRDIKIDKLVANHPFTKGQCDIAF 228
Query: 272 ATPGRXXXXXXXXXXXXKQVNTLVLDEADKMID---FGFEDQLTTILAKTETISNRQTMM 328
T G+ + T++LDEADKMID FG + K E + N Q+
Sbjct: 229 CTIGKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCF 288
Query: 329 FTATFSPTIEKVANGYL----------------------KKPSYVT---VGGEESKPK-- 361
F+AT++ K ANG + + Y+T V +P
Sbjct: 289 FSATYN----KNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDI 344
Query: 362 ------IKQ-IVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFR 414
IK I+R + D++ K KD Y I IF + + LR+ +
Sbjct: 345 RSHPWVIKMGIIRKLIDDDLKETGCSKD--GPYNETIAIFCETVQRVTQVTMALRQLGYN 402
Query: 415 ATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVH 474
+ ++ Q+ +++ L K+ ++ T++ RGID+ +V + ++ FD++ H
Sbjct: 403 FKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFDTYKH 462
Query: 475 RV 476
R+
Sbjct: 463 RI 464
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 70.9 bits (172), Expect = 5e-12
Identities = 75/320 (23%), Positives = 136/320 (42%), Gaps = 34/320 (10%)
Query: 164 IQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSI-TKHDGPLALVLAP 222
+Q+ +I + R + A TG GKT AFL+P + N + P L++A
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 223 TRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISAN---LRDGCDILVATPGRXXX 279
T L Q+ + + I L + + V + ++++ AN + CDI T G+
Sbjct: 79 TSALVDQLFNRCELILGL--QCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKLKA 136
Query: 280 XXXXXXXXXKQVNTLVLDEADKMID-FGFEDQLTTIL--AKTETISNRQTMMFTATFSPT 336
+ T++LDEADKMID F + IL K E + N Q+ F+AT++
Sbjct: 137 TIECGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATYN-- 194
Query: 337 IEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFIN 396
K ANG + + + + E++ K Y I IF
Sbjct: 195 --KNANGTI---------------ALTVLQMRMLGEDDPCKD------GPYNETIAIFCE 231
Query: 397 YKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPN 456
+ + LR+ + + ++ Q+ +++ L K+ ++ T++ RGID+ +
Sbjct: 232 TVQRVTQVTMTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGIDVSS 291
Query: 457 VSLVVNLQFPKSFDSFVHRV 476
V + ++ FD++ HR+
Sbjct: 292 VKHTIIMEMSADFDTYKHRI 311
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 67.4 bits (163), Expect = 5e-11
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 76 ARKSADLLKKRQNEDESIVDNYLGKHWSE---------KKYEEMSTRDWRILSEDFN--- 123
AR + +L KK +E+ + N W+ K+E RD RI E F+
Sbjct: 279 ARNAQNLTKKLTFFNENYLKNDQNTRWNNLDAPPSRGTSKWENRGARDERIEQELFSGQL 338
Query: 124 ------------ISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPN 171
+ + G V +P+ + +L L NI T Y+ PT +Q+ +IP
Sbjct: 339 SGINFDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAG--YDRPTPVQKYSIPA 396
Query: 172 VINNRDFIGVASTGSGKTLAFLLPILIKLHGIPP---LNSITKHDG-----PLALVLAPT 223
+ RD + A TGSGKT AFL+P++ + P S+T G P ALVL+PT
Sbjct: 397 LQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPT 456
Query: 224 RELAQQI 230
REL+ Q+
Sbjct: 457 RELSLQV 463
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 66.2 bits (160), Expect = 1e-10
Identities = 110/520 (21%), Positives = 196/520 (37%), Gaps = 98/520 (18%)
Query: 33 EEEEASKALSHTVIKRKDNYRNLDEDELYEEQVSNEPDDLLFLARKSADLLKKRQNEDES 92
E+++ KA+ ++KRK+ + D + E + +N + R + NED+
Sbjct: 91 EKQDREKAMKRKIMKRKNQKEDSDTENDDEIEPANGDGIEQEMNRVT------NGNEDDE 144
Query: 93 IVDNYLGKHWSEKKYEEMSTRDWRILSEDFNISSKGGTVEKPLRNWHELKLIPEDLLNII 152
V N + + + E+ + +++ ++ ++N LK+ + N
Sbjct: 145 SVGNDVAEPMETEDVEDSGEVEIEETAQNGEREIFKVLGKQEMKNLEALKVTSSWVQNAT 204
Query: 153 TNDLHYNEPTSIQRS--------TIPNVINN------------------------RDFIG 180
T + TS + S T+P+ I+ RD
Sbjct: 205 TFSATIDSSTSQKLSQIELPEHLTVPSAISTWFPVQYAVLPSLFFEIRSPPPLRPRDVAI 264
Query: 181 VASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKL 240
A TGSGKT+ ++LP+L + P + I + A++L P + L QI E K
Sbjct: 265 AAPTGSGKTICYVLPVLAAVGSKP--SKILQ-----AVILVPVQTLVAQIVDE----FKR 313
Query: 241 WKRP---CNIVSIVGGHSLEEISANLR-DGCDILVATPGRXXXXXXXXX---XXXKQVNT 293
W +VS+ G + E+ + L D +++VATP R ++
Sbjct: 314 WNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRF 373
Query: 294 LVLDEADKMIDFGFEDQLTTI----------LAKTETISNR---QTMMFTATFSPTIEKV 340
L++DEAD+M E+ L + + I R Q ++ +AT S +E++
Sbjct: 374 LIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEEL 433
Query: 341 ANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEE-------------KLKILVKDFLP-- 385
L KP + + +K I +P + +L + F P
Sbjct: 434 HLWNLFKPRLFSA----TAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLA 489
Query: 386 -------NYKAPIIIFINYKRTADWLFDKLREA---RFRATTLHGSKSQEQREHSLSLLR 435
N +IF+N +++ L L+E +F ++R L
Sbjct: 490 VYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFN 549
Query: 436 NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHR 475
+ +LI +DV RG D+ V V+N P FVHR
Sbjct: 550 KNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHR 589
>Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 372
Score = 59.7 bits (143), Expect = 1e-08
Identities = 47/158 (29%), Positives = 76/158 (47%), Gaps = 9/158 (5%)
Query: 311 LTTILAKTETISNRQTMMFTATFSPTIEK-VANGYLKKPSYVTVGGEESKPKIKQIVRYV 369
+T +LA + T S+ Q +TA+ +P ++ V +G +T+ G IKQ V
Sbjct: 221 VTEVLASSHTSSSHQC--YTASRNPRDDQQVHDGPNPHLGELTLEG------IKQPFVAV 272
Query: 370 PDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREH 429
EE K I + ++IF N KR DWL +K+R+A +++H Q+ +
Sbjct: 273 EREEWKFDIPCDLYEMLTVIQVVIFCNTKRKVDWLMEKMRDAALTVSSMHRDTPQKGPQS 332
Query: 430 SLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPK 467
+G LI+TDV D+P VS+++N PK
Sbjct: 333 VSKEFPSGTSTGLISTDVWAGRSDVPQVSVIINYDLPK 370
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 58.9 bits (141), Expect = 2e-08
Identities = 38/103 (36%), Positives = 60/103 (57%), Gaps = 4/103 (3%)
Query: 251 VGGHSLEEISANLRDGCDILVATPGRXXXXXXXX-XXXXKQVNTLVLDEADKMIDFGFED 309
+GG + + L +G +I+VAT GR K + LV+DEAD+++D GFE+
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 310 QLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKK-PSYV 351
+L I+ +++RQTM+F+AT + +E +A LKK P YV
Sbjct: 61 ELKQIIKL--LLTHRQTMLFSATQTQKVEDLARISLKKEPLYV 101
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 55.8 bits (133), Expect = 2e-07
Identities = 85/372 (22%), Positives = 149/372 (39%), Gaps = 89/372 (23%)
Query: 182 ASTGSGKTLAFLLPILIKLH----GIPPL-NSITKHDGPLALVLAPTRELAQQIQHEGQS 236
A TGSGKT+A+L+P++ L P L ++ K+ +++L PT EL Q+ +E S
Sbjct: 164 AETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQV-YETVS 222
Query: 237 ITKLWKRPCNIVSIVGGHSLEEISANLRDGCDILVATPGRXXXXXXXXXXX-----XKQV 291
TK N S ++ N+++ DILV TPG+ +V
Sbjct: 223 KTKT-LLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKV 281
Query: 292 NTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKK--PS 349
+VLDEAD ++D + ++ + + + I N ++F S TI + N +++ P+
Sbjct: 282 GFVVLDEADTLLDRSWLEETHSAIKR---IPNINHLIFC---SATIPQEFNKTMQRLFPT 335
Query: 350 YVTVGGEESKPKIKQI----------VRYVPDEEEKLKILVK--------DFLPNYKAPI 391
V + P++ ++ P + K+K L + D P ++
Sbjct: 336 VVPI----MTPRLHKLPFALDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRC 391
Query: 392 IIFINYKRTADWLFDKL-REARFRATTLHGSKSQEQREHSL------------------- 431
IIF+N K+ + + L ++ A L G + E+R +
Sbjct: 392 IIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTS 451
Query: 432 ---SLLR------------------------NGKVDILIATDVAGRGIDIPNVSLVVNLQ 464
SL + N + +L+ TD+ RG++ V VV
Sbjct: 452 PPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYD 511
Query: 465 FPKSFDSFVHRV 476
PK+ +HRV
Sbjct: 512 VPKTSIDLIHRV 523
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 53.9 bits (128), Expect = 6e-07
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 8/179 (4%)
Query: 323 NRQTMMFTATFSPTIEKVANGYLKK--PSYVTVGGE---ESKPKIKQ--IVRYVPDEEEK 375
++Q + AT +K A G LK V V G + P++KQ + V + +
Sbjct: 352 SKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQVDA 411
Query: 376 LKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLR 435
L VK+ ++F N + + D L +A + H + ++R + L+ R
Sbjct: 412 LIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFR 471
Query: 436 NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVXXXXXXXXXXXXXXFLTE 494
+ + TD A RG+D+PNVS V+ F S F+HR+ TE
Sbjct: 472 ETG-GVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTE 529
Score = 51.6 bits (122), Expect = 3e-06
Identities = 48/190 (25%), Positives = 82/190 (42%), Gaps = 19/190 (10%)
Query: 137 NWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPI 196
+W L L D ++I D ++ P+ Q IP++++ +D I A TGSGKT +L PI
Sbjct: 81 SWKSLGL--SDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPI 138
Query: 197 LIKLHGIPPLNSITKHD------GPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI 250
+ +L + +T + ++L+L P L +Q+ + P V
Sbjct: 139 IDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEA 198
Query: 251 VGGHSLEEISANLRDGC-DILVATP----GRXXXXXXXXXXXXKQVNTLVLDEADKMIDF 305
V G S D DI+V+TP + V +V DEAD ++
Sbjct: 199 VCG------SQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCG 252
Query: 306 GFEDQLTTIL 315
F++Q+ ++
Sbjct: 253 SFQNQIIRLI 262
>CE13130_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 873
Score = 52.4 bits (124), Expect = 2e-06
Identities = 76/346 (21%), Positives = 135/346 (38%), Gaps = 44/346 (12%)
Query: 146 EDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPP 205
++L + + + +N+ Q+ I + + D + TG+GK+L + LP +I L G+
Sbjct: 118 KELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVI-LPGV-- 174
Query: 206 LNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANLRD 265
+V++P R L I+ + + +L + + +G + E+I A L
Sbjct: 175 -----------TVVVSPLRSL---IEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGS 220
Query: 266 G---CDILVATPGRXXXXXXXXXXXXKQ-----VNTLVLDEADKMIDFG--FEDQLTTIL 315
G +L TP + + V+DEA + +G F T +
Sbjct: 221 GNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLS 280
Query: 316 AKTETISNRQT--MMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVR------ 367
+ E +N + TAT +P I A +LK + SK I VR
Sbjct: 281 SLREKYANPPVPIIALTATATPKIVTDARDHLKM--------QNSKLFISSFVRDNLKYD 332
Query: 368 YVPDEEEKLKILVKDFLPNYKAPI-IIFINYKRTADWLFDKLREARFRATTLHGSKSQEQ 426
+P L +V+ Y I++ ++ + + L +A A H +
Sbjct: 333 LIPKAARSLINVVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNL 392
Query: 427 REHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSF 472
R K D++ AT G GID P+V V++ PKS + +
Sbjct: 393 RVSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGY 438
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 50.8 bits (120), Expect = 5e-06
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 289 KQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPTIEKVANGYLKK- 347
K + LV+DEAD+++D GFE++L I+ +++RQTM+F+AT + +E +A LKK
Sbjct: 47 KNLQCLVIDEADRILDVGFEEELKQIIKL--LLTHRQTMLFSATQTQKVEDLARISLKKE 104
Query: 348 PSYV 351
P YV
Sbjct: 105 PLYV 108
>CE23511 [R] KOG0354 DEAD-box like helicase
Length = 811
Score = 50.8 bits (120), Expect = 5e-06
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 355 GEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLF----DKLRE 410
G P I + V+++ D+ E+ +++A IIF+ K+ AD+L D+L E
Sbjct: 451 GSAENPMIARTVQFILDQNEQTS--------DFRA--IIFVRTKKEADFLNYVLNDRLHE 500
Query: 411 ARFRATTLHGSK-----------SQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSL 459
++ + G K S++++ L + +G+ IL++T VA G+DIP SL
Sbjct: 501 LGIKSDWMSGQKKSTASSADISASKQKQMEKLKMFADGENQILVSTSVAEEGLDIPECSL 560
Query: 460 VVNLQFPKSFDSFVHR 475
V+ + + + V R
Sbjct: 561 VIKYNYATNETAHVQR 576
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,857,002
Number of Sequences: 60738
Number of extensions: 1407746
Number of successful extensions: 5754
Number of sequences better than 1.0e-05: 239
Number of HSP's better than 0.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 4669
Number of HSP's gapped (non-prelim): 301
length of query: 539
length of database: 30,389,216
effective HSP length: 111
effective length of query: 428
effective length of database: 23,647,298
effective search space: 10121043544
effective search space used: 10121043544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)