ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII3830  suspect: LH   U     KOG4056  Intracellular trafficking, secretion, and vesicular transport  Translocase of outer mitochondrial membrane complex, subunit TOM20

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII3830 1353557  1354108 184  
         (184 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR082w [U] KOG4056 Translocase of outer mitochondrial membrane ...   159   3e-39
SPAC6F12.07 [U] KOG4056 Translocase of outer mitochondrial membr...    71   1e-12

>YGR082w [U] KOG4056 Translocase of outer mitochondrial membrane complex
           subunit TOM20
          Length = 183

 Score =  159 bits (401), Expect = 3e-39
 Identities = 80/175 (45%), Positives = 105/175 (59%)

Query: 10  RILTIXXXXXXXXXXXXXXXFDYQRRNNPEFRKQLKRKLKQHXXXXXXXXXXXXXXXXXR 69
           R L I               FDYQRRN+P+FRK L+++ K+                  +
Sbjct: 9   RGLAITTAIAALSATGYAIYFDYQRRNSPQFRKVLRQRAKEQAKMEEQAKTHAKEVKLQK 68

Query: 70  VNEILIAELTKDPLPQDPSQREATFSSNVELGEKLAAIPGSELESALKFYKALSVYPNPS 129
           V E L  EL KDP+P DPS+REATF++NVE GE+L+   G ELE+A KFYKAL+VYP P+
Sbjct: 69  VTEFLSMELAKDPIPSDPSEREATFTTNVENGERLSMQQGKELEAASKFYKALTVYPQPA 128

Query: 130 DLLGIYQRSLTEEIYENIVLMIALMPPSNVSSFLXXXXXXXXXXXXXXXXXEIDE 184
           DLLGIYQRS+ E IYE I+LMIA++PP+NV+SF+                 +ID+
Sbjct: 129 DLLGIYQRSIPEAIYEYIILMIAILPPANVASFVKGVVGSKAESDAVAEANDIDD 183


>SPAC6F12.07 [U] KOG4056 Translocase of outer mitochondrial membrane complex
           subunit TOM20
          Length = 152

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 30  FDYQRRNNPEFRKQLKRKLKQHXXXXXXXXXXXXXXXXXRVNEILIAELTKDPLPQDPSQ 89
           FDY+RRN+P FRK LKR+ K+                   V E L   +   P+P    +
Sbjct: 22  FDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQV-VASTPVPSSAEE 80

Query: 90  REATFSSNVELGEKL-AAIPGSELESALKFYKALSVYPNPSDLLGIYQRSLTEEI 143
           +E  F   V  GE+L    P +  ESA  FY AL VYP P +L  IY+R++ E I
Sbjct: 81  KELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYERTVPEPI 135


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,389,224
Number of Sequences: 60738
Number of extensions: 233315
Number of successful extensions: 450
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 2
length of query: 184
length of database: 30,389,216
effective HSP length: 100
effective length of query: 84
effective length of database: 24,315,416
effective search space: 2042494944
effective search space used: 2042494944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)