ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3811 check: MH A KOG0331 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3811 1346715 1345204 -504
(504 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL078c [A] KOG0331 ATP-dependent RNA helicase 689 0.0
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 442 e-124
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 392 e-109
YNL112w [A] KOG0331 ATP-dependent RNA helicase 340 4e-93
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 332 8e-91
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 327 3e-89
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 324 2e-88
CE18785 [A] KOG0331 ATP-dependent RNA helicase 320 2e-87
7295314 [A] KOG0331 ATP-dependent RNA helicase 320 2e-87
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 320 3e-87
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 315 1e-85
7296646 [A] KOG0331 ATP-dependent RNA helicase 313 5e-85
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 311 1e-84
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 303 3e-82
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 294 2e-79
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 294 2e-79
7290853 [A] KOG0331 ATP-dependent RNA helicase 290 3e-78
7298989 [A] KOG0336 ATP-dependent RNA helicase 283 4e-76
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 276 4e-74
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 275 9e-74
YPL119c [A] KOG0335 ATP-dependent RNA helicase 271 1e-72
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 271 2e-72
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 269 8e-72
7294797 [A] KOG0339 ATP-dependent RNA helicase 267 3e-71
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 266 7e-71
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 265 2e-70
7299061 [A] KOG0335 ATP-dependent RNA helicase 263 3e-70
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 260 3e-69
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 260 4e-69
YOR204w [A] KOG0335 ATP-dependent RNA helicase 255 9e-68
Hs7662318 [A] KOG0334 RNA helicase 253 4e-67
At1g20920 [A] KOG0334 RNA helicase 252 8e-67
CE22474 [A] KOG0336 ATP-dependent RNA helicase 251 2e-66
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 246 6e-65
7293060 [A] KOG0334 RNA helicase 246 8e-65
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 245 1e-64
CE17559 [A] KOG0339 ATP-dependent RNA helicase 243 5e-64
SPCC10H11.01 [A] KOG0334 RNA helicase 240 3e-63
7298204 [A] KOG0335 ATP-dependent RNA helicase 239 5e-63
CE28369 [A] KOG0335 ATP-dependent RNA helicase 239 7e-63
CE24451 [A] KOG0335 ATP-dependent RNA helicase 239 7e-63
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 239 9e-63
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 237 3e-62
CE28031 [A] KOG0334 RNA helicase 237 3e-62
CE27427 [A] KOG0334 RNA helicase 237 3e-62
At3g09620 [A] KOG0334 RNA helicase 232 9e-61
7296891 [A] KOG0341 DEAD-box protein abstrakt 227 4e-59
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 225 1e-58
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 223 4e-58
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 223 4e-58
CE23832 [A] KOG0341 DEAD-box protein abstrakt 223 4e-58
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 221 2e-57
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 221 2e-57
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 221 3e-57
7304081 [A] KOG0338 ATP-dependent RNA helicase 221 3e-57
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 219 8e-57
YHR065c [A] KOG0330 ATP-dependent RNA helicase 218 1e-56
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 216 5e-56
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 216 5e-56
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 216 6e-56
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 215 1e-55
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 212 1e-54
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 211 2e-54
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 211 2e-54
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 208 1e-53
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 207 2e-53
CE00337 [A] KOG0330 ATP-dependent RNA helicase 206 5e-53
YLL008w [A] KOG0338 ATP-dependent RNA helicase 205 1e-52
CE27030 [A] KOG0338 ATP-dependent RNA helicase 205 1e-52
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 204 3e-52
7298752 [A] KOG0330 ATP-dependent RNA helicase 203 4e-52
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 202 7e-52
YGL171w [A] KOG0344 ATP-dependent RNA helicase 201 2e-51
CE25121 [A] KOG0335 ATP-dependent RNA helicase 199 8e-51
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 199 1e-50
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 194 3e-49
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 193 6e-49
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 193 6e-49
7293941 [A] KOG0344 ATP-dependent RNA helicase 191 2e-48
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 191 3e-48
CE09012 [A] KOG0335 ATP-dependent RNA helicase 191 3e-48
CE27553 [A] KOG0337 ATP-dependent RNA helicase 189 6e-48
7303950 [A] KOG0340 ATP-dependent RNA helicase 189 1e-47
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 188 1e-47
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 188 1e-47
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 187 4e-47
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 186 7e-47
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 186 7e-47
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 185 1e-46
CE07736 [A] KOG0335 ATP-dependent RNA helicase 185 2e-46
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 180 4e-45
CE29052 [A] KOG0335 ATP-dependent RNA helicase 180 5e-45
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 179 7e-45
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 179 9e-45
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 179 1e-44
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 179 1e-44
YBR237w [A] KOG0334 RNA helicase 178 2e-44
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 178 2e-44
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 177 3e-44
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 177 3e-44
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 177 3e-44
YDL031w [A] KOG0337 ATP-dependent RNA helicase 176 7e-44
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 176 1e-43
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 176 1e-43
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 175 1e-43
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 175 1e-43
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 175 2e-43
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 175 2e-43
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 174 2e-43
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 174 4e-43
7297629 [A] KOG0326 ATP-dependent RNA helicase 173 5e-43
YJL033w [A] KOG0343 RNA Helicase 173 6e-43
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 173 6e-43
CE00839 [A] KOG0326 ATP-dependent RNA helicase 173 6e-43
YDL160c [A] KOG0326 ATP-dependent RNA helicase 172 1e-42
SPBC4F6.07c [A] KOG0347 RNA helicase 172 1e-42
SPAC1093.05 [A] KOG0343 RNA Helicase 172 1e-42
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 170 4e-42
YHR169w [A] KOG0340 ATP-dependent RNA helicase 169 7e-42
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 169 7e-42
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 169 1e-41
CE23814 [A] KOG0340 ATP-dependent RNA helicase 168 2e-41
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 168 2e-41
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 168 2e-41
CE25231 [A] KOG0343 RNA Helicase 167 4e-41
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 166 1e-40
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 166 1e-40
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 166 1e-40
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 165 2e-40
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 164 4e-40
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 164 4e-40
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 163 6e-40
YBR142w [A] KOG0347 RNA helicase 161 2e-39
7293369 [A] KOG0343 RNA Helicase 161 2e-39
CE28485 [K] KOG4284 DEAD box protein 161 2e-39
CE26264 [A] KOG0335 ATP-dependent RNA helicase 161 2e-39
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 160 3e-39
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 160 4e-39
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 160 5e-39
Hs14251212 [K] KOG4284 DEAD box protein 160 5e-39
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 160 5e-39
YFL002c [A] KOG0345 ATP-dependent RNA helicase 159 7e-39
CE06239 [A] KOG0344 ATP-dependent RNA helicase 159 7e-39
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 159 1e-38
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 158 2e-38
Hs13514831 [A] KOG0343 RNA Helicase 157 3e-38
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 157 4e-38
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 157 5e-38
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 5e-38
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 156 8e-38
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 155 1e-37
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 155 2e-37
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 155 2e-37
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 154 3e-37
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 153 5e-37
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 153 7e-37
At5g54910 [A] KOG0343 RNA Helicase 152 9e-37
7302399 [A] KOG0347 RNA helicase 152 1e-36
At3g16840 [A] KOG0347 RNA helicase 151 2e-36
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 151 2e-36
7299006 [A] KOG0345 ATP-dependent RNA helicase 151 3e-36
YDL084w [A] KOG0329 ATP-dependent RNA helicase 150 6e-36
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 150 6e-36
ECU10g1680 [A] KOG0343 RNA Helicase 149 7e-36
CE11190 [A] KOG0347 RNA helicase 149 1e-35
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 147 4e-35
YOR046c [A] KOG0332 ATP-dependent RNA helicase 146 6e-35
CE03025 [A] KOG0329 ATP-dependent RNA helicase 146 6e-35
7294824 [K] KOG4284 DEAD box protein 146 6e-35
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 146 8e-35
CE11402 [A] KOG0334 RNA helicase 145 2e-34
CE27336 [A] KOG0334 RNA helicase 143 5e-34
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 143 7e-34
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 143 7e-34
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 141 2e-33
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 141 2e-33
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 141 3e-33
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 140 3e-33
7290730 [A] KOG0331 ATP-dependent RNA helicase 140 4e-33
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 137 4e-32
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 136 8e-32
7296990 [A] KOG0329 ATP-dependent RNA helicase 136 8e-32
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 135 1e-31
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 134 2e-31
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 134 2e-31
7293348 [A] KOG0348 ATP-dependent RNA helicase 130 5e-30
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 130 6e-30
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 129 8e-30
CE29051 [A] KOG0335 ATP-dependent RNA helicase 129 1e-29
7295505 [A] KOG0346 RNA helicase 127 5e-29
7296165 [A] KOG0330 ATP-dependent RNA helicase 125 1e-28
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 124 3e-28
Hs9966805 [A] KOG0347 RNA helicase 123 6e-28
At4g34910 [A] KOG0346 RNA helicase 123 7e-28
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 122 1e-27
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 122 1e-27
Hs9506931 [A] KOG0346 RNA helicase 121 3e-27
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 120 4e-27
CE03821 [A] KOG0345 ATP-dependent RNA helicase 119 8e-27
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 119 8e-27
CE27728 [A] KOG0346 RNA helicase 119 1e-26
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 118 2e-26
YLR276c [A] KOG0346 RNA helicase 118 2e-26
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 117 3e-26
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 117 3e-26
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 117 4e-26
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 114 3e-25
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 113 6e-25
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 113 8e-25
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 112 1e-24
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 112 2e-24
CE18221 [A] KOG0332 ATP-dependent RNA helicase 111 2e-24
CE18220 [A] KOG0332 ATP-dependent RNA helicase 111 2e-24
CE18219 [A] KOG0332 ATP-dependent RNA helicase 111 2e-24
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 111 2e-24
SPCC1494.06c [A] KOG0346 RNA helicase 110 5e-24
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 110 6e-24
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 108 2e-23
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 108 2e-23
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 105 2e-22
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 104 4e-22
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 104 4e-22
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 103 5e-22
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 102 1e-21
YKR024c [A] KOG0348 ATP-dependent RNA helicase 101 3e-21
CE06825 [A] KOG0335 ATP-dependent RNA helicase 94 6e-19
YGL064c [A] KOG0335 ATP-dependent RNA helicase 91 5e-18
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 89 2e-17
CE28975 [A] KOG0335 ATP-dependent RNA helicase 84 6e-16
At2g28600 [A] KOG0339 ATP-dependent RNA helicase 83 1e-15
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 81 4e-15
CE15167 [A] KOG0335 ATP-dependent RNA helicase 80 5e-15
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 80 7e-15
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 79 1e-14
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 72 2e-12
YMR190c [L] KOG0351 ATP-dependent DNA helicase 72 3e-12
7299503 [L] KOG0351 ATP-dependent DNA helicase 69 2e-11
CE27320 [A] KOG0335 ATP-dependent RNA helicase 65 2e-10
SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase 65 2e-10
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 64 5e-10
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 63 1e-09
At1g10930 [L] KOG0351 ATP-dependent DNA helicase 61 4e-09
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 60 1e-08
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 58 3e-08
Hs14591902 [R] KOG0353 ATP-dependent DNA helicase 57 5e-08
Hs4759030 [L] KOG0351 ATP-dependent DNA helicase 57 8e-08
Hs22045464 [A] KOG0343 RNA Helicase 57 8e-08
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 56 1e-07
CE13130_2 [L] KOG0351 ATP-dependent DNA helicase 56 1e-07
ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase 55 2e-07
Hs4557365 [L] KOG0351 ATP-dependent DNA helicase 55 3e-07
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 55 3e-07
Hs4759032 [L] KOG0352 ATP-dependent DNA helicase 54 5e-07
At1g60930 [L] KOG0351 ATP-dependent DNA helicase 53 9e-07
Hs5739524_2 [L] KOG0351 ATP-dependent DNA helicase 52 2e-06
CE00941 [L] KOG0352 ATP-dependent DNA helicase 51 4e-06
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 689 bits (1778), Expect = 0.0
Identities = 347/440 (78%), Positives = 383/440 (86%), Gaps = 1/440 (0%)
Query: 65 SASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWP 124
S QSDIDE+ KENE+ V D + P L F +S IQ EISKFPKPTPIQAV+WP
Sbjct: 85 SLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWP 144
Query: 125 YLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLI 184
YLL+GKDV+G+AETGSGKTFAFGVPAI++++ K ++VLVISPTRELASQIYDNLI
Sbjct: 145 YLLSGKDVVGVAETGSGKTFAFGVPAISHLMND-QKKRGIQVLVISPTRELASQIYDNLI 203
Query: 185 VLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDE 244
VLTD G++ CCVYGGVPKD+QR L++SQVVVATPGRLLDL++EGSVDLS VNYLVLDE
Sbjct: 204 VLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDE 263
Query: 245 ADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDEL 304
ADRMLEKGFEEDIK IIR+T ++ RQTLMFTATWPKEVRELAS+FM+ P+KVSIGN D+L
Sbjct: 264 ADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQL 323
Query: 305 SANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNG 364
+ANKRITQIVEVVDP YHSGP KN+KVLIFALYKKEA+RVERNLKYNG
Sbjct: 324 TANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNG 383
Query: 365 YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 424
Y+VAAIHGDLSQQQRTQALNEFK+GK NLLLATDVAARGLDIPNVKTVINLTFPLTVEDY
Sbjct: 384 YNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443
Query: 425 VHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSA 484
VHRIGRTGRAGQ GTAHTLFTEQEKHLAG LVNVLNGA QPVPE+L KFGTHTKKKEHSA
Sbjct: 444 VHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSA 503
Query: 485 YGAFFKDVDLSKKPKKITFD 504
YG+FFKDVDL+KKPKKITFD
Sbjct: 504 YGSFFKDVDLTKKPKKITFD 523
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 442 bits (1137), Expect = e-124
Identities = 237/439 (53%), Positives = 309/439 (69%), Gaps = 10/439 (2%)
Query: 72 DEFLKENEVTVSDPSGS-NIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGK 130
D ++K++ ++ +DP S N++P L F ++ ++++ + + +PTPIQA +WPYLLAG+
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATWPYLLAGR 203
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
DV+GIAETGSGKT AFG+PA+ + D S +VLV+SPTRELA Q Y+NL L
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGT 263
Query: 191 GLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLE 250
L++ VYGG PK +Q + + V++ TPGRLLDLI +GS+D S V YLVLDEADRML+
Sbjct: 264 NLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLD 323
Query: 251 KGFEEDIKKIIRQ----TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSA 306
GFE+DI+ II TR+ SRQT+ F+ATWP+ VR LA++F+ +PVK++IG+ DEL+A
Sbjct: 324 TGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGS-DELAA 382
Query: 307 NKRITQIVEVVDPFRXXXXXXXXXXXYH-SGPTKNDKVLIFALYKKEASRVERNLKYNGY 365
++ ITQIVE++D R H S K+DK+LIF LYKKEA+RVE L Y
Sbjct: 383 SQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLA-RKY 441
Query: 366 DVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYV 425
+V IHGD+SQ R QALN+FK+GKC +L+ATDVAARGLDIP V+ VIN+TFPLT+EDYV
Sbjct: 442 NVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYV 501
Query: 426 HRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSAY 485
HRIGRTGRA GTA T FT Q+K AG LVNVL A Q +PE L KFGT K K +AY
Sbjct: 502 HRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPK-LNAY 560
Query: 486 GAFFKDVDLSKKPKKITFD 504
G+ DV + K KI FD
Sbjct: 561 GSRVVDVPV-KAATKIVFD 578
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 392 bits (1007), Expect = e-109
Identities = 223/447 (49%), Positives = 287/447 (63%), Gaps = 16/447 (3%)
Query: 70 DIDEFLKENEVTVSDPSGSNIVPYL---DFSQVSFIDQIQKEISKFPKPTPIQAVSWPYL 126
D+ E E + V G Y F++ + + + F KP+PIQ+ +WP+L
Sbjct: 89 DLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFL 148
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAI------NNIVTSGDKSSSVKVLVISPTRELASQIY 180
L G+D+IGIA+TGSGKT AFG+PAI N + G K + LV+SPTRELA QI
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 181 DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNY 239
D L + CGL+S CVYGG K Q +R +V+ TPGRL DLIE + LS V++
Sbjct: 209 DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSF 268
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS-EPVKVSI 298
+VLDEADRML+ GFEE ++ I+ T RQ +MF+ATWP +V +LA FM P+KV I
Sbjct: 269 VVLDEADRMLDMGFEEPVRFILSNTNKV-RQMVMFSATWPLDVHKLAQEFMDPNPIKVII 327
Query: 299 GNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVER 358
G+ D L+AN + QI+EV+D YH ++ ++VL+FALYK EA R+ER
Sbjct: 328 GSVD-LAANHDVMQIIEVLDERARDQRLIALLEKYHK--SQKNRVLVFALYKVEAERLER 384
Query: 359 NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP 418
L+ G+ +IHG+ +Q +RT++L+ FK G C LL+ATDVAARGLDIP+V+ VIN TFP
Sbjct: 385 FLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFP 444
Query: 419 LTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTK 478
LT EDYVHRIGRTGRAG+ G AHT FT K LAG LVNVL AGQ VP +L KFGTH K
Sbjct: 445 LTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFGTHVK 504
Query: 479 KKEHSAYGAFFKDVDL-SKKPKKITFD 504
KKE YGA FK++ + K KITFD
Sbjct: 505 KKESKLYGAHFKEIAADAPKATKITFD 531
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 340 bits (871), Expect = 4e-93
Identities = 194/429 (45%), Positives = 266/429 (61%), Gaps = 19/429 (4%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
S S+I +F KENE+T+S G +I P F + F D + E+ F KPT IQ W
Sbjct: 88 SDSEIAQFRKENEMTIS---GHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGW 144
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNI-----VTSGDKSSSVKVLVISPTRELASQ 178
P L+G+D++GIA TGSGKT ++ +P I +I + GD VLV++PTRELA Q
Sbjct: 145 PMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPI---VLVLAPTRELAVQ 201
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHV 237
I + +R+ CVYGGVPK QQ DL R S++V+ATPGRL+D++E G +L V
Sbjct: 202 IQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRV 261
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVS 297
YLVLDEADRML+ GFE I+KI+ Q R RQTLM++ATWPKEV++LA+ ++++P++V
Sbjct: 262 TYLVLDEADRMLDMGFEPQIRKIVDQIRP-DRQTLMWSATWPKEVKQLAADYLNDPIQVQ 320
Query: 298 IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVE 357
+G+ ELSA+ ITQIVEVV F + K LIFA K+ +
Sbjct: 321 VGSL-ELSASHNITQIVEVVSDFEKRDRLNKYLET--ASQDNEYKTLIFASTKRMCDDIT 377
Query: 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
+ L+ +G+ AIHGD Q++R L EF+ G+ +++ATDVAARG+D+ + VIN
Sbjct: 378 KYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDM 437
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHT 477
P +EDYVHRIGRTGRAG GTA + FTEQ K L L++++ A Q +P EL K+ +
Sbjct: 438 PGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRS 497
Query: 478 KKKEHSAYG 486
H YG
Sbjct: 498 YGGGHPRYG 506
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 332 bits (851), Expect = 8e-91
Identities = 182/417 (43%), Positives = 257/417 (60%), Gaps = 12/417 (2%)
Query: 63 AASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEI--SKFPKPTPIQA 120
+A AS+ + + + +E+TVS G P + F F ++ +E+ + F PTPIQA
Sbjct: 129 SAPASELSPEAYSRRHEITVS--GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 121 VSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT-SGDKSSSVKVLVISPTRELASQI 179
SWP + G+D++ IA+TGSGKT + +P ++ D +LV+SPTRELA+QI
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVN 238
+ + + + C+YGG PK Q DL R + +VVATPGRL D++E + L ++
Sbjct: 247 QEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQIS 306
Query: 239 YLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI 298
YLVLDEADRML+ GFE I+KI+++ T RQTLM+TATWPK VR++A+ + P +V+I
Sbjct: 307 YLVLDEADRMLDMGFEPQIRKIVKEI-PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 299 GNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVER 358
GN DEL ANK ITQ +EVV P G KV+IF K+ ++ R
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG----SKVIIFCSTKRMCDQLTR 421
Query: 359 NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP 418
NL + AAIHGD SQ +R LN+F++G+ +L+ATDVAARGLD+ +++ V+N FP
Sbjct: 422 NLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFP 480
Query: 419 LTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGT 475
VEDYVHRIGRTGRAG G A T F +Q+ A L+ +L GA Q VP ++++ T
Sbjct: 481 NGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMAT 537
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 327 bits (837), Expect = 3e-89
Identities = 186/423 (43%), Positives = 261/423 (60%), Gaps = 21/423 (4%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQA 120
A+ + ++++E+ K E+TV G +I P F V F D + +E+ K F +PTPIQ+
Sbjct: 71 AAMTDTEVEEYRKLREITVE---GKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQS 127
Query: 121 VSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI-----VTSGDKSSSVKVLVISPTREL 175
WP + G+D+IGIAETGSGKT ++ +PAI ++ + GD VLV++PTREL
Sbjct: 128 QGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPI---VLVLAPTREL 184
Query: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDL 234
A QI + +++ C+YGGVPK Q DL++ ++V+ATPGRL+D++E + +L
Sbjct: 185 AVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNL 244
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPV 294
V YLVLDEADRML+ GF+ I+KI+ R RQTL ++ATWPKEV +L+ F+ P
Sbjct: 245 RRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP-DRQTLYWSATWPKEVEQLSKKFLYNPY 303
Query: 295 KVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEAS 354
KV IG+ D L AN+ I QIV+V+ + G ++L+F KK
Sbjct: 304 KVIIGSSD-LKANRAIRQIVDVISESQKYNKLVKLLEDIMDG----SRILVFLDTKKGCD 358
Query: 355 RVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVIN 414
++ R L+ +G+ +IHGD SQ +R L+EF++GK ++ ATDVAARGLD+ +VK VIN
Sbjct: 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVIN 418
Query: 415 LTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFG 474
FP ++EDYVHRIGRTGRAG GTA+T FT A L N+L AGQ V EL G
Sbjct: 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMG 478
Query: 475 THT 477
T
Sbjct: 479 RST 481
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 324 bits (830), Expect = 2e-88
Identities = 184/408 (45%), Positives = 253/408 (61%), Gaps = 14/408 (3%)
Query: 69 SDIDEFLKENEVTVSDPSGSNI-VPYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPY 125
S ++ + K++EVT + G NI PY+ F +I +E+ + FP PTPIQA +WP
Sbjct: 412 SPVEIYRKQHEVTTT---GENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPI 468
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIV-TSGDKSSSVKVLVISPTRELASQIYDNLI 184
L +D++ IA+TGSGKT + +PA + D + VL+++PTRELA+QI D +
Sbjct: 469 ALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEAL 528
Query: 185 VLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVLD 243
+ + C+YGG PK Q ++L R + +VVATPGRL D++E +D V+ LVLD
Sbjct: 529 RFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLD 588
Query: 244 EADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDE 303
EADRML+ GFE I+KI+ + RQTLM+TATWPKEVR++AS + PV+V+IG DE
Sbjct: 589 EADRMLDMGFEPQIRKIVNEI-PPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDE 647
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
L+ANK ITQ VEVV G KV+IF K+ + R++ +
Sbjct: 648 LAANKAITQYVEVVPQMEKERRLEQILRSQERG----SKVIIFCSTKRLCDHLARSVGRH 703
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
+ IHGD +Q +R LN+F++GK +L+ATDVAARGLDI +++ VIN FP VED
Sbjct: 704 -FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED 762
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
YVHRIGRTGRAG G A T FTEQ+ A L+ VL GA Q VP +++
Sbjct: 763 YVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVR 810
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 320 bits (821), Expect = 2e-87
Identities = 181/408 (44%), Positives = 253/408 (61%), Gaps = 10/408 (2%)
Query: 68 QSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEI-SKFPKPTPIQAVSWPYL 126
Q +ID+++ N+VT+ P +F++ QI + + KF KPT IQ++SWP
Sbjct: 106 QYEIDQWVSANQVTLEGRGVPR--PVFEFNEAPLPGQIHELLYGKFQKPTVIQSISWPIA 163
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--DKSSSVKVLVISPTRELASQIYDNLI 184
++G+D+I IA+TGSGKT AF +PA+ +I + VLV+ PTRELA Q+ + I
Sbjct: 164 MSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSI 223
Query: 185 VLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLD 243
+ GL+ C++GG K Q DL R +VVATPGRLLD ++ G+ ++ +YLVLD
Sbjct: 224 DFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLD 283
Query: 244 EADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDE 303
EADRML+ GFE IKKII Q R RQTLMF+ATWPKEVR LAS F + +++G+ E
Sbjct: 284 EADRMLDMGFEPQIKKIIGQIRP-DRQTLMFSATWPKEVRALASDFQKDAAFLNVGSL-E 341
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
L+AN ITQ+V++++ H K K +IF K++A + R ++ +
Sbjct: 342 LAANHNITQVVDILE--EHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRD 399
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
G+ IHGD +Q +R L EFKAGK ++LATDVAARGLD+ ++K VIN +P ED
Sbjct: 400 GWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSED 459
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
YVHRIGRTGR+ + GTA+T FT A L+ VL+ A Q VP+ L+
Sbjct: 460 YVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALR 507
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 320 bits (821), Expect = 2e-87
Identities = 179/407 (43%), Positives = 248/407 (59%), Gaps = 13/407 (3%)
Query: 70 DIDEFLKENEVTVSDPSGSNI-VPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYL 126
+ + FL NE+T+ G + P ++F + F D + EI K F KPT IQA WP
Sbjct: 128 ETETFLTSNEITIK---GDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIA 184
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--DKSSSVKVLVISPTRELASQIYDNLI 184
++G+D++G+A+TGSGKT A+ +PA+ +I ++ LV++PTRELA QI I
Sbjct: 185 MSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAI 244
Query: 185 VLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLD 243
+R+ C++GG PK QQ DL R ++V+ATPGRL+D +E G+ L YLVLD
Sbjct: 245 EFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLD 304
Query: 244 EADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDE 303
EADRML+ GFE I+KI++Q R RQ LM++ATWPKEVR+LA F++ ++V+IG+
Sbjct: 305 EADRMLDMGFEPQIRKIMQQIRP-DRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLS- 362
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
LSAN I QIV+V D + K +IF KK + RN+
Sbjct: 363 LSANHNILQIVDVCDENEKLMKLIKLLTDISA--ENETKTIIFVETKKRVDEITRNISRQ 420
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
G+ AIHGD SQQ+R L+ F+ G+ ++L+ATDVAARGLD+ +VK VIN +P ED
Sbjct: 421 GWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSED 480
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
YVHRIGRTGR+ GTA+TLFT + A L+ VL A Q + +L
Sbjct: 481 YVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKL 527
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 320 bits (820), Expect = 3e-87
Identities = 183/411 (44%), Positives = 251/411 (60%), Gaps = 17/411 (4%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
++ D+ + E +++V G ++ P F +F D I + I+K F +PTPIQA W
Sbjct: 113 TEQDVAMYRTERDISVE---GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGW 169
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTS---GDKSSSVKVLVISPTRELASQIY 180
P L G+D+IGIAETGSGKT A+ +PA+ ++ G + VL+++PTRELA QI
Sbjct: 170 PMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI-VLILAPTRELAVQIQ 228
Query: 181 DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNY 239
+ G+RS C+YGG PK Q DLRR ++V+ATPGRL+D++E +L V Y
Sbjct: 229 EESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTY 288
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIG 299
LVLDEADRML+ GFE I+KI+ Q R RQTL+++ATWP+EV LA F+ +P K IG
Sbjct: 289 LVLDEADRMLDMGFEPQIRKIVSQIRP-DRQTLLWSATWPREVETLARQFLRDPYKAIIG 347
Query: 300 NRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERN 359
+ D L AN+ I Q++E+V G K+LIF K+ +V R
Sbjct: 348 STD-LKANQSINQVIEIVPTPEKYNRLLTLLKQLMDG----SKILIFVETKRGCDQVTRQ 402
Query: 360 LKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPL 419
L+ +G+ AIHGD +Q +R + L EFK+G+ ++ ATDVAARGLD+ ++K V+N FP
Sbjct: 403 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPN 462
Query: 420 TVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
T+EDY+HRIGRTGRAG G A T FT A LV +L AGQ VP L
Sbjct: 463 TLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTL 513
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 315 bits (807), Expect = 1e-85
Identities = 166/366 (45%), Positives = 231/366 (62%), Gaps = 8/366 (2%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT-SGDKSSSVKVLVIS 170
F P+PIQA SWP + +D++ IA+TGSGKT + +P ++ D +LV+S
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLS 308
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE 229
PTRELA+QI + + + C+YGG PK Q +++ R +VVATPGRL D++E
Sbjct: 309 PTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEM 368
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+ L V+YLVLDEADRML+ GFE I+KI+ + T RQTLM+TATWPKEVR++A+
Sbjct: 369 KRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV-PTKRQTLMYTATWPKEVRKIAADL 427
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
+ P +V+IGN DEL ANK ITQ +EV+ P G K++IF
Sbjct: 428 LVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPG----SKIIIFCST 483
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
K+ ++ RNL + AAIHGD SQ +R LN+F++G+ +L+ATDVAARGLD+ ++
Sbjct: 484 KRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI 542
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEE 469
+ V+N FP VEDYVHRIGRTGRAG G A+T F +Q+ A L+ +L GA Q VP +
Sbjct: 543 RVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602
Query: 470 LKKFGT 475
+++ T
Sbjct: 603 VREMAT 608
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 313 bits (801), Expect = 5e-85
Identities = 176/420 (41%), Positives = 248/420 (58%), Gaps = 10/420 (2%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAV 121
A+ S ++ + +E E+TV G P DFS+V D + KEI + + PT IQA
Sbjct: 112 ANRSPYEVQRYREEQEITVR---GQVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQ 168
Query: 122 SWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--DKSSSVKVLVISPTRELASQI 179
WP ++G + +GIA+TGSGKT + +PAI +I + LV++PTRELA QI
Sbjct: 169 GWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQI 228
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVN 238
+ +R+ CV+GG PK Q DL+R ++V+ATPGRL+D + GS +L
Sbjct: 229 QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCT 288
Query: 239 YLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI 298
YLVLDEADRML+ GFE I+KI+ Q R RQTLM++ATWPKEV++LA F+ ++++I
Sbjct: 289 YLVLDEADRMLDMGFEPQIRKIVSQIRP-DRQTLMWSATWPKEVKQLAEDFLGNYIQINI 347
Query: 299 GNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVER 358
G+ ELSAN I Q+V+V D F + K++IF K+ + R
Sbjct: 348 GSL-ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVR 406
Query: 359 NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP 418
++ G AIHGD SQ +R L EF++GK N+L+ATDVAARGLD+ +K VIN +P
Sbjct: 407 FIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYP 466
Query: 419 LTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTK 478
EDY+HRIGRTGR+ GT+ FT+ A ALV+VL A Q + L+ +++
Sbjct: 467 QNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSR 526
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 311 bits (798), Expect = 1e-84
Identities = 178/420 (42%), Positives = 260/420 (61%), Gaps = 19/420 (4%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
S +++ E+ KE E+ V G N+ P F + F + + KE+ + F PTPIQ +W
Sbjct: 97 SDAEVTEYRKEKEIVVH---GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAW 153
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNI-----VTSGDKSSSVKVLVISPTRELASQ 178
P ++G+D++GI+ TGSGKT ++ +PAI +I ++ GD VLV++PTRELA Q
Sbjct: 154 PMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI---VLVLAPTRELAVQ 210
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHV 237
I + +R+ CVYGGVP+ Q DL R ++ +ATPGRLLD+++ +L V
Sbjct: 211 IQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRV 270
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVS 297
YLVLDEADRML+ GFE I+KI+ Q R RQT+MF+ATWPKEV+ LA ++++ ++V+
Sbjct: 271 TYLVLDEADRMLDMGFEPQIRKIVDQIRP-DRQTVMFSATWPKEVQRLARDYLNDYIQVT 329
Query: 298 IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVE 357
+G+ D L+A+ I QIVEVVD +++KVLIF K+ A +
Sbjct: 330 VGSLD-LAASHNIKQIVEVVD--NADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDIT 386
Query: 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
R L+ +G+ AIHGD +Q +R LNEF+ GK +++ATDVA+RG+D+ + V N F
Sbjct: 387 RFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDF 446
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHT 477
P EDYVHRIGRTGRAG GTA+T FT A LV++L+ A Q + +L++ ++
Sbjct: 447 PGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYS 506
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 303 bits (777), Expect = 3e-82
Identities = 174/413 (42%), Positives = 247/413 (59%), Gaps = 13/413 (3%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQA 120
A + +++ + + E+TV G N P L+F + +F + I++ F +PT IQA
Sbjct: 66 ARRTAQEVETYRRSKEITVR---GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQA 122
Query: 121 VSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--DKSSSVKVLVISPTRELASQ 178
WP L+G D++G+A+TGSGKT ++ +PAI +I ++ LV++PTRELA Q
Sbjct: 123 QGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ 182
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHV 237
+ AC L+S C+YGG PK Q DL R ++ +ATPGRL+D +E G +L
Sbjct: 183 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRT 242
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVS 297
YLVLDEADRML+ GFE I+KI+ Q R RQTLM++ATWPKEVR+LA F+ + + ++
Sbjct: 243 TYLVLDEADRMLDMGFEPQIRKIVDQIRP-DRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 298 IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVE 357
IG ELSAN I QIV+V S K +K ++F K+ +
Sbjct: 302 IGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS--EKENKTIVFVETKRRCDELT 358
Query: 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
R ++ +G+ IHGD SQQ+R LNEFK GK +L+ATDVA+RGLD+ +VK VIN +
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
P + EDY+HRIGRT R+ + GTA+T FT L++VL A Q + +L
Sbjct: 419 PNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKL 471
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 294 bits (752), Expect = 2e-79
Identities = 177/413 (42%), Positives = 251/413 (59%), Gaps = 23/413 (5%)
Query: 69 SDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPY 125
S++ F K NE+ V G+N+ P F + F ++ + + F +PT IQ WP
Sbjct: 64 SEVSSFRKTNEMIVK---GTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPM 120
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD--KSSSVKVLVISPTRELASQIYDNL 183
L+G+D++GIA+TGSGKT +F +PA+ + + VLV++PTREL QI
Sbjct: 121 ALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKK-- 178
Query: 184 IVLTDACG---LRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNY 239
V+ + CG LRS VYGG Q L ++VV+ATPGRL+DL ++G LS V +
Sbjct: 179 -VVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTF 237
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIG 299
LVLDEADRML+ GFE ++KII +T + +RQTLM++ATWP+EVR LA S+M+E ++V +G
Sbjct: 238 LVLDEADRMLDMGFEPQLRKIIPKTNA-NRQTLMWSATWPREVRGLAESYMNEYIQVVVG 296
Query: 300 NRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERN 359
N +EL N +I QIVEV + K DKV++F K+ +E
Sbjct: 297 N-EELKTNSKIKQIVEVCSGREKEDKLIGVLDNF-----KGDKVIVFCNMKRTCDDLEYV 350
Query: 360 LKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPL 419
L +GY AA+HGD SQ R + L++F++G+ +L+AT+VA RGLD+ +VK VIN FP
Sbjct: 351 LNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPG 410
Query: 420 TVEDYVHRIGRTGRAG-QYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
+ EDYVHRIGRT R + G +HT FT +K A L+ +L A Q VP +L+
Sbjct: 411 SCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLE 463
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 294 bits (752), Expect = 2e-79
Identities = 171/408 (41%), Positives = 240/408 (57%), Gaps = 14/408 (3%)
Query: 70 DIDEFLKENEVTVSDPSGSNIVP--YLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPY 125
++DE ++ E+TV G ++ P F +F + + F +PTPIQ +P
Sbjct: 69 EVDELRRKKEITVR---GGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--DKSSSVKVLVISPTRELASQIYDNL 183
L+G+D++GIA+TGSGKT A+ +PAI +I ++ LV++PTRELA Q+
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVA 185
Query: 184 IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
L+S C+YGG PK Q DL R ++ +ATPGRL+D +E G +L YLVL
Sbjct: 186 DDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVL 245
Query: 243 DEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRD 302
DEADRML+ GFE I+KI+ Q R RQTLM++ATWPKEVR+LA F+ + ++++GN
Sbjct: 246 DEADRMLDMGFEPQIRKIVDQIRP-DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL- 303
Query: 303 ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKY 362
ELSAN I QIV+V K +K +IF K+ + R ++
Sbjct: 304 ELSANHNILQIVDVC--MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRR 361
Query: 363 NGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVE 422
+G+ IHGD SQ +R LNEF++GK +L+ATDVA+RGLD+ +VK VIN +P + E
Sbjct: 362 DGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSE 421
Query: 423 DYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
DYVHRIGRT R+ GTA+T FT A L+ VL A Q + +L
Sbjct: 422 DYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKL 469
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 290 bits (742), Expect = 3e-78
Identities = 173/419 (41%), Positives = 256/419 (60%), Gaps = 24/419 (5%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
S+ + E +E E+TVS G+ + P + F + S + +E+ + F KPT IQ+ W
Sbjct: 212 SEQQVAEIRRELEITVS---GNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGW 268
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK-----VLVISPTRELASQ 178
P L+G+D++GIA+TGSGKT A+ +PAI +I G++ ++ LV++PTRELA Q
Sbjct: 269 PIALSGRDLVGIAQTGSGKTLAYMLPAIVHI---GNQPPIIRGEGPIALVLAPTRELAQQ 325
Query: 179 IYDNLIVLTDACG--LRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLS 235
I + C +R C++GG K Q DL R +V++ATPGRL+D +E + +L
Sbjct: 326 IQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQ 385
Query: 236 HVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVK 295
YLVLDEADRML+ GFE I+KII Q R RQ +M++ATWPKEV+ LA F+++ ++
Sbjct: 386 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRP-DRQVVMWSATWPKEVQALAGDFLNDYIQ 444
Query: 296 VSIGNRDELSANKRITQIVEVVD----PFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
++IG+ + LSAN I QIVE+ P R +SG N K+++F K
Sbjct: 445 INIGSMN-LSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGN-KIIVFVETKI 502
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+ + + ++ GY+ +IHGD +Q +R L +F+ GK N+L+ATDVA+RGLD+ +++
Sbjct: 503 KVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQY 562
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN +P + E+YVHRIGRTGR Q GTA+T FT A L++VL AGQ + L
Sbjct: 563 VINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQAL 621
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 283 bits (724), Expect = 4e-76
Identities = 174/445 (39%), Positives = 262/445 (58%), Gaps = 26/445 (5%)
Query: 64 ASASQSDIDEFLKEN-EVTVS---DPSGSNIVPYLD-----FSQ--VSFIDQIQKEISK- 111
A+ ++S+I+ +EN ++TVS +P P + F Q + D ++ EI+K
Sbjct: 243 ANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLE-EITKM 301
Query: 112 -FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV---TSGDKSSSVKVL 167
F KP+PIQ+ +WP LL G D+IGIA+TG+GKT AF +P + + T VL
Sbjct: 302 GFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVL 361
Query: 168 VISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDL 226
V++PTRELA QI + + G+++ CVYGG ++ Q DL R +++++ TPGRL DL
Sbjct: 362 VLAPTRELALQI-EMEVKKYSFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLNDL 420
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELA 286
I +D+S + YLVLDEADRML+ GFE I+K++ R RQT+M +ATWP VR LA
Sbjct: 421 IMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRP-DRQTIMTSATWPPGVRRLA 479
Query: 287 SSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIF 346
S+M P++V +G+ D L+A + QI+++++ + + DK++IF
Sbjct: 480 QSYMKNPIQVCVGSLD-LAATHSVKQIIKLMED---DMDKFNTITSFVKNMSSTDKIIIF 535
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
K A + L +G+ IHG+ Q R QA+ + K+G +L+ATDVA+RGLDI
Sbjct: 536 CGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDI 595
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPV 466
++ VIN FP +E+YVHR+GRTGRAG+ GT+ + FT ++ +A L+ +L A Q V
Sbjct: 596 EDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEV 655
Query: 467 PEELKKFGTHTK--KKEHSAYGAFF 489
P+EL K K + +A G F
Sbjct: 656 PDELHNMARRFKAMKDKRAAEGGGF 680
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 276 bits (707), Expect = 4e-74
Identities = 169/440 (38%), Positives = 251/440 (56%), Gaps = 26/440 (5%)
Query: 60 ESFAASA-SQSDIDEFLKEN-EVTVSDPSGSNIVPYLDFSQVSFID------QIQKEISK 111
ES A SA S+ + D + KEN +T D P + +F D ++ + I K
Sbjct: 201 ESTATSAMSKVEADSWRKENFNITWDDLKDGEKRP-IPNPTCTFDDAFQCYPEVMENIKK 259
Query: 112 --FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD---KSSSVKV 166
F KPTPIQ+ +WP +L G D+IG+A+TG+GKT + +P ++V + + +
Sbjct: 260 AGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGM 319
Query: 167 LVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLD 225
LV++PTRELA Q+ + GLRS CVYGG +D+Q E+L++ +++ATPGRL D
Sbjct: 320 LVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND 378
Query: 226 LIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
L V+L ++ YLVLDEAD+ML+ GFE I KI+ R RQT+M +ATWP V L
Sbjct: 379 LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRP-DRQTVMTSATWPHSVHRL 437
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
A S++ EP+ V +G D ++ + I+ + + + + DKV++
Sbjct: 438 AQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQT-----FLQSMSSTDKVIV 492
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F K A + +L V ++HGD Q+ R +AL FK GK +L+ATD+A+RGLD
Sbjct: 493 FVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLD 552
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
+ +V V N FP +E+YVHRIGRTGRAG+ G + T T + +A L+N+L A Q
Sbjct: 553 VHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQS 612
Query: 466 VPEEL----KKFGTHTKKKE 481
+PEEL ++F H +K+E
Sbjct: 613 IPEELVSMAERFEAHQRKRE 632
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 275 bits (704), Expect = 9e-74
Identities = 165/385 (42%), Positives = 233/385 (59%), Gaps = 12/385 (3%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P F F QI I K + KPT IQ + P +L+G+DVIGIA+TGSGKT AF +P
Sbjct: 226 PVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLP 285
Query: 150 AINNIVTSGD--KSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR 207
I +I+ + + ++ +PTRELA QI+ + A GLR VYGG+ K +Q
Sbjct: 286 MIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345
Query: 208 EDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS 266
++L+ ++VVATPGRL+D+++ ++ + +YLVLDEADRM + GFE ++ I+ Q R
Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 267 TSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXX 326
RQTL+F+AT P +V +LA +S+P++V++G AN+ ITQ+V V+
Sbjct: 406 -DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVG--MANEDITQVVNVIP---SDAEK 459
Query: 327 XXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEF 386
G VL+FA K +E L N + VAA+HGD Q R + L +F
Sbjct: 460 LPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKF 519
Query: 387 KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG-QYGTAHTLFT 445
K+G ++L+ATDVAARGLDI ++KTV+N ++ +VHRIGRTGRAG + G A+TL T
Sbjct: 520 KSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVT 579
Query: 446 EQEKHLAGALVNVLNGAGQPVPEEL 470
++E AG LVN L AGQ VP EL
Sbjct: 580 QREARFAGELVNSLVAAGQNVPPEL 604
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 271 bits (694), Expect = 1e-72
Identities = 170/425 (40%), Positives = 233/425 (54%), Gaps = 26/425 (6%)
Query: 84 DPSGSNIV-PYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETGS 140
D SG ++ P LDFS + + + I + F KPTP+Q S P + G+D++ A+TGS
Sbjct: 143 DASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGS 202
Query: 141 GKTFAFGVPAINNIVTSG-----DKSSSV-------KVLVISPTRELASQIYDNLIVLTD 188
GKT F P + SG +K+ S LV++PTRELA+QI++ T
Sbjct: 203 GKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTY 262
Query: 189 ACGLRSCCVYGGVP-KDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADR 247
+R C VYGG P +Q RE R ++VATPGRL DL+E G V L+++ YLVLDEADR
Sbjct: 263 RSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADR 322
Query: 248 MLEKGFEEDIKKIIRQTRSTS---RQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDEL 304
ML+ GFE I+ I+ + S RQTLMF+AT+P +++ LA F+ + +S+G
Sbjct: 323 MLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGST 382
Query: 305 SANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNG 364
S N ITQ + VD H G T LIF K+ A ++ L
Sbjct: 383 SEN--ITQRILYVDDMDKKSALLDLLSAEHKGLT-----LIFVETKRMADQLTDFLIMQN 435
Query: 365 YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 424
+ AIHGD +Q +R +AL+ FKA ++L+AT VAARGLDIPNV VIN P ++DY
Sbjct: 436 FKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDY 495
Query: 425 VHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHSA 484
VHRIGRTGRAG G A + F +++ L+ +LN A Q VP L + +
Sbjct: 496 VHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQNSRGGRTR 555
Query: 485 YGAFF 489
G F
Sbjct: 556 GGGGF 560
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 271 bits (693), Expect = 2e-72
Identities = 165/429 (38%), Positives = 241/429 (55%), Gaps = 19/429 (4%)
Query: 63 AASASQSDIDEFLKENEVTVSDPSGSNIVPYLD-FSQVSFIDQIQKEIS--KFPKPTPIQ 119
A + ++ + F ++ + + SG N+ P ++ F+++ + + I K+ KPTP+Q
Sbjct: 115 AVNEQENTVINFEAYEDIPI-ETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQ 173
Query: 120 AVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTS-------GDKSSSVKVLVISPT 172
+ P L AG+D++ A+TGSGKT AF P I+ I+ G + +++SPT
Sbjct: 174 RNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPT 233
Query: 173 RELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGS 231
RELA QI+D + G++ YGG P +QQ +L R ++VATPGRL DL+E G
Sbjct: 234 RELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGR 293
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS---RQTLMFTATWPKEVRELASS 288
V L V +L LDEADRML+ GFE I+KI++Q RQT++F+AT+P+E++ LAS
Sbjct: 294 VSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASD 353
Query: 289 FMSEPVKVSIGNRDELSANKRITQIVEVVDPF--RXXXXXXXXXXXYHSGPTKNDKVLIF 346
F+S + +++G S+ I Q VE V R + K L+F
Sbjct: 354 FLSNYIFLAVGRVG--SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVF 411
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
KK A +E L NG+ IHGD SQQ+R AL FK G+ +L+ATDVAARGLDI
Sbjct: 412 VETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDI 471
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPV 466
P+V V+N P ++DYVHRIGRTGRAG G A F + +A L ++ A Q V
Sbjct: 472 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEV 531
Query: 467 PEELKKFGT 475
P+ L ++ +
Sbjct: 532 PDWLTRYAS 540
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 269 bits (687), Expect = 8e-72
Identities = 161/410 (39%), Positives = 239/410 (58%), Gaps = 18/410 (4%)
Query: 84 DPSGSNIVPYLD-FSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAGKDVIGIAETGS 140
+ SG N+ P ++ F+++ + + I K+ KPTP+Q + P LL G+D++ A+TGS
Sbjct: 148 ETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
Query: 141 GKTFAFGVPAINNIVTS-------GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLR 193
GKT AF P I+ I+ G ++ +++SPTRELASQI+D + G++
Sbjct: 208 GKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVK 267
Query: 194 SCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKG 252
YGG P +QQ +L R ++VATPGRL DL+E V + + +L LDEADRML+ G
Sbjct: 268 VVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMG 327
Query: 253 FEEDIKKIIRQTRSTSR---QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKR 309
FE I+KI+ Q R QTL+F+AT+P+E++ LA+ F++ + +++G S+
Sbjct: 328 FEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG--SSTDL 385
Query: 310 ITQIVE-VVDPFRXXXXXXXXXXXYHSG-PTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
I Q VE V+D + +G K L+F K+ A +E L NG+
Sbjct: 386 IVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPA 445
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 427
+IHGD +QQ+R AL FK+G+ +L+ATDVAARGLDIP+V V+N P ++DYVHR
Sbjct: 446 TSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 428 IGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHT 477
IGRTGRAG+ G A F + LA L ++ A Q VPE L ++ + +
Sbjct: 506 IGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRS 555
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 267 bits (682), Expect = 3e-71
Identities = 161/413 (38%), Positives = 239/413 (56%), Gaps = 15/413 (3%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAV 121
A+ + E + V V+ PS P F F +Q+ K + K + +PTPIQA
Sbjct: 241 AALDDEQVRELRRTLGVKVTGPSPPK--PVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQ 298
Query: 122 SWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD-KSSSVKV-LVISPTRELASQI 179
+ P L+G+D+IGIA+TGSGKT AF P + +++ K + L+++PTREL+ QI
Sbjct: 299 AVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQI 358
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVN 238
Y+ L C YGG K +Q + L + ++++VATPGR++D+++ + +L V
Sbjct: 359 YNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVT 418
Query: 239 YLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI 298
+LVLDEADRM GFE ++ I R RQ LMF+AT+ K + LA +S+PV++
Sbjct: 419 FLVLDEADRMFHMGFEPQVRSICNHVRP-DRQCLMFSATFKKRIERLARDVLSDPVRIVQ 477
Query: 299 GNRDELSANKRITQIVEVV-DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVE 357
G+ +E AN+ ITQ V V +P + + S VLIF K +A V
Sbjct: 478 GDLNE--ANQDITQSVYVFPNPLQKWNWLLCHLVKFLS----EGSVLIFVTKKVDAETVS 531
Query: 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
NL Y+ +HGD+ Q R + + +FK +C++L+ATDVAARGLDIP+++ V+N
Sbjct: 532 NNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDT 591
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
+E + HRIGRTGRAG+ G A+TL T+++K AG LV L GA Q VP++L
Sbjct: 592 ARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDL 644
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 266 bits (679), Expect = 7e-71
Identities = 171/446 (38%), Positives = 251/446 (55%), Gaps = 39/446 (8%)
Query: 74 FLKENEVTVSDPSGSNIVPYLD-FSQVSFIDQIQK--EISKFPKPTPIQAVSWPYLLAGK 130
F K +++ V + +GSN P+++ FS + + I E++++ +PTP+Q + P + +
Sbjct: 158 FEKYDDIPV-EATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKR 216
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV---------------LVISPTREL 175
D++ A+TGSGKT AF +P ++ I T G + V LV++PTREL
Sbjct: 217 DLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTREL 276
Query: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDL 234
A QIY+ + +R C VYGG QQ DL R ++VATPGRL+D++E G + L
Sbjct: 277 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 336
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS---RQTLMFTATWPKEVRELASSFMS 291
YLVLDEADRML+ GFE I++I+ Q R T+MF+AT+PKE++ LA F+
Sbjct: 337 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD 396
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKV-LIFALYK 350
E + +++G S N ITQ V V+ G T +D + L+F K
Sbjct: 397 EYIFLAVGRVGSTSEN--ITQKVVWVEDLDKRSFLLDIL-----GATGSDSLTLVFVETK 449
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
K A +E L + GY +IHGD SQ+ R +AL++F++GK +L+AT VAARGLDI NV+
Sbjct: 450 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVR 509
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P +E+YVHRIGRTGR G G A + F E+ ++ L+++L A Q VP L
Sbjct: 510 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWL 569
Query: 471 K--------KFGTHTKKKEHSAYGAF 488
+ K G+ + K + G F
Sbjct: 570 ENMAYEHHYKGGSRGRSKSNRFSGGF 595
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 265 bits (676), Expect = 2e-70
Identities = 156/397 (39%), Positives = 233/397 (58%), Gaps = 37/397 (9%)
Query: 92 PYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P F+ F +Q+ +I S++ +PTPIQ P L+G+D+IGIA+TGSGKT AF P
Sbjct: 132 PGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWP 191
Query: 150 AINNIVTSGD--KSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR 207
+ +I+ + +++ PTREL QI+ A LRS VYGG +Q
Sbjct: 192 MLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 251
Query: 208 EDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS 266
+ L+ +++VV TPGRL+D +++ + +L V+YLV DEADRM + GFE ++ I R
Sbjct: 252 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP 311
Query: 267 TSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXX 326
RQTL+F+AT+ K++ +LA + +P++V G+ E AN+ +TQIVE++
Sbjct: 312 -DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQIVEIL--------- 359
Query: 327 XXXXXXYHSGPTK-------------NDKVLIFALYKKEASRVERNLKYNGYDVAAIHGD 373
HSGP+K + VL+F K A + NLK G+++ +HGD
Sbjct: 360 -------HSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGD 412
Query: 374 LSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 433
+ Q +R + +++FK +L+ATDVAARGLDIP++KTVIN ++ + HRIGRTGR
Sbjct: 413 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 472
Query: 434 AGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
AG+ G A+TL T ++ + AG LV L GA Q V +EL
Sbjct: 473 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKEL 509
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 263 bits (673), Expect = 3e-70
Identities = 161/415 (38%), Positives = 236/415 (56%), Gaps = 24/415 (5%)
Query: 74 FLKENEVTVSDPSGSNIVPYL-DFSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAGK 130
F K ++ V + +G N+ P + F V + I+ ++ ++ KPTP+Q + P ++ G+
Sbjct: 275 FDKYEDIPV-EATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGR 333
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV------------LVISPTRELASQ 178
D++ A+TGSGKT AF VP +N + G LV++PTRELA+Q
Sbjct: 334 DLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQ 393
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHV 237
I++ +R +YGG +Q +L R ++VATPGRL D+I G V L ++
Sbjct: 394 IFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENI 453
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTR---STSRQTLMFTATWPKEVRELASSFMSEPV 294
+LVLDEADRML+ GFE I++I+ Q + RQTLMF+AT+PK+++ELAS F+S +
Sbjct: 454 RFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYI 513
Query: 295 KVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGP--TKNDKVLIFALYKKE 352
+++G S N ITQ + V GP TK+ LIF KK
Sbjct: 514 FLAVGRVGSTSEN--ITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKG 571
Query: 353 ASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTV 412
A +E L + V +IHGD +Q++R +AL F++G C +L+AT VAARGLDIP+VK V
Sbjct: 572 ADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHV 631
Query: 413 INLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
IN P VE+YVHRIGRTGR G G A + F E+ +++ L+ +L Q +P
Sbjct: 632 INFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIP 686
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 260 bits (665), Expect = 3e-69
Identities = 161/422 (38%), Positives = 235/422 (55%), Gaps = 30/422 (7%)
Query: 84 DPSGSNIVPYLD-FSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAGKDVIGIAETGS 140
+ SG ++ P ++ F+ + D + I K+ +PTP+Q + P LLA +D++ A+TGS
Sbjct: 140 ETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGS 199
Query: 141 GKTFAFGVPAINNIVTS-------GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLR 193
GKT AF P I+ I+ G ++ +++SPTRELA QI+D + G++
Sbjct: 200 GKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVK 259
Query: 194 SCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKG 252
YGG P QQ +L R ++VATPGRL DL+E V + + +L LDEADRML+ G
Sbjct: 260 VVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMG 319
Query: 253 FEEDIKKIIRQTRSTSR---QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKR 309
FE I+KI+ Q R QT++F+AT+P +++ LA+ FMS + +++G S+
Sbjct: 320 FEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG--SSTDL 377
Query: 310 ITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAA 369
ITQ VE V + H+ DK K+ A +E L N + +
Sbjct: 378 ITQRVEFV---QESDKRSHLMDLLHAQRETQDKT------KRGADTLENWLCMNEFPATS 428
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
IHGD +QQ+R AL FK G+ +L+ATDVAARGLDIP+V V+N P ++DYVHRIG
Sbjct: 429 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 488
Query: 430 RTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHT-----KKKEHSA 484
RTGRAG+ G A F E LA +L ++ A Q VPE L ++ + KK+
Sbjct: 489 RTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASRASFGGGKKRSGGR 548
Query: 485 YG 486
+G
Sbjct: 549 FG 550
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 260 bits (664), Expect = 4e-69
Identities = 163/420 (38%), Positives = 241/420 (56%), Gaps = 29/420 (6%)
Query: 74 FLKENEVTVSDPSGSNIVPYLD-FSQVSFIDQIQK--EISKFPKPTPIQAVSWPYLLAGK 130
F K +++ V + +G+N P+++ FS V + I E++++ +PTP+Q + P + +
Sbjct: 160 FEKYDDIPV-EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR 218
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV---------------LVISPTREL 175
D++ A+TGSGKT AF +P ++ I + G + + LV++PTREL
Sbjct: 219 DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 278
Query: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDL 234
A QIY+ + +R C VYGG QQ DL R ++VATPGRL+D++E G + L
Sbjct: 279 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 338
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS---RQTLMFTATWPKEVRELASSFMS 291
YLVLDEADRML+ GFE I++I+ Q R T+MF+AT+PKE++ LA F+
Sbjct: 339 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD 398
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
E + +++G S N ITQ V V+ + K+ L+F KK
Sbjct: 399 EYIFLAVGRVGSTSEN--ITQKVVWVEE----SDKRSFLLDLLNATGKDSLTLVFVETKK 452
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
A +E L + GY +IHGD SQ+ R +AL++F++GK +L+AT VAARGLDI NVK
Sbjct: 453 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 512
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
VIN P +E+YVHRIGRTGR G G A + F E+ ++ L+++L A Q VP L+
Sbjct: 513 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLE 572
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 255 bits (652), Expect = 9e-68
Identities = 153/380 (40%), Positives = 214/380 (56%), Gaps = 23/380 (6%)
Query: 108 EISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG--------- 158
++++F KPTP+Q S P + G+D++ A+TGSGKT F P ++ +G
Sbjct: 158 KLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217
Query: 159 ---DKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-Q 214
+ + ++++PTRELA+QI+D T +++C VYGG P Q ++ R
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCD 277
Query: 215 VVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST---SRQT 271
++VATPGRL DL+E G + L++V YLVLDEADRML+ GFE I+ I+ T RQT
Sbjct: 278 LLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQT 337
Query: 272 LMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXX 331
LMF+AT+P +++ LA F+S+ + +S+G S N ITQ V V+
Sbjct: 338 LMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSEN--ITQKVLYVENQDKKSALLDLLS 395
Query: 332 XYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKC 391
G T LIF K+ A ++ L + AIHGD +Q +R +AL F++G
Sbjct: 396 ASTDGLT-----LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAA 450
Query: 392 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
LL+AT VAARGLDIPNV VIN P V+DYVHRIGRTGRAG G A F + ++
Sbjct: 451 TLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNI 510
Query: 452 AGALVNVLNGAGQPVPEELK 471
L +L A Q VP LK
Sbjct: 511 VKGLHEILTEANQEVPSFLK 530
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 253 bits (647), Expect = 4e-67
Identities = 153/427 (35%), Positives = 241/427 (55%), Gaps = 18/427 (4%)
Query: 64 ASASQSDIDEFLKENE-VTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQA 120
A SQ +++ F E E +TV P + Q +I + K + KPTPIQ
Sbjct: 343 AKMSQEEVNVFRLEMEGITVKGKGCPK--PIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 121 VSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT--SGDKSSSVKVLVISPTRELASQ 178
+ P +++G+D+IGIA+TGSGKT AF +P +I+ S ++ ++++PTRELA Q
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGS---VDL 234
I + GLR CVYGG +Q +L+R ++++V TPGR++D++ S +L
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNL 520
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPV 294
V Y+VLDEADRM + GFE + +I+ R RQT+MF+AT+P+ + LA +S+P+
Sbjct: 521 RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP-DRQTVMFSATFPRAMEALARRILSKPI 579
Query: 295 KVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEAS 354
+V +G R + ++ + Q V V++ + Y ++ V+IF ++ A
Sbjct: 580 EVQVGGRSVVCSD--VEQQVIVIEEEKKFLKLLELLGHYQ----ESGSVIIFVDKQEHAD 633
Query: 355 RVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVIN 414
+ ++L Y ++HG + Q R +N+FK G C LL+AT VAARGLD+ ++ V+N
Sbjct: 634 GLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVN 693
Query: 415 LTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFG 474
+ P EDYVHR GRTGRAG G A+T TE + AG ++ L +G VP +L+K
Sbjct: 694 YSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLW 753
Query: 475 THTKKKE 481
+ K ++
Sbjct: 754 SDFKDQQ 760
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 252 bits (644), Expect = 8e-67
Identities = 152/416 (36%), Positives = 239/416 (56%), Gaps = 23/416 (5%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWP 124
+Q +++ + KE E+ V + + + Q +I + K + KP PIQ + P
Sbjct: 504 TQEEVNTYRKELELKVHGKDVPRPIKF--WHQTGLTSKILDTMKKLNYEKPMPIQTQALP 561
Query: 125 YLLAGKDVIGIAETGSGKTFAFGVPAINNI-----VTSGDKSSSVKVLVISPTRELASQI 179
+++G+D IG+A+TGSGKT F +P + +I V +GD LV++PTREL QI
Sbjct: 562 IIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIG---LVMAPTRELVQQI 618
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGS---VDLS 235
+ ++ + G+R VYGG QQ +L+R +++VV TPGR++D++ S +L
Sbjct: 619 HSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLR 678
Query: 236 HVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVK 295
V +LV+DEADRM + GFE I +II+ R RQT++F+AT+P++V LA +++PV+
Sbjct: 679 RVTFLVMDEADRMFDMGFEPQITRIIQNIRP-ERQTVLFSATFPRQVETLARKVLNKPVE 737
Query: 296 VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASR 355
+ +G R + NK ITQ+VEV R ++ K+L+F +++
Sbjct: 738 IQVGGRSVV--NKDITQLVEV----RPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDA 791
Query: 356 VERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINL 415
+ R++ + Y ++HG Q R +++FK CNLL+AT VAARGLD+ ++ V+N
Sbjct: 792 LYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNF 851
Query: 416 TFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
P EDYVHR+GRTGRAG+ G A T +E + A LV L + QPVP++LK
Sbjct: 852 DAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLK 907
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 251 bits (640), Expect = 2e-66
Identities = 150/403 (37%), Positives = 230/403 (56%), Gaps = 14/403 (3%)
Query: 79 EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAET 138
E TV P N S S + +I+K + F KP+PIQ+ WP LL+G+D IG+++T
Sbjct: 73 ESTVKIPPPVNSFEQAFGSNASIMGEIRK--NGFEKPSPIQSQMWPLLLSGQDCIGVSQT 130
Query: 139 GSGKTFAFGVPAINNI--------VTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
GSGKT AF +PA+ +I ++ S VLV+SPTRELA QI + +
Sbjct: 131 GSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQI-EGEVKKYSYN 189
Query: 191 GLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRML 249
G +S C+YGG + +Q E R ++V+ATPGRL DL +G + L+ V Y+VLDEADRML
Sbjct: 190 GYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRML 249
Query: 250 EKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKR 309
+ GFE I++I+ + R R + +ATWP+ VR+L + E V G+ D L++ K
Sbjct: 250 DMGFEVAIRRILFEIRP-DRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLD-LTSCKS 307
Query: 310 ITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAA 369
+TQ E V + +N K++IF K A + + G +
Sbjct: 308 VTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQG 367
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
+HG SQ R +LN ++G+ +L+ATD+A+RG+D+P++ V+N FP+ +E+YVHR+G
Sbjct: 368 LHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVG 427
Query: 430 RTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKK 472
RTGRAG+ G A + ++ L+ +L + Q VP++L++
Sbjct: 428 RTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRR 470
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 246 bits (628), Expect = 6e-65
Identities = 133/361 (36%), Positives = 217/361 (59%), Gaps = 11/361 (3%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT---SGDKSSSVKVLVIS 170
KPTPIQ+ +WP +L G D+I +A+TG+GKT ++ +P ++ + S ++ + +LV++
Sbjct: 244 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLT 303
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE 229
PTRELA + + GL+S C+YGG ++ Q ED+ + +++ATPGRL DL
Sbjct: 304 PTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN 362
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
SV+L + YLV+DEAD+ML+ FE I+KI+ R RQT+M +ATWP VR+LA S+
Sbjct: 363 NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP-DRQTVMTSATWPDTVRQLALSY 421
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
+ +P+ V +GN + ++ N I+ + + + + NDKV++F
Sbjct: 422 LKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQE-----FVENMSPNDKVIMFVSQ 476
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
K A + + G ++HG+ Q + +A+ +FK+G +L+ TD+ +RGLD+ +V
Sbjct: 477 KHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDV 536
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEE 469
V N FP ++ YVHR+G GR G+ GT+ TL T+++ +AG L+ +L+ A Q VPE+
Sbjct: 537 THVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPED 596
Query: 470 L 470
L
Sbjct: 597 L 597
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 246 bits (627), Expect = 8e-65
Identities = 137/373 (36%), Positives = 219/373 (57%), Gaps = 13/373 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT--SGDKSSSVKVLVI 169
F KPTPIQ + P +++G+D+IGIA+TGSGKT AF +P +I+ S + +++
Sbjct: 530 FEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIM 589
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIE 228
+PTREL QI ++ + + GLR CVYGG +Q +L+R ++++V TPGR++D++
Sbjct: 590 APTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLA 649
Query: 229 EGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
S +L V Y+VLDEADRM + GFE + +II R RQT+MF+AT+P+++ L
Sbjct: 650 ANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP-DRQTVMFSATFPRQMEAL 708
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
A + +P++V +G R + K + Q V +++ Y + +++
Sbjct: 709 ARRILKKPIEVIVGGRSVVC--KEVEQHVVILNDDAKFFKLLELLGIYQEAGS----IIV 762
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F ++ A + R+L Y ++HG + Q R + +FK+GK LL+AT VAARGLD
Sbjct: 763 FVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLD 822
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
+ ++ V+N P EDYVHR GRTGRAG+ G+A+T T ++ AG ++ ++ +G
Sbjct: 823 VKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTL 882
Query: 466 VPEELKKFGTHTK 478
+P EL+ T K
Sbjct: 883 IPAELQALWTEYK 895
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 245 bits (626), Expect = 1e-64
Identities = 161/428 (37%), Positives = 236/428 (54%), Gaps = 24/428 (5%)
Query: 86 SGSNIVP-YLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGK 142
SG + P L F + + + I+K + K TP+Q S P +LAG+D++ A+TGSGK
Sbjct: 279 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 338
Query: 143 TFAFGVPAINNIVTSGDKSSSVKVL------VISPTRELASQIYDNLIVLTDACGLRSCC 196
T AF +P + +++ G +S K L +++PTREL +QIY + +R+
Sbjct: 339 TAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 398
Query: 197 VYGGVPKDQQ-REDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEE 255
+YGG R+ ++ ++ ATPGRL+D+I + + L + YLVLDEADRML+ GF
Sbjct: 399 IYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGP 458
Query: 256 DIKKIIR---QTRSTSRQTLMFTATWPKEVRELASSFM-SEPVKVSIGNRDELSANKRIT 311
++KK+I RQTLMF+AT+P+E++ LA+ F+ S + V++G A + +
Sbjct: 459 EMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACRDVQ 516
Query: 312 QIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIH 371
Q V V F +++ ++F KK+A + L +IH
Sbjct: 517 QTVLQVGQFSKREKLVEILRNIG-----DERTMVFVETKKKADFIATFLCQEKISTTSIH 571
Query: 372 GDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 431
GD Q++R QAL +F+ GKC +L+AT VAARGLDI NV+ VIN P T+++YVHRIGRT
Sbjct: 572 GDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 631
Query: 432 GRAGQYGTAHTLF-TEQEKHLAGALVNVLNGAGQPVPEELKK--FGTHTKKKEHSAYGAF 488
GR G G A + F E + HLA LV VL A Q VP L++ F T+ S G
Sbjct: 632 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNV 691
Query: 489 FKDVDLSK 496
F VD K
Sbjct: 692 FASVDTRK 699
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 243 bits (620), Expect = 5e-64
Identities = 152/386 (39%), Positives = 221/386 (56%), Gaps = 15/386 (3%)
Query: 92 PYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P F+ SF + + I S++ +PTPIQA++ P L+G+DV+GIA+TGSGKT A+ P
Sbjct: 263 PVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWP 322
Query: 150 AINNIVTSGDKSSS---VKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQ 206
AI +I+ D + V V+V+ PTRELA Q++ + C YGG K +Q
Sbjct: 323 AIVHIMDQPDLKAGEGPVAVIVV-PTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQ 381
Query: 207 REDLRR--SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQT 264
+L+ +++VV TPGR++DL++ G+ + +LV DEADRM + GFE +K I
Sbjct: 382 SNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHV 441
Query: 265 RSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXX 324
R RQ LMF+AT+ ++V LA + +PV++ G E AN I Q V V+
Sbjct: 442 R-PDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGE--ANADIEQKVFVMQNQDVKL 498
Query: 325 XXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALN 384
+ KVLIF K ++ V + LK +D+ +HGD+ Q +R + L
Sbjct: 499 HWLIRNLVEFA---SLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLL 555
Query: 385 EFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF 444
+F+ K +L+ATDVAARGLDI ++TVIN ++ +VHRIGRTGRAG GTA+TL
Sbjct: 556 KFRK-KSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLV 614
Query: 445 TEQEKHLAGALVNVLNGAGQPVPEEL 470
TE++ + G LV L Q VP+ L
Sbjct: 615 TEKDIEMVGHLVKNLESVSQEVPKPL 640
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 240 bits (613), Expect = 3e-63
Identities = 146/411 (35%), Positives = 230/411 (55%), Gaps = 19/411 (4%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P +SQ Q I+ + KPT IQA + P + +G+DVIG+A+TGSGKT AF +P
Sbjct: 416 PVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP 475
Query: 150 AINNIVTSGDKSSSVK--VLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR 207
+I + ++++PTRELA QI+ +R+CC YGG P Q
Sbjct: 476 MFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQI 535
Query: 208 EDLRR-SQVVVATPGRLLDLIEEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ 263
DL+R +++VV TPGR++D++ + +L YLVLDEADRM + GFE + +II
Sbjct: 536 ADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINN 595
Query: 264 TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEV-VDPFRX 322
R RQT++F+AT+P+ + LA + +PV++++G R +++ + QIVEV + +
Sbjct: 596 IRP-DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE--VEQIVEVRPEESKF 652
Query: 323 XXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQA 382
Y++ + + L+F ++ A + +L GY +IHG Q R
Sbjct: 653 SRLLELLGELYNN--QLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDST 710
Query: 383 LNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
++++KAG ++L+AT V ARGLD+ +++ V+N P +EDYVHR+GRTGRAG G A T
Sbjct: 711 ISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVT 770
Query: 443 LFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKK-----KEHSAYGAF 488
T +++ A + L + QPVP+EL+ + + KE +A G F
Sbjct: 771 FITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGF 821
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 239 bits (611), Expect = 5e-63
Identities = 150/408 (36%), Positives = 220/408 (53%), Gaps = 15/408 (3%)
Query: 74 FLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKD 131
F K N + V P F+ D I ++K + PTPIQ S P + +G+D
Sbjct: 225 FSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRD 284
Query: 132 VIGIAETGSGKTFAFGVPAINNIVTSGDKSS--SVKVLVISPTRELASQIYDNLIVLTDA 189
++ A+TGSGKT AF +P ++ ++ + +V+++SPTRELA QI++
Sbjct: 285 LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE 344
Query: 190 CGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRM 248
L+ VYGG Q E + R VV+ATPGRLLD ++ + ++VLDEADRM
Sbjct: 345 SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM 404
Query: 249 LEKGFEEDIKKIIRQ-TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSAN 307
L+ GF ED+++I+ T QTLMF+AT+P+E++ +A F+ V V+IG A
Sbjct: 405 LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GAC 462
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
+ Q + V+ + G ++F K+ A + L +
Sbjct: 463 SDVKQTIYEVNKYAKRSKLIEILSEQADG------TIVFVETKRGADFLASFLSEKEFPT 516
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 427
+IHGD Q QR QAL +FK G +L+AT VA+RGLDI N+K VIN P ++DYVHR
Sbjct: 517 TSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHR 576
Query: 428 IGRTGRAGQYGTAHTLF-TEQEKHLAGALVNVLNGAGQPVPEELKKFG 474
IGRTGR G G A + F E+++ +A LV +L G+GQ VP+ L+ G
Sbjct: 577 IGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTCG 624
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 239 bits (610), Expect = 7e-63
Identities = 151/407 (37%), Positives = 234/407 (57%), Gaps = 30/407 (7%)
Query: 86 SGSNIVPYLD-FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGK 142
SG ++ ++ F++ F + + +++ + KPTP+Q S P LLA +D++ A+TGSGK
Sbjct: 114 SGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGK 173
Query: 143 TFAFGVPAINNIV------------TSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
T AF +P I +I+ T+G ++ LV+SPTRELA QI+ +
Sbjct: 174 TAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKS 233
Query: 191 GLRSCCVYGGVPKDQQREDLRR----SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEAD 246
+++ +YGG ++ R+ + R + +++ATPGRL+D+IE+G + L+ YLVLDEAD
Sbjct: 234 NIQTAILYGG--RENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEAD 291
Query: 247 RMLEKGFEEDIKKIIRQTR--STSRQTLMFTATWPKEVRELASSFMSEP-VKVSIGNRDE 303
RML+ GFE I+KI+ Q T+R T MF+AT+PKE++ LA F+ + + +++G
Sbjct: 292 RMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGS 351
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
S N I Q + V+ HS + VL+F K+ A+ + L
Sbjct: 352 TSEN--IEQRLLWVNEMEKRSNLMEILMNEHS----ENLVLVFVETKRGANELAYFLNRQ 405
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
+IHGDL Q +R + L F++G+C +L+AT VAARGLDIPNV+ VIN P ++
Sbjct: 406 QIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 465
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
YVHRIGRTGR G G A + F ++ + + L N++ + Q VPE L
Sbjct: 466 YVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWL 512
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 239 bits (610), Expect = 7e-63
Identities = 151/407 (37%), Positives = 234/407 (57%), Gaps = 30/407 (7%)
Query: 86 SGSNIVPYLD-FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGK 142
SG ++ ++ F++ F + + +++ + KPTP+Q S P LLA +D++ A+TGSGK
Sbjct: 111 SGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGK 170
Query: 143 TFAFGVPAINNIV------------TSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
T AF +P I +I+ T+G ++ LV+SPTRELA QI+ +
Sbjct: 171 TAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKS 230
Query: 191 GLRSCCVYGGVPKDQQREDLRR----SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEAD 246
+++ +YGG ++ R+ + R + +++ATPGRL+D+IE+G + L+ YLVLDEAD
Sbjct: 231 NIQTAILYGG--RENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEAD 288
Query: 247 RMLEKGFEEDIKKIIRQTR--STSRQTLMFTATWPKEVRELASSFMSEP-VKVSIGNRDE 303
RML+ GFE I+KI+ Q T+R T MF+AT+PKE++ LA F+ + + +++G
Sbjct: 289 RMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGS 348
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
S N I Q + V+ HS + VL+F K+ A+ + L
Sbjct: 349 TSEN--IEQRLLWVNEMEKRSNLMEILMNEHS----ENLVLVFVETKRGANELAYFLNRQ 402
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
+IHGDL Q +R + L F++G+C +L+AT VAARGLDIPNV+ VIN P ++
Sbjct: 403 QIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 462
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
YVHRIGRTGR G G A + F ++ + + L N++ + Q VPE L
Sbjct: 463 YVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWL 509
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 239 bits (609), Expect = 9e-63
Identities = 154/419 (36%), Positives = 230/419 (54%), Gaps = 30/419 (7%)
Query: 74 FLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKD 131
F K +++ V + SG +I P +F+ + + I S + +PTP+Q S P + +G+D
Sbjct: 150 FEKYDDIPV-EVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRD 208
Query: 132 VIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK---------------VLVISPTRELA 176
++ A+TGSGKT F P ++ G + V L+++PTREL
Sbjct: 209 LMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELV 268
Query: 177 SQIYDNLIVLTDACGLRSCCVYGGVP-KDQQREDLRRSQVVVATPGRLLDLIEEGSVDLS 235
QI++ +R C VYGG + Q R+ + ++ ATPGRL+DLI+ G + L+
Sbjct: 269 CQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLA 328
Query: 236 HVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS---RQTLMFTATWPKEVRELASSFMSE 292
++ +LVLDEADRML+ GFE I+ I+ TS RQTLMF+AT+P++++ LA F+ +
Sbjct: 329 NIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKD 388
Query: 293 PVKVSIGNRDELSANKRITQ-IVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
V +S+G S N ITQ +V V D + G T LIF K+
Sbjct: 389 YVFLSVGRVGSTSEN--ITQKVVHVEDSEKRSYLLDILHTLPPEGLT-----LIFVETKR 441
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
A + L + + +IHGD +Q++R +AL F++G+ ++++AT VA+RGLDIPNV
Sbjct: 442 MADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTH 501
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P ++DYVHRIGRTGRAG G A F K +A L+ +L A Q P L
Sbjct: 502 VINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFL 560
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 237 bits (604), Expect = 3e-62
Identities = 152/402 (37%), Positives = 223/402 (54%), Gaps = 18/402 (4%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151
L F ++ + K I+ F +PTPIQ P L GKD+ A TG+GKT AF +P +
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 152 NNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR 211
++ ++ +VLV+ PTREL Q++ L C + +C GG+ Q LR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 212 RS-QVVVATPGRLLDLIEE-GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR 269
+ +++ATPGRL+D + S LS + L+LDEADRML++ FEE +K+IIR S R
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHHR 396
Query: 270 QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXX 329
QT++F+AT EV++LAS + PV++ + + +++ R Q + P R
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLR--QEFIRIRPNREGDREAIV 454
Query: 330 XXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAG 389
T D V++F KK+A R+ L G V +HG+LSQ QR +AL FK
Sbjct: 455 AALLTR--TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 512
Query: 390 KCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
+ ++L+ATDVAARGLDI VKTVIN T P T++ YVHR+GRT RAG+ G + +L E E+
Sbjct: 513 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDER 572
Query: 450 HLAGALVNVLNGAGQPV-----PEE-LKKFGTHTKKKEHSAY 485
+ L ++ A PV P++ + KF +K E Y
Sbjct: 573 KM---LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 611
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 237 bits (604), Expect = 3e-62
Identities = 145/395 (36%), Positives = 224/395 (56%), Gaps = 19/395 (4%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD--KSSSVKVLV 168
++ KPT IQA + P +++G+DVIGIA+TGSGKT AF +P +I+ + + ++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 382
Query: 169 ISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLI 227
++PTRELA Q Y GL+ C YGGV +Q DL+R +++VV TPGR++D++
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442
Query: 228 EEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRE 284
S +L V YLVLDEADRM +KGFE I K++ R +QT++F+AT+P+ +
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP-DKQTVLFSATFPRHMEA 501
Query: 285 LASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVL 344
LA + +PV++ +G + + ++ ITQ + + Y+ + +
Sbjct: 502 LARKVLDKPVEILVGGKSVVCSD--ITQNAVICAEHQKFLKLLELLGMYY----EEGSSI 555
Query: 345 IFALYKKEASRVERNLKYNGYD-VAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
+F +++A + L GY+ VA +HG + Q R ++ +FK G +L+AT VAARG
Sbjct: 556 VFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARG 615
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT-LFTEQEKHLAGALVNVLNGA 462
LD+ N+ V+N P EDYVHR+GRTGRAG+ G A+T + E ++ +AG + A
Sbjct: 616 LDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETA 675
Query: 463 GQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKK 497
G P +LK K E +A G K+V L K
Sbjct: 676 GCKPPADLKAM-FERFKSEMAAEG---KEVKLGGK 706
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 237 bits (604), Expect = 3e-62
Identities = 145/395 (36%), Positives = 224/395 (56%), Gaps = 19/395 (4%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD--KSSSVKVLV 168
++ KPT IQA + P +++G+DVIGIA+TGSGKT AF +P +I+ + + ++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 382
Query: 169 ISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLI 227
++PTRELA Q Y GL+ C YGGV +Q DL+R +++VV TPGR++D++
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442
Query: 228 EEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRE 284
S +L V YLVLDEADRM +KGFE I K++ R +QT++F+AT+P+ +
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP-DKQTVLFSATFPRHMEA 501
Query: 285 LASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVL 344
LA + +PV++ +G + + ++ ITQ + + Y+ + +
Sbjct: 502 LARKVLDKPVEILVGGKSVVCSD--ITQNAVICAEHQKFLKLLELLGMYY----EEGSSI 555
Query: 345 IFALYKKEASRVERNLKYNGYD-VAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
+F +++A + L GY+ VA +HG + Q R ++ +FK G +L+AT VAARG
Sbjct: 556 VFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARG 615
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT-LFTEQEKHLAGALVNVLNGA 462
LD+ N+ V+N P EDYVHR+GRTGRAG+ G A+T + E ++ +AG + A
Sbjct: 616 LDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETA 675
Query: 463 GQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKK 497
G P +LK K E +A G K+V L K
Sbjct: 676 GCKPPADLKAM-FERFKSEMAAEG---KEVKLGGK 706
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 232 bits (592), Expect = 9e-61
Identities = 151/418 (36%), Positives = 232/418 (55%), Gaps = 56/418 (13%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIVPYLDF-SQVSFIDQIQKEISK--FPKPTPIQAVSW 123
+Q ++ + KE E+ V G ++ + F Q +I + K + KP PIQA +
Sbjct: 371 TQDAVNAYRKELELKVH---GKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQAL 427
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNI-----VTSGDKSSSVKVLVISPTRELASQ 178
P +++G+D IG+A+TGSGKT F +P + +I V +GD LV++PTREL Q
Sbjct: 428 PIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIG---LVMAPTRELVQQ 484
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGS---VDL 234
IY ++ + A G+ VYGG QQ +L+R +++VV TPGR++D++ S +L
Sbjct: 485 IYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNL 544
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPV 294
V YLV+DEADRM + GFE I +I++ R RQT++F+AT+P++V LA +++PV
Sbjct: 545 RRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTVLFSATFPRQVETLARKVLNKPV 603
Query: 295 KVSIGNRDELSANKRITQIVEV-VDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
++ +G R + NK ITQ+VE+ + R Y G KVL+F
Sbjct: 604 EIQVGGRSVV--NKDITQLVEIRPESERFSRLLELLGEWYEKG-----KVLVFV------ 650
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ + +++++FK+ CNLL+AT VAARGLD+ ++ V+
Sbjct: 651 -----------------------RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVV 687
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELK 471
N P EDYVHR+GRTGRAG+ G A T +E + A LV L + QPVP+++K
Sbjct: 688 NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVK 745
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 227 bits (578), Expect = 4e-59
Identities = 143/377 (37%), Positives = 217/377 (56%), Gaps = 22/377 (5%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG-----DKSSSVKVLVI 169
PTPIQ P +LAG+D+IGIA TGSGKT F +P I + +++ L+I
Sbjct: 200 PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLII 259
Query: 170 SPTRELASQIYDNLIVLT---DACGL---RSCCVYGGVPKDQQREDLRRS-QVVVATPGR 222
P+RELA Q ++ + + ACG+ RSC GG+P + + + R +VVATPGR
Sbjct: 260 CPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGR 319
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
L+D++++ + L YL +DEADRM++ GFEED++ I + RQTL+F+AT PK++
Sbjct: 320 LMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKG-QRQTLLFSATMPKKI 378
Query: 283 RELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
+ A S + +PV +++G S N +TQ VE V + + P
Sbjct: 379 QNFARSALVKPVTINVGRAGAASMN--VTQQVEYVK--QEAKVVYLLDCLQKTAPP---- 430
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
VLIFA K++ + L G + AIHG Q++R++A++ ++ GK ++L+ATDVA++
Sbjct: 431 VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASK 490
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE-QEKHLAGALVNVLNG 461
GLD PNV+ VIN P +E+YVHRIGRTGR+ G A TL + E+ + L ++L
Sbjct: 491 GLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIE 550
Query: 462 AGQPVPEELKKFGTHTK 478
Q VP+ L + T+
Sbjct: 551 GKQEVPDFLDELAPETE 567
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 225 bits (573), Expect = 1e-58
Identities = 147/409 (35%), Positives = 219/409 (52%), Gaps = 36/409 (8%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P ++ + ++ K + K + +P+ IQ + P LL KD+IGIAETGSGKT AF +P
Sbjct: 247 PLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIP 306
Query: 150 AINNI-----VTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKD 204
I I +T + +V++PTRELA QI + G R V GG +
Sbjct: 307 LIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFE 366
Query: 205 QQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ 263
+Q + + + +VVATPGRLLD +E LS Y+V+DEADRML+ GFE+D+ KI+
Sbjct: 367 EQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSS 426
Query: 264 ------------------TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELS 305
+ S+ RQT+MF+AT P V LA S++ EPV ++IGN +
Sbjct: 427 LPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQ-- 484
Query: 306 ANKRITQIVEVV--DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
A R+ Q VE++ D + S P ++IF K+ + + L
Sbjct: 485 AVDRVEQRVEMISDDSKKWRRVEEILESNRFSPP-----IIIFVNLKRNIEAIAKQLNAI 539
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
G+ +HG SQ+QR +A+ + + ++L+ATD+A RG+DIPNV V+N ++ED
Sbjct: 540 GWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIED 599
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGAL-VNVLNGAGQPVPEELK 471
Y HRIGRTGRAG+ GTA T ++ + L V + A +P+EL+
Sbjct: 600 YTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELR 648
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 223 bits (569), Expect = 4e-58
Identities = 142/414 (34%), Positives = 216/414 (51%), Gaps = 41/414 (9%)
Query: 69 SDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYL 126
+D D + + +++ G P + S I + I K + +PTPIQ + P
Sbjct: 366 TDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIG 425
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSG------DKSSSVKVLVISPTRELASQIY 180
L +D+IG+AETGSGKT AF +P + I T + ++++PTRELA QI
Sbjct: 426 LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIE 485
Query: 181 DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNY 239
+ I G+R+ V GG+ ++ Q LR ++V+ATPGRL+D++E + LS Y
Sbjct: 486 EETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTY 545
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTS-------------------------RQTLMF 274
+VLDEADRM++ GFE D++KI+ ++ RQT+MF
Sbjct: 546 VVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMF 605
Query: 275 TATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYH 334
TAT P V LA S++ P V IG+ + ++R+ Q V ++
Sbjct: 606 TATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGF 663
Query: 335 SGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLL 394
P ++IF KK + ++L+ GY+ +HG Q+QR AL+ KAG ++L
Sbjct: 664 DPP-----IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDIL 718
Query: 395 LATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
+ATDVA RG+DI +V V+N +EDY+HRIGRTGRAG+ G A T T+++
Sbjct: 719 VATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 223 bits (569), Expect = 4e-58
Identities = 142/414 (34%), Positives = 216/414 (51%), Gaps = 41/414 (9%)
Query: 69 SDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYL 126
+D D + + +++ G P + S I + I K + +PTPIQ + P
Sbjct: 366 TDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIG 425
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSG------DKSSSVKVLVISPTRELASQIY 180
L +D+IG+AETGSGKT AF +P + I T + ++++PTRELA QI
Sbjct: 426 LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIE 485
Query: 181 DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNY 239
+ I G+R+ V GG+ ++ Q LR ++V+ATPGRL+D++E + LS Y
Sbjct: 486 EETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTY 545
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTS-------------------------RQTLMF 274
+VLDEADRM++ GFE D++KI+ ++ RQT+MF
Sbjct: 546 VVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMF 605
Query: 275 TATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYH 334
TAT P V LA S++ P V IG+ + ++R+ Q V ++
Sbjct: 606 TATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVFLMSESEKRKKLLAILEQGF 663
Query: 335 SGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLL 394
P ++IF KK + ++L+ GY+ +HG Q+QR AL+ KAG ++L
Sbjct: 664 DPP-----IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDIL 718
Query: 395 LATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
+ATDVA RG+DI +V V+N +EDY+HRIGRTGRAG+ G A T T+++
Sbjct: 719 VATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 223 bits (569), Expect = 4e-58
Identities = 144/385 (37%), Positives = 213/385 (54%), Gaps = 23/385 (5%)
Query: 100 SFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD 159
S ++ +QK+ PT IQ P L+G+D+IGIA TGSGKT F +P + +
Sbjct: 199 SLLEFMQKQ-KGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEM 257
Query: 160 KSSSVKV-----LVISPTRELASQIYDNLIVLTDACG------LRSCCVYGGVPKDQQRE 208
K ++ L+I P+RELA QI+D +I + DA G +R+ GGVP +Q +
Sbjct: 258 KLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAK 317
Query: 209 DLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST 267
D+R +VVATPGRL D++ + ++L YLVLDEADRML+ GFE++IK I ++
Sbjct: 318 DVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKA- 376
Query: 268 SRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXX 327
RQTL+F+AT P++++ A S + +P+ V++G S N V+
Sbjct: 377 QRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLN--------VLQELEFVRSEN 428
Query: 328 XXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFK 387
+ KVLIFA K + + L G +VA+IHG Q R + F+
Sbjct: 429 KLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFR 488
Query: 388 AGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
+ ++L+ATDVA++GLD ++ VIN P +E+YVHRIGRTGR+G+ G A T ++
Sbjct: 489 KNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 548
Query: 448 -EKHLAGALVNVLNGAGQPVPEELK 471
E + L +L AGQ +PE LK
Sbjct: 549 SEMSVLSDLKQLLAEAGQELPEFLK 573
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 221 bits (564), Expect = 2e-57
Identities = 150/458 (32%), Positives = 224/458 (48%), Gaps = 52/458 (11%)
Query: 66 ASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
+ SD D + + +S G P ++ + F D++ + + + + +PTPIQ +
Sbjct: 273 SEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAI 332
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT------SGDKSSSVKVLVISPTRELAS 177
P L +DVIG+AETGSGKT AF +P + I + + ++++PTRELA
Sbjct: 333 PIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQ 392
Query: 178 QIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSH 236
QI + G+++ V GG ++ Q LR +VV+ATPGRLLD++E + L+
Sbjct: 393 QIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQ 452
Query: 237 VNYLVLDEADRMLEKGFEEDIKKIIR------------------------QTRSTSRQTL 272
Y++LDEADRML+ GFE D++K++ TR RQT+
Sbjct: 453 CTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTV 512
Query: 273 MFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXX 332
MFTAT + LA ++ P V IG+ + +R+ Q+V +V R
Sbjct: 513 MFTATMSSAIERLARQYLRRPAVVHIGSAGK--PTERVEQVVYMVPEDRKRKKLVEVLES 570
Query: 333 YHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCN 392
P ++IF KK A + + L G+ +HG Q QR AL K G +
Sbjct: 571 QFQPP-----IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 393 LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLA 452
+L+ATDVA RG+D+ +V V+N ++EDY HRIGRTGRAG++G A T T + +
Sbjct: 626 ILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVY 685
Query: 453 GALVNVLNGAGQPV----------PEELKKFGTHTKKK 480
L VL PV P+ K G T KK
Sbjct: 686 FDLKQVL--VESPVSSCPPELANHPDAQSKPGVFTSKK 721
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 221 bits (563), Expect = 2e-57
Identities = 136/362 (37%), Positives = 205/362 (56%), Gaps = 16/362 (4%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151
L S++ +I K +S K PIQ + G+D+IG A TG+GKT AFG+P I
Sbjct: 104 LAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
Query: 152 NNIVTSGDKSSSVK---VLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQRE 208
+ I+ K + LV++PTRELA Q+ A L + C+YGG P QQ
Sbjct: 164 DKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF--RESAPSLDTICLYGGTPIGQQMR 221
Query: 209 DLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST 267
L V V TPGR++DL++ G+++LS V ++VLDEAD+ML+ GF ED++ II +
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVE-IILEKLPE 280
Query: 268 SRQTLMFTATWPKEVRELASSFMSEPVKVS-IGNRDELSANKRITQIVEVVDPFRXXXXX 326
RQ++MF+AT P +R L +++ P+ V +G+ D+ A+ IT + D +
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADG-ITTYSIIADSYGRASII 339
Query: 327 XXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEF 386
+ K K ++F K++A R+ L + A+HGD+SQ QR + L F
Sbjct: 340 GPLVTEH----AKGGKCIVFTQTKRDADRLSYALA-RSFKCEALHGDISQSQRERTLAGF 394
Query: 387 KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE 446
+ G N+L+ATDVAARGLD+PNV +I+ P E +VHR GRTGRAG+ G+A ++++
Sbjct: 395 RDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQ 454
Query: 447 QE 448
+
Sbjct: 455 DQ 456
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 221 bits (562), Expect = 3e-57
Identities = 142/427 (33%), Positives = 215/427 (50%), Gaps = 40/427 (9%)
Query: 66 ASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
+ SD D + + +S G P ++ + F D++ + + + + +PTPIQ +
Sbjct: 273 SEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAI 332
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT------SGDKSSSVKVLVISPTRELAS 177
P L +DVIG+AETGSGKT AF +P + I + + ++++PTRELA
Sbjct: 333 PIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQ 392
Query: 178 QIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSH 236
QI + G+++ V GG ++ Q LR +VV+ATPGRLLD++E + L+
Sbjct: 393 QIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQ 452
Query: 237 VNYLVLDEADRMLEKGFEEDIKKIIR------------------------QTRSTSRQTL 272
Y++LDEADRML+ GFE D++K++ TR RQT+
Sbjct: 453 CTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTV 512
Query: 273 MFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXX 332
MFTAT + LA ++ P V IG+ + +R+ Q+V +V R
Sbjct: 513 MFTATMSSAIERLARQYLRRPAVVHIGSAGK--PTERVEQVVYMVPEDRKRKKLVEVLES 570
Query: 333 YHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCN 392
P ++IF KK A + + L G+ +HG Q QR AL K G +
Sbjct: 571 QFQPP-----IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 393 LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLA 452
+L+ATDVA RG+D+ +V V+N ++EDY HRIGRTGRAG++G A T T + +
Sbjct: 626 ILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVY 685
Query: 453 GALVNVL 459
L VL
Sbjct: 686 FDLKQVL 692
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 221 bits (562), Expect = 3e-57
Identities = 132/347 (38%), Positives = 205/347 (59%), Gaps = 12/347 (3%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV-KVLVISPTR 173
PTPIQA + P L G+D+ G A TG+GKT A+ +P + ++ + ++ +VLV+ PTR
Sbjct: 180 PTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTR 239
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEG-S 231
EL +Q+Y L + GG+ Q LR++ +V+ATPGRL+D I+ S
Sbjct: 240 ELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPS 299
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
L + L+LDEADRML++ F E +K+II T RQT++F+AT ++V++LA+ +
Sbjct: 300 FTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT-RQTMLFSATMSEQVKDLAAVSLD 358
Query: 292 EPVKVSIGNRDELSANKR--ITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
+P+KV + N +++ N R +I E + R +H D ++F
Sbjct: 359 KPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFH------DHCMVFVQT 412
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
KK+A R+ L G +HG+L+QQQR ++L +FK + ++L+ATDVAARGLDI V
Sbjct: 413 KKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGV 472
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALV 456
KTVIN P+T E Y+HR+GRT RAG+ G + +L E+E+ + ++
Sbjct: 473 KTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDII 519
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 219 bits (558), Expect = 8e-57
Identities = 132/329 (40%), Positives = 190/329 (57%), Gaps = 14/329 (4%)
Query: 117 PIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK---VLVISPTR 173
PIQ + G+D+IG A TG+GKT AFG+P I+ I+ K K LV++PTR
Sbjct: 141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTR 200
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSV 232
ELA Q+ A L + C+YGG P QQ +L V V TPGR++DL++ G++
Sbjct: 201 ELARQVEKEF--RESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGAL 258
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
+LS V ++VLDEAD+ML+ GF ED++ II Q RQ++MF+AT P +R L +++
Sbjct: 259 NLSEVQFVVLDEADQMLQVGFAEDVE-IILQKLPAKRQSMMFSATMPSWIRSLTKKYLNN 317
Query: 293 PVKVS-IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
P+ + +G+ D+ A+ IT D + + G K ++F K+
Sbjct: 318 PLTIDLVGDSDQKLADG-ITMYSIAADSYGRASIIGPLVKEHGKG----GKCIVFTQTKR 372
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+A R+ L Y A+HGD+SQ QR + L F+ G ++L+ATDVAARGLD+PNV
Sbjct: 373 DADRLAFGLA-KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDL 431
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
VI+ P E +VHR GRTGRAG+ G+A
Sbjct: 432 VIHYELPNNTETFVHRTGRTGRAGKKGSA 460
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 218 bits (556), Expect = 1e-56
Identities = 135/410 (32%), Positives = 228/410 (54%), Gaps = 17/410 (4%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAV 121
A+A + + + ++ V+ + + + + FS+++ + ++ + + KPTPIQ+
Sbjct: 93 ATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSK 152
Query: 122 SWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYD 181
+ P L G D+IG+A+TGSGKT AF +P +N + +++PTRELA QI +
Sbjct: 153 AIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL---WHDQEPYYACILAPTRELAQQIKE 209
Query: 182 NLIVLTDACGLRSCCVYGGVPK-DQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNY 239
L G+RS C+ GG+ DQ R+ +R+ +++ATPGRL+D +E L + +
Sbjct: 210 TFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKF 269
Query: 240 LVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIG 299
LV+DEADR+L+ F + +I++ + R T +F+AT ++ +L + ++ PVK ++
Sbjct: 270 LVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVS 329
Query: 300 NRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERN 359
N+ + + Q + VV P G T ++IF K A R+
Sbjct: 330 NKYQTVDT--LVQTLMVV-PGGLKNTYLIYLLNEFIGKT----MIIFTRTKANAERLSGL 382
Query: 360 LKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPL 419
+ A+HGDL+Q QR +L+ FKAGK ++L+ATDVAARGLDIP+V V+N P+
Sbjct: 383 CNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPV 442
Query: 420 TVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEE 469
+ Y+HR+GRT RAG+ G + +L ++ + L + VL G+ +P+E
Sbjct: 443 DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL---GKKLPKE 489
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 216 bits (551), Expect = 5e-56
Identities = 143/395 (36%), Positives = 213/395 (53%), Gaps = 24/395 (6%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P F ++ F I + + K PTPIQ P +L+G+D+IGIA TGSGKT F +P
Sbjct: 179 PIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLP 238
Query: 150 AINNIVTSG-----DKSSSVKVLVISPTRELASQIYDNL-----IVLTDACGLRSCCV-Y 198
I + K L+I P+RELA Q + L ++ D+ L C +
Sbjct: 239 VIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI 298
Query: 199 GGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDI 257
GG+ +Q E +R ++VATPGRL+DL+++ V L YL LDEADRM++ GFE DI
Sbjct: 299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358
Query: 258 KKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVV 317
+ I + RQTL+F+AT PK+++ A S + +PV +++G S + +++ V
Sbjct: 359 RTIFSYFKG-QRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLD-----VIQEV 412
Query: 318 DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQ 377
+ + P VLIFA K + + L G + AIHG Q+
Sbjct: 413 EYVKEEAKMVYLLECLQKTPPP---VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQE 469
Query: 378 QRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQY 437
+RT+A+ F+ GK ++L+ATDVA++GLD P ++ VIN P +E+YVHRIGRTGR+G
Sbjct: 470 ERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Query: 438 GTAHTLFTEQ-EKHLAGALVNVLNGAGQPVPEELK 471
G A T + ++ + L +L A Q VP L+
Sbjct: 530 GIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 216 bits (551), Expect = 5e-56
Identities = 143/400 (35%), Positives = 209/400 (51%), Gaps = 42/400 (10%)
Query: 74 FLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKD 131
F ++ VT+ N P +++ F +I I K + +PTPIQ + P L +D
Sbjct: 376 FREDYNVTIKGGRIPN--PIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRD 433
Query: 132 VIGIAETGSGKTFAFGVPAIN------NIVTSGDKSSSVKVLVISPTRELASQIYDNLIV 185
+IG+AETGSGKT AF +P ++ I D ++++PTRELA QI +
Sbjct: 434 IIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTK 493
Query: 186 LTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDE 244
G+R+ V GG+ +++Q LR ++V+ATPGRL+D++E + L+ Y+VLDE
Sbjct: 494 FGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 553
Query: 245 ADRMLEKGFEEDIKKIIRQ------------------------TRSTSRQTLMFTATWPK 280
ADRM++ GFE D++KI+ T+ RQT+MFTAT P
Sbjct: 554 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPP 613
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN 340
V LA +++ P V IG+ + +R QIV ++ P
Sbjct: 614 AVERLARTYLRRPATVYIGSVGK--PTERTEQIVYMMGENDKRKKLMEILSRKIDPP--- 668
Query: 341 DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
V+IF KK A + + L+ GY+ +HG Q+QR AL K+G ++L+ATDVA
Sbjct: 669 --VIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVA 726
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
RG+DI +V VIN T+EDY HRIGRTGRAG+ G A
Sbjct: 727 GRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCA 766
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 216 bits (550), Expect = 6e-56
Identities = 144/401 (35%), Positives = 213/401 (52%), Gaps = 12/401 (2%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVP--YLDFSQVSFIDQIQKEISK--FPKPTPIQ 119
+S S+ D +E K+N +++ + F ++ I K +S F PT IQ
Sbjct: 227 SSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQ 286
Query: 120 AVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQI 179
+ P L GKD++G A TGSGKT AF VP + ++ K + +VL++ PTRELA Q
Sbjct: 287 DKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQC 346
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLR-RSQVVVATPGRLLDLIEEGS-VDLSHV 237
+ + + C GG+ Q ++LR R +V+ATPGR +D + + ++
Sbjct: 347 HSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENI 406
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVS 297
+V+DEADRMLE GF +++ +II Q SRQT++F+AT +V +L ++ PV+V
Sbjct: 407 EIMVMDEADRMLEDGFADELNEII-QACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVF 465
Query: 298 IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVE 357
+ N+ + K +TQ V P R Y + + +IF K A ++
Sbjct: 466 VDNKKTTA--KLLTQEFVRVRPQRELLRPAMLI--YLCKELFHRRTIIFFRSKAFAHKMR 521
Query: 358 RNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
+ IHG LSQ+QR +AL +F+ GKCN LLATDVA+RG+DI ++ VIN
Sbjct: 522 VIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEA 581
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTLFTE-QEKHLAGALVN 457
P T E Y+HR+GRT RAG+ G A TL E K L G N
Sbjct: 582 PATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKN 622
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 215 bits (548), Expect = 1e-55
Identities = 142/382 (37%), Positives = 209/382 (54%), Gaps = 24/382 (6%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV------L 167
+PTPIQ P +LAG+D+IGIA TGSGKT F +P I I + + L
Sbjct: 168 QPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM-IALQEEMMMPIAAGEGPIGL 226
Query: 168 VISPTRELASQIYDNL------IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATP 220
++ P+RELA Q Y+ + +V LRS GG+ Q E ++R +VVATP
Sbjct: 227 IVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATP 286
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPK 280
GRL D++ + + L YL LDEADR+++ GFE+DI+++ +S RQTL+F+AT P
Sbjct: 287 GRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKS-QRQTLLFSATMPT 345
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN 340
+++ A S + +PV V++G +AN + Q VE V + + P
Sbjct: 346 KIQIFARSALVKPVTVNVGRAG--AANLDVIQEVEYVK--QEAKIVYLLECLQKTSPP-- 399
Query: 341 DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
VLIF K + + L G + AIHG Q+ R A++ FKAGK ++L+ATDVA
Sbjct: 400 --VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVA 457
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE-QEKHLAGALVNVL 459
++GLD P+++ VIN P +E+YVHRIGRTGR G+ G A T + Q + L ++L
Sbjct: 458 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 517
Query: 460 NGAGQPVPEELKKFGTHTKKKE 481
A Q +P L + ++ E
Sbjct: 518 QEAKQRIPPVLAELNDPMEEAE 539
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 212 bits (539), Expect = 1e-54
Identities = 150/431 (34%), Positives = 224/431 (51%), Gaps = 28/431 (6%)
Query: 67 SQSDIDEFLKENEVTVSDPSGSNIVPYL-DFSQVSFIDQIQKEISK--FPKPTPIQAVSW 123
S +D K+ +TV+ G +I P + +F + F + + + PTPIQ
Sbjct: 72 STKQMDLIRKQWHITVN---GEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGL 128
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAI-----NNIVTSGDKSSSVKVLVISPTRELASQ 178
P +L+G+D+IGIA TGSGKT F +P I I+ LVI P+RELA Q
Sbjct: 129 PVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
Query: 179 IYDNL------IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGS 231
YD + +V LRS GGV Q + +++ +VVATPGRL D++ +
Sbjct: 189 TYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK 248
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+ L L LDEADR+++ GFE+DI+ + +S RQTL+F+AT P +++ A+S +
Sbjct: 249 MSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKS-QRQTLLFSATMPAKIQIFATSALV 307
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
+PV V++G +AN + Q VE V VLIF K
Sbjct: 308 KPVTVNVGRAG--AANLDVIQEVEYVKQ------EAKIVYLLECLQKTTPPVLIFCENKA 359
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+ + L G + AIHG Q+ R A++ FKAGK ++L+ATDVA++GLD P+++
Sbjct: 360 DVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQH 419
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGA-LVNVLNGAGQPVPEEL 470
VIN P +E+YVHRIGRTGR G+ G A T + + + L ++L A Q +P L
Sbjct: 420 VINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVL 479
Query: 471 KKFGTHTKKKE 481
+ ++ E
Sbjct: 480 AELNGPMEETE 490
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 211 bits (538), Expect = 2e-54
Identities = 136/407 (33%), Positives = 208/407 (50%), Gaps = 35/407 (8%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P + + ++ K + + + KP+PIQ + P L +DVIGIAETGSGKT AF +P
Sbjct: 311 PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLP 370
Query: 150 AINNI-----VTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKD 204
+ I ++ +++ +V++PTRELA QI + + G R + GG +
Sbjct: 371 MLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE 430
Query: 205 QQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ 263
+Q + + ++V+ATPGRL+D +E L+ NY+VLDEADRM++ GFE + ++
Sbjct: 431 EQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDA 490
Query: 264 TRSTS----------------RQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELS-- 305
S++ R T MF+AT P V LA ++ PV V+IG + +
Sbjct: 491 MPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDL 550
Query: 306 ANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGY 365
++ + + E FR ++F KK + +NL GY
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELG---------EKTAIVFVNTKKNCDSIAKNLDKAGY 601
Query: 366 DVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYV 425
V +HG SQ+QR +L F+A + N+L+ATDV RG+DIP+V VIN P +E Y
Sbjct: 602 RVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYT 661
Query: 426 HRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKK 472
HRIGRTGRAG+ G A + T + + L +L + VP EL +
Sbjct: 662 HRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELAR 708
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 211 bits (537), Expect = 2e-54
Identities = 141/397 (35%), Positives = 206/397 (51%), Gaps = 40/397 (10%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F PTPIQ + P LL G+DV+G+A TGSGKT AF +P I ++ S +S+ + L++SP
Sbjct: 89 FKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL-KSTLANSNTRALILSP 147
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR-RSQVVVATPGRLLDLIEEG 230
RELA Q + + LRS + GGV ++Q L + +VVATPGR L L E
Sbjct: 148 NRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEM 207
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
++LS + Y+V DEADR+ E GF + +I+ TSRQTL+F+AT P+ + + A + +
Sbjct: 208 KLELSSIEYVVFDEADRLFEMGFAAQLTEIL-HALPTSRQTLLFSATLPRTLVDFAKAGL 266
Query: 291 SEPVKVSIGNRDELSA--------------------------------NKRITQIVEVVD 318
+PV V + ++SA N R +I V +
Sbjct: 267 QDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNN 326
Query: 319 PFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQ 378
P + SG D L+F K V L GY V+ I+G L Q+
Sbjct: 327 PKKRKRALELALKGSESG--SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEA 384
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
R +N F+ GK NLL+ TDVA+RG+DIP + VIN FP + +VHR+GRT RAG+ G
Sbjct: 385 RLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTG 444
Query: 439 TAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGT 475
A++L ++ AG L+++ +P+ K+ T
Sbjct: 445 WAYSLVRAED---AGYLLDLQLFLNRPLVTSSKQVKT 478
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 208 bits (530), Expect = 1e-53
Identities = 123/340 (36%), Positives = 194/340 (56%), Gaps = 13/340 (3%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KPT IQ + P L G+D+IG+AETGSGKT AF +P +N ++ + + + LV++PTR
Sbjct: 46 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR---LFALVLTPTR 102
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEEGS- 231
ELA QI + L + G++S + GG+ Q L ++ +++ATPGRL+D +E
Sbjct: 103 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG 162
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+L + YLV+DEADR+L FE ++ KI++ R+T +F+AT K+V++L + +
Sbjct: 163 FNLRALKYLVMDEADRILNMDFETEVDKILKVI-PRDRKTFLFSATMTKKVQKLQRAALK 221
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
PVK ++ ++ + + K + + F+ Y + +IF
Sbjct: 222 NPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKDTYLV------YILNELAGNSFMIFCSTCN 274
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
R L+ G+ +HG +SQ +R +LN+FKA ++LLATDVA+RGLDIP+V
Sbjct: 275 NTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDV 334
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
V+N P +DY+HR+GRT RAG+ G A T T+ + L
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVEL 374
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 207 bits (528), Expect = 2e-53
Identities = 137/400 (34%), Positives = 209/400 (52%), Gaps = 25/400 (6%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F PTPIQ + P +L G++++ A TGSGKT AF +P + + +K + L+ISP
Sbjct: 77 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKG--FRALIISP 134
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGV-------PKDQQREDLRRSQVVVATPGRLL 224
TRELASQI+ LI +++ G R ++ PK ++ D ++V TP RL+
Sbjct: 135 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFD-----ILVTTPNRLI 189
Query: 225 DLIEEG--SVDLSHVNYLVLDEADRMLEKG---FEEDIKKIIRQTRSTSRQTLMFTATWP 279
L+++ +DL+ V +LV+DE+D++ E G F + + I S + MF+AT+
Sbjct: 190 YLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA 249
Query: 280 KEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTK 339
+V + + + VSIG R+ SA + + Q E++ G
Sbjct: 250 YDVEQWCKLNLDNVISVSIGARN--SAVETVEQ--ELLFVGSETGKLLAMRELVKKG--F 303
Query: 340 NDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDV 399
N VL+F + A + L Y G +V IH + +QQQR ++ F+AGK +L+ T +
Sbjct: 304 NPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTAL 363
Query: 400 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
ARG+D V VIN FP + +Y+HRIGRTGRAG G A T FTE +K L ++ NV+
Sbjct: 364 LARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVI 423
Query: 460 NGAGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKKPK 499
AG PVPE +K F K++ + +S PK
Sbjct: 424 QQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 463
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 206 bits (525), Expect = 5e-53
Identities = 126/337 (37%), Positives = 191/337 (56%), Gaps = 13/337 (3%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KP+ IQ + P+ L GKDVIG+AETGSGKT AF +P + +++ D + LV++PTR
Sbjct: 66 KPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLL---DHPQAFFCLVLTPTR 122
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEEGS- 231
ELA QI L GL + + GGV Q L RR ++VATPGRL+D +E
Sbjct: 123 ELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKG 182
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+L + +L++DEADR+L FE ++ KI++ R+T +F+AT K+V +L + +
Sbjct: 183 FNLKALKFLIMDEADRILNMDFEVELDKILKVI-PRERRTYLFSATMTKKVSKLERASLR 241
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
+P +VS+ +R + N + I P + H+G + ++F
Sbjct: 242 DPARVSVSSRYKTVDNLKQHYIFV---PNKYKETYLVYLLNEHAG----NSAIVFCATCA 294
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
++ L+ G +HG +SQ++R +LN+FK+ +L+ TDVAARGLDIP+V
Sbjct: 295 TTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDM 354
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
VIN P +DYVHR+GRT RAG+ G A T+ T+ +
Sbjct: 355 VINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYD 391
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 205 bits (522), Expect = 1e-52
Identities = 127/362 (35%), Positives = 204/362 (56%), Gaps = 8/362 (2%)
Query: 93 YLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPA 150
Y +F+ +S + K ++ + KP+PIQ+ + P L GKD+I A TGSGKT AF +P
Sbjct: 230 YENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPI 289
Query: 151 INNIVTSGDKSSSVKVLVISPTRELASQIYD-NLIVLTDACGLRSCCVYGGVPKDQQRED 209
I ++ K +S +V+V+ PTRELA Q+ D + G+ GG+ QQ +
Sbjct: 290 IERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQM 349
Query: 210 LR-RSQVVVATPGRLLDLIEEG-SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST 267
L+ R +V+ATPGR +D I S ++ V LV+DEADRMLE+GF++++ +I+ S
Sbjct: 350 LKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS- 408
Query: 268 SRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXX 327
+RQ L+F+AT +++ L S + +PV++ I + A ++TQ +
Sbjct: 409 NRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKK--AATKLTQEFVRIRKRDHLKPAL 466
Query: 328 XXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFK 387
PT ++++F K+ A R+ + G V +HG L+Q+QR ++N+FK
Sbjct: 467 LFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFK 526
Query: 388 AGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
+ +L+ TD+A+RGLDIP ++ VIN P + E Y+HR+GRT RAG+ G + T E
Sbjct: 527 NLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGES 586
Query: 448 EK 449
+
Sbjct: 587 SQ 588
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 205 bits (522), Expect = 1e-52
Identities = 135/394 (34%), Positives = 207/394 (52%), Gaps = 37/394 (9%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151
+ F Q++ QI K S + PTPIQ P L GKD+ A TG+GKT AF +P +
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
Query: 152 NNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR 211
++ +S +VLV+ PTRELA Q++ L+ L C GG+ Q LR
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267
Query: 212 RS-QVVVATPGRLLDLIEEG-SVDLSHVNY------------------------LVLDEA 245
VVVATPGRL+D + S +LS++ LVLDEA
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEA 327
Query: 246 DRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDE-- 303
DRMLE+ F + + ++IR + +RQTL+F+AT +E+ ELAS + +PVK+ I +
Sbjct: 328 DRMLEEAFRDQMNELIRLC-AQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTA 386
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363
L + +I + R + + ++F KK+ R++ L
Sbjct: 387 LKLRQEFIRIRAGRETDREAMVAALVTRTFQTN------TIVFVRTKKDCQRMQILLGLL 440
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
G V + L+Q QR ++L++FK + ++L++TD+A+RGLDI V+TVIN+ P +++
Sbjct: 441 GIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQ 500
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVN 457
Y+HR+GRT RAG+ G + +L E E+ L +VN
Sbjct: 501 YIHRVGRTARAGKAGRSISLVGEDERKLLKEIVN 534
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 204 bits (519), Expect = 3e-52
Identities = 130/346 (37%), Positives = 190/346 (54%), Gaps = 18/346 (5%)
Query: 117 PIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSS-------SVKVLVI 169
PIQA ++ +L G D++G A TG GKT AF +P + ++V KS S VLV+
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIE 228
PTRELA Q+ + + GL SCC+YGG Q L+R +VV TPGR+ D IE
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240
Query: 229 EGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTR-STSRQTLMFTATWPKEVRELAS 287
++D S++ + VLDEAD ML GF ED++ I+ + ST QTL+F+AT P V+ +++
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300
Query: 288 SFMSEPVK-VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIF 346
F+ K + + D++ A+ + I + Y SG + +IF
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSG----GQTIIF 356
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
A K + S + L + A+HG++ Q QR L F+ GK L+AT+VAARGLDI
Sbjct: 357 AETKVQVSELSGLLDGS----RALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDI 412
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLA 452
+V+ +I P VE Y+HR GRTGRAG G A TL+ ++ ++
Sbjct: 413 NDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVS 458
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 203 bits (517), Expect = 4e-52
Identities = 123/351 (35%), Positives = 197/351 (56%), Gaps = 13/351 (3%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVIS 170
K+ P+ IQ + P L GKDVIG+AETGSGKT AF +P ++ ++ + + + LV++
Sbjct: 80 KWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFA---LVLT 136
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEE 229
PTRELA QI + L G++ C V GG+ Q L ++ +++ATPGRL+D +E
Sbjct: 137 PTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLEN 196
Query: 230 -GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASS 288
+L + YLV+DEADR+L FE ++ KI++ R+T +F+AT K+V++L +
Sbjct: 197 MKGFNLKAIKYLVMDEADRILNMDFEVELDKILK-VLPRERRTFLFSATMTKKVKKLQRA 255
Query: 289 FMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFAL 348
+ +PVKV + N+ + + + + V + + +IF
Sbjct: 256 SLKDPVKVEVSNKYQTVEQLQQSYLFIPVK-------YKDVYLVHILNELAGNSFMIFCS 308
Query: 349 YKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPN 408
+ L+ G +HG +SQ +R ALN+FKA ++L++TDVA+RGLDIP+
Sbjct: 309 TCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPH 368
Query: 409 VKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
V V+N P +DY+HR+GRT RAG+ G A TL ++ + L + ++L
Sbjct: 369 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLL 419
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 202 bits (515), Expect = 7e-52
Identities = 130/357 (36%), Positives = 200/357 (55%), Gaps = 15/357 (4%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F ++ ID++ + K F PTPIQ + P +L +DVIG+A+TGSGKT AF +P I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 154 IVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RR 212
+ + S +V++PTRELA QI + + + G+RS + GG+ Q L ++
Sbjct: 108 L---WNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKK 164
Query: 213 SQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQT 271
V+V TPGRL+D +E L ++ YL++DEADR+L+ F I KI++ R+T
Sbjct: 165 PHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH-ERRT 223
Query: 272 LMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXX 331
L+F+AT +V +L + + +PV+V++ ++ S + Q + PF+
Sbjct: 224 LLFSATMTSKVEKLQRASLHQPVRVAVSSK--FSTVDTLIQRY-LFFPFKHKDTYLV--- 277
Query: 332 XYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKC 391
Y + ++IFA + R+ L+ G+ +HG LSQ R ALN+FK+G
Sbjct: 278 -YLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGAR 336
Query: 392 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
+ L+ATDVAARGLDIP V VIN P + Y+HR+GRT RAG+ G + L T+ +
Sbjct: 337 STLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYD 393
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 201 bits (512), Expect = 2e-51
Identities = 133/400 (33%), Positives = 209/400 (52%), Gaps = 21/400 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +PTPIQ P L +DV+ TGSGKT AF +P + I+ +++ +K L+ISP
Sbjct: 142 FTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDD-KQTAGLKGLIISP 200
Query: 172 TRELASQIYDNLIVLTDACGLRS---------CCVYGGVPKDQQREDLRRSQVVVATPGR 222
T+ELA+QI+ L+ L G K++ D ++ ++++TP R
Sbjct: 201 TKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSD-KKYDIIISTPLR 259
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
L+D+++ ++DLS V +L+ DEAD++ +K F E I+ R S + MF+AT P V
Sbjct: 260 LIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNV 319
Query: 283 RELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
E+A S M +PV+V IG+++ +AN I Q +++ G K
Sbjct: 320 EEIAQSIMMDPVRVIIGHKE--AANTNIEQ--KLIFCGNEEGKLIAIRQLVQEGEFK-PP 374
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
++IF A + L Y+ +V IH + + QR + + FK G+ L+ TDV AR
Sbjct: 375 IIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLAR 434
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGA 462
G+D V VIN P + + YVHRIGRTGR G+ G A T +T+Q+ ++NV+ +
Sbjct: 435 GIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQS 494
Query: 463 GQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKKPKKIT 502
G V E + K T+K++ S K+ K+ K+IT
Sbjct: 495 GCEVSEWMDKMAKMTRKEKES-----IKNGKAHKERKQIT 529
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 199 bits (506), Expect = 8e-51
Identities = 138/418 (33%), Positives = 209/418 (49%), Gaps = 26/418 (6%)
Query: 70 DIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLL 127
D + L +E TV I P F++ + + +QK ++ + K TPIQ + P +
Sbjct: 323 DAEVKLTSSEKTVG------IKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVH 376
Query: 128 AGKDVIGIAETGSGKTFAFGVPAI------NNIVTSGDKSSSVKVLVISPTRELASQIYD 181
G D++ A+TGSGKT AF +P + NN+ T+G+ + ++++PTRELA QIY+
Sbjct: 377 QGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYN 436
Query: 182 NLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYL 240
+ VYGG+ + + + + ++V T GR+ EEG++ L +
Sbjct: 437 EGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFF 496
Query: 241 VLDEADRMLEK-GFEEDIKKIIR---QTRSTSRQTLMFTATWPKEVRELASSFMSEPV-- 294
VLDEADRM++ GF DI+ I+ R +RQTLMF+AT+P V+E A +F+ E
Sbjct: 497 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 556
Query: 295 ----KVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
K+ N+ L +R + + S K ++F +
Sbjct: 557 IAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 616
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
A + L IHG Q++R++AL +F+ G +L+AT VA RGLDI V
Sbjct: 617 AMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVD 676
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
VIN P ++DY+HRIGRTGR G G A T F ++ L LV VL A Q VP+
Sbjct: 677 HVINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPD 733
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 199 bits (505), Expect = 1e-50
Identities = 128/360 (35%), Positives = 191/360 (52%), Gaps = 29/360 (8%)
Query: 111 KFPKPTPIQAVSWPYLLAGK---DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV- 166
+FP PTPIQ ++ P + K D +G+A TGSGKT AF +P + + S + S+K+
Sbjct: 193 RFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKII 252
Query: 167 -----LVISPTRELASQIYDNLIVLTDACGLRS------CCVYGGVPKDQQREDLRRS-Q 214
L+++PTREL QI +T S + GG ++ L
Sbjct: 253 DGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCD 312
Query: 215 VVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQT-----RSTSR 269
++VATPGRL+D +E + + V LVLDEAD+M++ GFE+ + I+ + + +R
Sbjct: 313 ILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNR 372
Query: 270 QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXX 329
QTLMFTAT + ++A+ +M +PV +IG E + I Q+VE D
Sbjct: 373 QTLMFTATMTPVIEKIAAGYMQKPVYATIGV--ETGSEPLIQQVVEYADNDEDKFKKLKP 430
Query: 330 XXXYHSGPTKNDKVLIFALYKKEASRV-ERNLKYNGYDVAAIHGDLSQQQRTQALNEFKA 388
+ P ++IF YK+ A + E+ K V +HG SQ+QR +L F+
Sbjct: 431 IVAKYDPP-----IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRT 485
Query: 389 GKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
K +++AT+VAARGLDIPNV V+N ++DY+HRIGRTGRA GTA + + E
Sbjct: 486 NKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAE 545
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 194 bits (493), Expect = 3e-49
Identities = 129/375 (34%), Positives = 200/375 (52%), Gaps = 36/375 (9%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+PT +Q P +L G DVI +++TGSGKT AF +P +++++ K+ S LV++PTR
Sbjct: 23 RPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLL---QKNRSFYCLVVAPTR 79
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLD-LIEEGS 231
EL+SQI + + A GLR C + GG + Q L +R VVV TPGR+ + +++ S
Sbjct: 80 ELSSQIAE-CFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKS 138
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
V VLDEADR E+ F ED++ II R RQTL+FTAT E+ +L+SS +
Sbjct: 139 FRTERVRKFVLDEADRFFEQDFVEDLETIIPSLRE-KRQTLLFTATMSDEISKLSSSILK 197
Query: 292 EPVKVSIGNRDE-----------LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN 340
P + + E ++ + + +VE+++ ++
Sbjct: 198 RPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLE------------------MSQG 239
Query: 341 DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
V++F A + L G+ A+HG+LSQ++R +A+ FK + N+L+ TD+
Sbjct: 240 MSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLG 299
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLN 460
+RGLDI +V VIN P + +DY+HR+GRT RAG+ GTA TL T+ + + L
Sbjct: 300 SRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFTLE 359
Query: 461 GAGQPVPEELKKFGT 475
+ K FGT
Sbjct: 360 KKLEEFKMMKKNFGT 374
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 193 bits (490), Expect = 6e-49
Identities = 125/357 (35%), Positives = 197/357 (55%), Gaps = 20/357 (5%)
Query: 117 PIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI---VTSGDKSSSVKVLVISPTR 173
PIQA ++ ++ +GKD+I A TG+GKTF+F +P I + + + + +VLV++PTR
Sbjct: 143 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTR 202
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSV 232
ELA+Q+ + +T L C YGG P Q E +R ++V TPGR+ D I+ G +
Sbjct: 203 ELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKL 260
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKII----RQTRSTSRQTLMFTATWPKEVRELASS 288
DL+ + ++VLDE D+ML+ GF + +++I+ ++ + QTL+F+AT P V +A
Sbjct: 261 DLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKK 320
Query: 289 FMSEPVKVS--IGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIF 346
+M + IG + + +A + + + + +SG + +IF
Sbjct: 321 YMKSTYEQVDLIGKKTQKTAIT--VEHLAIKCHWTQRAAVIGDVIRVYSG--HQGRTIIF 376
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
KKEA + +N D ++HGD+ Q+QR L F+ G +L+AT+VAARGLDI
Sbjct: 377 CETKKEAQELSQNSAIK-QDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDI 435
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAG 463
P V VI + P VE Y+HR GRTGRAG+ G + +E++ LV V AG
Sbjct: 436 PEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEY---QLVQVEQKAG 489
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 193 bits (490), Expect = 6e-49
Identities = 127/366 (34%), Positives = 193/366 (52%), Gaps = 23/366 (6%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F+++ +++ K + + P+ IQA + P+ L GKDVIG+A+TGSGKT AF +P +
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 154 IVTSGDKSSSVK---------VLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKD 204
++ S K V+SPTRELA QI + L LR + GG+ +
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 205 QQREDLRRSQVVVATPGRLLD-LIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ 263
QQ L + + VATPGRL D + + L + YLVLDEADR+L + FE+ + +I+ +
Sbjct: 131 QQTIALGK-RPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEE 189
Query: 264 TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXX 323
R+T +F+AT K+VR+L + + PVK+ A + + + + +R
Sbjct: 190 I-PLERKTFLFSATMTKKVRKLQRACLRNPVKI--------EAASKYSTVDTLKQQYRFV 240
Query: 324 XXXXXX-XXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQA 382
Y +IF + L+ G+ I G ++Q +R A
Sbjct: 241 AAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGA 300
Query: 383 LNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
LN+FKAG+CN+L+ TDVA+RGLDIP+V VIN P +DY+HR+GRT RAG+ G +
Sbjct: 301 LNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGIS 360
Query: 443 LFTEQE 448
L + E
Sbjct: 361 LVNQYE 366
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 191 bits (486), Expect = 2e-48
Identities = 131/397 (32%), Positives = 207/397 (51%), Gaps = 24/397 (6%)
Query: 87 GSNIVPYLDF-----SQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETG 139
G N+ P +D + ++Q+ + F PTPIQ + P LL + ++ A TG
Sbjct: 107 GKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTG 166
Query: 140 SGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYG 199
SGKT AF P IN + K++ ++ LV++PTRELA QIY LT GLR+ +
Sbjct: 167 SGKTLAFLTPIINGL--RAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFI-S 223
Query: 200 GVPKDQQR---EDLRRSQVVVATPGRLLDLIEEGS--VDLSHVNYLVLDEADRMLEKG-- 252
V + +Q+ E +R ++V+TP R+ L+++ +DLSHV + VLDEADR++E+G
Sbjct: 224 KVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQN 283
Query: 253 -FEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRIT 311
F+E + I + ++ F+AT+ V + A + V+++IG ++ SA + +
Sbjct: 284 NFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQN--SATETVQ 341
Query: 312 QIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIH 371
Q + V P VL+F K+ A ++ L Y+G +V IH
Sbjct: 342 QELLFVGSEGGKLVAIRDLVRQGLQPP----VLVFVQSKERAKQLFEELLYDGINVDVIH 397
Query: 372 GDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 431
+ SQ QR + F+ G +L+ T++ RG+D V VIN FP T Y+HRIGRT
Sbjct: 398 AERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRT 457
Query: 432 GRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
GRAG+ G A T FT+++ + ++ +G VPE
Sbjct: 458 GRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVPE 494
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 191 bits (484), Expect = 3e-48
Identities = 143/410 (34%), Positives = 204/410 (48%), Gaps = 26/410 (6%)
Query: 63 AASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVS 122
+ +A+ DI E T+S + D I + KE S PT IQ
Sbjct: 79 SVAAADGDIKVVTSEKVKTLSS--------FKDLCSPLLIKALGKEYSA---PTIIQKYC 127
Query: 123 WPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDN 182
P L+ G+++I A TG GKT F +P I+ + + +ISPTREL QI
Sbjct: 128 IPSLVDGRNLICRAPTGMGKTMCFLIP----IIERHRQMKKPQACIISPTRELCEQIRVE 183
Query: 183 LIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
L +R +YG K Q +VVATPGRL+DL+ VDLS + VL
Sbjct: 184 ASKLVAGSRIRVVSIYG---KKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLSEIRMFVL 240
Query: 243 DEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRD 302
DEAD++L+ GFE I++I + QT +F+AT+ ++ + + F+ E KVSI
Sbjct: 241 DEADKLLDMGFEIPIREIHGFVPKNT-QTCLFSATYSPKLTRMINYFLPED-KVSIEISS 298
Query: 303 ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGP----TKNDKVLIFALYKKEASRVER 358
E N R +IVEV + + G + DKVL+F K E VE+
Sbjct: 299 ETLKNIR-QEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEK 357
Query: 359 NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP 418
LK +G ++HGD Q R +AL F+ G+ +++AT VAARG+DI +VK VIN P
Sbjct: 358 VLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIP 417
Query: 419 LTVEDYVHRIGRTGRAGQYGTAHTLFT-EQEKHLAGALVNVLNGAGQPVP 467
+++Y+HRIGRTGR G+ G + + + L ALV VL + VP
Sbjct: 418 KDIKEYIHRIGRTGREGKSGKSISFYDGGMTADLKKALVEVLRESKNAVP 467
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 191 bits (484), Expect = 3e-48
Identities = 134/419 (31%), Positives = 211/419 (49%), Gaps = 26/419 (6%)
Query: 72 DEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAG 129
++F SD + FS+ + + ++K ++ + K TPIQ + P + G
Sbjct: 530 NKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQG 589
Query: 130 KDVIGIAETGSGKTFAFGVPAI------NNIVTSGDKSSSVKVLVISPTRELASQIYDNL 183
D++ A+TGSGKT AF +P + N++ T+G+ + ++++PTREL QIY+
Sbjct: 590 HDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEG 649
Query: 184 IVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
+ VYGG+ + + + + ++V T GR+ EEG++ L + VL
Sbjct: 650 RKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVL 709
Query: 243 DEADRMLEK-GFEEDIKKIIR---QTRSTSRQTLMFTATWPKEVRELASSFMSEP-VKVS 297
DEADRM++ GF DI I+ + +RQTLMF+AT+P V+E A + + E + ++
Sbjct: 710 DEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLA 769
Query: 298 IGNRDEL-SANKRITQIVEVVDP-------FRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
I D++ +ANK + Q E D + K ++F
Sbjct: 770 I---DKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQ 826
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
+ A + L IHG Q++R++AL +F+ G +L+AT VA RGLDI V
Sbjct: 827 RAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGV 886
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
VIN P ++DY+HRIGRTGR G G A T F ++ +L LV VL+ A Q VPE
Sbjct: 887 DHVINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPE 944
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 189 bits (481), Expect = 6e-48
Identities = 121/379 (31%), Positives = 200/379 (51%), Gaps = 29/379 (7%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
+ Q+ + K I K F +PTPIQ + P ++ GKDV+ ++ TGSGKT AF +P +
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 154 IVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS 213
+ ++ ++ L++SPTRELA Q + + L GLR C+ GG ++Q + +
Sbjct: 86 LKRRD--TTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143
Query: 214 -QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTL 272
+++ATPGRLL +I E + LS+V Y+V DEADR+ E GF++ + + +++ SRQTL
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRI-PESRQTL 202
Query: 273 MFTATWPKEVRELASSFMSEPVKVSIGNRDELS-----------ANKRITQIVEVVDPFR 321
+F+AT PK + + A + +++P+ V + +++S ++++ ++ + F
Sbjct: 203 LFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFC 262
Query: 322 XXXXXXXXXXXYHSGPTK------------NDKVLIFALYKKEASRVERNLKYNGYDVAA 369
K N + ++F K V L G D +
Sbjct: 263 FKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSF 322
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
++ L R + +F + N+L+ TDVAARG+DIP + TVINL FP + +VHR+G
Sbjct: 323 VYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVG 382
Query: 430 RTGRAGQYGTAHTLFTEQE 448
R RAG+ GTA +L E
Sbjct: 383 RVARAGRSGTAISLIANDE 401
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 189 bits (479), Expect = 1e-47
Identities = 122/331 (36%), Positives = 181/331 (53%), Gaps = 8/331 (2%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
TPIQ P +LAG+D IG A+TGSGKTFAF +P + + ++ S LV++PT EL
Sbjct: 31 TPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERL---SEEPVSHFALVLTPTHEL 87
Query: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLD-LIEEGSVD 233
A QI + +V A G+R C V GG + + + L +R +VVA PGRL D L +
Sbjct: 88 AYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFS 147
Query: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
++ YLV+DEADRML F+E + II + +RQ L F+AT ++E +S F
Sbjct: 148 FDNLKYLVVDEADRMLNGDFDESLS-IIERCLPKTRQNLFFSATMKDFIKE-SSIFPIAS 205
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
+++ + + Q + + Y +N V+IF KK
Sbjct: 206 DCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE-ENENANVMIFTNTKKYC 264
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ LK D +HG + Q++R AL+ FK+ + L+ATDVAARGLDIP+V+ V+
Sbjct: 265 QLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVM 324
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF 444
N P T ++Y+HR+GRT RAG+ G + ++F
Sbjct: 325 NHMLPRTPKEYIHRVGRTARAGRKGMSISIF 355
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 188 bits (478), Expect = 1e-47
Identities = 117/335 (34%), Positives = 179/335 (52%), Gaps = 8/335 (2%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRE 174
PTPIQ + P +L GKDV+ +A TGSGKT F +P + T ++ + + L++SPTRE
Sbjct: 119 PTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGA-RALILSPTRE 177
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVD 233
LA Q L GL++ + GG + Q L + +++ATPGRL+ + E S+
Sbjct: 178 LALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLK 237
Query: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
L V Y+V DEADR+ E GF E +++II + QT++F+AT PK + E A + ++EP
Sbjct: 238 LQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG-GHQTVLFSATLPKLLVEFARAGLTEP 296
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
V + + +L+ + + + R H+ D+ ++F K A
Sbjct: 297 VLIRLDVDTKLNEQLKTSFFL-----VREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHA 351
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ L A I+ L R L +F GKC+ L+ TD+AARGLDIP + VI
Sbjct: 352 EYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVI 411
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
N +FP + ++HR+GR RAG+ GTA++L E
Sbjct: 412 NYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 188 bits (478), Expect = 1e-47
Identities = 133/411 (32%), Positives = 206/411 (49%), Gaps = 23/411 (5%)
Query: 86 SGSNIVPYL-DFSQVS-------FIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAE 137
SG+NI P L F+++S +I + E+ F +PTPIQ + P LL+G++ A
Sbjct: 128 SGNNIPPPLKSFAELSSRYGCEGYILRNLAELG-FKEPTPIQRQAIPILLSGRECFACAP 186
Query: 138 TGSGKTFAFGVPAINNIVTSGDKSSS--VKVLVISPTRELASQIYDNLIVLTDACGLRSC 195
TGSGKTFAF P + + + S+ ++ +++SP RELA+Q L
Sbjct: 187 TGSGKTFAFICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIR 246
Query: 196 CVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEE 255
+ + K L V+++TP RL I+ +DLS V YLVLDE+D++ E+ +
Sbjct: 247 LMTKPLVKTADFSKLW-CDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLK 305
Query: 256 DIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVE 315
I +++ + S +F+AT P V ELA S M + V+V IG ++ S + +
Sbjct: 306 QIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLV-- 363
Query: 316 VVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLS 375
F + N VLIF K+ A + LK IH DL
Sbjct: 364 ----FAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLP 419
Query: 376 QQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
+R A+++F+AG+ +L+ATDV ARG+D + VIN FP + Y+HRIGR+GRAG
Sbjct: 420 PGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAG 479
Query: 436 QYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE-----ELKKFGTHTKKKE 481
+ G A T +TEQ+ + N + +G VP + KK+ H +++
Sbjct: 480 RSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRD 530
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 187 bits (474), Expect = 4e-47
Identities = 124/346 (35%), Positives = 189/346 (53%), Gaps = 23/346 (6%)
Query: 117 PIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD---KSSSVKVLVISPTR 173
PIQ ++ + GKD+I A TG+GKTF+F +P I + + + KS S KVLV++PTR
Sbjct: 162 PIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTR 221
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSV 232
ELA+Q+ + +T L C YGG Q +R ++V TPGR+ D ++ G +
Sbjct: 222 ELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRL 279
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR----QTLMFTATWPKEVRELASS 288
DLS + ++VLDE D+ML+ GF E ++ II ++ T QTL+F+AT P+ V ++A
Sbjct: 280 DLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKK 339
Query: 289 FMS---EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
+M E V + +G + +A + + + + +SG + +I
Sbjct: 340 YMKSRYEQVDL-VGKMTQKAATT--VEHLAIQCHWSQRPAVIGDVLQVYSG--SEGRAII 394
Query: 346 FALYKKEASRVERN--LKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
F KK + + N +K N +HGD++Q QR L F+ G +L+AT+VAARG
Sbjct: 395 FCETKKNVTEMAMNPHIKQNAQ---CLHGDIAQSQREITLKGFREGSFKVLVATNVAARG 451
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
LDIP V VI + P VE Y+HR GRTGRAG+ G + +E+
Sbjct: 452 LDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRER 497
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 186 bits (472), Expect = 7e-47
Identities = 122/371 (32%), Positives = 196/371 (51%), Gaps = 19/371 (5%)
Query: 76 KENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVI 133
K++ TV S + F ++ + + + I F KP+ IQ + P +L +DVI
Sbjct: 8 KDDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVI 67
Query: 134 GIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLR 193
A++G+GKT F + + ++ T + + L++SPTRELA QI ++ L D ++
Sbjct: 68 AQAQSGTGKTATFSISVLQSLDT---QVRETQALILSPTRELAVQIQKVVLALGDYMNVQ 124
Query: 194 SCCVYGGVPKDQQREDLRR----SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRML 249
GG ED+R+ VV TPGR+ D+I ++ + LVLDEAD ML
Sbjct: 125 CHACIGGT---NLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEML 181
Query: 250 EKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKR 309
KGF+E + I R Q ++ +AT P E+ E+ S FM++P+++ + RDEL+ +
Sbjct: 182 NKGFKEQLYDIYRYL-PPGAQVVLLSATLPHEILEMTSKFMTDPIRILV-KRDELTL-EG 238
Query: 310 ITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAA 369
I Q VD R Y + + ++F +++ + +K + V++
Sbjct: 239 IKQFFVAVD--REEWKFDTLIDLYDT--LTITQAVLFCNTRRKVDWLTDKMKEANFTVSS 294
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
+HGD+ Q+ R + + EF+AG +L++TDV ARGLD+P V VIN P E Y+HRIG
Sbjct: 295 MHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIG 354
Query: 430 RTGRAGQYGTA 440
R+GR G+ G A
Sbjct: 355 RSGRFGRKGVA 365
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 186 bits (472), Expect = 7e-47
Identities = 120/357 (33%), Positives = 186/357 (51%), Gaps = 9/357 (2%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRE 174
PTPIQ + P +L+G DV+ +A TGSGKT AF +P + + + V+ L++SPTR+
Sbjct: 51 PTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGG-VRALILSPTRD 109
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE-GSV 232
LA Q L LR + GG + Q E+L + V++ATPGRL+ L+ E +
Sbjct: 110 LAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDM 169
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
L V Y+V DEAD + GF E + +I+ Q S +RQTL+F+AT P + E A + + E
Sbjct: 170 TLRTVEYVVFDEADSLFGMGFAEQLHQILTQL-SENRQTLLFSATLPSALAEFAKAGLRE 228
Query: 293 PVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKE 352
P V + +++S + +++ + R + + + LIF K
Sbjct: 229 PQLVRLDVENKISPDLKLSFLT-----VRPEEKYSALLYLVREHISSDQQTLIFVSTKHH 283
Query: 353 ASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTV 412
V K + + +GD+ Q R ++ F+A K LL+ TD+AARG+DIP + V
Sbjct: 284 VEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNV 343
Query: 413 INLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEE 469
IN FP + +VHR+GR RAG+ G A++ T ++ L L+ +P P E
Sbjct: 344 INWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTE 400
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 185 bits (470), Expect = 1e-46
Identities = 125/346 (36%), Positives = 179/346 (51%), Gaps = 20/346 (5%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KPTP+Q P +LAG+DV+G+A+TGSGKT AF +P ++ + + V LV++PTR
Sbjct: 80 KPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRL---AEDPYGVFALVVTPTR 136
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEEG-- 230
ELA Q+ + L LR + GG+ Q L R +V+ TPGR+ L+E
Sbjct: 137 ELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPD 196
Query: 231 -SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
S +LVLDEADR+L+ GF+++++ I Q SRQTL+F+AT ++ L
Sbjct: 197 VPPVFSRTKFLVLDEADRVLDVGFQDELRTIF-QCLPKSRQTLLFSATMTSNLQAL---- 251
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK----VLI 345
++ S A + + + + F H DK +I
Sbjct: 252 ----LEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMI 307
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F + R+ L + A+H SQ R AL++FK+GK +LLATDVA+RGLD
Sbjct: 308 FVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLD 367
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
IP V VIN P DYVHR+GRT RAG+ G A ++ TE + L
Sbjct: 368 IPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKL 413
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 185 bits (469), Expect = 2e-46
Identities = 128/422 (30%), Positives = 207/422 (48%), Gaps = 22/422 (5%)
Query: 72 DEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAG 129
D+F + VS I P FS +++ + + + + TPIQ + P + G
Sbjct: 276 DKFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADG 335
Query: 130 KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV------KVLVISPTRELASQIYDNL 183
KD++ A+TGSGKT AF +P ++ ++ D + + ++++PTRELA QIY+
Sbjct: 336 KDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEG 395
Query: 184 IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
+ + VYGG+ + + + ++V T GR+ E+G++ L YLVL
Sbjct: 396 RKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVL 455
Query: 243 DEADRMLEK-GFEEDIKKIIR---QTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI 298
DEADRM++ GF +I++II ++ RQT+MF+AT+P V+E A + E +
Sbjct: 456 DEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMIT 515
Query: 299 GNRDELSANKRITQIVEVVDP-------FRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
++ +ANK + Q E+ D + + K ++F +K
Sbjct: 516 IDKIG-AANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQK 574
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
A + + IHG Q++R+ AL F++G +L+AT V RGLDI V
Sbjct: 575 MADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDH 634
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFT-EQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P ++DY+HRIGRTGR G G A + + + + LV L A Q VP +
Sbjct: 635 VINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWM 694
Query: 471 KK 472
K+
Sbjct: 695 KE 696
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 180 bits (457), Expect = 4e-45
Identities = 123/404 (30%), Positives = 210/404 (51%), Gaps = 20/404 (4%)
Query: 77 ENEVTVSDPSGSNIVPYLDFSQV--SFID-QIQKEISK------FPKPTPIQAVSWPYLL 127
+N+V VS ++ + ++ QV SF D ++++E+ + F KP+ IQ +
Sbjct: 5 KNDVNVSSVVDADGLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCT 64
Query: 128 AGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLT 187
GKDVI A++G+GKT F V + I + V+ LV++PTRELA QI + L
Sbjct: 65 TGKDVIAQAQSGTGKTATFSVSILQRI---DHEDPHVQALVMAPTRELAQQIQKVMSALG 121
Query: 188 DACGLRSC-CVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEAD 246
+ + C+ G +D QR+ VVV TPGR+ D+I ++D S + VLDEAD
Sbjct: 122 EYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEAD 181
Query: 247 RMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSA 306
ML +GF++ I ++ R + Q ++ +AT P EV ++ + FM P+++ + +DEL+
Sbjct: 182 EMLSRGFKDQIYEVFR-SMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILV-KKDELTL 239
Query: 307 NKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYD 366
+ I Q ++ + Y+ + +IF +++ + + N +
Sbjct: 240 -EGIRQF--YINVQKDEWKFDCLCDLYN--VVNVTQAVIFCNTRRKVDTLTEKMTENQFT 294
Query: 367 VAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVH 426
V+ +HGD+ Q +R + EF++G +L+ TD+ ARG+D+ V VIN P E+Y+H
Sbjct: 295 VSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIH 354
Query: 427 RIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
RIGR+GR G+ G A TE + + + + +PE +
Sbjct: 355 RIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESI 398
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 180 bits (456), Expect = 5e-45
Identities = 124/392 (31%), Positives = 208/392 (52%), Gaps = 25/392 (6%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV------ 164
K +PTPIQ S+ ++ G DV+ A TGSGKT AF +P + ++ +K V
Sbjct: 755 KMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPS 814
Query: 165 -KVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR---RSQVVVATP 220
++L+++PTREL +Q + LT GL+ +GG ++ + LR + ++VAT
Sbjct: 815 PRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATM 874
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKG-FEEDIKKIIRQTRSTSRQTLMFTATWP 279
GRL D + G V LS + Y+VLDEADRM++ F E++ KII ++QT++F+A++
Sbjct: 875 GRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFS 934
Query: 280 KEVR-ELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP-------FRXXXXXXXXXX 331
++++ + F+ E + ++ +AN++I Q + V ++
Sbjct: 935 EDLQSDDLPKFVKEGYTMLQVDKFG-TANEKIDQKILPVPRTEKRDAIYKLLGIDENTVT 993
Query: 332 XYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKC 391
P + K LIF K + + G ++H +Q+QR + L++F+ GK
Sbjct: 994 LLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKY 1053
Query: 392 NLLLATDVAARGLDIPNVKTVINLTFP--LTVEDYVHRIGRTGRAGQYGTAHTLF--TEQ 447
++A++V ARGL+I + V+N P ++YV+RIGRTGRAG GT+ T F E
Sbjct: 1054 QCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTS-TAFVDVEN 1112
Query: 448 EKHLAGALVNVLNGAGQPVPEELKKFGTHTKK 479
+ + LV++LN A + VPE L + H ++
Sbjct: 1113 DTDIIPCLVSILNEAKKEVPEWLTEGAGHQEE 1144
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 179 bits (455), Expect = 7e-45
Identities = 114/333 (34%), Positives = 183/333 (54%), Gaps = 17/333 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ S ++ G+DVI A++G+GKT F + + ++ T+ +VL +SP
Sbjct: 46 FEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTT---LRETQVLCLSP 102
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR----SQVVVATPGRLLDLI 227
TRELA QI ++ L D ++ GG ED+R+ +V TPGR+ D+I
Sbjct: 103 TRELAVQIQKVILALGDMMNVQCHVCIGGT---NLGEDIRKLDYGQHIVSGTPGRVFDMI 159
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+ + + LVLDEAD ML KGF+E I + R + Q ++ +AT P E+ E+ S
Sbjct: 160 KRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT-QVVLISATLPHEILEMTS 218
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM++P+++ + RDEL+ + I Q V+ R Y + + +IF
Sbjct: 219 KFMTDPIRILV-KRDELTL-EGIKQFFVAVE--REEWKFDTLCDLYDT--LTITQAVIFC 272
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
K++ + ++ + V+++HGD+ Q++R + + EF+AG+ +L+ TDV ARG+D+
Sbjct: 273 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQ 332
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
V VIN P E Y+HRIGR+GR G+ G A
Sbjct: 333 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 365
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 179 bits (454), Expect = 9e-45
Identities = 115/364 (31%), Positives = 191/364 (51%), Gaps = 20/364 (5%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KP+PIQ S P L+G+D++ A+ G+GK+ A+ +P + + K +++ +VI PTR
Sbjct: 107 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIVPTR 163
Query: 174 ELASQIYDNLIVLTDACG-LRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLIE 228
ELA Q+ I ++ G + GG R+D+ R VV+ATPGR+LDLI+
Sbjct: 164 ELALQVSQICIQVSKHMGGAKVMATTGGT---NLRDDIMRLDDTVHVVIATPGRILDLIK 220
Query: 229 EGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASS 288
+G + HV +VLDEAD++L + F + ++ II T +RQ L+++AT+P V++ +S
Sbjct: 221 KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIIL-TLPKNRQILLYSATFPLSVQKFMNS 279
Query: 289 FMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFAL 348
+ +P ++++ +EL+ K +TQ V + + +IF
Sbjct: 280 HLQKPYEINL--MEELTL-KGVTQYYAYVTERQKVHCLNTLFSRLQINQS-----IIFCN 331
Query: 349 YKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPN 408
+ + + + GY IH + Q+ R + ++F+ G C L+ TD+ RG+DI
Sbjct: 332 SSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQA 391
Query: 409 VKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
V VIN FP E Y+HRIGR+GR G G A L T ++ ++ L +P+P
Sbjct: 392 VNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPS 451
Query: 469 ELKK 472
+ K
Sbjct: 452 NIDK 455
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 179 bits (453), Expect = 1e-44
Identities = 115/341 (33%), Positives = 190/341 (54%), Gaps = 14/341 (4%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ IQ+ + +++GKDVI A++G+GKT F + + I + ++ L++SP
Sbjct: 43 FEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL---RKKDLQALILSP 99
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRLLDLIEE 229
TRELASQI + L D + + + GG + D ++ Q V TPGR+LD+I++
Sbjct: 100 TRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKK 159
Query: 230 GSVDLSHVNYLVLDEADRMLEK--GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+ +V LVLDEAD +L + GF++ I I + Q ++ +AT K++ E+
Sbjct: 160 QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC-QVVVVSATMNKDILEVTR 218
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM++PVK+ + RDE+S + I Q V VD + Y S + +IF
Sbjct: 219 KFMNDPVKILV-KRDEISL-EGIKQYVVNVD--KEEWKFDTLCDIYDS--LTITQCVIFC 272
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
KK+ + + L + + V ++HGD+ Q++R + +N+F+ G +L++TDV ARG+D+
Sbjct: 273 NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQ 332
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
V VIN P +E+Y+HRIGR+GR G+ G A T+ +
Sbjct: 333 QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKAD 373
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 179 bits (453), Expect = 1e-44
Identities = 111/330 (33%), Positives = 180/330 (53%), Gaps = 11/330 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + ++ G+DVI +++G+GKT F + + + + + L+++P
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---QVRETQALILAP 114
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVA-TPGRLLDLIEEG 230
TRELA QI L+ L D ++ GG + L Q VVA TPGR+ D+I
Sbjct: 115 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 174
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
S+ + LVLDEAD ML KGF+E I + R + Q ++ +AT P E+ E+ + FM
Sbjct: 175 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT-QVVLISATLPHEILEMTNKFM 233
Query: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
++P+++ + RDEL+ + I Q V+ R Y + + +IF K
Sbjct: 234 TDPIRILV-KRDELTL-EGIKQFFVAVE--REEWKFDTLCDLYDT--LTITQAVIFCNTK 287
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
++ + ++ + V+++HGD+ Q++R + EF++G +L++TDV ARGLD+P V
Sbjct: 288 RKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 347
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
+IN P E Y+HRIGR+GR G+ G A
Sbjct: 348 LIINYDLPNNRELYIHRIGRSGRYGRKGVA 377
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 178 bits (451), Expect = 2e-44
Identities = 115/367 (31%), Positives = 194/367 (52%), Gaps = 25/367 (6%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS---SSVKVLV 168
F TPIQ+ + P +++G+DVIGI++TGSGKT ++ +P + + S + L+
Sbjct: 276 FGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLI 335
Query: 169 ISPTRELASQIYDNLIVLTDA-CGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDL 226
++PTRELA QI++ + T+A +RS C GG +Q DL+R +++VVATPGR +D+
Sbjct: 336 LAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDI 395
Query: 227 I--EEGSV-DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVR 283
+ +G + + ++V+DEADR+ + GFE I +I++ R +Q ++F+AT+P ++R
Sbjct: 396 LTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRP-DKQCVLFSATFPNKLR 454
Query: 284 ELASSFMSEPVKVSIGNRDELSAN------------KRITQIVEVVDPFRXXXXXXXXXX 331
A + P+ ++I ++ ++ N ++ +V+++
Sbjct: 455 SFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSEN 514
Query: 332 XYHSGPTK--NDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAG 389
S + + K +IF + + + L G AIH Q+R L +FK
Sbjct: 515 DGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKRE 574
Query: 390 KCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
K ++LL T+V +RGL++P V VI T YVH GRT R + GTA TL E
Sbjct: 575 KNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDE- 633
Query: 450 HLAGALV 456
L+GA +
Sbjct: 634 -LSGAYI 639
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 178 bits (451), Expect = 2e-44
Identities = 135/391 (34%), Positives = 194/391 (49%), Gaps = 22/391 (5%)
Query: 87 GSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTF 144
G I+ + F + +Q I + F T IQA S LL GKDV+G A TGSGKT
Sbjct: 82 GKGIMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTL 141
Query: 145 AFGVPAINNIVTSG-DKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPK 203
AF +PA+ + + V+VI PTRELA Q + L V GG
Sbjct: 142 AFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGG--- 198
Query: 204 DQQREDLRR----SQVVVATPGRLLDLIEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIK 258
+ +R + +R S +V+ATPGRLLD ++ + H+ LV+DEADR+LE+ FEED+
Sbjct: 199 NNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMN 258
Query: 259 KIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVD 318
KI++ T RQT +F+AT +V++LA ++ PV V + + N+ + Q VV
Sbjct: 259 KILKILPKT-RQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVP 317
Query: 319 PFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQ 378
+ N K+++F K +K + DV+ IHG + Q +
Sbjct: 318 SKQRLILLISFLKK-----NLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNR 372
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA-GQY 437
RT+ +F K +LL TDVAARGLDIP+V +I P +Y+HR+GRT R G
Sbjct: 373 RTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAK 432
Query: 438 GTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
G A + +E + L A PV E
Sbjct: 433 GKALLVLIPEELQ----FIRYLKAAKVPVKE 459
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 177 bits (450), Expect = 3e-44
Identities = 136/411 (33%), Positives = 200/411 (48%), Gaps = 20/411 (4%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAV 121
A + + ++++ KE E + + S I+ F +S D K I + F + T IQA
Sbjct: 129 AKSEEEEVED--KEEEKKLEETS---IMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 122 SWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV-TSGDKSSSVKVLVISPTRELASQIY 180
+ P L+ G+DV+G A TGSGKT AF +PA+ + + VLVI PTRELA Q Y
Sbjct: 184 AIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSY 243
Query: 181 DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE-GSVDLSHVN 238
L V GG + + E L + ++VATPGRLLD +E ++
Sbjct: 244 GVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLK 303
Query: 239 YLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI 298
+LV+DEADR+LE+ FEED+KKI+ T RQT +F+AT +V +LA ++ PV + +
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILNLLPKT-RQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
Query: 299 GNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVER 358
+ N+ + Q VV + K+++F K
Sbjct: 363 DEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQG----KKKIMVFFSTCKSTKFHAE 418
Query: 359 NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP 418
+Y +D I G + Q +RT +F + +LL T+VAARGLD P+V ++ P
Sbjct: 419 LFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPP 478
Query: 419 LTVEDYVHRIGRTGRA-GQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
DY+HR+GRT R G G A + T QE + L A PV E
Sbjct: 479 DNPTDYIHRVGRTARGEGAKGKALLVLTPQEL----KFIQYLKAAKIPVEE 525
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 177 bits (449), Expect = 3e-44
Identities = 111/337 (32%), Positives = 180/337 (52%), Gaps = 10/337 (2%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +P+ IQ + ++ G DV+ A++G+GKT F + A+ I TS + + L+++P
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLAP 98
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS 231
TRELA QI ++ L ++ GG + E LR +Q+VV TPGR+ D I+
Sbjct: 99 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR 158
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+ +LDEAD ML GF+E I +I T+ Q ++ +AT P +V E+ + FM
Sbjct: 159 FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT-QVVLLSATMPNDVLEVTTKFMR 217
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
PV++ + +DEL+ + I Q V+ Y S + +IF ++
Sbjct: 218 NPVRILV-KKDELTL-EGIKQFYVNVE--EEEYKYECLTDLYDS--ISVTQAVIFCNTRR 271
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+ + L+ + + V+AI+ DL QQ+R + EF++G +L++TD+ ARG+D+ V
Sbjct: 272 KVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 331
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
VIN P E+Y+HRIGR GR G+ G A T ++
Sbjct: 332 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 177 bits (449), Expect = 3e-44
Identities = 111/337 (32%), Positives = 180/337 (52%), Gaps = 10/337 (2%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +P+ IQ + ++ G DV+ A++G+GKT F + A+ I TS + + L+++P
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLAP 98
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS 231
TRELA QI ++ L ++ GG + E LR +Q+VV TPGR+ D I+
Sbjct: 99 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR 158
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+ +LDEAD ML GF+E I +I T+ Q ++ +AT P +V E+ + FM
Sbjct: 159 FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT-QVVLLSATMPNDVLEVTTKFMR 217
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
PV++ + +DEL+ + I Q V+ Y S + +IF ++
Sbjct: 218 NPVRILV-KKDELTL-EGIKQFYVNVE--EEEYKYECLTDLYDS--ISVTQAVIFCNTRR 271
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+ + L+ + + V+AI+ DL QQ+R + EF++G +L++TD+ ARG+D+ V
Sbjct: 272 KVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 331
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
VIN P E+Y+HRIGR GR G+ G A T ++
Sbjct: 332 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 176 bits (446), Expect = 7e-44
Identities = 122/430 (28%), Positives = 211/430 (48%), Gaps = 55/430 (12%)
Query: 68 QSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLL 127
+ D++E+ N + + + P S++ ++ I+++ F +PTPIQ + P +L
Sbjct: 117 EDDVNEYFSTNNLEKTKHKKGSF-PSFGLSKI-VLNNIKRK--GFRQPTPIQRKTIPLIL 172
Query: 128 AGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLT 187
+D++G+A TGSGKT AF +P + + + K + + +++SP+RELA Q ++
Sbjct: 173 QSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGA-RAVILSPSRELAMQTFNVFKDFA 231
Query: 188 DACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEAD 246
LRS + GG ++Q + + V++ATPGR L L E ++DL V Y+V DEAD
Sbjct: 232 RGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEAD 291
Query: 247 RMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP------------- 293
R+ E GF+E + +++ T+RQTL+F+AT P + + + + P
Sbjct: 292 RLFEMGFQEQLNELLASL-PTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSE 350
Query: 294 -------------------------VKVSIGNRDEL-----SANKRITQIVEVVDPFRXX 323
+K+ + ++L S N+ + + D +
Sbjct: 351 NLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKR 410
Query: 324 XXXXXXXXXYHSGPTKND-----KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQ 378
P N+ ++F + + + L+ GY ++ I+G L Q
Sbjct: 411 RNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHA 470
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
R + L F+AG ++L+ TDVAARG+DIP + VIN T P + + +VHR+GRT RAG G
Sbjct: 471 RKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKG 530
Query: 439 TAHTLFTEQE 448
A+++ E E
Sbjct: 531 WAYSIVAENE 540
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 176 bits (445), Expect = 1e-43
Identities = 139/390 (35%), Positives = 202/390 (51%), Gaps = 24/390 (6%)
Query: 68 QSDIDEFLKENE-------VTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPI 118
+S+ +E ENE V ++ S S+I FS + + IQK I + F T I
Sbjct: 59 ESESEELDNENEDERVQKSVNLNASSTSDIEK---FSDLQLSENIQKAIKEMGFETMTEI 115
Query: 119 QAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS-SSVKVLVISPTRELAS 177
Q S P LLAG+DV+G A+TGSGKT AF +P I + K + V++ISPTRELA
Sbjct: 116 QKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELAL 175
Query: 178 QIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIE--EGSVDL 234
QI+ L V GG + + + L + ++VATPGRLLD ++ +G V
Sbjct: 176 QIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-F 234
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS-SFMSEP 293
++ LV+DEADR+LE GFE+++++I++ S +RQTL+F+AT +V +LA S P
Sbjct: 235 RNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGP 294
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
+ V++ + S + + Q VVD + KV++F
Sbjct: 295 LYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKR-----NLKKKVIVFMSSCASV 349
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ L Y V +HG QQ+RT EF + +LL T+VAARGLDIP V ++
Sbjct: 350 KYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIV 409
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTL 443
P DY+HR+GRT R G GT +L
Sbjct: 410 QYDPPDDPRDYIHRVGRTAR-GTKGTGKSL 438
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 176 bits (445), Expect = 1e-43
Identities = 109/358 (30%), Positives = 187/358 (51%), Gaps = 12/358 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + + G DVI A++G+GKT F + + I + + LV++P
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---LKATQALVLAP 108
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRLLDLIEE 229
TRELA QI ++ L D G GG V + Q+ + ++V TPGR+ D++
Sbjct: 109 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR 168
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+ ++ VLDEAD ML +GF++ I I ++ S + Q ++ +AT P +V E+ F
Sbjct: 169 RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT-QVVLLSATMPSDVLEVTKKF 227
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
M +P+++ + ++EL+ + I Q V+ R Y + + +IF
Sbjct: 228 MRDPIRILV-KKEELTL-EGIRQFYINVE--REEWKLDTLCDLYET--LTITQAVIFINT 281
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
+++ + + + V+A+HGD+ Q++R + EF++G +L+ TD+ ARG+D+ V
Sbjct: 282 RRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 341
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
VIN P E+Y+HRIGR GR G+ G A + TE++K + N + + +P
Sbjct: 342 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 399
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 175 bits (444), Expect = 1e-43
Identities = 126/401 (31%), Positives = 201/401 (49%), Gaps = 16/401 (3%)
Query: 86 SGSNIV-PYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTF 144
+G+N V P +F + + ++K+ + T IQ + P + + +D++ A TGSGKT
Sbjct: 41 TGNNPVDPIEEFPEGILCENLKKQ--NITECTTIQRYAIPTIGSKRDLLACAPTGSGKTI 98
Query: 145 AFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKD 204
A+ P + + + ++++PTREL QIY L+ L+ + K
Sbjct: 99 AYLFPILQKLQLH--VPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKI 156
Query: 205 QQREDLRRSQ--VVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIR 262
Q++ R + + + TP RL+ I+ G + V + V+DEADR+ E GF E I+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHILS 215
Query: 263 QTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRX 322
S++ +F+AT P V ELA +P+++ +G +D +A I Q + V
Sbjct: 216 ACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKD--AATDSIDQRLLFVGS--D 271
Query: 323 XXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQA 382
+G K +V+IF + A + L ++ V IHG+L Q +R +A
Sbjct: 272 TSKIVILRQMISNGELK-PRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEA 330
Query: 383 LNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
L +F+ G+ +L+ATD+ ARG+D VK VIN FP +V Y+HRIGRTGRAG G A T
Sbjct: 331 LAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVT 390
Query: 443 LFTEQEKHLAGALVNVLNGAGQPVPE---ELKKFGTHTKKK 480
FT+++ + V+ +G VP L K KKK
Sbjct: 391 FFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKK 431
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 175 bits (444), Expect = 1e-43
Identities = 111/358 (31%), Positives = 184/358 (51%), Gaps = 12/358 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + + G DVI A++G+GKT F + + + + + LV++P
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI---EFKETQALVLAP 109
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRLLDLIEE 229
TRELA QI ++ L D G GG V + Q+ +VV TPGR+ D++
Sbjct: 110 TRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 169
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+ + VLDEAD ML +GF++ I +I Q +TS Q + +AT P +V E+ F
Sbjct: 170 RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIF-QKLNTSIQVVFASATMPTDVLEVTKKF 228
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
M +P+++ + ++EL+ + I Q V+ R Y + + +IF
Sbjct: 229 MRDPIRILV-KKEELTL-EGIKQFYINVE--REEWKLDTLCDLYET--LTITQAVIFLNT 282
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
+++ + + + V+A+HGD+ Q++R + EF++G +L+ TD+ ARG+D+ V
Sbjct: 283 RRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 342
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
VIN P E+Y+HRIGR GR G+ G A TE++K + + N + +P
Sbjct: 343 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 175 bits (443), Expect = 2e-43
Identities = 115/357 (32%), Positives = 192/357 (53%), Gaps = 19/357 (5%)
Query: 90 IVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFG 147
I P F+ + + + + + + F KP+ IQ + +L G+DVI A++G+GKT
Sbjct: 31 IEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIA 90
Query: 148 VPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR 207
+ + TS S V+ L++SPTRELA+Q + + +++ GG +
Sbjct: 91 LSVCQVVDTS---SREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGG---NSVG 144
Query: 208 EDLRRSQ----VVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ 263
ED+R+ + VV TPGR+ D+I+ S+ + L+LDE+D ML +GF++ I + R
Sbjct: 145 EDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRY 204
Query: 264 TRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXX 323
Q + +AT P E+ E+ S FM+EPVK+ + RDEL+ + I Q V+ +
Sbjct: 205 L-PPDLQVCLVSATLPHEILEMTSKFMTEPVKILV-KRDELTL-EGIKQFFVAVE--KEE 259
Query: 324 XXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQAL 383
Y + + +IF K++ + ++ + + V+++HGD+ Q++R +
Sbjct: 260 WKFDTLCDLYDT--LTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIM 317
Query: 384 NEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
NEF++G +L+ TDV ARG+D+ V VIN P E Y+HRIGR+GR G+ G A
Sbjct: 318 NEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 374
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 175 bits (443), Expect = 2e-43
Identities = 120/352 (34%), Positives = 187/352 (53%), Gaps = 11/352 (3%)
Query: 104 QIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS 161
++ K I+K + PTPIQ + P +L G+DV+ +A+TGSGKT F +P + + +
Sbjct: 105 ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRR-EPT 163
Query: 162 SSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATP 220
+ L++SPTRELA Q Y + L L+S V GG D Q + V+VATP
Sbjct: 164 KGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATP 223
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPK 280
GR L L E + L+ + Y+V DEADR+ E GF E + + + + S SRQT+MF+AT PK
Sbjct: 224 GRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS-SRQTVMFSATLPK 282
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN 340
+ E A + +++PV + + +L + + D + P ++
Sbjct: 283 LLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPD----DRYTALVVLLKYVIPVQS 338
Query: 341 DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
V +FA + + L G A+++ L R +F K ++L+ TDVA
Sbjct: 339 QTV-VFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVA 397
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF-TEQEKHL 451
ARG+DIP++ V+NL FP + +VHR+GR RAG+ GTA+++ T+ HL
Sbjct: 398 ARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 449
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 174 bits (442), Expect = 2e-43
Identities = 122/352 (34%), Positives = 180/352 (50%), Gaps = 17/352 (4%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+PT IQ +L G++ IG A+TGSGKT AF +P I S + L+++PTR
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK---WSKDPSGIFALILTPTR 85
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLI----E 228
ELA QI + L L+ + GG+ +Q DL +R VVVATPGRL DLI E
Sbjct: 86 ELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGE 145
Query: 229 EGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIR-QTRSTSRQTLMFTATWPKEVREL-- 285
E L + +LV+DEADR+L F +D+ S RQTL+FTAT +R+L
Sbjct: 146 ETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKY 205
Query: 286 -ASSFMSEPVKVSIGNRDELSANKRITQ-IVEVVDPFRXXXXXXXXXXXYHSGPTKNDKV 343
P+ + D +S + Q + V R ++
Sbjct: 206 QPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENA----KKSA 261
Query: 344 LIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
+IF + A + L+ V +H ++ Q++R +L F+A +L+ATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGAL 455
LDIP+V+ VIN P +DY+HR+GRT RAG+ G + ++ TE++ L A+
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAI 373
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 174 bits (440), Expect = 4e-43
Identities = 122/358 (34%), Positives = 183/358 (51%), Gaps = 18/358 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK-----V 166
F T +Q + P +L GKDV+ A+TG+GKT AF +PAI ++ S S + V
Sbjct: 379 FETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIV 438
Query: 167 LVISPTRELASQIY---DNLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPG 221
LV+ PTRELASQ + L+ + G++ V GG +P +Q+R Q++VATPG
Sbjct: 439 LVVCPTRELASQAAAEANTLLKYHPSIGVQ--VVIGGTKLPTEQRRMQTNPCQILVATPG 496
Query: 222 RLLDLIEEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATW 278
RL D IE S L V LVLDEAD +L+ GF DI++II RQT +F+AT
Sbjct: 497 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPK-QRQTFLFSATV 555
Query: 279 PKEVRELASSFMSEPVK-VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGP 337
P+EVR++ + + ++ ++++TQ+ + R H
Sbjct: 556 PEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKE-HIAD 614
Query: 338 TKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLAT 397
+ KV+IF V L +V IH Q RT+ +EF+ K +L+ +
Sbjct: 615 NVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTS 674
Query: 398 DVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGAL 455
DV+ARG+D P+V V+ + P E Y+HR+GRTGR G+ G L E++ ++
Sbjct: 675 DVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSV 732
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 173 bits (439), Expect = 5e-43
Identities = 111/356 (31%), Positives = 182/356 (50%), Gaps = 13/356 (3%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+P+PIQ + P L+GKDV+ A+ G+GKT A+ +P + I + D ++ LV+ PTR
Sbjct: 79 RPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDY---IQALVMVPTR 135
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGG-VPKDQQREDLRRSQVVVATPGRLLDLIEEGSV 232
ELA Q I L +R GG + KD ++ Q+++ATPGR+LDL+++
Sbjct: 136 ELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVA 195
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
D+SH LVLDEAD++L F+ + +I + Q L+F+AT+P V+ + E
Sbjct: 196 DMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDP-QILLFSATFPLTVKNFMEKHLRE 254
Query: 293 PVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKE 352
P ++++ +EL+ K +TQ V + + +IF +
Sbjct: 255 PYEINL--MEELTL-KGVTQYYAFVQERQKVHCLNTLFSKLQINQS-----IIFCNSTQR 306
Query: 353 ASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTV 412
+ + + GY IH ++Q R + ++F+ G C L+ +D+ RG+D+ V V
Sbjct: 307 VELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVV 366
Query: 413 INLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
IN FP E Y+HRIGR+GR G G A L T +++ + L +P+P+
Sbjct: 367 INFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPK 422
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 173 bits (438), Expect = 6e-43
Identities = 139/431 (32%), Positives = 210/431 (48%), Gaps = 15/431 (3%)
Query: 72 DEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAG 129
DE++ EN T D I F + D K + S F K T IQA S P L G
Sbjct: 20 DEYI-ENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQG 78
Query: 130 KDVIGIAETGSGKTFAFGVPAINNIVTSG-DKSSSVKVLVISPTRELASQIYDNLIVLTD 188
DV+ A+TGSGKT AF VP I + + + L+ISPTRELA QIY+ L +
Sbjct: 79 HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGS 138
Query: 189 ACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG-SVDLSHVNYLVLDEADR 247
+ V GG + E + R +++ TPGR+L +++ ++ S++ LVLDEADR
Sbjct: 139 HTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADR 198
Query: 248 MLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSAN 307
L+ GF++ + I+ T S SRQTL+F+AT + V +LA +++ V + + S N
Sbjct: 199 CLDMGFKKTLDAIV-STLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVN 257
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN--DKVLIFALYKKEASRVERNLK--YN 363
K + E + F S + K+++F K+ V +
Sbjct: 258 KEAST-PETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQP 316
Query: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
G + +HG Q+ RT+ L++F + L ATDV ARG+D P V V+ + P V+
Sbjct: 317 GISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDT 376
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKEHS 483
Y+HR+GR R G+ G + + T QE+ A + LN A + P +L + K +
Sbjct: 377 YIHRVGRCARYGKKGKSLIMLTPQEQE---AFLKRLN-ARKIEPGKLNIKQSKKKSIKPQ 432
Query: 484 AYGAFFKDVDL 494
FKD +L
Sbjct: 433 LQSLLFKDPEL 443
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 173 bits (438), Expect = 6e-43
Identities = 108/357 (30%), Positives = 185/357 (51%), Gaps = 11/357 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +P+ IQ + +L +DV+ A++G+GKT F + + I TS + L+++P
Sbjct: 39 FERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS---LKQCQALILAP 95
Query: 172 TRELASQIYDNLIVLTDACGLRS-CCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
TRELA QI ++ L D + C+ G + +D VVV TPGR+ D+I+
Sbjct: 96 TRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRR 155
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
++ V VLDEAD ML +GF++ I I + T+ Q ++ +AT P++V E+ + FM
Sbjct: 156 ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA-QVVLLSATMPQDVLEVTTKFM 214
Query: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
+P+++ + +DEL+ + I Q V+ + Y + + +IF +
Sbjct: 215 RDPIRILV-KKDELTL-EGIKQFYVAVE--KEEWKLDTLCDLYETVTVT--QAVIFCNTR 268
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
++ + L + V+++HGD+ Q QR ++EF+ G +L+ TD+ ARG+D+ V
Sbjct: 269 RKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVS 328
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
VIN P E+Y+HRIGR GR G+ G + T + + + N + +P
Sbjct: 329 LVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMP 385
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 173 bits (438), Expect = 6e-43
Identities = 110/359 (30%), Positives = 180/359 (49%), Gaps = 19/359 (5%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KP+PIQ S L G+D++ A+ G+GKT A+ +P I I + +++ +VI PTR
Sbjct: 65 KPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPA---LKAIQAMVIVPTR 121
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLIEE 229
ELA Q + L+ L+ GG R+D+ R +V+ATPGR+LDL+E+
Sbjct: 122 ELALQTSQICVELSKHIQLKVMVTTGGT---DLRDDIMRLNGTVHLVIATPGRILDLMEK 178
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
G + H LVLDEAD++L + F+ + ++I RQ ++++AT+P V
Sbjct: 179 GVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPK-ERQVMLYSATFPNTVTSFMQKH 237
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
M +P ++++ +EL+ +TQ V + + +IF
Sbjct: 238 MHKPYEINL--MEELTL-LGVTQYYAFVQEKQKVHCLNTLFRKLQINQS-----IIFCNS 289
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
+ + + + GY IH ++Q R + ++F+ G C L+ +D+ RG+DI V
Sbjct: 290 TQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAV 349
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPE 468
VIN FP E Y+HRIGR+GR G G A L T +++H + L +P+P+
Sbjct: 350 NVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPK 408
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 172 bits (435), Expect = 1e-42
Identities = 109/342 (31%), Positives = 175/342 (50%), Gaps = 19/342 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+PIQ + P + G+D++ A+ G+GKT AF +P + + K + ++ L++ P
Sbjct: 66 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---KLNKIQALIMVP 122
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLI 227
TRELA Q + L CG+ GG R+D+ R ++V TPGR+LDL
Sbjct: 123 TRELALQTSQVVRTLGKHCGISCMVTTGGT---NLRDDILRLNETVHILVGTPGRVLDLA 179
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
DLS + ++DEAD+ML + F+ I++I+ T Q+L+F+AT+P V+E
Sbjct: 180 SRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT-HQSLLFSATFPLTVKEFMV 238
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ +P ++++ +EL+ K ITQ V+ + ++ +IF
Sbjct: 239 KHLHKPYEINL--MEELTL-KGITQYYAFVEERQKLHCLNTLFSKLQI-----NQAIIFC 290
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+ + + GY H + QQ+R + +EF+ GK L+ +D+ RG+DI
Sbjct: 291 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 350
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
V VIN FP T E Y+HRIGR+GR G G A L ++
Sbjct: 351 AVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 392
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 172 bits (435), Expect = 1e-42
Identities = 125/402 (31%), Positives = 203/402 (50%), Gaps = 26/402 (6%)
Query: 61 SFAASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPI 118
S + + + +EF E + G ++ + FS ++ +SK F KP PI
Sbjct: 92 SLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFS---LSPEMLGSLSKAGFSKPMPI 148
Query: 119 QAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQ 178
Q++ P G D+IG A+TGSGKT AFG+P + + + + D + V+ LV++PTRELA Q
Sbjct: 149 QSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVD-AKYVQALVVAPTRELAHQ 207
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSV--DLS 235
I + ++ + +R + GG+ +Q+ L + VVVATPGRL +I E ++ +
Sbjct: 208 ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK 267
Query: 236 HVNYLVLDEADRMLEKGFEEDIKKIIR---QTRSTSRQTLMFTATWPKEVRELASSFM-- 290
+ LVLDEADR+L+K E++ K++ T RQT +F+AT+ + +++ M
Sbjct: 268 KIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKG 327
Query: 291 ------SEPVKVSI------GNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPT 338
+ P++ + G L AN + V++ Y+
Sbjct: 328 NITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMR 387
Query: 339 KNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATD 398
K ++FA ++ R+ L +H L Q++R Q+L +FK +L+ TD
Sbjct: 388 YPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 399 VAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
VAARG+DIP+V VI+ P T + YVHR GRT RA + G +
Sbjct: 448 VAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVS 489
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 172 bits (435), Expect = 1e-42
Identities = 121/369 (32%), Positives = 179/369 (47%), Gaps = 19/369 (5%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS-SSVKVLVISPTRE 174
T IQ P L G+D++G A+TGSGKT AF VP I N+ S + LVISPTRE
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRE 122
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG-SVD 233
LA Q ++ L+ + + + GG +++E L R ++V TPGRLL I++ + D
Sbjct: 123 LAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHIDQAVNFD 182
Query: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
S + L+LDEADR+L+ GF + I+ + RQT++F+AT K V++LA + P
Sbjct: 183 TSGLQMLILDEADRILDMGFRTTLDAIV-SSLPVHRQTMLFSATQTKSVKDLARLSLQNP 241
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
+S+ D S + Q V P H K ++F K+
Sbjct: 242 DFISVHENDTSSTPSNLNQFYLTV-PLTEKLDILFGFIRTHL----KFKTIVFLSSCKQV 296
Query: 354 SRVERNLKYN--GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
V + G + +HG Q RT+ +F + + +L TD+ ARGLD P V
Sbjct: 297 RFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDW 356
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE---------KHLAGALVNVLNGA 462
VI L P V+ Y+HR+GRT R + G A L E K +A +NV +G
Sbjct: 357 VIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLESKKIAVERINVKDGK 416
Query: 463 GQPVPEELK 471
+ +L+
Sbjct: 417 KTSIRNQLQ 425
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 170 bits (431), Expect = 4e-42
Identities = 121/356 (33%), Positives = 183/356 (50%), Gaps = 13/356 (3%)
Query: 85 PSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGK 142
P G F ++ K I K F T +QA + P LLAG+DV+G A+TGSGK
Sbjct: 33 PEGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGK 92
Query: 143 TFAFGVPAINNIVTSGDKS-SSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGV 201
T AF +PAI + + K + ++VI+PTRELA QI+ L + V GG
Sbjct: 93 TLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGA 152
Query: 202 PKDQQREDLRRS-QVVVATPGRLLDLIE--EGSVDLSHVNYLVLDEADRMLEKGFEEDIK 258
+ Q+ E L + +++ATPGRLLD ++ +G V ++ L++DEADR+LE GFE++++
Sbjct: 153 NRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFV-FKNLKALIIDEADRILEIGFEDEMR 211
Query: 259 KIIRQTRSTSRQTLMFTATWPKEVRELAS-SFMSEPVKVSIGNRDELSANKRITQIVEVV 317
+II+ + RQ+++F+AT +V +LA S P+ +++ + S + Q V
Sbjct: 212 QIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVC 271
Query: 318 DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQ 377
D + + K+++F L Y V +HG QQ
Sbjct: 272 DSDKRFLLLFSFLKR-----NQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 326
Query: 378 QRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 433
+RT EF + +L+ TDVAARGLDIP V +I P DY+HR+GRT R
Sbjct: 327 KRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR 382
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 169 bits (429), Expect = 7e-42
Identities = 123/359 (34%), Positives = 178/359 (49%), Gaps = 14/359 (3%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVIS 170
K +PT IQ P +L G+D IG A+TGSGKT AF P + S D S V V++
Sbjct: 21 KITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK--WSEDPSGMFGV-VLT 77
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEE 229
PTRELA QI + L + +R + GG QQ DL R+ ++ATPGRL I
Sbjct: 78 PTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMS 137
Query: 230 GSVD----LSHVNYLVLDEADRMLEKGFEEDIKKIIRQ-TRSTSRQTLMFTATWPKEVRE 284
D L YLVLDEAD +L F + + I RQTL+FTAT +V+
Sbjct: 138 SGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVKS 197
Query: 285 LASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYH---SGPTKND 341
L ++ + + + E N I +++ + Y +N
Sbjct: 198 LQNAPVQKGKPPLFAYQVESVDNVAIPSTLKI--EYILVPEHVKEAYLYQLLTCEEYENK 255
Query: 342 KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAA 401
+IF A + R LK VA++H + QQ+RT +L+ F+A +L+ATDVA+
Sbjct: 256 TAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVAS 315
Query: 402 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLN 460
RGLDIP V+ V+N P + ++HR GRT RAG+ G A + T+++ A+ + +N
Sbjct: 316 RGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRIN 374
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 169 bits (429), Expect = 7e-42
Identities = 116/360 (32%), Positives = 181/360 (50%), Gaps = 11/360 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ G DVI A++G+GKT F + + S + LV++P
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS---LVQCQALVLAP 117
Query: 172 TRELASQIYDNLIVLTDACGLRS-CCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
TRELA QI + L D G+++ CV G ++ QR VVV TPGR+ DL+
Sbjct: 118 TRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQ 177
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
S+ + VLDEAD ML +GF++ I I Q + Q +F+AT P E E+ FM
Sbjct: 178 SLRADAIKMFVLDEADEMLSRGFKDQIYDIF-QLLPSKVQVGVFSATMPPEALEITRKFM 236
Query: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
++PV++ + RDEL+ + I Q VD + Y + +IF +
Sbjct: 237 NKPVRILV-KRDELTL-EGIKQFYVNVD--KEEWKLETLCDLYETLAITQS--VIFVNTR 290
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
++ + ++ + V+A HGD+ Q R + EF++G +L+ TD+ ARG+D+ V
Sbjct: 291 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 350
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P E+Y+HRIGR+GR G+ G A T +++ + + N + +P +
Sbjct: 351 LVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSNV 410
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 169 bits (427), Expect = 1e-41
Identities = 124/369 (33%), Positives = 201/369 (53%), Gaps = 24/369 (6%)
Query: 104 QIQKEISK--FPKPTPIQAVSWPYLLAGKD--VIGIAETGSGKTFAFGVPAINNIV-TSG 158
+I K I++ FP TP+Q + +L+ +D VI A+TG+GKTFAF +P +++ T
Sbjct: 116 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 175
Query: 159 DKSSSVKVLVISPTRELASQIYDNLIVLTDA-CGLRS-CCV--YGGVP--KDQQREDLRR 212
D VK ++++PTR+LA QI + + D GL+ CV GG + + R
Sbjct: 176 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 235
Query: 213 SQVVVATPGRLLDLIEEGSVDLSH-VNYLVLDEADRMLEKGFEEDIKKI---IRQTRSTS 268
+V+ATPGRL+D++E+ S V+Y VLDEADR+LE GF +D++ I + + S S
Sbjct: 236 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 295
Query: 269 R---QTLMFTATWPKEVRELASSFMS--EPVKVSIGNRDELSANKRITQIVEVVDPFRXX 323
+TL+F+AT +V++LA++ M+ E + + +++E A++RI Q V + + F
Sbjct: 296 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 355
Query: 324 XXXXXXXXXYH-SGPTKNDKVLIFALYKKEAS---RVERNLKYNGYDVAAIHGDLSQQQR 379
N K +IFA K S + +N + HG ++Q +R
Sbjct: 356 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 415
Query: 380 TQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGT 439
T + FK + +L+ TDV ARG+D PNV V+ + P + +Y+HRIGRT R+G+ G+
Sbjct: 416 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 475
Query: 440 AHTLFTEQE 448
+ + E
Sbjct: 476 SVLFICKDE 484
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 168 bits (426), Expect = 2e-41
Identities = 116/349 (33%), Positives = 177/349 (50%), Gaps = 14/349 (4%)
Query: 136 AETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSC 195
A TG+GKT AF +P + + + L+++PTRELA QI + L L+
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVD---PYGIYALILTPTRELAFQIAEQFTALGKPITLKCS 246
Query: 196 CVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEEGSVDLSHV----NYLVLDEADRMLE 250
+ GG Q +L R VVVATPGRL DLIE ++ V + VLDEADRMLE
Sbjct: 247 VIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLE 306
Query: 251 KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRI 310
+ + +K I ++ S RQTL+ +AT + L +P +D+ S R+
Sbjct: 307 GQYNDQLKPIF-ESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRL 365
Query: 311 TQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAI 370
Q VV P +S V+IFA +E + + G+ V ++
Sbjct: 366 EQKY-VVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSL 424
Query: 371 HGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGR 430
H + Q+QR AL+ F++ +++ TDVA+RGLDIP+V V+N P + Y+HR+GR
Sbjct: 425 HSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGR 484
Query: 431 TGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKK 479
+ RAG++G+A + T+ + L A+ V+ G+ + +ELK H K
Sbjct: 485 SARAGRFGSALSFVTQYDVELLQAVEQVI---GKKL-DELKVSPKHVTK 529
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 168 bits (425), Expect = 2e-41
Identities = 117/356 (32%), Positives = 188/356 (51%), Gaps = 17/356 (4%)
Query: 90 IVPYLDFSQVSFIDQIQKEISKF--PKPTPIQAVSWPYLLAGKDVIGIAETGSGKT--FA 145
I P F + D++ + + + KP+ IQ + +L G+DVI A++G+GKT A
Sbjct: 18 IKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIA 77
Query: 146 FGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQ 205
V I NI S V+VLV+SP+RELASQ + + +++ GG +
Sbjct: 78 ISVCQIVNI-----SSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGE 132
Query: 206 QREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQT 264
+ L R V TPGR+ D+I+ GS+ V LVLDE+D ML KG ++ I + R
Sbjct: 133 DIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL 192
Query: 265 RSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXX 324
Q + +AT P+E+ E+ FM++PV++ + DEL+ + I Q VD +
Sbjct: 193 PHDI-QVCLISATLPQEILEMTEKFMTDPVRILV-KPDELTL-EGIKQYYVDVD--KEEW 247
Query: 325 XXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALN 384
Y G ++ +IF +++ + ++ + + V+++HGD Q++R +N
Sbjct: 248 KFDTLCDLY--GRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMN 305
Query: 385 EFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
+F++ K +L+A+DV ARG+D+ V VIN P E Y+HRIGR GR G+ G A
Sbjct: 306 QFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVA 361
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 168 bits (425), Expect = 2e-41
Identities = 107/344 (31%), Positives = 184/344 (53%), Gaps = 17/344 (4%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + + G+DVI A++G+GKT F + + I TS + L+++P
Sbjct: 36 FEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTS---IRECQALILAP 92
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLI 227
TRELA+QI ++ L + + S GG RED R + VVV TPGR+ D+I
Sbjct: 93 TRELATQIQRVVMALGEYMKVHSHACIGGT---NVREDARILESGCHVVVGTPGRVYDMI 149
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+ ++ VLDEAD ML +GF++ I+ + + Q ++ +AT P +V E++
Sbjct: 150 NRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKML-PPDVQVILLSATMPPDVLEVSR 208
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM +PV + + ++EL+ + I Q V+ + Y + + +IF
Sbjct: 209 CFMRDPVSILV-KKEELTL-EGIKQF--YVNVKQENWKLGTLCDLYDT--LSITQSVIFC 262
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+++ ++ + + + + V+A+HGD+ Q+ R + +F++G +L+ TD+ ARG+D+
Sbjct: 263 NTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQ 322
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
V VIN P E+Y+HRIGR GR G+ G A T+ ++ +
Sbjct: 323 QVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRI 366
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 167 bits (422), Expect = 4e-41
Identities = 112/364 (30%), Positives = 181/364 (48%), Gaps = 14/364 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG-DKSSSVKVLVIS 170
+ KPT IQ + Y L G DV+G A+TGSGKT A +P + + + + L+IS
Sbjct: 96 YTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIIS 155
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
PTRELA Q + + + G V GG +R + ++V TPGRLL ++E
Sbjct: 156 PTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDEN 215
Query: 231 S-VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+ + + LVLDEADRML+ GF + + II + RQTL+F+AT + V++L
Sbjct: 216 AQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPA-ERQTLLFSATQTRNVKDLCRVC 274
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
++PV VS+ + + Q +V+ + + K L+F
Sbjct: 275 TNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAH-----RKKKSLVFVSS 329
Query: 350 KKEASRVERNLKY--NGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
K+A + G V + G ++Q++R + +F K +L+ATDVA+RGLD
Sbjct: 330 CKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFE 389
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
++ VI + P ++DY+HR+GR+ R G + + + ++ A++ L P+
Sbjct: 390 HIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEE---AMIGKLEKHSIPI- 445
Query: 468 EELK 471
EELK
Sbjct: 446 EELK 449
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 166 bits (419), Expect = 1e-40
Identities = 109/380 (28%), Positives = 196/380 (50%), Gaps = 17/380 (4%)
Query: 72 DEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTP--IQAVSWPYLLAG 129
DE ++ E+T S+ ++ F +++ + + + I + TP +Q+ + + G
Sbjct: 3 DEIMENVELTTSE----DVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
Query: 130 KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDA 189
+DVI A++G+GKT F + + +I S + L++SPTRELA QI + ++ L D
Sbjct: 59 RDVIAQAQSGTGKTATFSIGILQSIDLS---VRDTQALILSPTRELAVQIQNVVLALGDH 115
Query: 190 CGLRSCCVYGGVPKDQQREDLRRSQVVVA-TPGRLLDLIEEGSVDLSHVNYLVLDEADRM 248
++ GG + L Q VV+ TPGR+ D+I ++ +V L+LDEAD +
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADEL 175
Query: 249 LEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANK 308
L +GF+E I I R Q ++ +AT P++V E+ + F + PV++ + RDEL+
Sbjct: 176 LNQGFKEQIYDIYRYL-PPGTQVVVVSATLPQDVLEMTNKFTTNPVRILV-KRDELTLEG 233
Query: 309 RITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVA 368
+ V + Y + + +IF +++ + ++ + V
Sbjct: 234 LKQYFIAVE---KEEWKFDTLCDLYDT--LTITQAVIFCNSRRKVDWLTEKMREANFTVT 288
Query: 369 AIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI 428
++HG++ Q++R + +F+ G +L+ TD+ ARG+D+ V VIN P E+Y+HRI
Sbjct: 289 SMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRI 348
Query: 429 GRTGRAGQYGTAHTLFTEQE 448
GR+GR G+ G A T ++
Sbjct: 349 GRSGRFGRKGVAINFVTNED 368
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 166 bits (419), Expect = 1e-40
Identities = 115/360 (31%), Positives = 181/360 (49%), Gaps = 11/360 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ G DVI A++G+GKT F + + S + LV++P
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS---LIQCQALVLAP 115
Query: 172 TRELASQIYDNLIVLTDACGLR-SCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
TRELA QI + L D G++ CV G ++ QR VVV TPGR+ D+++
Sbjct: 116 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQ 175
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
S+ ++ VLDEAD ML +GF++ I I Q Q +F+AT P E E+ FM
Sbjct: 176 SLRADNIKMFVLDEADEMLSRGFKDQIYDIF-QLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
S+PV++ + RDEL+ + I Q V+ + Y + + +IF +
Sbjct: 235 SKPVRILV-KRDELTL-EGIKQFYVNVE--KEEWKLETLCDLYET--LAITQSVIFVNTR 288
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
++ + ++ + V+A HGD+ Q R + EF++G +L+ TD+ ARG+D+ V
Sbjct: 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 348
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P E+Y+HRIGR+GR G+ G A T ++ + + N + +P +
Sbjct: 349 LVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNV 408
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 166 bits (419), Expect = 1e-40
Identities = 111/365 (30%), Positives = 178/365 (48%), Gaps = 19/365 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+PIQ S P L G D++ A+ G+GKT AF +P + I +++ ++ +++ P
Sbjct: 174 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI---DPENNVIQAVILVP 230
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS----QVVVATPGRLLDLI 227
TRELA Q L+ + GG R+D+ R ++V TPGR+LDL
Sbjct: 231 TRELALQTSQVCKELSKYLKIEVMVTTGGT---SLRDDIMRLYQPVHLLVGTPGRILDLA 287
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
++G L LV+DEAD++L F+ I+++I Q SRQ LMF+AT+P V+
Sbjct: 288 KKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELI-QFLPESRQILMFSATFPVTVKSFKD 346
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
++ +P +++ ++ L +TQ V+ + + +IF
Sbjct: 347 RYLKKPYIINLMDQLTLMG---VTQYYAFVEERQKVHCLNTLFSKLQINQS-----IIFC 398
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+ + + GY IH + Q R + ++F+ G C L+ TD+ RG+DI
Sbjct: 399 NSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 458
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
V VIN FP T E Y+HR+GR+GR G G A L T +++ L +P+P
Sbjct: 459 AVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIP 518
Query: 468 EELKK 472
+ K
Sbjct: 519 SLIDK 523
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 165 bits (417), Expect = 2e-40
Identities = 119/354 (33%), Positives = 184/354 (51%), Gaps = 18/354 (5%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTS-----GDKSSSVKVLVIS 170
T +Q + P +L GKDV+ A+TG+GKT AF +P+I +V S +K + LVI
Sbjct: 78 TVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVIC 137
Query: 171 PTRELASQIY---DNLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRLLD 225
PTRELA+Q + L+ + G++ V GG + +Q+R Q++VATPGRL D
Sbjct: 138 PTRELANQAATEANTLLKYHPSIGVQ--VVIGGTRLGLEQKRMQTNPCQILVATPGRLKD 195
Query: 226 LIEEG---SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
IE + L V LVLDEAD +L+ GF +DI++II RQT +F+AT P+EV
Sbjct: 196 HIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPK-ERQTFLFSATVPEEV 254
Query: 283 RELASSFMSEPVK-VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKND 341
R++ + + V+ + + ++++ Q+ + R + G +
Sbjct: 255 RQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNV-DY 313
Query: 342 KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAA 401
KV++F V L +V IH Q RT+ NEF+ K +L+ +DV+A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 402 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGAL 455
RG+D P+V V+ + P E Y+HR+GRTGR G+ G L E++ +L
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSL 427
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 164 bits (414), Expect = 4e-40
Identities = 126/376 (33%), Positives = 188/376 (49%), Gaps = 67/376 (17%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGK--------------------TFAFGVPAI 151
+ KPTPIQ P +D+ A TGSGK T AF +P +
Sbjct: 187 YKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTL 244
Query: 152 NNIVTSGDKSSSVKVLVISPTRELASQIY---DNLIVLTD-ACGLRSCCVYGGVPKDQQR 207
++ + + +VL+++PTRELA QI+ NL TD CGL + GG+ +Q
Sbjct: 245 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGL----IVGGLSVREQE 300
Query: 208 EDLR-RSQVVVATPGRLLDLIEEG-SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTR 265
LR +VVATPGR++D + SVDL + L+LDEADR+L+ GF +I +++R
Sbjct: 301 VVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLC- 359
Query: 266 STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXX 325
RQT++F+AT +EV+EL +++P+++S + SA + E + F
Sbjct: 360 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA----DPSARRPPGLTEEYLREFFVPSC 415
Query: 326 XXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQ---- 381
K+ A R++ G A +HG+L+Q QR
Sbjct: 416 ASGT--------------------KQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNL 455
Query: 382 ------ALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
+L F+ + + L+ATDVAARGLDI V+TVIN P ++ YVHR+GRT RAG
Sbjct: 456 GTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAG 515
Query: 436 QYGTAHTLFTEQEKHL 451
+ G A T T+ ++ L
Sbjct: 516 REGYAVTFVTDSDRSL 531
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 164 bits (414), Expect = 4e-40
Identities = 109/363 (30%), Positives = 176/363 (48%), Gaps = 19/363 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+PIQ S P L G D++ A+ G+GKT AF +P + I ++ ++ +++ P
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI---DPNNNVIQAMILVP 200
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLI 227
TRELA Q L+ ++ GG R+D+ R ++V TPGR+LDL
Sbjct: 201 TRELALQTSQVCKELSKYLNIQVMVTTGGT---SLRDDIMRLHQPVHLLVGTPGRILDLT 257
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
++G L LV+DEAD++L F+ ++++I Q +RQ LMF+AT+P V+
Sbjct: 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI-QFLPQNRQFLMFSATFPVTVKAFKD 316
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ +P +++ ++ L +TQ V+ + + +IF
Sbjct: 317 RHLRKPYVINLMDQLTLMG---VTQYYAFVEERQKVHCLNTLFSKLQINQS-----IIFC 368
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+ + + GY IH + Q R + +EF+ G C L+ TD+ RG+DI
Sbjct: 369 NSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQ 428
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
V VIN FP T E Y+HR+GR+GR G G A L T +++ L +P+P
Sbjct: 429 AVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIP 488
Query: 468 EEL 470
+
Sbjct: 489 SNI 491
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 163 bits (412), Expect = 6e-40
Identities = 108/363 (29%), Positives = 177/363 (48%), Gaps = 19/363 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +P+PIQ S P L+G+D++ A+ G+GKT AF +P++ + T K S ++ L++ P
Sbjct: 64 FERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDT---KKSKIQTLILVP 120
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLI 227
TRELA Q L ++ GG R+D+ R +VV TPGR+LDL
Sbjct: 121 TRELALQTSQVCKTLGKHMNVKVMVTTGGTTL---RDDIIRLNDTVHIVVGTPGRVLDLA 177
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+G D S V+DEAD++L F I++++ +RQ +++AT+P V+
Sbjct: 178 GKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPK-NRQISLYSATFPLIVKNFMD 236
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+++P ++++ DEL+ + +TQ VD + + +IF
Sbjct: 237 KHLNKPYEINL--MDELTL-RGVTQYYAFVDESQKVHCLNTLFSKLQINQS-----IIFC 288
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+ + + GY H + Q R + + F+ G C L+ +D+ RG+DI
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQ 348
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVP 467
V VIN FP E Y+HRIGR+GR G G A + + ++ + N L QP+P
Sbjct: 349 AVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIP 408
Query: 468 EEL 470
+
Sbjct: 409 PSI 411
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 161 bits (408), Expect = 2e-39
Identities = 132/445 (29%), Positives = 210/445 (46%), Gaps = 67/445 (15%)
Query: 70 DIDE-FLKEN----EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWP 124
D+DE LKEN ++ + D S N+ + + + +S + F +PT IQ S P
Sbjct: 144 DVDEDVLKENVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP 203
Query: 125 YLLAGKDVIGIAETGSGKTFAFGVPAINNIVTS-GDKSSSVKVLVISPTRELASQIYDNL 183
++ G DV+G A TGSGKT A+G+P + ++++ K+ L+ +PTRELA Q+ D+L
Sbjct: 204 VIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHL 263
Query: 184 IVLTDACGLRS----CCVYGGVPKDQQREDLR---RSQVVVATPGRLLDLIEEGSV---D 233
+ + +S + GG+ +Q+ L+ Q+V+ATPGR L+L+E+ +
Sbjct: 264 KKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKR 323
Query: 234 LSHVNYLVLDEADRMLEKGFEEDIKKII-------RQTRSTSR------QTLMFTATWPK 280
S VN L+LDEADR+L+ G ++ +KII R+ R S QTL+F+AT+
Sbjct: 324 FSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSI 383
Query: 281 EVRELASSFMSEPVKVSIGNRDELSA---------NKRITQIVEVVDPFRXXXXXXXXXX 331
++ + SS + N DEL+A + ++ +P
Sbjct: 384 DLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNP-ESKVSSQIKES 442
Query: 332 XYHSGPTKND------------KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQR 379
P + D LIF ++ L G IH ++Q+ R
Sbjct: 443 LIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNR 502
Query: 380 TQALNEFKAGKC----------------NLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
++L FK +L+A+DVAARGLDIP V+ VI+ P + +
Sbjct: 503 LKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDI 562
Query: 424 YVHRIGRTGRAGQYGTAHTLFTEQE 448
Y+HR GRT RAG G + + + QE
Sbjct: 563 YIHRSGRTARAGSEGVSAMICSPQE 587
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 161 bits (408), Expect = 2e-39
Identities = 124/383 (32%), Positives = 192/383 (49%), Gaps = 19/383 (4%)
Query: 96 FSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F+Q + QK + SKF PT +Q S L GKDV+G A TGSGKT AF +P + +
Sbjct: 74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEH 133
Query: 154 I-VTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR 212
+ + ++ V ++ISPTRELA QI++ L + + + GG +R + +
Sbjct: 134 LFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ 193
Query: 213 SQVVVATPGRLLDLIEEGSV-DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQT 271
+++ TPGRLL ++E + + S + LVLDEADR L+ GF++ + II RQT
Sbjct: 194 CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPV-RQT 252
Query: 272 LMFTATWPKEVRELASSFMSEPVKVSIGN---RDELSA------NKRITQIVEVVDPFRX 322
L+F+AT V++LA + +PV V G R+E SA N + + E++
Sbjct: 253 LLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYV 312
Query: 323 XXXXXXXXXXYHSGPTKN--DKVLIFALYKKEASRV-ERNLKYN-GYDVAAIHGDLSQQQ 378
S + K+++F K+A + E K G + A++G L Q +
Sbjct: 313 VLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDR 372
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
R +F ++ +TDVA+RGLD P V V+ L P V Y+HR GR+ R G
Sbjct: 373 RIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRG 432
Query: 439 TAHTLFT-EQEKHLAGALVNVLN 460
+ T +E+++ AL LN
Sbjct: 433 ECLLVLTPSEEEYMISALKEQLN 455
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 161 bits (407), Expect = 2e-39
Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 16/325 (4%)
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
D++ A++G+GKT F V A+ N+ +SS ++ ++++PTRE++ QI + + +
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENL---DSRSSHIQKVIVTPTREISVQIKETVRKVAPT- 106
Query: 191 GLRSCCVYGGVPKDQQREDLR--RSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRM 248
G R+ GG DL+ R Q+V+ TPGR+ L++ G++++SHV++ VLDEAD++
Sbjct: 107 GARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKL 166
Query: 249 LEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANK 308
+++ F +DI II RQ +F+AT+P+ + L S+F+ + V N D++
Sbjct: 167 MDEVFRDDINIIINSLPQI-RQVAVFSATYPRNLDNLLSTFLRDAALVRF-NADDVQLFG 224
Query: 309 RITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVA 368
+V P Y + L+F + + +LK +G DV
Sbjct: 225 IKQYVVAKCSPMLEKLTHVLKSIRYV-------QALVFCDQISKCEPIATHLKSSGLDVT 277
Query: 369 AIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI 428
+ +SQ+ R A+++ +A + +L+++D+ ARG+D NV V+N+ E Y HRI
Sbjct: 278 FVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRI 337
Query: 429 GRTGRAGQYGTAHTLFTEQEKHLAG 453
GR R G +G A TL E E+ L G
Sbjct: 338 GRAARFGAHGAAVTLL-EDERALKG 361
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 161 bits (407), Expect = 2e-39
Identities = 98/249 (39%), Positives = 146/249 (58%), Gaps = 10/249 (4%)
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQ---TLMFTATWPKEVR 283
+++G + + YLVLDEADRML+ GFE I++I+ R S++ T MF+AT+PKE++
Sbjct: 1 MDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQ 60
Query: 284 ELASSFMSEP-VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
LA F+ E V +++G S N + +IV V + + S T
Sbjct: 61 LLAQDFLKENYVFLAVGRVGSTSENI-MQKIVWVEEDEKRSYLMDLLDATGDSSLT---- 115
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
L+F K+ AS + L Y+V IHGDL Q +R + L+ F+ G +L+AT VAAR
Sbjct: 116 -LVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAAR 174
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGA 462
GLDIPNVK VIN P V++YVHRIGRTGR G G A + F ++ +++A L++++ A
Sbjct: 175 GLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEA 234
Query: 463 GQPVPEELK 471
Q +P+ L+
Sbjct: 235 NQELPDWLE 243
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 160 bits (406), Expect = 3e-39
Identities = 112/341 (32%), Positives = 180/341 (51%), Gaps = 14/341 (4%)
Query: 92 PYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVP 149
P +DF S + + + K + PTPIQ P L G+D++ A+TGSGKT AF +P
Sbjct: 201 PIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP 260
Query: 150 AINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACG-LRSCCVYGGVPKDQQRE 208
I + +S + L+++PTRELA QI L +++ + GG+P Q
Sbjct: 261 VIMRALF---ESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLY 317
Query: 209 DLRRS-QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST 267
L++ +V++ATPGRLLD+I++ SV+L V +V+DEAD ML+ GF++ + I+ +
Sbjct: 318 RLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPND 377
Query: 268 SRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXX 327
QT++ +AT P + +LAS + PV++ G ++ AN R I+ V DP +
Sbjct: 378 C-QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVR-QIILWVEDPAKKKKLFE 435
Query: 328 XXXXXYHSGPTKNDKVLIFALYKKEASRV-ERNLKYNGYDVAAIHGDLSQQQRTQALNEF 386
P VL+F K A + E K G +IH + SQ +R L
Sbjct: 436 ILNDKKLFKP----PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGL 491
Query: 387 KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 427
G ++++T V RGLD+ +V+ V+N P ++++YVH+
Sbjct: 492 LEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 160 bits (405), Expect = 4e-39
Identities = 117/344 (34%), Positives = 176/344 (51%), Gaps = 11/344 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS-SSVKVLVIS 170
F T IQA S LL GKDV+ A+TGSGKT AF +PAI + K + V+++S
Sbjct: 88 FTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVS 147
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE 229
PTREL+ Q Y L L + L V GG + +++ L + ++VATPGRLLD ++
Sbjct: 148 PTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQN 207
Query: 230 GSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS- 287
L ++ L++DEADR+L+ GFE ++++++R RQ+++F+AT +V EL
Sbjct: 208 TDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPK-QRQSMLFSATHSPKVDELVKL 266
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ S PV+VS+ + E + + + Q V + K KV++F
Sbjct: 267 ALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKK-----NKTKKVMVFF 321
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
L Y +IHG QQ+RT +F + +LL TDVAARGLDIP
Sbjct: 322 SSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIP 381
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
V ++ +Y+HR+GRT R G G+ L + + L
Sbjct: 382 AVDWIVQYDPTDEPREYIHRVGRTAR-GTNGSGKALLVLRPEEL 424
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 160 bits (404), Expect = 5e-39
Identities = 109/368 (29%), Positives = 188/368 (50%), Gaps = 18/368 (4%)
Query: 96 FSQVSFIDQIQKEI---SKFPKPTPIQAVSWPYLLAGKD-VIGIAETGSGKTFAFGVPAI 151
FS+V+ + K + F K TP+Q + ++ + A+TG+GKT AF + A
Sbjct: 39 FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAF 98
Query: 152 NNIVTSGDKSSSVKV--LVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQRED 209
+++ + +S K+ +++SPTRELA QI++ LT G+R GG K ++
Sbjct: 99 KDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENA 158
Query: 210 LRR--SQVVVATPGRLLDLIEEGSV-DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS 266
+RR + +++ATPGRL D ++ + + + +LDEADR+++ GF E I I +
Sbjct: 159 IRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTT 218
Query: 267 TSRQTLMFTATWPKEVRELASSFMSEPVK-VSIGNRDELSANKRITQIVEVVDPFRXXXX 325
T + L F+AT P +V + + K ++ + +E ++R+ Q V +
Sbjct: 219 TKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFV-IETKLDKVFS 277
Query: 326 XXXXXXXYHSGPTKNDKVLIF----ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQ 381
+ + ++++F ++ +E +LK + +H L+ QR
Sbjct: 278 SSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCF---ILHSGLTTAQRRS 334
Query: 382 ALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAH 441
F+ + +L ATDV ARG+D PN+ V+ +T P +DY+HRIGRTGRAG+ G A+
Sbjct: 335 ITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
Query: 442 TLFTEQEK 449
+ EQEK
Sbjct: 395 LILLEQEK 402
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 160 bits (404), Expect = 5e-39
Identities = 105/363 (28%), Positives = 184/363 (49%), Gaps = 8/363 (2%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F +P+P+Q + P G D+I A++G+GKT F A++++V ++ S ++L+++P
Sbjct: 82 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL---ENLSTQILILAP 138
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVY-GGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
TRE+A QI+ + + C V+ GG P Q + L++ + V +PGR+ LIE
Sbjct: 139 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD 198
Query: 231 SVDLSHVNYLVLDEADRMLEKG-FEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
++ + +LDEAD++LE+G F+E I I + S+Q L +AT+P+ + + +
Sbjct: 199 YLNPGSIRLFILDEADKLLEEGSFQEQINWIY-SSLPASKQMLAVSATYPEFLANALTKY 257
Query: 290 MSEPVKVSIGNRD-ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFAL 348
M +P V + + D L K+ ++V ++ L+F+
Sbjct: 258 MRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSN 317
Query: 349 YKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPN 408
A + L G+ I G+++Q QR A+ + K C +L++TD+ +RG+D
Sbjct: 318 LHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEK 377
Query: 409 VKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE-QEKHLAGALVNVLNGAGQPVP 467
V V+NL PL E Y+HRIGR GR G G T +E+++ + N P+P
Sbjct: 378 VNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLP 437
Query: 468 EEL 470
+ +
Sbjct: 438 DPI 440
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 160 bits (404), Expect = 5e-39
Identities = 114/360 (31%), Positives = 179/360 (49%), Gaps = 11/360 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ G DVI A++G+GKT F + + + + LV++P
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYA---LLQCQALVLAP 115
Query: 172 TRELASQIYDNLIVLTDACGLR-SCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG 230
TRELA QI + L D G++ CV G ++ QR VVV TPGR+ D++
Sbjct: 116 TRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ 175
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFM 290
S+ + VLDEAD ML +GF++ I I Q Q +F+AT P E E+ FM
Sbjct: 176 SLRPDCIKMFVLDEADEMLSRGFKDQIYDIF-QLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 291 SEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
S+PV++ + RDEL+ + I Q V+ + Y + + +IF +
Sbjct: 235 SKPVRILV-KRDELTL-EGIKQFYVNVE--KEDWKLETLCDLYET--LAITQSVIFVNTR 288
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
++ + ++ + V+A HGD+ Q R + EF++G +L+ TD+ ARG+D+ V
Sbjct: 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 348
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 470
VIN P E+Y+HRIGR+GR G+ G A T ++ + + N + +P +
Sbjct: 349 LVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNV 408
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 159 bits (403), Expect = 7e-39
Identities = 112/363 (30%), Positives = 186/363 (50%), Gaps = 33/363 (9%)
Query: 108 EISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV-----TSGDKSS 162
++ F TP+QA + P L KDV+ + TGSGKT AF +P + +V TS K +
Sbjct: 23 DVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKA 82
Query: 163 SVKVLVISPTRELASQIYDNLIVL-----TDACGLRSCCVYGGVPKDQQREDL-----RR 212
L+I+PTREL+ QI ++ +D ++ C + G + R+D+ R
Sbjct: 83 HFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIK-CQLLVGTNEATVRDDVSNFLRNR 141
Query: 213 SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTL 272
Q+++ TPGR+LD ++ +V S + +V+DEADR+L+ F +D +KI+R R+T
Sbjct: 142 PQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPK-QRRTG 200
Query: 273 MFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXX 332
+F+AT ++ + + PV++++ ++++ ++ ++ V V+P
Sbjct: 201 LFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCV--VNPAEKLQLLVSILNN 258
Query: 333 YHSGPTKNDKVLIFA--------LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALN 384
Y K K +++ Y +RN+ N ++ ++HG L RT+ L
Sbjct: 259 Y-----KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLT 313
Query: 385 EFKAGKCN-LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTL 443
F N +L TDVAARG+DIP+V VI L P + ++HR GRTGRA + G A T
Sbjct: 314 AFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITF 373
Query: 444 FTE 446
E
Sbjct: 374 LNE 376
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 159 bits (403), Expect = 7e-39
Identities = 122/437 (27%), Positives = 207/437 (46%), Gaps = 46/437 (10%)
Query: 68 QSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPY 125
Q +D+ + N + NI+ L FS S + +S+ +P+PIQ S P+
Sbjct: 102 QKLLDDIRRTNRIFTWGDHLPNII--LRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPF 159
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVT-------SGDKSSSVKVLVISPTRELASQ 178
+ ++V+ A TGSGKT AF +P I+ I+ S SS + +V+ PTRELA+Q
Sbjct: 160 MTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQ 219
Query: 179 IYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVN 238
Y + + + G + D++ + ++V+TP R++ +++ +D S +
Sbjct: 220 TYTEFLKYCANTSISAANFSG------EETDIQHADILVSTPNRIVFHLDK--IDTSSLR 271
Query: 239 YLVLDEADRMLE------KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
+LV+DE+DR+ E K F + I + + + F+AT+ EV + + E
Sbjct: 272 WLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDE 331
Query: 293 PVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKE 352
V +G R+ S+N + Q + P L+F K
Sbjct: 332 IGMVCVGERN--SSNTSVKQKLTYCGTEDGKKIAIRNLLRTSFKP----PALVFVQSKDR 385
Query: 353 A-------SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
A S ++ NLK V +I+ S ++R + + F+ G+ +L+ T++ RGLD
Sbjct: 386 AVQLVKLLSAIDSNLK-----VDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLD 440
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
+ +V VIN P ++ Y+HR+GRTGRAG+ G A T FT+ + ++ V+ +G
Sbjct: 441 LSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFD 500
Query: 466 VPE---ELKKFGTHTKK 479
VPE E+KK KK
Sbjct: 501 VPEYLMEMKKVSRDRKK 517
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 159 bits (401), Expect = 1e-38
Identities = 128/410 (31%), Positives = 196/410 (47%), Gaps = 41/410 (10%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV---TSG---DKSSSVKVL 167
K T +Q + L GKD + A+TG+GK+ AF +PAI ++ SG +K + + L
Sbjct: 350 KMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFAL 409
Query: 168 VISPTRELASQIYDN---LIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLL 224
++ PTRELASQI L+ D G+++ DQQR + Q+++ATPGRLL
Sbjct: 410 ILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLL 469
Query: 225 DLIEEGSVDLSHVNYL---VLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKE 281
D IE S S + L ++DEAD +L+ GF D++KII RQ+L+F+AT PKE
Sbjct: 470 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKII-DCLPRQRQSLLFSATIPKE 528
Query: 282 VRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGP---- 337
VR ++ + RD + VE D R +H P
Sbjct: 529 VRRVSQLVLK---------RDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLK 579
Query: 338 -----TKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCN 392
T + K+++F S + L+ +V IH Q RT+ +EFK
Sbjct: 580 EHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRL 639
Query: 393 LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLA 452
+L+ +DV+ARG++ P+V VI + P E Y+HR+GRTGR G+ G L E++
Sbjct: 640 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFL 699
Query: 453 GALVNV-LNGAGQP---------VPEELKKFGTHTKKKEHSAYGAFFKDV 492
L ++ L P V + + K T K+ + A+ ++ V
Sbjct: 700 DELKDLPLEPIPAPDLDSIVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSV 749
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 158 bits (400), Expect = 2e-38
Identities = 135/409 (33%), Positives = 197/409 (48%), Gaps = 33/409 (8%)
Query: 67 SQSDIDEFLKENEVTVSDPSGS---NIVPYL---------DFSQVSFIDQIQKEISK--- 111
S+ + E KE E V P + VP L D S S + + + K
Sbjct: 136 SEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIK 195
Query: 112 ---FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS-SSVKVL 167
F T IQ S LL G+D++ A+TGSGKT AF +PA+ IV + + VL
Sbjct: 196 EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVL 255
Query: 168 VISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDL 226
++SPTRELA Q + L L + GG + + + L ++VATPGRLLD
Sbjct: 256 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDH 315
Query: 227 IEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
++ + ++ LV+DEADR+L+ GFEE++K+II+ T RQT++F+AT ++V +L
Sbjct: 316 MQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-PTRRQTMLFSATQTRKVEDL 374
Query: 286 AS-SFMSEPVKVSIGNRDELSANKRITQIVE--VVDPFRXXXXXXXXXXXYHSGPTKNDK 342
A S EP+ V + D+ AN + + + VV P + + K
Sbjct: 375 ARISLKKEPLYVGV---DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN----RKKK 427
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
+++F L Y V AIHG Q +RT +F LL TDVAAR
Sbjct: 428 LMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAAR 487
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
GLDIP V ++ P ++Y+HR+GRT R G G H L + + L
Sbjct: 488 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLILRPEEL 535
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 157 bits (398), Expect = 3e-38
Identities = 113/345 (32%), Positives = 170/345 (48%), Gaps = 10/345 (2%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT-SGDKSSSVKVLVISPTRE 174
T IQ + L GKDV+G A+TGSGKT AF VP + + + + VL+ISPTRE
Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRE 152
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG-SVD 233
LA Q ++ L + + + GG + E + ++V TPGRLL ++E S
Sbjct: 153 LAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFH 212
Query: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
+ + LVLDEADR+L+ GF + + +I + RQTL+F+AT K V++LA + P
Sbjct: 213 ATDLQMLVLDEADRILDMGFADTMNAVI-ENLPKKRQTLLFSATQTKSVKDLARLSLKNP 271
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
V + + + S + Q V + + + K ++ F+ K+
Sbjct: 272 EYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSH----LKKKSIVFFSSCKEVQ 327
Query: 354 S--RVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
RV L+ G + A+HG Q +R + NEF + +L ATD+AARGLD P V
Sbjct: 328 YLYRVFCRLR-PGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNW 386
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALV 456
V+ P Y+HR GRT R + G A + EK + L+
Sbjct: 387 VLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLL 431
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 157 bits (397), Expect = 4e-38
Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 17/340 (5%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRE 174
P+P+Q S P++L GK+++ ++ G+GKT ++ VP +N I +S S++ +++ P RE
Sbjct: 131 PSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSS---ELSIQGIILVPIRE 187
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ---VVVATPGRLLDLIEEGS 231
LA QI N+ +++ G+ S V GG Q + +R S V+V TPGR++DL+E+
Sbjct: 188 LALQISRNVKRMSEGTGVISAPVVGGT--SMQDDIIRVSNGVHVMVGTPGRIVDLVEKRV 245
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
LS LV DEAD++L+ F E + K++ +Q L+++AT+P V +M
Sbjct: 246 GTLSKRVILVFDEADKLLDVTFGETVTKLL-DLLPREKQMLLYSATFPYFVTGFIRRYMK 304
Query: 292 EPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
P+ +++ EL A + Q V P ++ +IF K
Sbjct: 305 NPLCINL--MKEL-APVGVKQFYTYVKPSEKLLCLKSLLLRLSI-----NQCVIFCNSIK 356
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
+ + G IH ++Q+ R + F GKC +L+ATD+ RG+D PN
Sbjct: 357 TVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNY 416
Query: 412 VINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
VIN + E Y+HRIGR GR G G A +L T +EK +
Sbjct: 417 VINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEM 456
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 157 bits (396), Expect = 5e-38
Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 17/305 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + P +L +DVI A++G+GKT F + + ++ T + + L++SP
Sbjct: 46 FEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDT---QVRETQALILSP 102
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR----SQVVVATPGRLLDLI 227
TRELA QI ++ L D ++ GG ED+R+ VV TPGR+ D+I
Sbjct: 103 TRELAVQIQKVVLALGDYMNVQCHACIGGT---NLGEDIRKLDYGQHVVSGTPGRVFDMI 159
Query: 228 EEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
++ + LVLDEAD ML KGF+E + I R Q ++ +AT P E+ E+ S
Sbjct: 160 RRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYL-PPGAQVVLLSATLPHEILEMTS 218
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM++P+++ + RDEL+ + I Q VD R Y + + ++F
Sbjct: 219 KFMTDPIRILV-KRDELTL-EGIKQFFVAVD--REEWKFDTLIDLYDT--LTITQAVLFC 272
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+++ + +K + V+++HGD+ Q+ R + + EF+AG +L++TDV ARGLD+P
Sbjct: 273 NTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVP 332
Query: 408 NVKTV 412
V V
Sbjct: 333 QVSLV 337
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 157 bits (396), Expect = 5e-38
Identities = 116/362 (32%), Positives = 180/362 (49%), Gaps = 18/362 (4%)
Query: 108 EISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSS---- 163
E + F T +Q + P +L GKD++ A+TG+GKT AF +P+I ++ + S
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHP 155
Query: 164 -VKVLVISPTRELASQIYDNLIVLTD---ACGLRSCCVYGG--VPKDQQREDLRRSQVVV 217
+ VLV+ PTRELA Q +L + G++ V GG +P +Q+R Q++V
Sbjct: 156 PIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVIGGTKLPTEQRRLQKSPCQILV 213
Query: 218 ATPGRLLDLIEEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMF 274
ATPGRL D I+ S L V LVLDEAD +L+ GF +I++II RQT +F
Sbjct: 214 ATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPK-QRQTFLF 272
Query: 275 TATWPKEVRELASSFMSEPVK-VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXY 333
+AT EVR++ + + V+ +++++Q+ + R
Sbjct: 273 SATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKK- 331
Query: 334 HSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNL 393
H KV+IF V L +V IH Q RT+ +EF+ K +
Sbjct: 332 HITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSII 391
Query: 394 LLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAG 453
L+ +DV+ARG+D P+V V+ + P E Y+HR+GRTGR G+ G L E++
Sbjct: 392 LVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLS 451
Query: 454 AL 455
++
Sbjct: 452 SV 453
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 156 bits (394), Expect = 8e-38
Identities = 104/340 (30%), Positives = 164/340 (47%), Gaps = 21/340 (6%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVL--VI 169
F +P+PIQ S P L G+D++ A+ G+GKT AF +P + I + VL
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQGNCVLDHTS 210
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEE 229
+EL + ++V T L KD + ++V TPGR+LDL ++
Sbjct: 211 QVCKELGKHLKIQVMVTTGGTSL----------KDDIMRLYQPVHLLVGTPGRILDLTKK 260
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
G L + LV+DEAD++L + F+ ++ +I SRQ LMF+AT+P V++ F
Sbjct: 261 GVCVLKDCSVLVMDEADKLLSQEFQPSVEHLI-SFLPESRQILMFSATFPVTVKDFKDRF 319
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
++ P +++ DEL+ K ITQ V+ + + +IF
Sbjct: 320 LTNPYVINL--MDELTL-KGITQFYAFVEERQKIHCLNTLFSKLQINQS-----IIFCNS 371
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
+ + + GY IH + Q R + ++F+ G C L+ TD+ RG+DI V
Sbjct: 372 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 431
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
VIN FP E Y+HR+GR+GR G G A L T +++
Sbjct: 432 NVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDR 471
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 155 bits (392), Expect = 1e-37
Identities = 132/453 (29%), Positives = 216/453 (47%), Gaps = 69/453 (15%)
Query: 70 DIDEFLKENEVT---VSDPSGSNIVPYLDFSQVSFIDQIQKEISK---FPKPTPIQAVSW 123
D+ + L++N+++ + + + + +F+ V Q+ ++ PT IQ+
Sbjct: 111 DVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCL 170
Query: 124 PYLLA--GKDVIGIAETGSGKTFAFGVPAINNIV----TSGDKSSSVKVLVISPTRELAS 177
P LL KD A+TGSGKT A+ +P + ++ ++S + ++++PTREL
Sbjct: 171 PALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQ 230
Query: 178 QIYDNLIVLTD---ACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEG-SV 232
QIY+ L + + + SC V GG K ++ +R+ +++ TPGRL D +E ++
Sbjct: 231 QIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEAL 290
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS------------RQTLMFTATWPK 280
D+S V ++VLDE DR+++ GFEE + KI+ S S + T++ +AT
Sbjct: 291 DVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKD 350
Query: 281 EVRELASSFMSEP--VKVSIGNRDELSANKRITQIVE--VVDPFRXXXXXXXXXXXYHSG 336
V+ L+ S + + +K SI ++ Q+++ VV P + H
Sbjct: 351 TVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVR 410
Query: 337 PTKNDKVLIFAL------YKKEASRVERN------------------------LKYNG-Y 365
K K++IF + EA R N L+ +G
Sbjct: 411 SYK--KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKS 468
Query: 366 DVAAIHGDLSQQQRTQALNEFKAGK---CNLLLATDVAARGLDIPNVKTVINLTFPLTVE 422
+V +HG LSQQ RT LN F + + ++LL TDVAARGLD+PNV V+ P + +
Sbjct: 469 NVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTD 528
Query: 423 DYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGAL 455
DY+HRIGRT RAG G A +E L
Sbjct: 529 DYLHRIGRTARAGHNGAAIMFLLPKESEYINLL 561
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 155 bits (391), Expect = 2e-37
Identities = 118/413 (28%), Positives = 192/413 (45%), Gaps = 40/413 (9%)
Query: 65 SASQSDIDEFLKENEVTVSDPSGSNIVP----------------YLDFSQVSFIDQIQKE 108
+++Q D+ ++ +E E+ V D I P Y+ F D + K
Sbjct: 2 ASAQEDLIDYEEEEEL-VQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKP 60
Query: 109 I-------SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS 161
S F P+ +Q V P + G DV+ A++G GKT F + + I
Sbjct: 61 ELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPV---D 117
Query: 162 SSVKVLVISPTRELASQIYDNLIVLTDAC-GLRSCCVYGGVPKDQQREDLRRSQ----VV 216
V VLV+ TRELA QI + + +R+ YGG+ Q E + +V
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 217 VATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFT 275
VATPGRL L+ E + ++ V + VLDE D++LE DI+++ R T +Q +MF+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRAT-PPQKQVMMFS 236
Query: 276 ATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHS 335
AT E+R + FM P+++ + + +L+ + V++ + +
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSL--- 293
Query: 336 GPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLL 395
+ ++V+IF A+ ++R L+ + IHG L Q++R + FK + +
Sbjct: 294 ---EFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICV 350
Query: 396 ATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
ATDV RG+DI V VIN P + + Y+HR+GR GR G G A T + +E
Sbjct: 351 ATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEE 403
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 155 bits (391), Expect = 2e-37
Identities = 124/405 (30%), Positives = 197/405 (48%), Gaps = 31/405 (7%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK------VL 167
K T +Q + L GKD + A+TG+GK+ AF +PAI ++ + + V VL
Sbjct: 397 KMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVL 456
Query: 168 VISPTRELASQIY-DNLIVLTDACGLRSCCVYGGVP--KDQQREDLRRSQVVVATPGRLL 224
++ PTRELASQI + +L + G+ + GG DQQR + Q+++ATPGRLL
Sbjct: 457 ILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLL 516
Query: 225 DLIEEGSVDLSHVNYL---VLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKE 281
D IE S S + L ++DEAD +L+ GF+ D++KII RQ+L+F+AT PKE
Sbjct: 517 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII-DCLPRQRQSLLFSATIPKE 575
Query: 282 VRELASSFMSEPVK----VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGP 337
VR ++ + + +G + + ++ Q +V P H
Sbjct: 576 VRRVSQLVLKRDHSYIDTIGLGC---VETHDKVKQSC-IVAPHESHFHLVPHLLKEHINN 631
Query: 338 TKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLAT 397
+ K+++F S + L+ +V IH Q RT +EFK +L+ +
Sbjct: 632 MPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTS 691
Query: 398 DVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVN 457
DV+ARG++ P+V VI + P E Y+HR+GRTGR G+ G L E++ L +
Sbjct: 692 DVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKD 751
Query: 458 V-LNGAGQP---------VPEELKKFGTHTKKKEHSAYGAFFKDV 492
+ L P V + + K T K+ + A+ ++ V
Sbjct: 752 LPLEPIPAPDLDSRVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSV 796
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 154 bits (389), Expect = 3e-37
Identities = 119/362 (32%), Positives = 177/362 (48%), Gaps = 15/362 (4%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI-VTSGDKSSSVKVLVIS 170
F + T IQ+ S LL G+D++G A+TGSGKT AF +PA+ I + V++IS
Sbjct: 190 FTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIIS 249
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEE 229
PTREL+ Q + L L V GG + + E L + ++VATPGRLLD ++
Sbjct: 250 PTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQN 309
Query: 230 GSVDLSHVNY--LVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
S D + N L++DE DR+LE GFEE++K+II RQT++F+AT + L+
Sbjct: 310 -SPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR-RQTMLFSATQTARIEALSK 367
Query: 288 -SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIF 346
+ SEP+ V + + + + + Q V + + KV++F
Sbjct: 368 LALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKK-----NRKKKVMVF 422
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
Y V +IHG Q +RT +F + +LL TDVAARGLDI
Sbjct: 423 FSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDI 482
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPV 466
P V ++ P +Y+HR+GRT R G + H L + + L + L A P+
Sbjct: 483 PQVDWIVQYDPPDDPREYIHRVGRTAR-GSGTSGHALLLMRPEEL--GFLRYLKAAKVPL 539
Query: 467 PE 468
E
Sbjct: 540 NE 541
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 153 bits (387), Expect = 5e-37
Identities = 101/337 (29%), Positives = 167/337 (48%), Gaps = 14/337 (4%)
Query: 110 SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVI 169
S F P+ +Q P + G DVI A++G GKT F + + I S V LV+
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPS---PGQVSALVL 120
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ---VVVATPGRLLDL 226
TRELA QI + + + V+ G + +DL +++ +VV TPGR+L L
Sbjct: 121 CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL 180
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
E + L +V + +LDE D+MLE D+++I + T +Q +MF+AT KE+R +
Sbjct: 181 AREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPV 239
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
FM +P+++ + + +L+ + + +++ + + + +V+I
Sbjct: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFN------QVVI 293
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F A+ + + L + IH +SQ++R FK G +L+ATD+ RG+D
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 353
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
I V VIN P + + Y+HR+GR GR G G A T
Sbjct: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 153 bits (386), Expect = 7e-37
Identities = 101/337 (29%), Positives = 167/337 (48%), Gaps = 14/337 (4%)
Query: 110 SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVI 169
S F P+ +Q P + G DVI A++G GKT F + + I S V LV+
Sbjct: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPS---PGQVSALVL 120
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ---VVVATPGRLLDL 226
TRELA QI + + + V+ G + +DL +++ +VV TPGR+L L
Sbjct: 121 CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL 180
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
E + L +V + +LDE D+MLE D+++I + T +Q +MF+AT KE+R +
Sbjct: 181 AREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPV 239
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
FM +P+++ + + +L+ + + +++ + + + +V+I
Sbjct: 240 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFN------QVVI 293
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F A+ + + L + IH +SQ++R FK G +L+ATD+ RG+D
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 353
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
I V VIN P + + Y+HR+GR GR G G A T
Sbjct: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 152 bits (385), Expect = 9e-37
Identities = 110/364 (30%), Positives = 184/364 (50%), Gaps = 15/364 (4%)
Query: 96 FSQVSFIDQIQKEI--SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F+Q+ D+ ++ + +K+ T +Q+ + P+ L G+D++G A TGSGKT AF +P +
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 154 IVTS-GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGG-VPKDQQREDLR 211
+ V ++ISPTRELA+Q + L + + + GG D ++E +
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVH 192
Query: 212 RSQVVVATPGRLLDLIEE-GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQ 270
++V PGRLL ++E + + + L+LDEADR+L+ F+ + II Q RQ
Sbjct: 193 EMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL-PKHRQ 251
Query: 271 TLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXX 330
TL+F+AT K+V++LA + +P +S+ + + Q V +V P
Sbjct: 252 TLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIV-PVEKKLDMLWSF 310
Query: 331 XXYHSGPTKNDKVLIFALYKKEASRVER--NLKYNGYDVAAIHGDLSQQQRTQALNEFKA 388
H N ++L+F KK+ V N G + ++HG +SQ++R ++F
Sbjct: 311 IKTH----LNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQF-I 365
Query: 389 GKCNLLLATDVAARGLDIPN-VKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
+ ++L TDV ARGLD V V+ + P V Y+HR+GRT R G + T
Sbjct: 366 ERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425
Query: 448 EKHL 451
E+ +
Sbjct: 426 EEKM 429
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 152 bits (384), Expect = 1e-36
Identities = 122/414 (29%), Positives = 192/414 (45%), Gaps = 92/414 (22%)
Query: 112 FPKPTPIQAVSWPYLLAGK-DVIGIAETGSGKTFAFGVPAINNI-------VTSG----- 158
F PT IQA++ P + GK D++G AETGSGKT AFG+P + I + SG
Sbjct: 235 FKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAP 294
Query: 159 ------------------------------DKSSSVKV-----------LVISPTRELAS 177
D+ S + LV++PTRELA
Sbjct: 295 KVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAV 354
Query: 178 QIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDL-- 234
Q+ ++L+ G+R ++GG+ +Q LR+ +VVATPGRL +L +G+ L
Sbjct: 355 QVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGK 414
Query: 235 -SHVNYLVLDEADRMLEKGFEEDIKKIIR-----QTRSTSRQTLMFTATWPKEVRELASS 288
V++LV+DE DRM+EKG E+++ +++ + + RQ +++AT L
Sbjct: 415 IEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSAT-----LTLVHD 469
Query: 289 FMSEPVKVSIGNRDEL---SANKRITQIVE--------VVDPFRXXXXXXXXXXXYHSGP 337
K ++G R + + +++I ++E +VD P
Sbjct: 470 LPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCP 529
Query: 338 TKNDKVLIFALYKKEASR----------VERNLKYNGY---DVAAIHGDLSQQQRTQALN 384
+ ++ ++ R V+R G + +H ++ Q+QR + L
Sbjct: 530 IDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLE 589
Query: 385 EFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
F+ LL+ATDVAARGLDIPNV+ VI+ P T E+YVHR GRT RA ++G
Sbjct: 590 RFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHG 643
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 151 bits (382), Expect = 2e-36
Identities = 114/402 (28%), Positives = 190/402 (46%), Gaps = 66/402 (16%)
Query: 112 FPKPTPIQAVSWPYLL-AGKDVIGIAETGSGKTFAFGVPAINNIVTSGDK---------- 160
F +PT IQ + GKDVIG AETGSGKT AFG+P + ++ +K
Sbjct: 211 FKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGE 270
Query: 161 -------SSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR-R 212
++ L+I+PTRELA Q+ ++L ++ + GG+ ++Q L+ +
Sbjct: 271 EAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEK 330
Query: 213 SQVVVATPGRLLDLIEEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKII-------- 261
++VVATPGRL +L+ G V+L +++ VLDEADRM+E+G +++ I+
Sbjct: 331 PEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDK 390
Query: 262 -----RQTRSTS----------RQTLMFTAT------WPKEVRELASSFMSEPVKVSIGN 300
QT ++ RQT +F+AT + K+++ SS + + +
Sbjct: 391 PNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKR-GSSKSKQSSSGEVNS 449
Query: 301 RDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTK--------------NDKVLIF 346
+ LS + V ++D + K + ++F
Sbjct: 450 IEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVF 509
Query: 347 ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDI 406
+ + LK G DV + ++ Q+ R ++++ F+A + +L+ATD+ ARG+DI
Sbjct: 510 CTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDI 569
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
NV+T+I+ P + E YVHR GRT RA G + L E
Sbjct: 570 KNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNE 611
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 151 bits (382), Expect = 2e-36
Identities = 121/448 (27%), Positives = 197/448 (43%), Gaps = 65/448 (14%)
Query: 61 SFAASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSF---------IDQIQKEISK 111
SF Q + + V + + IV L FS SF +D +++E
Sbjct: 73 SFVTEMGQGKVRAVKNDKMKVVKEKKPAEIVSPL-FSAKSFEELGLPDSLLDSLERE--G 129
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV----------TSGDKS 161
F PT +Q+ + P ++ G D + + TGSGKT A+ +P ++ I + DK
Sbjct: 130 FSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKR 189
Query: 162 SSVKVLVISPTRELASQIYDNLIVLTDACGLRSCC-VYGGVPKDQQREDLRRSQ--VVVA 218
+ ++ ++++P+REL QI + L R + GG + +Q E L++++ +VV
Sbjct: 190 TEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVG 249
Query: 219 TPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS---------- 268
TPGR+ ++ + G + +LVLDE D +L F EDI +I+ S
Sbjct: 250 TPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDE 309
Query: 269 ---RQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDEL-----------------SANK 308
RQT++ +AT P V A S+ EPV V L A+
Sbjct: 310 RANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADG 369
Query: 309 RITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN--------DKVLIFALYKKEASRVERNL 360
+I ++ + P H T V+ F + ++ V L
Sbjct: 370 QIQTTIQSLPP--ALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKL 427
Query: 361 KYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLT 420
+ G + A +HGDL + R+ L +FK G+ +L+ +++ARGLD+ V+NL P
Sbjct: 428 EARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTD 487
Query: 421 VEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
Y HR GRTGR G+ GT T+ E +
Sbjct: 488 AVHYAHRAGRTGRLGRKGTVVTVCEESQ 515
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 151 bits (381), Expect = 3e-36
Identities = 118/349 (33%), Positives = 172/349 (48%), Gaps = 28/349 (8%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKS----SSVKVL 167
F + TP+Q + P LLA KDV A TGSGKT AF VP + + ++ + L
Sbjct: 27 FQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIGAL 86
Query: 168 VISPTRELASQIYDNLIVLT---DACGLRSCCVYGGVPKDQQREDLRRSQ--VVVATPGR 222
VISPTRELA QI + L D L + GG ++ LRR ++V TPGR
Sbjct: 87 VISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGR 146
Query: 223 LLDLIEEGSVDLS------HVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTA 276
L DL + DL+ + +LVLDEADR+L+ GF+ + I+ R+T +F+A
Sbjct: 147 LEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYL-PRQRRTGLFSA 205
Query: 277 TWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSG 336
T EV +L + + PV VS+ + ++ R+ +V+P + S
Sbjct: 206 TQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEP----ELKFVALLEFLSS 261
Query: 337 P-TKNDKVLIF----ALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKC 391
P T KV++F A + A + L V IHG + + +R + +F+
Sbjct: 262 PATVIGKVMVFFPTCACVEYWAEALPPLLPKR--TVLGIHGKM-KNKRANVVEKFRNTPQ 318
Query: 392 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
+LL TDV ARGLD+P ++ V+ P T +VHR+GRT R G G A
Sbjct: 319 AVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNA 367
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 150 bits (378), Expect = 6e-36
Identities = 109/399 (27%), Positives = 189/399 (47%), Gaps = 32/399 (8%)
Query: 63 AASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQK-EISK------FPKP 115
A SA++ D N D GS Y+ F D + K E+S+ F P
Sbjct: 35 ATSATEGD-----NNNNTAAGDKKGS----YVGIHSTGFKDFLLKPELSRAIIDCGFEHP 85
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
+ +Q + P + G DV+ A++G GKT F + + + V V+VI REL
Sbjct: 86 SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL---DPVPGEVAVVVICNAREL 142
Query: 176 ASQIYDNLIVLTDAC-GLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLIEEG 230
A QI + + + +++ YGG P + E L+ +VVATPGRL L+ E
Sbjct: 143 AYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREK 202
Query: 231 SVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+DLSHV V+DE D++LE+ D+++I R T +Q +MF+AT +E+R + F
Sbjct: 203 YIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRAT-PRDKQVMMFSATLSQEIRPICRRF 261
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
+ P+++ + + +L+ + +++ + + + ++V+IF
Sbjct: 262 LQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDL------EFNQVIIFVKS 315
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
A+ + + L + + +HG + Q++R FK + + ++TDV RG+DI +
Sbjct: 316 TTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERI 375
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
IN + Y+HR+GR GR G G A + + +E
Sbjct: 376 NLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKE 414
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 150 bits (378), Expect = 6e-36
Identities = 115/364 (31%), Positives = 172/364 (46%), Gaps = 34/364 (9%)
Query: 110 SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD---KSSSVKV 166
S F TP+QA + P L + KDV A TGSGKT AF VP + + S K V
Sbjct: 34 SDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMG 93
Query: 167 LVISPTRELASQIYD-NLIVLTDACGLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRL 223
++ISPTREL++QIY+ ++ + S + GG V D + + V++ TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 224 LDLIEEGSV-DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
D++E + D ++ L+LDEADR+LE GF+ + II + R+T +F+AT + V
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL-PKQRRTGLFSATQTEGV 212
Query: 283 RELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
ELA + + PV+V + + + +++++T K
Sbjct: 213 EELAKAGLRNPVRVEVRAKSKSESSQQLT---------NSKTPSGLHLEYMECEADKKSS 263
Query: 343 VLIFALYKKEASRVE------RNLKYNG-----------YDVAAIHGDLSQQQRTQALNE 385
L+ L K ++ ++ Y G + IHGD+ Q R +AL
Sbjct: 264 QLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALAS 323
Query: 386 FKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFT 445
F LL TDVAARGLDIP + V+ P + HR GRT R G+ G A
Sbjct: 324 FTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLL 383
Query: 446 EQEK 449
+E+
Sbjct: 384 PKEE 387
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 149 bits (377), Expect = 7e-36
Identities = 110/365 (30%), Positives = 175/365 (47%), Gaps = 18/365 (4%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151
+ F + +I+K + + F +Q P L G D+IG ++TG+GKT AF VP +
Sbjct: 4 MKFEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTL 63
Query: 152 NNIVTSG-DKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL 210
+V+ G + LVI+PTRELA QI+D L + L + + GG+ + + +
Sbjct: 64 QRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKV 123
Query: 211 RRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR 269
+ ++V TPGRLL ++E + ++V L+LDEAD+M+E GF+E ++ I+ +
Sbjct: 124 NQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYI-PQKK 182
Query: 270 QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXX 329
QTL+F+AT + + +P +SI + +Q+ + R
Sbjct: 183 QTLLFSATPKASTARILK--LEDPRIISIYKEEGFP-----SQLRQYFYMMRTGDKINYL 235
Query: 330 XXXYHSGPTKNDKVLIFALYKKEAS---RVERNLKYNGYDVAAIHGDLSQQQRTQALNEF 386
S P K ++F KE + LK + + G +SQ+QR F
Sbjct: 236 HTFIGSNP--EVKGIVFFSTCKEVKFHCLLFERLKLRN-RIFCLSGGMSQKQRIDVFKRF 292
Query: 387 KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE 446
K +L TD+ +RGLD P V VI P VE YVHR+GRT R + G ++
Sbjct: 293 VKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVH 352
Query: 447 QEKHL 451
E+ L
Sbjct: 353 GEEKL 357
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 149 bits (376), Expect = 1e-35
Identities = 118/393 (30%), Positives = 182/393 (46%), Gaps = 51/393 (12%)
Query: 112 FPKPTPIQAVSWPYLLAGK-DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV------ 164
F +PT IQ+ P + + DV+G AETGSGKT AFG+P + ++ S D S
Sbjct: 175 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVR 234
Query: 165 --KVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL--RRSQVVVATP 220
+ L+++PTREL QI ++ L L + + GG+ + +Q + +R +VVATP
Sbjct: 235 GPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATP 294
Query: 221 GRLLDLIEEGS-----VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR----QT 271
GRL +++E + + LV+DE DRM+E+G+ ++ I+ + S QT
Sbjct: 295 GRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQT 354
Query: 272 LMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIV----------EVVDPFR 321
L+F+AT L + + + ELS+ ++I +++ +V+D R
Sbjct: 355 LVFSAT-------LTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTR 407
Query: 322 XXXXX--XXXXXXYHSGPTKNDKVLIFALYK------------KEASRVERNLKYNGYDV 367
+ D L++ L + A R+ LK D
Sbjct: 408 QMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSVNIDP 467
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 427
+H + Q+QR + L +F K +LLATDVAARGLDI + VI+ P VE Y+HR
Sbjct: 468 MILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHR 527
Query: 428 IGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLN 460
GRT RA G L + L LN
Sbjct: 528 SGRTARASHRGLTVVLVDPPSRQFYMKLCKGLN 560
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 147 bits (371), Expect = 4e-35
Identities = 119/433 (27%), Positives = 190/433 (43%), Gaps = 69/433 (15%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLA----------GKDVIGIAETGSG 141
++FS ++ ++ + + K + +QA P LL G DV A TGSG
Sbjct: 126 VEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSG 185
Query: 142 KTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGV 201
KT ++ +P + + S ++ +VI PTREL Q+ GL+ C G
Sbjct: 186 KTLSYVIPIVQCL--SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQK 243
Query: 202 PKDQQREDLR------RSQVVVATPGRLLDLIE-EGSVDLSHVNYLVLDEADRMLEKGFE 254
+ L R V+V+TPGRL+D I + S L H+ Y+V+DEADR+L++ F+
Sbjct: 244 SLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQ 303
Query: 255 E----------------------------------DIKKIIRQTRSTSRQTLMFTATWPK 280
+ DI ++ + Q L+F+AT +
Sbjct: 304 DWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTR 363
Query: 281 EVRELASSFMSEPVKVSIGNRD-------ELSANKRITQIVEVVDPFRXXXXXXXXXXXY 333
+ ++AS + P V + N+D E+ + + + + + Y
Sbjct: 364 DPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLY 423
Query: 334 HSGPTKN-DKVLIFALYKKEASRVERNLKY------NGYDVAAIHGDLSQQQRTQALNEF 386
H +KN +L F + A+R+ R L+ + LS+ +R + ++ F
Sbjct: 424 HLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRF 483
Query: 387 KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTE 446
G NLL+ +D+ ARG+D+ N + VIN PL+V YVHRIGRT RAG+ G A TL
Sbjct: 484 ATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQS 543
Query: 447 QEKHLAGALVNVL 459
E H LV L
Sbjct: 544 HEGHHFSKLVKQL 556
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 146 bits (369), Expect = 6e-35
Identities = 112/390 (28%), Positives = 190/390 (48%), Gaps = 31/390 (7%)
Query: 68 QSDIDEFLKENEVTV------SDPSGSNIVPYLDFSQVSFIDQIQKEI--SKFPKPTPIQ 119
Q D + E EV V +DP+ S + F ++ ++ K I KF KP+ IQ
Sbjct: 61 QEDSNLISSEYEVKVKLADIQADPN-SPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQ 119
Query: 120 AVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELAS 177
+ P LL +++I +++G+GKT AF + + + + +S + + ++P+RELA
Sbjct: 120 ERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV---NPEDASPQAICLAPSRELAR 176
Query: 178 QIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHV 237
Q + + + + S + VP ++ +QV+V TPG +LDL+ + L +
Sbjct: 177 QTLEVVQEMGKFTKITSQLI---VPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKI 233
Query: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVS 297
VLDEAD ML++ D +++ Q ++F+AT+ VR+ A +
Sbjct: 234 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN----- 288
Query: 298 IGNRDELSANK-RITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRV 356
N EL N+ + I ++ + + T + IF KK A+ +
Sbjct: 289 -ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSI-IFVATKKTANVL 346
Query: 357 ERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLT 416
LK G++V+ +HGDL Q+R + +++F+ G+ +L+ T+V ARG+DIP V V+N
Sbjct: 347 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 406
Query: 417 FPLTVE------DYVHRIGRTGRAGQYGTA 440
P Y+HRIGRTGR G+ G A
Sbjct: 407 LPTLANGQADPATYIHRIGRTGRFGRKGVA 436
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 146 bits (369), Expect = 6e-35
Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 14/340 (4%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ +Q P + G DV+ A++G GKT F + + + V V+ +
Sbjct: 61 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPV---DGEVSVVCMCH 117
Query: 172 TRELASQIYDNLIVLTDAC-GLRSCCVYGG--VPKDQQREDLRRSQVVVATPGRLLDLIE 228
TRELA QI + G++ +GG + KD++R +VV TPGR+L L
Sbjct: 118 TRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALAR 177
Query: 229 EGSVDLSHVNYLVLDEADRML-EKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
G + L V Y VLDE D+M+ + D+++I++ T +Q +MF+AT PKE+R +
Sbjct: 178 SGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQ-QKQVMMFSATLPKELRTVCK 236
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM +P++V + + +L+ + V++ + + + ++V+IF
Sbjct: 237 RFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDAL------EFNQVVIFV 290
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
K + + L + AIH ++Q++R FK + +L+ATD+ RG+DI
Sbjct: 291 KAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIE 350
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
V V N P + Y+HR+ R GR G G A T +++
Sbjct: 351 RVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDE 390
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 146 bits (369), Expect = 6e-35
Identities = 111/375 (29%), Positives = 179/375 (47%), Gaps = 23/375 (6%)
Query: 110 SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVI 169
+ F PT IQA + P LA D+I +++G+GKT + + + + + +++
Sbjct: 43 NNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSF---NPNINQPHAMIV 99
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVY-GGVPKDQQREDLRRSQVVVATPGRLLDLIE 228
PTRELA Q+ D L + C + GG + R+ + S+V++ TPGRLL L E
Sbjct: 100 VPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNESRVIIGTPGRLLHLYE 159
Query: 229 EGSVDLSHVNYLVLDEADRMLE-KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
D+S + LVLDEAD++ + K + + K+I + +RQ + +AT+ + + E +
Sbjct: 160 NRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLI-EAMPKNRQIIACSATYDQNLDERLA 218
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN----DKV 343
M +P+ +S N + + I Q V + P + G N ++
Sbjct: 219 KVMDKPMLIS--NSERATVLLGIRQFVYEL-PQQNNSVEEMRLKLQILGQIFNQLPYEQA 275
Query: 344 LIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
+IFA + A + L +G D I G + Q +R ++ +L+ATD+ ARG
Sbjct: 276 IIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARG 335
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTL---------FTEQEKHLAGA 454
+D P+ VIN+ P Y+HRIGR GR G G A T F E K +A A
Sbjct: 336 VDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATA 395
Query: 455 LVNVLNGAGQPVPEE 469
+VL +P+P E
Sbjct: 396 W-SVLEFPKEPMPNE 409
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 146 bits (368), Expect = 8e-35
Identities = 116/375 (30%), Positives = 181/375 (47%), Gaps = 28/375 (7%)
Query: 99 VSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVT 156
V+ +++KEI + F K T +Q P +L GKDV+ + TG+GKT AF P ++ I
Sbjct: 9 VAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYD 68
Query: 157 S-GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-Q 214
G V +VI+PTRELA QI + + C C GG+ ++ + ++
Sbjct: 69 GKGRGRPGVTAVVITPTRELALQIREVAGLFDVKCE----CFIGGMSIEEDYKRMKEEFS 124
Query: 215 VVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMF 274
+ V TPGRLL+++ + + S +++LVLDEAD++L GFEE + +++ + +R T +F
Sbjct: 125 IAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKL-PRNRVTGLF 183
Query: 275 TATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYH 334
+AT V +L+ F+ PV +++GN + A + I VV P
Sbjct: 184 SATRNDSVDKLSRVFLRNPVSINVGNNEMPVALEYI-----VVSPMEKLLVLMDI----- 233
Query: 335 SGPTKNDKVLIFALYKKEASRVERNLKYNGY-DVAAIHGDLSQQQRTQALNEFKAGKCNL 393
+ ++F E + G+ ++ IHG +SQ +R + EF + L
Sbjct: 234 ---VTGRRCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEF-FQRDGL 289
Query: 394 LLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAG 453
L TDVAARG+D V V++ P VHR GRT R G G + E+
Sbjct: 290 LFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPNER---- 345
Query: 454 ALVNVLNGAGQPVPE 468
A V L G P E
Sbjct: 346 AYVEFLKLKGIPAVE 360
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 145 bits (365), Expect = 2e-34
Identities = 105/358 (29%), Positives = 173/358 (47%), Gaps = 42/358 (11%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK----- 165
K+ IQ P +L G DV+G AET +GKT AFG+P I+ I+ +++ +
Sbjct: 400 KYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDG 459
Query: 166 --VLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGR 222
L+++PTRELA+QI++ L + YG + + ++R +++ T GR
Sbjct: 460 PLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGR 519
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKK--------IIRQT----RSTSRQ 270
++D + + L H+ +LV DEADR+L +D+KK II+ + +RQ
Sbjct: 520 IMDFTVKSHISLLHLRFLVFDEADRLL-----QDMKKDPLGHLGAIIKDAGFMESAATRQ 574
Query: 271 TLMFTATWPKEVRELASSFM------SEPVKVSIGNRDELSANKRIT-QIVEVVDPFRXX 323
T+M +AT+ V +A+ M E +K+ + N +KR+ + E
Sbjct: 575 TIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANG---RLSKRVNLEFFECKGLAEKN 631
Query: 324 XXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQAL 383
+G T K +IF K + L G +HGD SQ R + +
Sbjct: 632 AKLREILKQNVNGKTL--KTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLI 689
Query: 384 NEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFP-----LTVEDYVHRIGRTGRAGQ 436
N+FK+ + NLL+ TD+ +RG+D+ ++ VIN P + ++HR GRTGR G+
Sbjct: 690 NDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGR 747
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 143 bits (361), Expect = 5e-34
Identities = 107/336 (31%), Positives = 165/336 (48%), Gaps = 65/336 (19%)
Query: 167 LVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLD 225
++++PTRELA Q Y GL+ C YGGV +Q DL+R +++VV TPGR++D
Sbjct: 120 VILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMID 179
Query: 226 LIEEGS---VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
++ S +L V YLVLDEADRM KGFE +
Sbjct: 180 VLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQVGG----------------------- 216
Query: 283 RELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
+ + S +++ + + +++ +++E++ + Y G +
Sbjct: 217 KSVVCSDITQNAVIC-------AEHQKFLKLLELLGMY------------YDEGSS---- 253
Query: 343 VLIFALYKKEASRVERNLKYNGYD-VAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAA 401
++F +++A + L GY+ VA++HG + Q R ++ +FK G +L+AT VAA
Sbjct: 254 -IVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAA 312
Query: 402 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNG 461
RGLD+ N+ V+N P EDYVHR+GRTGRAG+ +QEK +AG +
Sbjct: 313 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGR--------KDQEK-MAGEVCRAFET 363
Query: 462 AGQPVPEELKKFGTHTKKKEHSAYGAFFKDVDLSKK 497
AG P +LK K E +A G KDV L K
Sbjct: 364 AGCKPPADLKAM-FERFKSEMAAEG---KDVKLGGK 395
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 143 bits (360), Expect = 7e-34
Identities = 115/397 (28%), Positives = 199/397 (49%), Gaps = 34/397 (8%)
Query: 64 ASASQSDIDE---FLKENEVTV------SDPSGSNIVPYLDFSQVSFIDQIQKEI--SKF 112
A+ QS+ DE +NEV V +DP+ S + F ++ ++ K I KF
Sbjct: 76 ANTKQSENDESNLIPNKNEVRVKLADLQADPN-SPLFSVKSFEELELKPELLKGIYSMKF 134
Query: 113 PKPTPIQAVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVIS 170
KP+ IQ + P LL+ +++IG +++G+GKT AF + ++ + S K ++ ++
Sbjct: 135 QKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAI---CLA 191
Query: 171 PTRELASQIYDNLIVLTDACGLRSCC-VYGGVPKDQQREDLRRSQVVVATPGRLLDLIEE 229
P+RELA QI D + + +++ + VPK + + +Q+V+ TPG ++DL++
Sbjct: 192 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKID----AQIVIGTPGTVMDLMKR 247
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
+D + VLDEAD ML++ D I+ + Q ++F+AT+ + V + A F
Sbjct: 248 RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 307
Query: 290 MSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALY 349
++ + +ELS + I Q+ +D Y G + +IF
Sbjct: 308 APNANEIRL-KTEELSV-EGIKQLY--MDCQSEEHKYNVLVELY--GLLTIGQSIIFCKK 361
Query: 350 KKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNV 409
K A + R + +G+ VA + G+L QR ++ F+ G +L+ T+V ARG+D+ V
Sbjct: 362 KDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQV 421
Query: 410 KTVINLTFPL------TVEDYVHRIGRTGRAGQYGTA 440
V+N PL + Y+HRIGRTGR G+ G +
Sbjct: 422 NLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 458
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 143 bits (360), Expect = 7e-34
Identities = 103/378 (27%), Positives = 191/378 (50%), Gaps = 33/378 (8%)
Query: 82 VSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETG 139
V G ++ FS + D++ K I F KP+ IQ + P++L G +V+ +++G
Sbjct: 39 VGTDRGQKLLVAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSG 98
Query: 140 SGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYG 199
+GKT A+ + N G+++ +V+V++PTREL++Q+ + + L G++
Sbjct: 99 TGKTIAYTCGVLGN-TKIGERT---QVMVVTPTRELSTQVTEVISGLAGPLGIKVFSALK 154
Query: 200 GVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEED--- 256
D E+ VVV +PG +L L+E G ++ V +VLDEAD +L+K
Sbjct: 155 NKITDSIGEE-----VVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLDKDMMGTQTF 209
Query: 257 -IKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVE 315
I K+I + Q + F+AT+ ++V++ + + VK+ +E + ++
Sbjct: 210 RILKLI-----SGAQMIFFSATFSEQVKQTIEFYAPDAVKM----YEERNGKPDEIKLFY 260
Query: 316 VVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLS 375
+ Y S +++IF K + + + L+ + + V+ +HGDL
Sbjct: 261 IEAEGENKRRALKSLYEYLS----ISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLE 316
Query: 376 QQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPL-----TVEDYVHRIGR 430
++R +A+ +F++ K +LL TDV +RG+DIP V ++N P+ + + Y+HRIGR
Sbjct: 317 IEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGR 376
Query: 431 TGRAGQYGTAHTLFTEQE 448
+GR G+ G ++E
Sbjct: 377 SGRFGRTGFVVDFVRDEE 394
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 141 bits (356), Expect = 2e-33
Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 18/341 (5%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVIS 170
+F TPIQA W L G ++ G+A TG+GKT AF +P ++ I K +VL+++
Sbjct: 14 QFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRI---DPKVKQTQVLILA 70
Query: 171 PTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ--VVVATPGRLLDLIE 228
P++ELA Q + + GG +Q + L++ + +VV T GR+L +++
Sbjct: 71 PSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLD 130
Query: 229 EGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASS 288
G++ L+ + ++ DEAD ML + ++ + Q T Q +F+AT +++ +A +
Sbjct: 131 GGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQL-PTDVQLGLFSATSGVDLKYVADT 189
Query: 289 FMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFAL 348
F E VS+G A IT + VD + L+F
Sbjct: 190 FGQEVRPVSVGT----DAPAAITHEFQYVDQKAKASLLIQLAR-------NKQQALVFFN 238
Query: 349 YKKEASRVERNLKYNGYDVAAI-HGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
++ L++ V +I D Q QR AL FK G+ +LLL TDVAARGLDI
Sbjct: 239 TISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIE 298
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
++ V+N P + Y+HR GRTGR G+ G L + +
Sbjct: 299 DLPLVVNAQLPQRKKTYIHRAGRTGRMGKPGRVLNLGNDHD 339
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 141 bits (356), Expect = 2e-33
Identities = 100/342 (29%), Positives = 171/342 (49%), Gaps = 18/342 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ +Q P + G DV+ A++G GKT F + + I + V VLV+
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV---NGQVTVLVMCH 120
Query: 172 TRELASQI---YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS--QVVVATPGRLLDL 226
TRELA QI Y+ + ++ +GG+ + E L+++ VVV TPGR+L L
Sbjct: 121 TRELAFQISKEYERFSKYMPS--VKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
+ S L +V + VLDE D+MLE+ D+++I R T +Q +MF+AT K++R +
Sbjct: 179 VRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH-EKQCMMFSATLSKDIRPV 237
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
FM +P++V + + +L+ + V++ D + + ++V+I
Sbjct: 238 CRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL------EFNQVII 291
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
F + + + L + AIH ++Q++R +FK + +L+AT++ RG+D
Sbjct: 292 FVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMD 351
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
I V V N P + Y+HR+ R GR G G A T +++
Sbjct: 352 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 393
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 141 bits (355), Expect = 3e-33
Identities = 113/380 (29%), Positives = 181/380 (46%), Gaps = 22/380 (5%)
Query: 80 VTVSDPSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETG 139
+T + P S + P L + +D+ S F TP+QA + P+L + KDV+ A TG
Sbjct: 9 ITKALPRFSELKPPLSEDIIEALDR-----SGFEVCTPVQAETIPFLCSHKDVVVDAATG 63
Query: 140 SGKTFAFGVPAINNIVTSGD---KSSSVKVLVISPTRELASQIYDNLIVLTDAC-GLRSC 195
SGKT AF +P I I S K V ++ISPTREL++QI+ + S
Sbjct: 64 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSV 123
Query: 196 CVYGG--VPKDQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKG 252
+ GG V D + + +++ TPGRL D+++ +D ++ L+LDEADR+L+ G
Sbjct: 124 LLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMG 183
Query: 253 FEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQ 312
F++ + II + R+T +F+AT + V +LA + + ++V G + +K T
Sbjct: 184 FQKQVNYIISRL-PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISG-----AESKSKTS 237
Query: 313 IVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIF----ALYKKEASRVERNLKYNGYDVA 368
+ + + KN K+++F A + +
Sbjct: 238 SGLYCEYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFF 297
Query: 369 AIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI 428
+ HG + Q+ R AL F +LL TDVAARGLDIP + V+ P + ++HR+
Sbjct: 298 STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRV 357
Query: 429 GRTGRAGQYGTAHTLFTEQE 448
GRT R + G A +E
Sbjct: 358 GRTARMERQGRAIVFLMPKE 377
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 140 bits (354), Expect = 3e-33
Identities = 95/340 (27%), Positives = 168/340 (48%), Gaps = 14/340 (4%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ +Q P + G DV+ A++G GKT F + + + + V VLV+
Sbjct: 65 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMCH 121
Query: 172 TRELASQIYDNLIVLTDAC-GLRSCCVYGGVPKDQQREDLRRS--QVVVATPGRLLDLIE 228
TRELA QI + ++ +GG+ + E L+++ +VV TPGR+L L
Sbjct: 122 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 181
Query: 229 EGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
S++L H+ + +LDE D+MLE+ D+++I R T +Q +MF+AT KE+R +
Sbjct: 182 NKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-EKQVMMFSATLSKEIRPVCR 240
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
FM +P+++ + + +L+ + V++ D + + ++V+IF
Sbjct: 241 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL------EFNQVVIFV 294
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
+ + + L + AIH + Q++R +FK + +L+AT++ RG+DI
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 408 NVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
V N P + Y+HR+ R GR G G A T +++
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 394
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 140 bits (353), Expect = 4e-33
Identities = 99/368 (26%), Positives = 179/368 (47%), Gaps = 15/368 (4%)
Query: 74 FLKENEVTVSDPSGSNIV-PYLDFSQVSFIDQI--QKEISKFPKPTPIQAVSWPYLLAGK 130
+ K + +T++ + N+ P L F + F I Q E + PTPIQA +W GK
Sbjct: 11 YRKRHNITLTSWNMRNLPEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGK 70
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK---VLVISPTRELASQIYDNLIVLT 187
+++ I+ G+GKT + +P I + K VL++ RE A + ++ T
Sbjct: 71 NIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYT 130
Query: 188 DACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS--VDLSHVNYLVLDEA 245
+ LR+ C+ G + Q + ++VA+ GRLL +I+ V+L YLVLD
Sbjct: 131 NPLELRTHCLLG----NSQWQGHAECDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNI 186
Query: 246 DRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELS 305
DRM++ G E +I +++ + R + Q ++ + +W ++ +A+ F+ + + +G + +
Sbjct: 187 DRMIDVGLEGNICRLLCRLRPHA-QLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIG 245
Query: 306 AN-KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNG 364
+ I Q VEVV+ + KV+I+ +K + +L N
Sbjct: 246 VRLQNIRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELV-DLIRNC 304
Query: 365 YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 424
IHG + Q+ +++F G N+++AT + + LD+P ++ VIN FP ++ Y
Sbjct: 305 VPCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKY 364
Query: 425 VHRIGRTG 432
V R+ RTG
Sbjct: 365 VQRMSRTG 372
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 137 bits (345), Expect = 4e-32
Identities = 115/397 (28%), Positives = 186/397 (45%), Gaps = 31/397 (7%)
Query: 72 DEFLKENEVTVSDPSGSNIVPYLD---FSQVSFIDQIQKEI---SKFPKPTPIQAVSWPY 125
D L+E E + S PY F ++ ++ K + KF KP+ IQA+S P
Sbjct: 66 DSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPM 125
Query: 126 LLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNL 183
++ K +I A GSGKT F + ++ + + + L I PTRELA+Q + L
Sbjct: 126 IMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPT---LREPQALCICPTRELANQNMEVL 182
Query: 184 IVLTDACGLRSCCVYG----GVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNY 239
+ G+ + G P + + + VV+ TPG L + + L+H+
Sbjct: 183 QKMGKFTGITAELAVPDSTRGAPAATRGAPVS-AHVVIGTPGTLKKWMAFKRLGLNHLKI 241
Query: 240 LVLDEADRMLEK-GFEEDIKKIIRQTRSTSR--QTLMFTATWPKEVRELASSFMSEPVKV 296
LV DEAD ML GF +D KI++ + Q L+F+AT+ + V++ + + +P ++
Sbjct: 242 LVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQL 301
Query: 297 SIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRV 356
+ R++L+ + + +VV P G + +IF K A +V
Sbjct: 302 FV-KREDLALDS--VKQYKVVCPKEQNKIEVIKDQIMELGDI--GQTIIFVKTKASAQKV 356
Query: 357 ERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLT 416
+ L GYDV ++HG+L++ R + + EFK +L+ATDV ARG D V V+N
Sbjct: 357 HKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYN 416
Query: 417 FPLTVED-------YVHRIGRTGRAGQYGTAHTLFTE 446
P E Y+HR+GR GR G+ G L +
Sbjct: 417 LPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLD 453
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 136 bits (342), Expect = 8e-32
Identities = 108/362 (29%), Positives = 177/362 (48%), Gaps = 44/362 (12%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F K TP+QA + P L KD++ A TGSGKT A+ +P + + + + L+++P
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAP 80
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVP---------KDQQREDL-----RRSQVVV 217
TRELA+QI++ V + + + GG K DL + VV+
Sbjct: 81 TRELATQIFN---VTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVI 137
Query: 218 ATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTAT 277
TPGRL +++ + H+ L+LDEAD +++ GF+ ++ II Q R+T +F+AT
Sbjct: 138 GTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQL-PKQRRTGLFSAT 194
Query: 278 WPKEVRELASSFMSEPVKVSIGNRDELSANKRIT-QIVEVVDPFRXXXXXXXXXXXYHSG 336
+ + SSF+ K++ G R+ + + +T + ++ P Y
Sbjct: 195 ----MNDTVSSFL----KIA-GLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQ 245
Query: 337 -------PTKNDKVLIFALYKKEASRVERNLKYNGY----DVAAIHGDLSQQQRTQALNE 385
+ +K ++F + AS N + Y ++ A+HG Q R++ +
Sbjct: 246 CMIHLLCTIEYEKAIVF--FSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEK 303
Query: 386 F-KAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF 444
F K+ K +L TD+A+RGLDIPNV V+ L PL + + HR GR GRAG+ G A L
Sbjct: 304 FKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLL 363
Query: 445 TE 446
+
Sbjct: 364 ND 365
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 136 bits (342), Expect = 8e-32
Identities = 96/357 (26%), Positives = 173/357 (47%), Gaps = 47/357 (13%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ +Q P + G D++ A++G GKT F + + + S + ++ VLV+
Sbjct: 61 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDN--NTCHVLVMCH 118
Query: 172 TRELASQI---YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS--QVVVATPGRLLDL 226
TRELA QI Y+ ++ +GG+ + E L+ +VV TPGR+L L
Sbjct: 119 TRELAFQISKEYERFSKYMPT--VKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILAL 176
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
I ++L + + VLDE D+MLE+ D+++I R T +Q +MF+AT K++R +
Sbjct: 177 IRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPH-GKQVMMFSATLSKDIRPV 235
Query: 286 ASSFMSEPVKVSIGNRDELSA---------------NKRITQIVEVVDPFRXXXXXXXXX 330
FM +P++V + + +L+ NK++ ++++V++
Sbjct: 236 CKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLE------------ 283
Query: 331 XXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGK 390
++V+IF + + + L + IH ++Q++R +FK +
Sbjct: 284 ---------FNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQ 334
Query: 391 CNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ 447
+L+AT++ RG+DI V V N P + Y+HR+ R GR G G A T +++
Sbjct: 335 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 391
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 135 bits (340), Expect = 1e-31
Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 12/367 (3%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ IQ + ++ G+D+ A++G+GKT AF V A+ S D + ++LV++
Sbjct: 58 FETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVT---QILVLAS 114
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDLIEEG 230
TRE+A+Q L G R + GG P + L ++ +VV TPGR+ +I
Sbjct: 115 TREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININ 174
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ-TRSTSRQTLMFTATWPKEVRELASSF 289
+ + ++ V+DEAD ML+ GF+E +K I R+ T Q MF+AT+ +E ++
Sbjct: 175 ELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMFSATYDEEELRVSEEI 234
Query: 290 MSEPVKVSIGNRDE-LSANKRITQIVEVVDPFRXXXXXXXXXXXYH----SGPTKNDKVL 344
+ PV + + D+ L ++ + PFR + + +
Sbjct: 235 LINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSI 294
Query: 345 IFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGL 404
+F K++A V L + ++ I +L+Q +R + LN F+ G L+++ + +RG+
Sbjct: 295 VFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGI 354
Query: 405 DIPNVKTVINLTFPL--TVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGA 462
DI N+ V L P Y+HRIGR+GR G+ G A + E E A+ N
Sbjct: 355 DIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVYEHELKNLKAIERFYNTT 414
Query: 463 GQPVPEE 469
+ +P +
Sbjct: 415 IKELPAD 421
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 134 bits (338), Expect = 2e-31
Identities = 110/369 (29%), Positives = 177/369 (47%), Gaps = 45/369 (12%)
Query: 113 PKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPT 172
P PT +Q PY+LAG+ V I+ETGSGKT ++ +P I+ ++ SGDK ++LVI PT
Sbjct: 77 PHPTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIH-LLESGDK----RLLVIVPT 131
Query: 173 RELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGS 231
REL SQ+ ++ LR + G V + QR + R V ++TPGRL +L+E S
Sbjct: 132 RELVSQVGQVFRKFSEGL-LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLELKS 190
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
+ Y+V+DEADR+++ D+ I+ + + E+AS F +
Sbjct: 191 I--GGFEYVVVDEADRLMQHDIRSDVTFILERMKP-----------------EVASFFSA 231
Query: 292 EPVKVSIGNR---DELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN-------- 340
P + S G R +S + + + V+ KN
Sbjct: 232 TPFEWSGGTRILVGNVSVGRDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNGL 291
Query: 341 --DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATD 398
K+++F + R NL + +H + Q+R +A+ E G+ +L+ATD
Sbjct: 292 EVKKIIVFC----NSIRTCENLHKRFRQLLVLHSRRTMQER-KAVIEALEGERAVLIATD 346
Query: 399 VAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNV 458
+ RG+DI +V V+N P V+ YVHR GRTGR + G A ++ +++ + L +
Sbjct: 347 LGGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGRQ-RKGMALSMICREDREILPKLKRL 405
Query: 459 LNGAGQPVP 467
+ G VP
Sbjct: 406 VEKRGGTVP 414
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 134 bits (338), Expect = 2e-31
Identities = 105/351 (29%), Positives = 166/351 (46%), Gaps = 42/351 (11%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI----------VTSGDKSSSV 164
PT IQ + P ++ K V+ + TGSGKT A+ +P + + + K
Sbjct: 135 PTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRP 194
Query: 165 KVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRL 223
+ +V+ PTREL+ Q+ L RS V GG Q + L + +VV TPGR+
Sbjct: 195 RTVVLCPTRELSEQVC--LHQDYHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRI 252
Query: 224 LDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKI---IRQTRSTSRQTLMFTATWP- 279
L IEEG++ + YLVLDEAD M ++GF +I+K + Q + + F A
Sbjct: 253 LQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQHIKVVNEIVSFQAVQKL 312
Query: 280 -----KEVRELASSFMSEPVKVSIGNRDELSANK-RITQIVEVVDPFRXXXXXXXXXXXY 333
+ + L +S + + + + + +LS + ++ +++V++P
Sbjct: 313 VDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEP-------------- 358
Query: 334 HSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFK--AGKC 391
K KV++F + V+ L N HG++ +QR + L +FK G C
Sbjct: 359 --SLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDC 416
Query: 392 NLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHT 442
L+ TD+AARGLD+ +V V+ FP DY+HR GRT R G G HT
Sbjct: 417 PTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGLFHT 466
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 130 bits (327), Expect = 5e-30
Identities = 117/431 (27%), Positives = 183/431 (42%), Gaps = 88/431 (20%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG---DKSSSVKVLVISPT 172
T +Q + P +L GKDV+ ++TGSGKT A+ +P + + + V LVI PT
Sbjct: 352 TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPT 411
Query: 173 RELASQIYDNLIVLTDA-CGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLD-LIEE 229
REL Q Y+ + L + + GG + ++ LR+ +++ TPGRL+D L+
Sbjct: 412 RELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHT 471
Query: 230 GSVDLSHVNYLVLDEADRMLEKGFEEDIKKII----------RQTRSTSRQTLMFTATWP 279
S L+ + +L+LDEADR+LE G+E D+K+++ Q ++ +AT
Sbjct: 472 ASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLT 531
Query: 280 KEVRELASSFMSEPVKVSIGNRDELSA----------NKRITQIVEVVDPFRXXXXXXX- 328
+V++LA + P + I N DE ++ + I ++EV D
Sbjct: 532 SQVQQLAGLTLKNP--LYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTG 589
Query: 329 -------XXXXYHSGPTKNDKVLIFALYKKEASRVERNLK----YNGYDVAAIHGDLSQQ 377
Y P K V + +L KE + K + ++ H D+ +
Sbjct: 590 VLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNE 649
Query: 378 QRT------------------------QALNEFK-------------------AGKCNLL 394
T Q L FK C LL
Sbjct: 650 ALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLL 709
Query: 395 LATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE----KH 450
ATDV RG+D+P++K V+ T P T D+VHR+GRT RAG+ G A T E +H
Sbjct: 710 -ATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRH 768
Query: 451 LAGALVNVLNG 461
L + + G
Sbjct: 769 LEKKRIRIQQG 779
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 130 bits (326), Expect = 6e-30
Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 49/326 (15%)
Query: 165 KVLVISPTRELASQIYDNLIVLTDACG---LRSCCVYGGVPKDQQREDLRR-SQVVVATP 220
+ +++ P+RELA Q Y+ + +RS + GGV ++Q+ L + + +VV TP
Sbjct: 288 QAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTP 347
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR-----QTLMFT 275
GRL ++I G V L+H + VLDEAD +L++G+ E I ++ +Q + Q ++ +
Sbjct: 348 GRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCS 407
Query: 276 ATWPK-EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXX-- 332
AT EV+++A M P V + D + + + +V +VDP
Sbjct: 408 ATLHAFEVKKMAERLMHFPTWVDLKGEDAVP--ETVHHVVCLVDPQMDTTWQSLRQPIGT 465
Query: 333 ------------YHSGPTKN--------------------DKVLIFALYKKEASRVERNL 360
HS T + D+ +IF K++ +ER L
Sbjct: 466 DGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFL 525
Query: 361 KYNG---YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTF 417
+ G Y +HGD Q+R + L FK + L+ TDVAARGLDI + +IN+T
Sbjct: 526 RQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTL 585
Query: 418 PLTVEDYVHRIGRTGRAGQYGTAHTL 443
P +YVHRIGR GRA + G A +L
Sbjct: 586 PDDKTNYVHRIGRVGRAERMGLAISL 611
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 129 bits (325), Expect = 8e-30
Identities = 106/340 (31%), Positives = 153/340 (44%), Gaps = 57/340 (16%)
Query: 165 KVLVISPTRELASQIYDNLIVLT---DACGLRSCCVYGGVPKDQQREDLRRS-QVVVATP 220
K L++ P+RELA Q +N+ D LR + GGV Q L +VV TP
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKI---IRQTRSTSR--QTLMFT 275
GRL DL+ G ++LS V +LVLDEAD +L +G+ + I ++ I Q S + Q ++ +
Sbjct: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
Query: 276 ATWPK-EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP-----FRXXXXXXXX 329
AT +V++L+ M P V + D S + +V V+P +
Sbjct: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGED--SVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
Query: 330 XXXYHSGPT------------------------------KNDKVLIFALYKKEASRVERN 359
H+ K D+ +IF K + +E+
Sbjct: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY 525
Query: 360 LKYNG---------YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
G + +HGD +R Q L FK G L+ TDVAARG+DI V
Sbjct: 526 FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP 585
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF-TEQEK 449
VIN+T P ++YVHRIGR GRA + G A +L TE+EK
Sbjct: 586 YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK 625
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 129 bits (323), Expect = 1e-29
Identities = 88/299 (29%), Positives = 153/299 (50%), Gaps = 20/299 (6%)
Query: 111 KFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV------ 164
K +PTPIQ S+ ++ G DV+ A TGSGKT AF +P + ++ +K V
Sbjct: 718 KMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPS 777
Query: 165 -KVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR---RSQVVVATP 220
++L+++PTREL +Q + LT GL+ +GG ++ + LR + ++VAT
Sbjct: 778 PRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATM 837
Query: 221 GRLLDLIEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWP 279
GRL D + G V LS + Y+VLDEADRM++ F E++ KII ++QT++F+A++
Sbjct: 838 GRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGERTQQTVLFSASFS 897
Query: 280 KEVR-ELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP-------FRXXXXXXXXXX 331
++++ + F+ E + ++ +AN++I Q + V ++
Sbjct: 898 EDLQSDDLPKFVKEGYTMLQVDKFG-TANEKIDQKILPVPRTEKRDAIYKLLGIDENTVT 956
Query: 332 XYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGK 390
P + K LIF K + + G ++H +Q+QR + L++F+ GK
Sbjct: 957 LLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGK 1015
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 127 bits (318), Expect = 5e-29
Identities = 113/430 (26%), Positives = 193/430 (44%), Gaps = 42/430 (9%)
Query: 94 LDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAI 151
+ F ++ +I K +++ + +PT IQ+ + P LL GKDV+ A TGSGKT + +P I
Sbjct: 9 VQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 152 NNIVTSGDKSSS--VKVLVISPTRELASQIYDNLIVLTDACG--LRSCCVYGGVPKD-QQ 206
I+ S +S V +V++PT++L Q + L ++CG +R + Q
Sbjct: 69 QKILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQ 128
Query: 207 REDLRRS-QVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQT 264
R L S +VVATP LL E GS VDL HV LV+DEAD + G+E+D K++I+
Sbjct: 129 RHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
Query: 265 RSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXX 324
Q ++ +AT +V + ++ PV + + + + ++ Q + + +
Sbjct: 189 -PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAI 247
Query: 325 XXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALN 384
G K +IF +V L+ G ++ +L R ++
Sbjct: 248 LYALLKLRLIRG-----KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTIS 302
Query: 385 EFKAGKCNLLLATD-------------------------VAARGLDIPNVKTVINLTFPL 419
+F G ++++A+D A+RG+D V VIN FP
Sbjct: 303 QFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPR 362
Query: 420 TVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL--NGAGQPVPEELKKFGTHT 477
V Y+HR GRT R G+ + + +E + ++ L + A Q + +K +
Sbjct: 363 DVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFAAQEGEQIIKNYQFKM 422
Query: 478 KKKEHSAYGA 487
++ E Y A
Sbjct: 423 EEVESFRYRA 432
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 125 bits (315), Expect = 1e-28
Identities = 90/337 (26%), Positives = 149/337 (43%), Gaps = 15/337 (4%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI----VTSGDKSSSVKVLVISP 171
T IQ P + + + AETG GKT + +P ++ + V + K ++ +VL+++P
Sbjct: 133 TGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTP 192
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKD-QQREDLRRSQVVVATPGRLLDLIEEG 230
RELA+QI LT L+ + GG K ++VAT G L L+ G
Sbjct: 193 GRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTG 252
Query: 231 SVDLSHVNYLVLDEADRMLEKGFEEDIKKIIR-------QTRSTSRQTLMFTATWPKEVR 283
+ V +LVLDEAD +L+ F + + +R Q Q ++ +AT P R
Sbjct: 253 IYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTR 312
Query: 284 ELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKV 343
E+ + +I ++ ++ + + K +
Sbjct: 313 EILHKVIDVD---TIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPL 369
Query: 344 LIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
++F+ + V L +G + ++GD+ + R +F+ G C++L TDV +RG
Sbjct: 370 IVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRG 429
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
LD + V+N FPL V DY+HR GR GR G A
Sbjct: 430 LDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKA 466
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 124 bits (311), Expect = 3e-28
Identities = 97/363 (26%), Positives = 168/363 (45%), Gaps = 43/363 (11%)
Query: 105 IQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSS-- 162
+Q+ + +PT +Q+ + P LL G+ V+ AETGSGKT ++ +P + ++ S
Sbjct: 141 LQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLP 200
Query: 163 --SVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRR---SQVVV 217
+ + LV+ P+RELA Q+ L + GL + GG + R L R + V+V
Sbjct: 201 IPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLV 260
Query: 218 ATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTR------------ 265
ATPG L ++ + L +++LVLDEAD +L++ F E + I+ ++
Sbjct: 261 ATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPF 320
Query: 266 STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRD-------------ELSANKRITQ 312
+ Q ++ AT+P+ V +L + S +I + L ++ +
Sbjct: 321 NPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADKVAE 380
Query: 313 IVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHG 372
+V ++ +GP + VL+F + + L + + G
Sbjct: 381 LVHIL---------KHRDRAERTGP--SGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQG 429
Query: 373 DLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTG 432
+ R F+ ++LL TD+A+RGLD V+ V+N FP T++DY+HR GR G
Sbjct: 430 QMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVG 489
Query: 433 RAG 435
R G
Sbjct: 490 RVG 492
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 123 bits (309), Expect = 6e-28
Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 31/321 (9%)
Query: 159 DKSSSVKV--------LVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL 210
DKS++ K LV++PTRELA Q+ ++ + G+++ + GG+ +Q+ L
Sbjct: 375 DKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRML 434
Query: 211 -RRSQVVVATPGRLLDLIEEGSV---DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS 266
RR ++VVATPGRL +LI+E +L + LV+DEADRM+EKG ++ +++
Sbjct: 435 NRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLND 494
Query: 267 T----SRQTLMFTAT------------WPKEVRELASSFMSEPVKVSIGNRDE---LSAN 307
+ RQTL+F+AT K +++ + + + IG R + +
Sbjct: 495 SQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLT 554
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
+ + + + Y+ + L+FA R+ LK
Sbjct: 555 RNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMP 614
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 427
+H + Q+QR + L +F + +LLATDVAARGLDIP V+ VI+ P T E YVHR
Sbjct: 615 LTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHR 674
Query: 428 IGRTGRAGQYGTAHTLFTEQE 448
GRT RA G + L ++
Sbjct: 675 SGRTARATNEGLSLMLIGPED 695
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 123 bits (308), Expect = 7e-28
Identities = 103/404 (25%), Positives = 179/404 (43%), Gaps = 58/404 (14%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F ++ ++ + ++K KPT IQ + PY+L GKDV+ A+TGSGKT A+ +P +
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 154 IVTS---GDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL 210
+ ++ K + ++ P+REL Q+Y + L + C ++ V + D+
Sbjct: 108 LFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQ--LTSSMSASDM 165
Query: 211 RRS-----QVVVATPGRLLDLIEEGSVDLSHV----NYLVLDEADRMLEKGFEEDIKKII 261
R + +++V+TP + G ++ + V + LVLDEAD +L G+E++++ +
Sbjct: 166 RNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV- 224
Query: 262 RQTRSTSR--QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP 319
T R Q L+ +AT +V +L + P+ +++ ++ + + V+
Sbjct: 225 --TSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL--TEDNDKEEAVPSNVQQFWI 280
Query: 320 FRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQR 379
K+LIF R++ L+ G A ++G+L Q R
Sbjct: 281 SCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSR 340
Query: 380 TQALNEFKAGKCNLLLATD-----------------------------------VAARGL 404
L +F AG + L+ATD RG+
Sbjct: 341 LHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGI 400
Query: 405 DIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
D V TVIN P +V Y+HRIGRTGRA G++ +L + E
Sbjct: 401 DFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDE 444
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 122 bits (307), Expect = 1e-27
Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 30/266 (11%)
Query: 188 DACGLRSCCVYGGVPKDQQRED-----LRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
+A + V GG+ RED L ++V+ATPG L+D++E + LS Y+VL
Sbjct: 357 EAARYPTVAVIGGI----SREDWGFRLLMGCEIVIATPGHLIDVLENRYLVLSCCTYVVL 412
Query: 243 DEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRD 302
DEADRM++ GFE D++KI+ + + ++ ++ ++F S G R
Sbjct: 413 DEADRMIDVGFEPDVQKILEHMPQSEARH-----DESEDPEKMLANFES-------GKR- 459
Query: 303 ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKY 362
++R+ Q+ + + + + + + IF KK + ++L+
Sbjct: 460 --KPHERVEQVFLMSESEKRKKLLEILKQGF------DPAITIFVNQKKGCDVLAKSLEK 511
Query: 363 NGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVE 422
GY+ +HG Q+QR AL+ K G ++L+ TDVA G+DI +V V+N ++
Sbjct: 512 MGYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNID 571
Query: 423 DYVHRIGRTGRAGQYGTAHTLFTEQE 448
DY+HRIGR G+AG+ G A T T+++
Sbjct: 572 DYIHRIGRMGQAGKSGVAITFLTKED 597
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 122 bits (306), Expect = 1e-27
Identities = 112/425 (26%), Positives = 192/425 (44%), Gaps = 71/425 (16%)
Query: 105 IQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV 164
+QK++ P ++A + P +D+ A TGSGKT AF +P + + D V
Sbjct: 163 VQKQVI----PWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVD--CKV 216
Query: 165 KVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL---------RRSQV 215
+ LV+ P ELA Q+Y + L L C + + ++E L ++ +
Sbjct: 217 RALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADI 276
Query: 216 VVATPGRLLD-LIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTL-- 272
VV TPGRL+D L L + +LV+DEADR+++ F+ + + + T+ Q L
Sbjct: 277 VVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAG 336
Query: 273 ---------------------MFTATWPKEVRELASSFMSEP--------VKVSIGNRDE 303
+F+AT ++ +L + +P + V +E
Sbjct: 337 TQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEE 396
Query: 304 LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK------------ 351
+ + +T + V + Y + + +FAL +K
Sbjct: 397 GADTEALTDPGQFVGRY---TTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNS 453
Query: 352 --EASRVERNLK--YNGYD--VAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
+A+R+ LK + Y V+ + G+LS + R + L +F AGK N L+ +D ARG+D
Sbjct: 454 SDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGID 513
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
+ +V V++ P + Y+HR+GRT RAG+ GTA T+ TEQ+ L +L+ A +
Sbjct: 514 VADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTL---FKKILSDANKG 570
Query: 466 VPEEL 470
+ EE+
Sbjct: 571 LGEEI 575
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 121 bits (303), Expect = 3e-27
Identities = 103/383 (26%), Positives = 167/383 (42%), Gaps = 40/383 (10%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV----TSGDKSSSVKVLVI 169
+PT IQ + P L GKD++ A TGSGKT A+ +P + ++ T +V+ LV+
Sbjct: 29 RPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVL 88
Query: 170 SPTRELASQIYDNLIVLTDACG--LRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLDL 226
PT+ELA Q + L C +R V QR L + VVV TP R+L
Sbjct: 89 VPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSH 148
Query: 227 IEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
+++ S+ L + LV+DEAD + GFEE++K ++ + LM +AT+ ++V+ L
Sbjct: 149 LQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLM-SATFNEDVQAL 207
Query: 286 ASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
+ PV + + +L ++ Q V + K L+
Sbjct: 208 KELILHNPVTLKL-QESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLS---LIRGKSLL 263
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDV------ 399
F + + R+ L+ ++G+L + R +++F G + ++ATD
Sbjct: 264 FVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAP 323
Query: 400 ---------------------AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
ARG+D +V V+N P T E Y+HR GRT RA G
Sbjct: 324 VKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPG 383
Query: 439 TAHTLFTEQEKHLAGALVNVLNG 461
T E+ G + +L+G
Sbjct: 384 IVLTFVLPTEQFHLGKIEELLSG 406
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 120 bits (302), Expect = 4e-27
Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
KPTP+Q P +L G+D +G A+TGSGKT AF +P + + + + LV++PTR
Sbjct: 24 KPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL---SEDPYGIFCLVLTPTR 80
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL-RRSQVVVATPGRLLD-LIEEGS 231
ELA QI + VL GL+ C + GG+ Q +L R+ VV+ATPGRL D L +
Sbjct: 81 ELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT 140
Query: 232 VDLSHVNYLVLDEADRMLEKG---FEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASS 288
+ + +LV+DEADR+LE+G F D++ I+ RQTL+F+AT +REL
Sbjct: 141 FSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV-PARRQTLLFSATLTDTLRELQGL 199
Query: 289 FMSEP 293
++P
Sbjct: 200 ATNQP 204
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 119 bits (299), Expect = 8e-27
Identities = 102/381 (26%), Positives = 171/381 (44%), Gaps = 32/381 (8%)
Query: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
T +Q +S +LL DV+ + TGSGKT AF +P + I + + + + L++SP+REL
Sbjct: 33 TDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSREL 92
Query: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQV--VVATPGRLLDLIEEGSVD 233
SQI + + L V GG D+ + + V +VATPGRL +I+
Sbjct: 93 CSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTL 152
Query: 234 LSH----VNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSF 289
++ + LV+DEADR E FE+ +++I+ R+T +F+AT KE +L
Sbjct: 153 IARKMRTLQLLVIDEADRFNEIQFEDHMREIL-SCIPKQRRTGLFSATQVKEEDDLMVFG 211
Query: 290 MSEPVKVSIGNRDELSANK---------RITQIVEVVDPFRXXXXXXXXXXXYHSGPTKN 340
+ +V + +A R + V F + P+ N
Sbjct: 212 LRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFF---PSCN 268
Query: 341 DKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
+ ++++ + + A+HG S R + F ++++TDV
Sbjct: 269 SVRYFYKIFERCLGK---------RPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVM 319
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLN 460
ARG+DI ++ VI P +VHR GRT R G+ G A L ++ A VN L+
Sbjct: 320 ARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQL----AYVNFLD 375
Query: 461 GAGQPVPEELKKFGTHTKKKE 481
+ +E+K +++K E
Sbjct: 376 NHEKVKLDEIKVPTNNSRKSE 396
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 119 bits (299), Expect = 8e-27
Identities = 102/340 (30%), Positives = 161/340 (47%), Gaps = 46/340 (13%)
Query: 85 PSGSNIVPYLDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTF 144
P S + P L + +D+ S F TP+QA + P+L + KDV+ A TGSGKT
Sbjct: 15 PRFSELKPPLSEDIIEALDR-----SGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTL 69
Query: 145 AFGVPAINNIVTSGD---KSSSVKVLVISPTRELASQIYD-NLIVLTDACGLRSCCVYGG 200
AF +P I I S K V ++ISPTREL++QI+ V D R
Sbjct: 70 AFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCRE------ 123
Query: 201 VPKDQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKGFEEDIKK 259
V D + + +++ TPGRL D+++ +D ++ L+LDEADR+L+ GF++ +
Sbjct: 124 VEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNY 183
Query: 260 IIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP 319
II + R+T +F+AT + V +LA + + P + A+++ +Q+V ++
Sbjct: 184 IISRL-PKQRRTGLFSATQTQAVADLAKAGLRNPYL-------KCEADQKSSQLVHLLI- 234
Query: 320 FRXXXXXXXXXXXYHSGPTKNDKVLIF----ALYKKEASRVERNLKYNGYDVAAIHGDLS 375
KN K+++F A + + HG +
Sbjct: 235 -----------------ENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMD 277
Query: 376 QQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINL 415
Q+ R AL F +LL TDVAARGLDIP + + +L
Sbjct: 278 QKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSL 317
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 119 bits (298), Expect = 1e-26
Identities = 103/400 (25%), Positives = 172/400 (42%), Gaps = 52/400 (13%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
F+ ++I K I + + K +Q L K+++G A TGSGKT AF +P +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQK 150
Query: 154 IVT---SGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDL 210
++ + D S ++I+PT+EL +QIY + L+ A + +++ L
Sbjct: 151 LIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVWL 210
Query: 211 R-RSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR 269
RS VVV TPG+LL + + V+YLV+DEAD +L G+EE++ K IR +
Sbjct: 211 EDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIK-IRSKLPPTY 269
Query: 270 QTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRIT--QIVEVVDPFRXXXXXX 327
Q LM +AT ++ L FM+ PV +L + ++T Q+ D R
Sbjct: 270 QCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVA 329
Query: 328 XXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFK 387
G + ++F ++ L+ G ++ + R +N+F
Sbjct: 330 MFKLKLIVG-----RSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFN 384
Query: 388 AGKCNLLLATDVA--------------------------------------ARGLDIPNV 409
G +++A+DV+ +RG+D +V
Sbjct: 385 EGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHV 444
Query: 410 KTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
V+N FP T + Y+HR+GRT R GTA + E+
Sbjct: 445 SNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSER 484
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 118 bits (296), Expect = 2e-26
Identities = 104/353 (29%), Positives = 164/353 (45%), Gaps = 33/353 (9%)
Query: 108 EISKFPKPTPIQAVSWPYLLAGK----DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSS 163
E++ + PTP+Q + P+LL G+ +V+ + + +F ++I KS
Sbjct: 132 ELTYYTHPTPLQ--NMPFLLLGEKKRLNVLCPSRVWENCSISF-TRTESDIYRWSRKSFE 188
Query: 164 VKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGR 222
P +E Y+ + + + C VYG QQ + L ++VATPG
Sbjct: 189 GCEGKWKPQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGG 248
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR---QTLMFTATWP 279
L+DL+E G + L YLVLDEADRML+ GF I I+ Q + +MF+AT+P
Sbjct: 249 LVDLMERGKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFP 308
Query: 280 KEVRELASSFMSEPVKVSIGNRDELSANKRITQ-IVEVVDPFRXXXXXXXXXXXYHSGPT 338
E++ LA F+ E + +++G S ++ ITQ +V V +P + + P
Sbjct: 309 NEIQMLARDFLDEYIFLAVGRVG--STSETITQEVVWVEEPDKRSFLLDLL-----NAPG 361
Query: 339 KNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATD 398
K+ L+F KK +E L + Y +IHGD SQ+ R + G ++LL +
Sbjct: 362 KDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDR-------EGGPSSVLLGEN 414
Query: 399 VAARGLDIPNVK-------TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLF 444
+ G ++K T N P +E+YV IG TG G G A + F
Sbjct: 415 PNSSGYSCGSMKTRHFKCETCFNFDLPSDIEEYVPCIGCTGCVGIQGLATSFF 467
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 118 bits (295), Expect = 2e-26
Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 72/394 (18%)
Query: 112 FPKPTPIQAVSWPYLLAGK-DVIGIAETGSGKTFAFGVPAINNI------VTSGDKSSSV 164
F PT IQ+ + P L K D+I A TGSGKT A+ +P I I + +G+++ ++
Sbjct: 37 FQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGTL 96
Query: 165 KVLVISPTRELASQIYDNLIVLTDACG--LRSCCVYGGVPKDQQREDLRRSQ--VVVATP 220
++++ PTRELA Q+Y+ L L C +R+ + + D L Q ++V TP
Sbjct: 97 GIILV-PTRELAQQVYNVLEKLVLYCSKDIRTLNISSDM-SDSVLSTLLMDQPEIIVGTP 154
Query: 221 GRLLDLIEE--GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQ-TRSTSRQTLMFTAT 277
G+LLDL++ S+ L+ + +LV+DE D +L G+++D+ KI + QT + +AT
Sbjct: 155 GKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNLQTFLMSAT 214
Query: 278 WPKEVRELASSFMSEPVKVSIGNRD-ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSG 336
+++ L F P + + + + NK + V+V + + G
Sbjct: 215 LNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKG 274
Query: 337 PTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLA 396
K LIF R++ ++ G ++ +L R +++F LL+A
Sbjct: 275 -----KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIA 329
Query: 397 TD--------------------------------------------------VAARGLDI 406
TD +RG+D
Sbjct: 330 TDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDF 389
Query: 407 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
NV V+N P T + YVHR+GRT R G+ GTA
Sbjct: 390 KNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTA 423
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 117 bits (294), Expect = 3e-26
Identities = 114/430 (26%), Positives = 196/430 (45%), Gaps = 38/430 (8%)
Query: 66 ASQSDIDEFLKEN--------EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKP 115
A+QS +++ ++ N EV DP+ S + F ++ Q+ + + F +P
Sbjct: 56 AAQSLLNKLIRSNLVDNTNQVEVLQRDPN-SPLYSVKSFEELRLKPQLLQGVYAMGFNRP 114
Query: 116 TPIQAVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+ IQ + P +LA +++I +++G+GKT AF + ++ + S + L +SPT
Sbjct: 115 SKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPS---DRYPQCLCLSPTY 171
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS-V 232
ELA Q +I Y +R Q+V+ TPG +LD + +
Sbjct: 172 ELALQT-GKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFI 230
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
D + VLDEAD M+ +D I++ + Q L+F+AT+ V + A + +
Sbjct: 231 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 290
Query: 293 PVKVSIGNRDE-LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
P + + +E L K+ + D Y G + +IF +K
Sbjct: 291 PNVIKLKREEETLDTIKQYYVLCSSRDE-----KFQALCNLY--GAITIAQAMIFCHTRK 343
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
AS + L G+ VA + G++ +QR + F+ GK +L+ T+V ARG+D+ V
Sbjct: 344 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 403
Query: 412 VINLTFPLTV------EDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
VIN P+ E Y+HRIGRTGR G+ G A + KH +N+LN +
Sbjct: 404 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH----SMNILNRIQEH 457
Query: 466 VPEELKKFGT 475
+++++ T
Sbjct: 458 FNKKIERLDT 467
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 117 bits (294), Expect = 3e-26
Identities = 120/430 (27%), Positives = 197/430 (44%), Gaps = 44/430 (10%)
Query: 70 DIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLL 127
D+D++ + N+ D + F+++ + + K + + F +P IQA+++ ++
Sbjct: 352 DMDDWRERNKT--KDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVI 409
Query: 128 AGKDVIGIAETGSGKTFAFGVPAINNI----VTSGDKSSS--VKVLVISPTRELASQIYD 181
GK I ++GSGKT A+ VP I + + KSS +V+V+ PT ELASQ+
Sbjct: 410 DGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLA 469
Query: 182 NLIVLTDA-CGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLLDLIEEGSVDLSHVNY 239
N ++ + RS V GG + Q E+L + V++ATPGR L+ EG + LS++
Sbjct: 470 NCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRC 529
Query: 240 LVLDEADRML-EKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV-RELASSFMSEPVKVS 297
+LDE D + + FE ++ +I + T+ Q L TAT P E+ +L F +V
Sbjct: 530 AILDEVDILFGDDEFEAALQNLINSSPVTA-QYLFVTATLPLEIYNKLVEVF--PDCEVV 586
Query: 298 IGNRDELSANKRITQIVE--VVDPFRXXXXXXXXXXXYHSGPT---------KNDKVLIF 346
+G R R++ +E +VD + + T K +IF
Sbjct: 587 MGPRVH-----RVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIF 641
Query: 347 ALYKKEASRVER-----NLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCN----LLLAT 397
+ +VE + K V H LSQ+ R + EF + + L+ T
Sbjct: 642 CNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCT 701
Query: 398 DVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ-YGTAHTLFTEQEKHLAGALV 456
D A+RG+D V V+ FP +YV R+GRT R + G A ++ LA ++
Sbjct: 702 DRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRII 761
Query: 457 NVLNGAGQPV 466
N G PV
Sbjct: 762 E-RNEKGHPV 770
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 117 bits (293), Expect = 4e-26
Identities = 113/430 (26%), Positives = 197/430 (45%), Gaps = 38/430 (8%)
Query: 66 ASQSDIDEFLKEN--------EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKP 115
A+QS +++ ++ N EV DP+ S + F ++ Q+ + + F +P
Sbjct: 57 AAQSLLNKLIRSNLVDNTNQVEVLQRDPN-SPLYSVKSFEELRLKPQLLQGVYAMGFNRP 115
Query: 116 TPIQAVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+ IQ + P +LA +++I +++G+GKT AF + ++ + + + + L +SPT
Sbjct: 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---NKYPQCLCLSPTY 172
Query: 174 ELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS-V 232
ELA Q +I Y +R Q+V+ TPG +LD + +
Sbjct: 173 ELALQT-GKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFI 231
Query: 233 DLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSE 292
D + VLDEAD M+ +D I++ + Q L+F+AT+ V + A + +
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 291
Query: 293 PVKVSIGNRDE-LSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKK 351
P + + +E L K+ + D Y G + +IF +K
Sbjct: 292 PNVIKLKREEETLDTIKQYYVLCSSRDE-----KFQALCNLY--GAITIAQAMIFCHTRK 344
Query: 352 EASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKT 411
AS + L G+ VA + G++ +QR + F+ GK +L+ T+V ARG+D+ V
Sbjct: 345 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404
Query: 412 VINLTFPLTV------EDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
VIN P+ E Y+HRIGRTGR G+ G A + KH +N+LN +
Sbjct: 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH----SMNILNRIQEH 458
Query: 466 VPEELKKFGT 475
+++++ T
Sbjct: 459 FNKKIERLDT 468
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 114 bits (286), Expect = 3e-25
Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 20/338 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F KP+ IQ + GKDV ++ GSGKT + + I + + ++V++++P
Sbjct: 16 FEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC---EDAHLQVILLAP 72
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS 231
R +A + ++ L L + + C+ D E+ + S V++ TP L I
Sbjct: 73 QRGMAQRAHEQLKSLGRNLNVNATCL----GFDTTAENDKISHVLMGTPKDFLSNIPS-- 126
Query: 232 VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMS 291
D S + VLDEAD ML KGF++ I ++ R + Q ++ +AT P EV ++ + FM
Sbjct: 127 -DTSRIKMFVLDEADEMLSKGFKDQIYEVFR-SMPQDVQVVLLSATMPSEVLDVTNRFMR 184
Query: 292 EPVKVSIGNRDELSANKRITQIVEVV-DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYK 350
+P+++ + +DEL+ + V D ++ ++ + LIF +
Sbjct: 185 DPIRILV-KKDELTLEGIRQFYINVQKDEWKFNCLCDLLKT------SRETQALIFCNTR 237
Query: 351 KEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVK 410
+ +++ L V+ HG++ +R + +F + +L+ TD+ ARG++I
Sbjct: 238 RRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNI-RKS 296
Query: 411 TVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
+IN +E+Y+ R GR G G G + FTE +
Sbjct: 297 LIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTEND 334
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 113 bits (283), Expect = 6e-25
Identities = 86/346 (24%), Positives = 163/346 (46%), Gaps = 36/346 (10%)
Query: 131 DVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDAC 190
D++ A TGSGKT A+ +P + + + + ++ ++I PT+ L +Q+Y L LT
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKR--QINRLRCIIIVPTKLLINQVYTTLTKLTQGT 286
Query: 191 GLR-SCCVYGGVPKDQQRE-DLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRM 248
L S KD+ ++ +++ TPGRL+D + S++L ++ +L++DEADR+
Sbjct: 287 SLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRL 346
Query: 249 LEKGFEEDIKKIIRQTRSTSRQTL-------MFTATWPKEVRELASSFMSEPVKVSIGNR 301
L + F+ K++ ++ TL +F+AT +L + +P K+ +
Sbjct: 347 LNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKP-KLFLKQT 405
Query: 302 DEL--------SANKRITQIVEVVDP---------FRXXXXXXXXXXXY---HSGPTKND 341
D+L N I V P F + + +
Sbjct: 406 DKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLS 465
Query: 342 KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEF----KAGKCNLLLAT 397
K+L + S V +NL+ + +++ + S+ + + + F ++ +L+ T
Sbjct: 466 KLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITT 525
Query: 398 DVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTL 443
D+ +RG+DI ++ VIN P++ + YVHR+GRT RA + G+A+ L
Sbjct: 526 DIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNL 571
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 113 bits (282), Expect = 8e-25
Identities = 95/347 (27%), Positives = 169/347 (48%), Gaps = 21/347 (6%)
Query: 112 FPKPTPIQAVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVI 169
F +P+ IQ ++ P +LA +++I +++G+GKT AF + ++ + + L +
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV---NALELFPQCLCL 59
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLD-LIE 228
+PT ELA Q + + C + +Y R Q+++ TPG +LD +
Sbjct: 60 APTYELALQTGRVVEQMGKFC-VDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFK 118
Query: 229 EGSVDLSHVNYLVLDEADRMLE-KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+DL+ + VLDEAD M++ +GF + +I R S Q L+F+AT+ V A
Sbjct: 119 LKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC-QMLLFSATFEDSVWHFAE 177
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ +P + + ++EL+ N I Q + + + G + +IF
Sbjct: 178 RIIPDPNVIKL-RKEELTLNN-IRQYYVLCEHRKDKYQALCNIY----GSITIGQAIIFC 231
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
++ A + + +G+ V+ + G+L+ +QR + F+ GK +L+ T+V ARG+D+
Sbjct: 232 QTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVK 291
Query: 408 NVKTVINLTFPL------TVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
V V+N P+ E Y+HRIGRTGR G+ G A + E
Sbjct: 292 QVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 338
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 112 bits (280), Expect = 1e-24
Identities = 94/336 (27%), Positives = 146/336 (42%), Gaps = 47/336 (13%)
Query: 161 SSSVKVLVISPTRELASQIYDNLIVLT---DACGLRSCCVYGGVPKDQQREDLRRS-QVV 216
SS+ +++ PTREL Q + N+ D+ +R + G +Q L +V
Sbjct: 303 SSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCDIV 362
Query: 217 VATPGRLLDLIEEGSVDLSHVNYLVLDEADRML--EKGFEEDIKKIIR-----QTRSTSR 269
V TP R+ DLI G + ++ ++V+DE D+ L + I+ I R T R
Sbjct: 363 VGTPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRR 422
Query: 270 QTLMFTATWPK-EVRELASSFMSEPVKVSIGNRDELSAN-----------------KRIT 311
Q + +AT EV A MS P + + D +SA+ +++
Sbjct: 423 QVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMH 482
Query: 312 QIVEVVD----------PFRXXXXXXXXXXXYHSG--------PTKNDKVLIFALYKKEA 353
Q V + D P G + DK ++F K++
Sbjct: 483 QQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTKQQC 542
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+E L+ N A +HGD S ++R +L FK G L+ +DV ARGLD+ V VI
Sbjct: 543 DHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVPFVI 602
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
++T P YVHRIGR GRA + G + +L +E E+
Sbjct: 603 SVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEE 638
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 112 bits (279), Expect = 2e-24
Identities = 95/347 (27%), Positives = 168/347 (48%), Gaps = 21/347 (6%)
Query: 112 FPKPTPIQAVSWPYLLAG--KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVI 169
F +P+ IQ ++ P +LA +++I +++G+GKT AF + ++ + + L +
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV---NALELFPQCLCL 59
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLD-LIE 228
+PT ELA Q + + C + +Y R Q+++ TPG +LD +
Sbjct: 60 APTYELALQTGRVVEQMGKFC-VDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFK 118
Query: 229 EGSVDLSHVNYLVLDEADRMLE-KGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELAS 287
+DL+ + VLDEAD M++ +GF + +I R S Q L+F+AT+ V A
Sbjct: 119 LKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC-QMLLFSATFEDSVWHFAE 177
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ +P + + ++EL+ N I Q + + + G + +IF
Sbjct: 178 RIIPDPNVIKL-RKEELTLNN-IRQYYVLCEHRKDKYQALCNIY----GSITIGQAIIFC 231
Query: 348 LYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIP 407
++ A + + +G+ V+ + G+L+ +QR F+ GK +L+ T+V ARG+D+
Sbjct: 232 QTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVK 291
Query: 408 NVKTVINLTFPL------TVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
V V+N P+ E Y+HRIGRTGR G+ G A + E
Sbjct: 292 QVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 338
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 111 bits (278), Expect = 2e-24
Identities = 108/409 (26%), Positives = 180/409 (43%), Gaps = 43/409 (10%)
Query: 79 EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAG--KDVIG 134
+V DP S + F ++ ++ K + F PT IQ + P LL ++I
Sbjct: 195 DVQRQDPK-SPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 253
Query: 135 IAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQI---YDNLIVLTDACG 191
A++G+GKT AF + + I + + + ++PT ELA QI + + D
Sbjct: 254 QAQSGTGKTAAFVLTMLCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLK 310
Query: 192 LRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRML- 249
+ G + + R+ Q+V+ TPG D +++ +D S + LVLDEAD M+
Sbjct: 311 IHYAIKGGNMAAMRGRK--LTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIY 368
Query: 250 EKGFEEDIKKIIRQTR--STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSAN 307
+GF + I S S Q+++F+AT+ + V A+ + + V + ++ N
Sbjct: 369 HQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPN 428
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
I + +SG V IF K + N++ G+ V
Sbjct: 429 -----IKQFYVQCACRDSKYAAIVNLYSGLAVASSV-IFCHTKASVMWLYENMRARGHQV 482
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED---- 423
+HGD++ +R + FK G +L+ T+V ARG+D+ V VIN P+ D
Sbjct: 483 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTP 542
Query: 424 -------------YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
Y+HRIGRTGR G+ G A L ++ + ++NVL
Sbjct: 543 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSED---SMNMINVL 588
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 111 bits (278), Expect = 2e-24
Identities = 108/409 (26%), Positives = 180/409 (43%), Gaps = 43/409 (10%)
Query: 79 EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAG--KDVIG 134
+V DP S + F ++ ++ K + F PT IQ + P LL ++I
Sbjct: 220 DVQRQDPK-SPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 278
Query: 135 IAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQI---YDNLIVLTDACG 191
A++G+GKT AF + + I + + + ++PT ELA QI + + D
Sbjct: 279 QAQSGTGKTAAFVLTMLCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLK 335
Query: 192 LRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRML- 249
+ G + + R+ Q+V+ TPG D +++ +D S + LVLDEAD M+
Sbjct: 336 IHYAIKGGNMAAMRGRK--LTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIY 393
Query: 250 EKGFEEDIKKIIRQTR--STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSAN 307
+GF + I S S Q+++F+AT+ + V A+ + + V + ++ N
Sbjct: 394 HQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPN 453
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
I + +SG V IF K + N++ G+ V
Sbjct: 454 -----IKQFYVQCACRDSKYAAIVNLYSGLAVASSV-IFCHTKASVMWLYENMRARGHQV 507
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED---- 423
+HGD++ +R + FK G +L+ T+V ARG+D+ V VIN P+ D
Sbjct: 508 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTP 567
Query: 424 -------------YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
Y+HRIGRTGR G+ G A L ++ + ++NVL
Sbjct: 568 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSED---SMNMINVL 613
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 111 bits (278), Expect = 2e-24
Identities = 108/409 (26%), Positives = 180/409 (43%), Gaps = 43/409 (10%)
Query: 79 EVTVSDPSGSNIVPYLDFSQVSFIDQIQKEIS--KFPKPTPIQAVSWPYLLAG--KDVIG 134
+V DP S + F ++ ++ K + F PT IQ + P LL ++I
Sbjct: 604 DVQRQDPK-SPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 662
Query: 135 IAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQI---YDNLIVLTDACG 191
A++G+GKT AF + + I + + + ++PT ELA QI + + D
Sbjct: 663 QAQSGTGKTAAFVLTMLCRIDVN---LMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLK 719
Query: 192 LRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRML- 249
+ G + + R+ Q+V+ TPG D +++ +D S + LVLDEAD M+
Sbjct: 720 IHYAIKGGNMAAMRGRK--LTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIY 777
Query: 250 EKGFEEDIKKIIRQTR--STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSAN 307
+GF + I S S Q+++F+AT+ + V A+ + + V + ++ N
Sbjct: 778 HQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPN 837
Query: 308 KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDV 367
I + +SG V IF K + N++ G+ V
Sbjct: 838 -----IKQFYVQCACRDSKYAAIVNLYSGLAVASSV-IFCHTKASVMWLYENMRARGHQV 891
Query: 368 AAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED---- 423
+HGD++ +R + FK G +L+ T+V ARG+D+ V VIN P+ D
Sbjct: 892 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTP 951
Query: 424 -------------YVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
Y+HRIGRTGR G+ G A L ++ + ++NVL
Sbjct: 952 MVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSED---SMNMINVL 997
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 111 bits (278), Expect = 2e-24
Identities = 109/395 (27%), Positives = 180/395 (44%), Gaps = 58/395 (14%)
Query: 124 PYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSV-KVLVISPTRELASQIYDN 182
P L +DV A TGSGKT + +P + + G K S + + +++ P + L +QI D
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAV---GSKPSKILQAVILVPVQTLVAQIVDE 310
Query: 183 LIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ----VVVATPGRLLDLIEEG---SVDLS 235
D G+ G D ++E + + V+VATP RL+ + +DLS
Sbjct: 311 FKRWNDESGVAKVVSLSGA-NDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLS 369
Query: 236 HVNYLVLDEADRMLEKGFEE----------------DIKKIIRQTRSTSRQTLMFTATWP 279
+ +L++DEADRM + EE +K IIRQ R+ Q ++ +AT
Sbjct: 370 KLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAP--QKIVLSATLS 427
Query: 280 KEVREL------------ASSFMSEPVKVSIGNRDELSAN----KRITQIVEVVDPFRXX 323
K+V EL A++ + + I D +S I+ + V DP
Sbjct: 428 KDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDP---- 483
Query: 324 XXXXXXXXXYHSGPTKN--DKVLIFALYKKEASRVERNLKY---NGYDVAAIHGDLSQQQ 378
+ T+N ++ LIF ++R+ LK + ++V L ++
Sbjct: 484 ---KFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKR 540
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYG 438
R + L +F + +L+ +DV ARG D+ V VIN P + +VHR GRTGRAGQ G
Sbjct: 541 RYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDG 600
Query: 439 TAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKF 473
++ ++ K L ++ V N G V E+++++
Sbjct: 601 YVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEY 635
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 110 bits (275), Expect = 5e-24
Identities = 86/311 (27%), Positives = 146/311 (46%), Gaps = 16/311 (5%)
Query: 96 FSQVSFIDQIQKEISK--FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153
FS + ++Q+ I K F KPT +Q+ + P L GKD++ A TGSGKT A+ +P +
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 154 IVTS---GDKSSSVKVLVISPTRELASQIYDNLIVLTDACG--LRSCCVYGGVPKDQQRE 208
++ + + L++ PTRELA Q+Y+ L LT C +R V QR
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 209 DLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRST 267
L +V+ATP R + + G + L + +LV+DEAD ML G+ ED+K + R +
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSR-SLPR 194
Query: 268 SRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXX 327
Q+ + +AT K + L P +++ +D+ ++ K +V+ + +
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFILAV--KDKEASGKLTQYVVKCSEQDKFLLAYI 252
Query: 328 XXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFK 387
G K+LIF R++ L+ G ++ +L R L ++
Sbjct: 253 LLKLRLIKG-----KILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYN 307
Query: 388 AGKCNLLLATD 398
G +++ATD
Sbjct: 308 KGLYQIIIATD 318
Score = 50.8 bits (120), Expect = 5e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTA 440
ARGLD NV V+N P + Y+HRIGRT RAG+ GTA
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTA 426
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 110 bits (274), Expect = 6e-24
Identities = 100/340 (29%), Positives = 151/340 (44%), Gaps = 60/340 (17%)
Query: 107 KEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKV 166
KE+S F T IQ + LL G+D++ A+TGS + + ++ V
Sbjct: 385 KEMS-FMNMTEIQHKTIRSLLEGRDLLAAAKTGSVEL---------TVKLKFMPTNRPGV 434
Query: 167 LVISPTRELASQIYDNLIVL-TDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRLL 224
++SPTRELA QI+ GL + GG + + L ++VATPG LL
Sbjct: 435 FILSPTRELAMQIFGGANTHHMHTYGL----IMGGDNTSAEAQKLANGINIIVATPGHLL 490
Query: 225 DLIEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVR 283
D ++ + ++ YLV+DEADR+L+ GFEE++K+II+ T R T++ +AT ++V
Sbjct: 491 DYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIK-LLPTCRHTMLLSATQTRKVE 549
Query: 284 ELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKV 343
+LA + K +I NR K+
Sbjct: 550 DLARISLK---KGAIKNRKR--------------------------------------KI 568
Query: 344 LIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARG 403
++F L Y + AIHG Q + T +F +LL DVAARG
Sbjct: 569 MVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKADSGILLCMDVAARG 628
Query: 404 LDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTL 443
LDIP V ++ ++Y+HR+ RT R G G H L
Sbjct: 629 LDIPEVDWIVQHDPLDDPKEYIHRVSRTAR-GLNGRGHVL 667
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 108 bits (269), Expect = 2e-23
Identities = 70/219 (31%), Positives = 118/219 (52%), Gaps = 8/219 (3%)
Query: 109 ISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDK---SSSVK 165
+ K T +Q S P LL G+D + ++TGSGKT A+ +P + ++ K S
Sbjct: 248 VLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPY 307
Query: 166 VLVISPTRELASQIYDNL-IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRL 223
LV+ PTRELA Q +D + +L + + GG + ++ LR+ ++++TPGRL
Sbjct: 308 ALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRL 367
Query: 224 LDLIEE-GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS--TSRQTLMFTATWPK 280
+D I+ ++ S + +LV DEADR+L+ GFE+DI I+ + RQ ++ +AT +
Sbjct: 368 VDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTE 427
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP 319
V LA + +PV +S+ ++ N + + EV P
Sbjct: 428 GVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPP 466
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 108 bits (269), Expect = 2e-23
Identities = 70/219 (31%), Positives = 118/219 (52%), Gaps = 8/219 (3%)
Query: 109 ISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDK---SSSVK 165
+ K T +Q S P LL G+D + ++TGSGKT A+ +P + ++ K S
Sbjct: 248 VLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPY 307
Query: 166 VLVISPTRELASQIYDNL-IVLTDACGLRSCCVYGGVPKDQQREDLRRS-QVVVATPGRL 223
LV+ PTRELA Q +D + +L + + GG + ++ LR+ ++++TPGRL
Sbjct: 308 ALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRL 367
Query: 224 LDLIEE-GSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRS--TSRQTLMFTATWPK 280
+D I+ ++ S + +LV DEADR+L+ GFE+DI I+ + RQ ++ +AT +
Sbjct: 368 VDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTE 427
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDP 319
V LA + +PV +S+ ++ N + + EV P
Sbjct: 428 GVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPP 466
Score = 73.9 bits (180), Expect = 5e-13
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
+HG + Q++RT EF + +LL TDVAARGLD+P V ++ P + +Y+HRIG
Sbjct: 558 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 617
Query: 430 RTGRAGQYGTAHTLFTEQEKHLAGALVN 457
RT R G +G++ + E +L +
Sbjct: 618 RTARIGCHGSSLLILAPSEAEYVNSLAS 645
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 105 bits (261), Expect = 2e-22
Identities = 73/211 (34%), Positives = 114/211 (53%), Gaps = 12/211 (5%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGD--KSSSVKVLVI 169
FP TP+Q+ + P + KDV A TGSGKT AF +P + ++ + K S V ++I
Sbjct: 29 FPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIII 88
Query: 170 SPTRELASQIYDNLIVLTDACGLRSCCVYGG---VPKDQQREDLRRSQVVVATPGRLLDL 226
+PTRELA QI + L T S ++ G +D +R + ++VATPGRL D+
Sbjct: 89 TPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDM 148
Query: 227 IEEGSVDLS------HVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPK 280
+ L ++ LVLDEADR+L+ GFE I I+ + R+T +F+AT +
Sbjct: 149 FRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTIL-EFLPKQRRTGLFSATQTQ 207
Query: 281 EVRELASSFMSEPVKVSIGNRDELSANKRIT 311
EV L + + PV+VS+ + +++ + T
Sbjct: 208 EVENLVRAGLRNPVRVSVKEKGVAASSAQKT 238
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 104 bits (259), Expect = 4e-22
Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 58/325 (17%)
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRE 174
PTPIQ + P +L + ++G+ TGSGKT + +PAI + S K LVI PT+E
Sbjct: 30 PTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQRAI------SGEKTLVIVPTKE 83
Query: 175 LASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDL 234
L Q R L+R + +L+++ G ++
Sbjct: 84 LVIQA---------------------------RRVLKRLARGIEEAWKLIEICTPGKIEG 116
Query: 235 SHVNYLVLDEADRMLEKGFEEDIKKII-RQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
+ LV+DE DR+LE E +K + R S S Q + F+AT P P
Sbjct: 117 MSADMLVVDEIDRILE---EPSLKSVFDRINESLSCQKVFFSATLP-----------DHP 162
Query: 294 VKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEA 353
+ + + + T+I E V F K K ++FA K
Sbjct: 163 LNMKVVEIE--------TRINETVKHFFFYIPSESKEAALLRILDKTRKTIVFAATKYAV 214
Query: 354 SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ L N ++ I+ + + R +F K ++L+ TDVAARGLDIP + TV+
Sbjct: 215 ELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVAARGLDIPYLDTVV 274
Query: 414 NLTFPLTVEDYVHRIGRT-GRAGQY 437
N ++HR+GR G QY
Sbjct: 275 NYDL-CDERTFLHRVGRVRGMGVQY 298
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 104 bits (259), Expect = 4e-22
Identities = 99/413 (23%), Positives = 166/413 (39%), Gaps = 67/413 (16%)
Query: 117 PIQAVSWPYLLAG----KDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPT 172
P+Q W + +D+ + TGSGKT ++ +P + + + + ++ LV+ PT
Sbjct: 8 PVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRC--LRALVVLPT 65
Query: 173 RELASQIYDNLIVLTDACGLRSCCVYGG------------VPK---------DQQREDLR 211
R+LA Q+ D + A GL G PK D ++L
Sbjct: 66 RDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLE 125
Query: 212 RS-QVVVATPGRLLDLIEEGS-VDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSR 269
+ ++VATPGRL+D I L H+ YLV+DE DR+L + ++ + +++ T+ TS
Sbjct: 126 SAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQ-TSD 184
Query: 270 QTLM--FTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXX 327
+L FT P L + + V+ + K + DP +
Sbjct: 185 DSLFPSFTPFVPSAFGSL-QTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDL 243
Query: 328 XXXXXYHSGPTK-------------------------------NDKVLIFALYKKEASRV 356
+G ++ +K +IF + R+
Sbjct: 244 HHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRL 303
Query: 357 ERNLKYNG---YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
+ L + G G L+Q R++ L F+ G +L+A+D RG+D+ V VI
Sbjct: 304 CKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVI 363
Query: 414 NLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPV 466
N P + ++HR GRT RAGQ G TL + E L+ + P+
Sbjct: 364 NYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPI 416
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 103 bits (258), Expect = 5e-22
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 58/246 (23%)
Query: 206 QREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTR 265
Q+ + +++ TPGR+ D++ + ++ VLDEAD ML F++ I I +
Sbjct: 53 QKLQMEAPHIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLN 112
Query: 266 STSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXX 325
S + Q ++ +AT P +V E+ FM +P+++
Sbjct: 113 SNT-QVVLLSATIPSDVLEVTKKFMRDPIRI----------------------------- 142
Query: 326 XXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNE 385
L KKE L + V+A+HGD+ Q++R + E
Sbjct: 143 ----------------------LVKKE------ELTLKDFTVSAMHGDMDQKERDVVMRE 174
Query: 386 FKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFT 445
+++G +L+ TD+ RG+D+ + VIN P E+Y+HRIGR G+ G G A +
Sbjct: 175 YRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMVA 234
Query: 446 EQEKHL 451
E ++ L
Sbjct: 235 EDKRTL 240
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 102 bits (254), Expect = 1e-21
Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 22/219 (10%)
Query: 103 DQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSG---D 159
DQ+ KE F PT +QA + P +L+G+DV+ A TG+GKT A+ P I+++ D
Sbjct: 42 DQL-KERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVD 100
Query: 160 KSSSVKVLVISPTRELASQIYDNLIVLTDAC-GLRSCCVYGGVPKDQQREDLRRS-QVVV 217
+S LVI PTREL Q+Y+ L L + V GG K +++ LR+ +++
Sbjct: 101 RSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILI 160
Query: 218 ATPGRLLD-LIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIR-------------- 262
ATPGRLLD L S ++ +++ DEAD +LE G+ ++I++II+
Sbjct: 161 ATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDD 220
Query: 263 -QTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGN 300
+ +Q L+ +AT +V +LA + +PV + + N
Sbjct: 221 IVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDN 259
Score = 72.0 bits (175), Expect = 2e-12
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 370 IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 429
+HG + Q+ R A FK K +LL+TDVAARGLD P V+ +I P +YVHR+G
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 430 RTGRAGQYGTA 440
RT R G+ G A
Sbjct: 439 RTARIGEKGEA 449
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 101 bits (251), Expect = 3e-21
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 12/196 (6%)
Query: 111 KFPKPTPIQAVSWPYLL--AGKDVIGI-AETGSGKTFAFGVPAINNIV---TSGDKSSSV 164
+ KPT IQ + P ++ AGK+ I A+TGSGKT ++ +P I+ I+ T D++S
Sbjct: 163 RIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGA 222
Query: 165 KVLVISPTRELASQIYDNLIVLTDACG-LRSCCVYGGVPKDQQREDLRRS-QVVVATPGR 222
LVI+PTRELASQIY L C L C + GG K ++ LR+ ++ TPGR
Sbjct: 223 FALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGR 282
Query: 223 LLDLIEEGSV---DLSH-VNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATW 278
+LD ++ V LS + Y+VLDE D+++E GF+E I +II+ + F
Sbjct: 283 VLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLP 342
Query: 279 PKEVRELASSFMSEPV 294
K V L S+ +++ V
Sbjct: 343 HKLVHMLCSATLTDGV 358
Score = 77.8 bits (190), Expect = 4e-14
Identities = 43/90 (47%), Positives = 58/90 (63%), Gaps = 8/90 (8%)
Query: 370 IHGDLSQQQRTQAL------NEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423
+HG LSQQ RT L NE GK ++ TDVA+RGLD+P+V +VI L P VED
Sbjct: 487 LHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVED 546
Query: 424 YVHRIGRTGRAGQYGTA--HTLFTEQEKHL 451
++HR+GRT RAG+ G + L E+EK++
Sbjct: 547 HLHRVGRTARAGEKGESLLFLLPGEEEKYM 576
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 93.6 bits (231), Expect = 6e-19
Identities = 102/445 (22%), Positives = 192/445 (42%), Gaps = 57/445 (12%)
Query: 63 AASASQSDIDEFLKENE-------VTVSDPSGSNIVPYLDFSQVSFIDQIQ-KEISKFPK 114
+A A S ID+F KEN + + D G++ + ++ ++ ++ F
Sbjct: 59 SAKAESSMIDKFCKENTRIQTNPGIDLPDDYGTDAIVANAIGDQRIVNNLKCVHVTTF-- 116
Query: 115 PTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSS------SVKVLV 168
+Q +S + G+ ++ A TG GKT+AF +PAI + + + S +L+
Sbjct: 117 -NAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILI 175
Query: 169 ISPTRELASQIYDNLIVLTDACGLRSCCVYGGVP-KDQQREDL--------RRSQVVVAT 219
++ T L Q+++ ++ GL+ C+ P +D + + L + + T
Sbjct: 176 MASTSALVDQLFNRCELIL---GLQ--CMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCT 230
Query: 220 PGRLLDLIEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTL---MFT 275
G+L IE G V L ++ ++LDEAD+M++ F DI I+ Q + + + L F+
Sbjct: 231 IGKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCFFS 290
Query: 276 ATWPKE--------VRELASSFMSEPVKVSIGNRDELSANKRITQI-------------V 314
AT+ K V ++ +P V I R +R+ ++ V
Sbjct: 291 ATYNKNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDIRSHPWV 350
Query: 315 EVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDL 374
+ R N+ + IF + ++V L+ GY+ + +
Sbjct: 351 IKMGIIRKLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQVTMALRQLGYNFKPVCSMI 410
Query: 375 SQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA 434
++ Q+ +N+ + K + ++ T++ ARG+D+ +VK I + + Y HRIGR GR
Sbjct: 411 TKNQQLVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGRD 470
Query: 435 GQYGTAHTLFTEQEKHLAGALVNVL 459
G G T+ E + G NV+
Sbjct: 471 G-CGGKSTVLVEHHQLQGGPASNVI 494
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 90.5 bits (223), Expect = 5e-18
Identities = 98/430 (22%), Positives = 174/430 (39%), Gaps = 79/430 (18%)
Query: 106 QKEISKFPKPTPIQAVSWPYLLAGKDVIG--------IAETGSGKTFAFGVPAINNIVTS 157
+K+ S+ P+PIQ V+ + K+++ AETGSGKT A+ +P I+ +
Sbjct: 128 RKKTSENIIPSPIQTVAIKRI--SKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQ 185
Query: 158 G----------DKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR 207
K+ ++ +++ PT EL Q+Y+ + GL S
Sbjct: 186 ELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFKWDKATSYRDLL 245
Query: 208 EDLR-RSQVVVATPGRLLDLIEEGSVD-----LSHVNYLVLDEADRMLEKGFEEDIKKII 261
E+++ R ++V TPG+LL+L + LS V ++VLDEAD +L++ + E+ I
Sbjct: 246 ENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAI 305
Query: 262 RQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFR 321
++ + + + +AT P+E + V + +L I + PF+
Sbjct: 306 KRIPNIN-HLIFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFK 364
Query: 322 XXXXXXXXXXXY-----HSGPTKNDKVLIFALYKKEASRVERNL-KYNGYDVAAIHGDLS 375
Y + P + +IF KK + L K G++ + G+ +
Sbjct: 365 GSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDT 424
Query: 376 QQQRTQ------------------------ALNEFKAGKCNL------------------ 393
++R++ +L +F+ N+
Sbjct: 425 FEERSEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNK 484
Query: 394 ----LLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
L+ TD+ ARGL+ V+ V+ P T D +HR+GRT R Q G L + K
Sbjct: 485 SLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGGRVFMLTDSKTK 544
Query: 450 HLAGALVNVL 459
A AL ++
Sbjct: 545 SWAKALPKII 554
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 89.0 bits (219), Expect = 2e-17
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 12/187 (6%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P+ +Q P + G DV+ A++G GKT F + + I + V VLV+
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV---NGQVTVLVMCH 120
Query: 172 TRELASQI---YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRS--QVVVATPGRLLDL 226
TRELA QI Y+ + ++ +GG+ + E L+++ VVV TPGR+L L
Sbjct: 121 TRELAFQISKEYERFSKYMPS--VKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 227 IEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTLMFTATWPKEVREL 285
+ S L +V + VLDE D+MLE+ D+++I R T +Q +MF+AT K++R +
Sbjct: 179 VRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLT-PHEKQCMMFSATLSKDIRPV 237
Query: 286 ASSFMSE 292
FM +
Sbjct: 238 CRKFMQD 244
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 83.6 bits (205), Expect = 6e-16
Identities = 91/380 (23%), Positives = 166/380 (42%), Gaps = 53/380 (13%)
Query: 118 IQAVSWPYLLAGKDVIGI---AETGSGKTFAFGVPAIN------NIVTSGDKSSSVKVLV 168
+ AV + A +D G+ A TG GKT+AF +PAI ++T+ + S +L+
Sbjct: 115 LNAVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILI 174
Query: 169 ISPTRELASQIYDN------LIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGR 222
++ T L Q+++ LI + D +R + V Q +D + + T G+
Sbjct: 175 LANTNSLVEQLFNRCEVLLGLIDMEDIIPIRDIKIEKLVASYQFTKD--QCDIAFCTMGK 232
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKG-FEEDIKKIIRQTRS--------------- 266
L IE+ ++ L ++ ++LDE+D+M++ F DI ++ Q +
Sbjct: 233 LKASIEDKTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSASH 292
Query: 267 ----------TSRQTLMFTAT-WPKEVRELASSFMSEPVKVSIGNR--DELSANKRITQI 313
TSRQ+ M W ++++ V + IG + +++ +N I ++
Sbjct: 293 NRNEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRV-IRIGGQRVNDIHSNPWIVKM 351
Query: 314 VEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGD 373
+ + GP K+ + IF +V L+ GY+ +
Sbjct: 352 NIIC---KLLDDDLKEMGSTKEGPWKHT-IAIFCETVSRVIQVTMALRQMGYNFKPVCSS 407
Query: 374 LSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 433
+ +QQ+ LN+ + + ++ T++ +RG+D+ +VK I + Y+HRIGR GR
Sbjct: 408 VLKQQQAITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMHRIGRVGR 467
Query: 434 AGQYGTAHTLFTEQEKHLAG 453
G G A L E HL G
Sbjct: 468 DGCGGRATVLI--DEHHLFG 485
>At2g28600 [A] KOG0339 ATP-dependent RNA helicase
Length = 502
Score = 82.8 bits (203), Expect = 1e-15
Identities = 78/309 (25%), Positives = 133/309 (42%), Gaps = 22/309 (7%)
Query: 166 VLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLR--RSQVVVATPGRL 223
+L + P++ ASQ+ L G+ + ++ G P D Q L+ + +VATP RL
Sbjct: 199 LLYLVPSQSKASQVRSVCKALK-GIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERL 257
Query: 224 LDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVR 283
L+++ VD+S+V+ LV+DE + G+ +K I+Q S+ QT++F ++ +
Sbjct: 258 LEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKS-IKQAISSKHQTIVFNNSFSASII 316
Query: 284 ELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKV 343
SF+ V N S ITQ V V + +
Sbjct: 317 PAVQSFLGGSVNRVTVNESVASQGSCITQTVSVC------ASEEKKLQKFAKHLDSSSSK 370
Query: 344 LIFALYKKEA-SRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
LI+ + K+E+ ++ LK G V+ L+E K + + D
Sbjct: 371 LIYIVTKEESFKKIMAILKLKGISVST--------SSDSKLSEVKKSRKPVAHLIDFEQL 422
Query: 403 GLDI-PNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE--KHLAGALVNVL 459
+ + +TV+ F ++E Y + R +G H+ TE++ + AG LVNVL
Sbjct: 423 DTTVMRDSETVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNVL 482
Query: 460 NGAGQPVPE 468
GQ VP+
Sbjct: 483 ENCGQNVPD 491
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 80.9 bits (198), Expect = 4e-15
Identities = 76/320 (23%), Positives = 136/320 (41%), Gaps = 33/320 (10%)
Query: 139 GSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYD--NLIVLTDACGLRSCC 196
GSGKT + + + I + SSV+ +++ PTREL Q+ ++ ++ C
Sbjct: 81 GSGKTLTYLLLIFSLI---NPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCT 137
Query: 197 VY-----GGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEK 251
V G + + + ++VAT L ++E+ + V LV+DE D +
Sbjct: 138 VMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS 197
Query: 252 GFEE-DIKKIIRQTRSTS-RQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKR 309
+ ++K++ S RQT+ +A+ P+ F+ + ++ RD + +
Sbjct: 198 SKQVGSVRKLLTSFSSCDKRQTVFASASIPQH-----KHFVHDCIQQKWTKRDVVHVHVS 252
Query: 310 ITQIVEVVDPFRXXXXXXXXXXXYHSGPTKND---KVLIFALYKKEASRVERN------- 359
+ + R ++D +IF + E S+ N
Sbjct: 253 AIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLL 312
Query: 360 -----LKYNG-YDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVI 413
Y G ++ + GD++ R +L E + G LL++TD+AARG+D+P +
Sbjct: 313 MEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIF 372
Query: 414 NLTFPLTVEDYVHRIGRTGR 433
N P TV DY+HR GR GR
Sbjct: 373 NFDLPQTVTDYLHRAGRAGR 392
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 80.5 bits (197), Expect = 5e-15
Identities = 78/337 (23%), Positives = 152/337 (44%), Gaps = 56/337 (16%)
Query: 118 IQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSS------SVKVLVISP 171
+Q +S + G+ ++ A TG GKT+AF +PAI + + + S +L+++
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGGVP-KDQQREDL--------RRSQVVVATPGR 222
T L Q+++ ++ GL+ C+ P +D + + L + + T G+
Sbjct: 79 TSALVDQLFNRCELIL---GLQ--CMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGK 133
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEK-GFEEDIKKIIRQTRSTSRQTL---MFTATW 278
L IE G V L ++ ++LDEAD+M++ F DI I+ Q + + + L F+AT+
Sbjct: 134 LKATIECGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATY 193
Query: 279 PKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPT 338
K + + + +++ DP + GP
Sbjct: 194 NKNANGTIALTVLQ------------------MRMLGEDDPCK-------------DGP- 221
Query: 339 KNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATD 398
N+ + IF + ++V L+ GY+ + +++ Q+ +N+ + K + ++ T+
Sbjct: 222 YNETIAIFCETVQRVTQVTMTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTN 281
Query: 399 VAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
+ ARG+D+ +VK I + + Y HRIGR +G
Sbjct: 282 ILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVSISG 318
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 80.1 bits (196), Expect = 7e-15
Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 261 IRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSI---GNRDELSANKRITQIVEVV 317
+R+ + S+Q + AT P ++ A + + ++ GN ++ + + VEV
Sbjct: 345 VRKIYTRSKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVT 404
Query: 318 DPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQ 377
+ ++ T ++ ++FA + V L+ H +
Sbjct: 405 VDSQVDALIEAVK---NNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLD 461
Query: 378 QRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQY 437
+R L +F+ + + TD AARG+D+PNV VI F + D++HRIGRT RAGQY
Sbjct: 462 ERANILADFRETG-GVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQY 520
Query: 438 GTAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL-KKFGTHTKKKEHSAYGAFFKDVDLSK 496
GT +L+TE + L A+ + GQPV +K G K K+ + F + ++
Sbjct: 521 GTVTSLYTEANRDLVEAIREAVK-MGQPVETAFSRKRGFRNKVKKRA-----FLKAEEAE 574
Query: 497 KPKKITF 503
+P+ + +
Sbjct: 575 EPQAVRY 581
Score = 67.8 bits (164), Expect = 4e-11
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 49/255 (19%)
Query: 64 ASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEI--SKFPKPTPIQAV 121
ASA+++++++ K N+ +D + S + + D + + S F +P+ QAV
Sbjct: 59 ASATEAEVEK--KGNDTFFADHTVS-------WKSLGLSDNVSIALRDSGFDRPSLTQAV 109
Query: 122 SWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVK-----------VLVIS 170
P +L+GKDVI AETGSGKT + P I+ + + S L++
Sbjct: 110 CIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILC 169
Query: 171 PTRELASQIYDNLIVLTDACG-----LRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLD 225
P L Q+ + L D G + + C G P R ++V+TP LL+
Sbjct: 170 PNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPD-------RLPDIIVSTPAALLN 222
Query: 226 LIE----EGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKE 281
IE L V Y+V DEAD +L F+ I ++I R K+
Sbjct: 223 NIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE-----------KQ 271
Query: 282 VRELASSFMSEPVKV 296
V LA S + P+++
Sbjct: 272 VSRLAKSNLGRPMEI 286
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 79.3 bits (194), Expect = 1e-14
Identities = 90/392 (22%), Positives = 161/392 (40%), Gaps = 48/392 (12%)
Query: 112 FPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISP 171
F P Q V PY L +VI A TGSGKT ++ +P + + S+ ++ P
Sbjct: 45 FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMA-----RGRSLFGAILVP 99
Query: 172 TRELASQIYDNLIVLTDACGLRSCCVYGG---------------VPK---DQQREDLRRS 213
+ L Q+Y + + GL+ VYG V K D+ RE + S
Sbjct: 100 GKPLVRQVYRVVREIKHE-GLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAES 158
Query: 214 -----QVVVATPGRLLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTS 268
+V++ TP +L L+ ++ +V +LV+DEAD ++ I+
Sbjct: 159 LRASARVLIGTPRSVLGLMSMS--EIRNVTHLVIDEADLLINPETVGVFASILSVIEMED 216
Query: 269 RQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXX 328
F+AT + V E+ + S K+ + ++ ++++ F
Sbjct: 217 IHISCFSATMNEYVSEVIETVKSI-TKIRVVSK----------RLIDHEFVFGTSRKIKH 265
Query: 329 XXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKA 388
LIF +K + L +A++ + Q+ + L+ F+
Sbjct: 266 LSLLQIIADGIESPTLIFVKDEKTGEALSMLL-----GKSAVYRE-DQEGSGEVLDGFRL 319
Query: 389 GKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448
K L TD +RG+D N+++VIN P T +VHRIGR R Q +T+++ ++
Sbjct: 320 KKIWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINRNCQGQKIYTIYSSED 379
Query: 449 KHLAGALVNVLNGAGQPVPEELKKFGTHTKKK 480
G + L G VP+ + + ++++
Sbjct: 380 FGRIGVVAEFLEENGHEVPKHITRIIEKSRRR 411
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 72.0 bits (175), Expect = 2e-12
Identities = 75/316 (23%), Positives = 145/316 (45%), Gaps = 31/316 (9%)
Query: 72 DEFLKENEVTVSDPSG---SNIVPYLD-FSQVSFIDQIQKEISKF--PKPTPIQAVSWPY 125
D L++N +P G SN +D F ++ ++ + I + KP+ IQ +
Sbjct: 51 DSGLRDNGPDGMEPKGVIESNWNEIVDSFDDMNLLESLLHGIYAYGSEKPSAIQQRAILP 110
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIV 185
+ G VI A++G+GK F + ++ I L + T+ L ++ L
Sbjct: 111 CIRGYVVIVQAQSGTGKMATFSISILHQIE-----------LDVKATQALIQKVVIALGD 159
Query: 186 LTDACGLRSC--CVYG-GVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVDLSHVNYLVL 242
DA SC C+ G V + Q+ + ++V TPG + D++ + ++ VL
Sbjct: 160 HMDA----SCHTCIGGTNVHAEVQKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIKMFVL 215
Query: 243 DEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRD 302
D+ D ML GF++ I I ++ S + Q ++ +AT P +V E+ FM E + + + ++
Sbjct: 216 DKTDEMLSHGFKDQIYGIFQELNSNT-QVVLPSATMPSDVLEVTKKFMREHIWILV-KKE 273
Query: 303 ELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKY 362
EL+ + I Q ++ R Y + + +IF +++A + + +
Sbjct: 274 ELTL-EGICQF--YINMEREEWKLDTLGDLYET--LTIAQAVIFLNTRRKADWLTKKMHA 328
Query: 363 NGYDVAAIHGDLSQQQ 378
+ V+A+HGD+ Q++
Sbjct: 329 QDFTVSAMHGDMDQKE 344
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 71.6 bits (174), Expect = 3e-12
Identities = 98/403 (24%), Positives = 168/403 (41%), Gaps = 43/403 (10%)
Query: 64 ASASQSDIDEFLKENEVTVSD-PSGSNIVPYLDFSQVSFIDQIQ---KEISKFPKPTPIQ 119
+S SQ D ++ +++ ++SD S SN+ + + D++ E+ K P P Q
Sbjct: 625 SSVSQKDEEDDF-DDDFSLSDIVSKSNLSSKTNGPTYPWSDEVLYRLHEVFKLPGFRPNQ 683
Query: 120 AVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQI 179
+ L GKDV + TG GK+ + +PA+ V SG + +VISP L
Sbjct: 684 LEAVNATLQGKDVFVLMPTGGGKSLCYQLPAV---VKSGKTHGTT--IVISPLISLMQDQ 738
Query: 180 YDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVV--VATPGRLLDLIEEGSVDLSHV 237
++L+ + S G + +Q +L + ++ V ++ E+ +S +
Sbjct: 739 VEHLLNKNIKASMFSS--RGTAEQRRQTFNLFINGLLDLVYISPEMISASEQCKRAISRL 796
Query: 238 NY------LVLDEADRMLEKG--FEEDIKKIIRQTRS-TSRQTLMFTATWPKEVRE--LA 286
+V+DEA + G F D K++ R + TAT ++VR +
Sbjct: 797 YADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIH 856
Query: 287 SSFMSEPVKVSIG-NRDEL--SANKRITQ-IVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
+ + EPV + NR L NK+ I E+ D + KN
Sbjct: 857 NLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRF--------------KNQT 902
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
+I+ KK + ++ NG A H + +R ++A + ++ AT
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFT 445
G+D P+V+ V + T P T+E Y GR GR G Y T F+
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFS 1005
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 68.9 bits (167), Expect = 2e-11
Identities = 78/340 (22%), Positives = 145/340 (41%), Gaps = 43/340 (12%)
Query: 114 KPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTR 173
+P +Q ++ L G D + TG GK+ + +PAI +T G +VISP +
Sbjct: 739 RPNQLQVIN--ATLLGNDCFVLMPTGGGKSLCYQLPAI---LTEG------VTIVISPLK 787
Query: 174 ELASQIYD--NLIVLTDAC-----GLRSCCVYGGVPKDQQRED-----LRRSQVVVATPG 221
L I+D N + D C G + + +D + + L + +++
Sbjct: 788 SL---IFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 222 RLLDLIEEGSVDLSHVNYLVLDEADRMLEKG--FEEDIKKI-IRQTRSTSRQTLMFTATW 278
R D ++ + + ++++ V+DEA + + G F D KK+ + + R + T+ TAT
Sbjct: 845 RFQDTLDTLNSN-NYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATA 903
Query: 279 PKEVR-ELASSFMSEPVK--VSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHS 335
VR ++ + + K +S NR L + V +D Y
Sbjct: 904 TPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDI----------SRYIR 953
Query: 336 GPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLL 395
++ +I+ L +KE + + +G + H L+ R ++ GK ++
Sbjct: 954 SKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVIC 1013
Query: 396 ATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
AT G+D P+V+ V++ + P ++E Y GR GR G
Sbjct: 1014 ATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDG 1053
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 65.5 bits (158), Expect = 2e-10
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 60 ESFAASASQSDIDEFLKENEVTVSDPSGSNIVPYLDFSQVSFIDQIQKEISK--FPKPTP 117
E F+ S + D++ E+ V P FS +S + I++ I + +PTP
Sbjct: 332 ELFSGQLSGINFDKY---EEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTP 388
Query: 118 IQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIV-------------TSGDKSSSV 164
+Q S P L G+D++ A+TGSGKT AF VP +N I+ + G K
Sbjct: 389 VQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYP 448
Query: 165 KVLVISPTRELASQI 179
LV+SPTREL+ Q+
Sbjct: 449 SALVLSPTRELSLQV 463
>SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase
Length = 1328
Score = 65.1 bits (157), Expect = 2e-10
Identities = 89/367 (24%), Positives = 155/367 (41%), Gaps = 46/367 (12%)
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL 186
L+GKDV + TG GK+ + +PA V G S V LVISP L D+L L
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPA----VIEGGASRGV-TLVISPLLSLMQDQLDHLRKL 586
Query: 187 TDACGLRSCCVYGGVPKDQQRED---LRRSQVVVATPGRLLDLIEEGSVDLSHVNY---- 239
+ S + G P D++R+ L V+V +LL + EG +
Sbjct: 587 N----IPSLPLSGEQPADERRQVISFLMAKNVLV----KLLYVTPEGLASNGAITRVLKS 638
Query: 240 ---------LVLDEADRMLEKG--FEEDIKKI-IRQTRSTSRQTLMFTATWPKEVRELAS 287
+V+DEA + G F D K++ + + R + TAT E+
Sbjct: 639 LYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTAT----ANEIVK 694
Query: 288 SFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFA 347
+ +++ N EL ++ + + P + + S ++ +I+
Sbjct: 695 KDIINTLRME--NCLELKSSFNRPNLFYEIKPKKDLYTELYR---FISNGHLHESGIIYC 749
Query: 348 LYKKEASRVERNLKYNGYDVAA--IHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
L + +V L+ N Y + A H L + +R + NE+++G +++AT G+D
Sbjct: 750 LSRTSCEQVAAKLR-NDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVD 808
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQP 465
+V+ VI+ +FP ++E Y GR GR G+ AH + K +++G G
Sbjct: 809 KGDVRFVIHHSFPKSLEGYYQETGRAGRDGK--PAHCIMFYSYKDHVTFQKLIMSGDGDA 866
Query: 466 VPEELKK 472
+E ++
Sbjct: 867 ETKERQR 873
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 63.9 bits (154), Expect = 5e-10
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 342 KVLIFALYKKEASRVERN--LKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDV 399
+ +IF +K + + N +K N +HGD++Q QR L F+ +L+AT+V
Sbjct: 568 RAIIFCETRKNVTEMAMNPHIKQNAQ---CLHGDIAQSQREITLKGFREDSFKVLVATNV 624
Query: 400 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
AA L IP V VI + P VE +HR G TGRAGQ G + +F QEK
Sbjct: 625 AAHSLHIPEVDLVIQHSPPQDVEARIHRSGCTGRAGQ-GFVY-VFINQEK 672
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 62.8 bits (151), Expect = 1e-09
Identities = 40/101 (39%), Positives = 66/101 (64%), Gaps = 6/101 (5%)
Query: 215 VVVATPGRLLDLIEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLM 273
++VAT GRLLD ++ + ++ LV+DEADR+L+ GFEE++K+II+ T RQT++
Sbjct: 19 IIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK-LLLTHRQTML 77
Query: 274 FTATWPKEVRELAS-SFMSEPVKVSIGNRDELSANKRITQI 313
F+AT ++V +LA S EP+ V D+ +AN+ + +
Sbjct: 78 FSATQTQKVEDLARISLKKEPLYV---GDDDDNANETVADL 115
>At1g10930 [L] KOG0351 ATP-dependent DNA helicase
Length = 665
Score = 60.8 bits (146), Expect = 4e-09
Identities = 78/334 (23%), Positives = 141/334 (41%), Gaps = 54/334 (16%)
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL 186
++G DV + TG GK+ + +PA+ + G LVISP L S I D ++ L
Sbjct: 137 MSGSDVFVLMPTGGGKSLTYQLPAL---ICGGI------TLVISP---LVSLIQDQIMNL 184
Query: 187 TDACGLRSCCVYGGVPKDQQ-------REDLRRSQVVVATPGRLLDLIEEGSVDLSHVNY 239
A + + + G+ +Q + + +++ TP + + + L H+
Sbjct: 185 LQA-NIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEK----VAKSDSLLRHLEN 239
Query: 240 L---------VLDEADRMLEKG--FEEDIKKI-IRQTRSTSRQTLMFTATWPKEVRE--- 284
L V+DEA + + G F D + + I + + + L TAT V+E
Sbjct: 240 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 299
Query: 285 LASSFMSEPVKVSIGNRDEL--SANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDK 342
A ++ V NR L S + + +E +D F ++
Sbjct: 300 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHF-------------DEC 346
Query: 343 VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAAR 402
+I+ L + + +V L+ G+ A HG + +QR ++ + N++ AT
Sbjct: 347 GIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGM 406
Query: 403 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ 436
G++ P+V+ VI+ + P ++E Y GR GR GQ
Sbjct: 407 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 440
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 59.7 bits (143), Expect = 1e-08
Identities = 85/391 (21%), Positives = 168/391 (42%), Gaps = 59/391 (15%)
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIV 185
+L G + + TG+GK+ + +PA+ + G LV+SP L S + D L
Sbjct: 281 ILGGSSTMLVLPTGAGKSLCYQIPAM---ILPGI------TLVVSP---LVSLMIDQLKH 328
Query: 186 LTDACGLRSCCVYGGVPKDQQR-----EDLRRSQ-----VVVATPGRLLDLIEEGSVDLS 235
L + GG+ QR E LR+ + V+ +P RLL++ +S
Sbjct: 329 LPSI-------IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVEFLSMFRMS 381
Query: 236 -HVNYLVLDEADRMLEKGFEEDI-------KKIIRQTRSTS------RQTLMFTATWPKE 281
V+ +V+DEA + E + + + I+ ++ + + +++F+ +
Sbjct: 382 LSVSLVVVDEAHCVSECIYCLSLFCLSWLLRAILNRSHNFRPSYMRLKASMLFSELKAEC 441
Query: 282 VRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXX------YHS 335
+ + ++ + ++ + + + S N + Q ++ D F S
Sbjct: 442 ILAMTATATTMTLQAVMSSLEIPSTN--LIQKSQLRDNFELSVSLSGANRMKDLLILMES 499
Query: 336 GPTKNDK-VLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLL 394
P K + ++++ ++ E + + L+ N + H L + R + F + K ++
Sbjct: 500 PPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVV 559
Query: 395 LATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGA 454
+AT GLD +V VI+ + P ++E+YV IGR GR G+ H LF + + +L
Sbjct: 560 VATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCH-LFYDNDTYLKLR 618
Query: 455 LVNVLNGAGQPVPEELKKFGTH---TKKKEH 482
+ +G + + KF TH T+ K+H
Sbjct: 619 SLAHSDGVDE---YAVGKFLTHVFSTETKQH 646
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 58.2 bits (139), Expect = 3e-08
Identities = 85/371 (22%), Positives = 146/371 (38%), Gaps = 33/371 (8%)
Query: 110 SKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPA-INNIVTSGDKSSSVKVLV 168
+KF Q+V + LL ++I + TG GK+ +F +PA I + K ++ LV
Sbjct: 1188 AKFRSLKQFQSVYFS-LLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLV 1246
Query: 169 ISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKD------QQREDLRRSQVVVATPGR 222
+ P L ++++ + GL C KD Q DL A
Sbjct: 1247 LVPMMSLRQ----DMMLRVNEKGLLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNS 1302
Query: 223 LLDLIEEGSVDLSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEV 282
L E + L + +V+DEA +L G + + +AT+P+++
Sbjct: 1303 GLRFFESLAT-LGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQL 1361
Query: 283 RELASSFMSEPVKVSIGNRDELSANKRITQIVEVVD--PFRXXXXXXXXXXXYHSGPTKN 340
+A V R+ +A + I + D F G +
Sbjct: 1362 EMVARQTFCTNFYVL---RETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEG---D 1415
Query: 341 DKVLIFALYKKEASRVERNLKYNGY----DVAAIHGDLSQQQRTQALNEFKA--GKCNLL 394
+ +IF KK+ + R L + V GD+S ++R + F+ GK ++
Sbjct: 1416 GRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIM 1475
Query: 395 LATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQ-----EK 449
+AT G++ V+ V++ P + DYV GR GR G+Y A LF E+
Sbjct: 1476 IATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIA-ALFYEKYDSTWSS 1534
Query: 450 HLAGALVNVLN 460
++ ++ N LN
Sbjct: 1535 YVEDSMKNFLN 1545
>Hs14591902 [R] KOG0353 ATP-dependent DNA helicase
Length = 649
Score = 57.4 bits (137), Expect = 5e-08
Identities = 75/355 (21%), Positives = 145/355 (40%), Gaps = 35/355 (9%)
Query: 95 DFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNI 154
DF + I + + K K P+Q + +AGK+V + TG GK+ + +PA+
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL--- 128
Query: 155 VTSGDKSSSVKVLVISPTRELASQIYDNLIVLTDACGLRSCCVYGGVPKDQQR----EDL 210
S LVI P L S + D L+VL G+ + + K+ + E +
Sbjct: 129 ------CSDGFTLVICP---LISLMEDQLMVLKQL-GISATMLNASSSKEHVKWVHAEMV 178
Query: 211 RRS---QVVVATPGRL------LDLIEEGSVDLSHVNYLVLDEADRMLEKG--FEEDIKK 259
++ +++ TP ++ + +E+ + + + +DE + G F D K
Sbjct: 179 NKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 237
Query: 260 I-IRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELSANKRITQIVEVVD 318
+ I + + + + TAT V A + + ++ R EV
Sbjct: 238 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTF-----TASFNRPNLYYEVRQ 292
Query: 319 PFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQ 378
+G K +I+ +K++ +V +L+ G A H +L +
Sbjct: 293 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPED 352
Query: 379 RTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 433
+T ++ A + +++AT G+D P+V+ VI+ + ++E+Y GR GR
Sbjct: 353 KTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 407
>Hs4759030 [L] KOG0351 ATP-dependent DNA helicase
Length = 1208
Score = 56.6 bits (135), Expect = 8e-08
Identities = 72/351 (20%), Positives = 138/351 (38%), Gaps = 42/351 (11%)
Query: 126 LLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIV 185
+L+G + + TG+GK+ + +PA+ + S LV+SP L D+ +
Sbjct: 492 ILSGISTLLVLPTGAGKSLCYQLPALLY-----SRRSPCLTLVVSPLLSLM----DDQVS 542
Query: 186 LTDACGLRSCCVYGGVPKDQQREDLRRSQ-----VVVATPGRLLDLIE-EGSVDLSHVNY 239
C L++ C++ G+ + Q+ L++ + V++ TP L+ + L V +
Sbjct: 543 GLPPC-LKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQLPPVAF 601
Query: 240 LVLDEADRMLEKGFEED-----IKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPV 294
+DEA + + + K++R+ R L TAT R AS
Sbjct: 602 ACIDEAHCLSQWSHNFRPCYLRVCKVLRE-RMGVHCFLGLTAT---ATRRTASDVAQH-- 655
Query: 295 KVSIGNRDELSANKRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLIFALYKKEAS 354
+++ +L + + + D ++I+ +++
Sbjct: 656 -LAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTE 714
Query: 355 RVERNLKYNGY--------------DVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVA 400
R+ L+ + A H + ++R + F G+ +++AT
Sbjct: 715 RIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAF 774
Query: 401 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHL 451
GLD P+V+ V++L P + E YV +GR GR GQ H Q + L
Sbjct: 775 GMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDL 825
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 56.6 bits (135), Expect = 8e-08
Identities = 30/81 (37%), Positives = 41/81 (50%)
Query: 376 QQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
Q +R + NEF + +L A+DVAARGLD P V + P Y+HR GRT R
Sbjct: 218 QMRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYK 277
Query: 436 QYGTAHTLFTEQEKHLAGALV 456
+ G A + EK + L+
Sbjct: 278 EDGEALLILLASEKAIVQQLL 298
Score = 50.4 bits (119), Expect = 6e-06
Identities = 33/91 (36%), Positives = 51/91 (55%), Gaps = 2/91 (2%)
Query: 197 VYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEG-SVDLSHVNYLVLDEADRMLEKGFEE 255
+ GG + E + ++V PGRLL ++E S + + LVLDEA R+L+ GF +
Sbjct: 116 IIGGKYLKHEAERINNINILVCAPGRLLQHMDETVSFHATALLMLVLDEAYRILDVGFAD 175
Query: 256 DIKKIIRQTRSTSRQTLMFTATWPKEVRELA 286
+ II + RQTL+F+AT V++LA
Sbjct: 176 TMNAII-ENLPKKRQTLLFSATQTISVKDLA 205
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 55.8 bits (133), Expect = 1e-07
Identities = 37/95 (38%), Positives = 61/95 (63%), Gaps = 6/95 (6%)
Query: 221 GRLLDLIEEGSVDL-SHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWP 279
GRLLD ++ + ++ LV+DEADR+L+ GFEE++K+II+ T RQT++F+AT
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK-LLLTHRQTMLFSATQT 90
Query: 280 KEVRELAS-SFMSEPVKVSIGNRDELSANKRITQI 313
++V +LA S EP+ V D+ +AN+ + +
Sbjct: 91 QKVEDLARISLKKEPLYV---GDDDDNANETVADL 122
>CE13130_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 873
Score = 55.8 bits (133), Expect = 1e-07
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 46/330 (13%)
Query: 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL 186
L G D + TG+GK+ + +PA+ + G +V+SP R L + L
Sbjct: 145 LMGHDTFVLMPTGAGKSLCYQLPAV---ILPG------VTVVVSPLRSLIEDQKMKMKEL 195
Query: 187 TDACGLRSCCVYGGVPKDQQREDLRRS----QVVVATPGRLLDLIEEGSV--DLSHVNYL 240
C + + G +++ +L +++ TP ++ SV DL L
Sbjct: 196 GIGCEALTADL-GAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLL 254
Query: 241 ---VLDEADRMLEKG--FEEDIKKIIRQTRSTSRQ-----TLMFTATWPKEVRELASSFM 290
V+DEA + + G F D K+ + L TAT PK V +
Sbjct: 255 ARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATAT-PKIVTDARDHLK 313
Query: 291 SEPVKVSIGN--RDELSAN---KRITQIVEVVDPFRXXXXXXXXXXXYHSGPTKNDKVLI 345
+ K+ I + RD L + K ++ VV+ + P K+ ++
Sbjct: 314 MQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLY------------PGKSG--IV 359
Query: 346 FALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLD 405
+ L +KE V+ L G H L+ R + A K +++ AT G+D
Sbjct: 360 YCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGID 419
Query: 406 IPNVKTVINLTFPLTVEDYVHRIGRTGRAG 435
P+V+ VI+ + P ++E Y GR GR G
Sbjct: 420 KPDVRFVIHYSLPKSIEGYYQETGRAGRDG 449
>ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase
Length = 766
Score = 55.5 bits (132), Expect = 2e-07
Identities = 83/354 (23%), Positives = 135/354 (37%), Gaps = 69/354 (19%)
Query: 127 LAGKDVIGIAETGSGKTFAFGVPA--------------------INNIVTSGDKSSSVKV 166
L+GKDV + TG GK+ + +PA I N++ G + +
Sbjct: 250 LSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLSLVQDQIRNLLQKGILALPINS 309
Query: 167 LVISPTRELASQIY--DNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQVVVATPGRLL 224
+ R+L Q+ D LI C ++ P+ ++A G
Sbjct: 310 NLSRAERDLVFQVLGGDELI----------CKIFYVTPE------------LIAKSGHFH 347
Query: 225 DLIEEGSVDLSHVNYLVLDEADRMLEKG--FEEDIKKI-IRQTRSTSRQTLMFTATWPKE 281
D++ G V + V+DEA + + G F D K++ + R S + TAT ++
Sbjct: 348 DVLS-GLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQK 406
Query: 282 VR----ELASSFMSEPVKVSIGNRDELSANKRI-TQIVEVVDPFRXXXXXXXXXXXYHSG 336
V E E K+S NR L R T VE+ +
Sbjct: 407 VEMDILENLGIRGCETFKMSF-NRSNLRYEVRAKTSTVEL------------DIASFVQT 453
Query: 337 PTKNDKVLIFALYKKEASRVERNL-KYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLL 395
+ +I+ KKE + L KY G A H LS+ +R ++ G+ +++
Sbjct: 454 HFPDCCGIIYCTSKKECEMISEKLGKYMG--TAFYHAGLSKNERNSVQEKWNRGEFKVIV 511
Query: 396 ATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
AT G+D +V+ VI+ P ++E Y GR GR G +T +K
Sbjct: 512 ATIAFGMGIDKKDVRFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDK 565
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,924,949
Number of Sequences: 60738
Number of extensions: 1062019
Number of successful extensions: 4167
Number of sequences better than 1.0e-05: 256
Number of HSP's better than 0.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 364
length of query: 504
length of database: 30,389,216
effective HSP length: 111
effective length of query: 393
effective length of database: 23,647,298
effective search space: 9293388114
effective search space used: 9293388114
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)