ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3852 good O KOG0800 Posttranslational modification, protein turnover, chaperones FOG: Predicted E3 ubiquitin ligase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3852 1360289 1361200 304
(304 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR093c [O] KOG0800 FOG: Predicted E3 ubiquitin ligase 143 3e-34
Hs18590847 [O] KOG4628 Predicted E3 ubiquitin ligase 52 8e-07
At4g09560 [O] KOG4628 Predicted E3 ubiquitin ligase 52 8e-07
ECU07g0330 [O] KOG0800 FOG: Predicted E3 ubiquitin ligase 51 2e-06
At1g22670 [O] KOG4628 Predicted E3 ubiquitin ligase 49 7e-06
>YPR093c [O] KOG0800 FOG: Predicted E3 ubiquitin ligase
Length = 310
Score = 143 bits (361), Expect = 3e-34
Identities = 96/308 (31%), Positives = 148/308 (47%), Gaps = 40/308 (12%)
Query: 2 IEICGICLESMNETDQ-GELLPCEHRYHVSCIRKWHLYSNDFKCPTCRKESKSLR--RKH 58
+E C ICL E +Q G L C H++H++CIR+WH YS + KCP CR ES L
Sbjct: 23 MEECPICLADDQEGEQFGCLNVCGHKFHLNCIREWHKYSINLKCPICRVESTHLEVGEGQ 82
Query: 59 DDIEIDLKYWCNVSLIEQFAKLRLLNDDEQEAVAAIXXXXXXXXXXXXXXXDPNGNGDQD 118
+ I+LK + + N+ + D G DQ+
Sbjct: 83 HALSINLKMGFMIKNAIDYVGAETTNERNE---------------------DDTGEQDQE 121
Query: 119 TLQSEEIGHQPQNNNGMQGVELLQCALCGEID-DDITLYCESCETLFHSSCLNELLCEVG 177
E + + + M ++++QC++CG+ D ++LYC+ CE ++H +CL L CEVG
Sbjct: 122 I---EFLSERLRGTLVMDTIKIIQCSICGDTDVSRLSLYCQDCEAIYHETCLRGLACEVG 178
Query: 178 EKE-WC-CIEC-DGTLCRLRGNKVSSMVIR--DSNVRIYDGRMRDKRSILTECIYNRFAQ 232
++ W C +C L LR +SS + N I+ G +RDK S+ T+ +Y +
Sbjct: 179 DRNTWQECTDCRSNALLELRMGAISSQLASYDSRNSMIFAGELRDKHSVKTQQMYEQIRN 238
Query: 233 PYTISYEDKCRIQGYVRTELDKFYHRGSLSKDRYIAINKMVSRKLYGLSSTGFDPSRINY 292
K +IQ +VR LD++ KD Y +NK VSRKLY LS + P + +Y
Sbjct: 239 A-------KHKIQMHVRRALDRYPLPLLRFKDAYKHVNKQVSRKLYRLSDNKYLPDQYDY 291
Query: 293 EEQARLSI 300
+ AR +
Sbjct: 292 DSLARTGV 299
>Hs18590847 [O] KOG4628 Predicted E3 ubiquitin ligase
Length = 420
Score = 52.4 bits (124), Expect = 8e-07
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 EICGICLESMNETDQGELLPCEHRYHVSCIRKWHLYSNDFKCPTCRK 49
++C ICL+ E DQ ++LPC H YH CI W + CP C++
Sbjct: 298 DLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQ 344
>At4g09560 [O] KOG4628 Predicted E3 ubiquitin ligase
Length = 431
Score = 52.4 bits (124), Expect = 8e-07
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 ICGICLESMNETDQGELLPCEHRYHVSCIRKWHLYSNDFKCPTCRKESKSL 54
+C ICLE+ + D+ +LPC H++HV+C+ W F CP C+++++S+
Sbjct: 216 LCCICLENYEKGDKLRILPCHHKFHVACVDLWLGQRKSF-CPVCKRDARSI 265
>ECU07g0330 [O] KOG0800 FOG: Predicted E3 ubiquitin ligase
Length = 314
Score = 51.2 bits (121), Expect = 2e-06
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 5 CGICLESMNETDQGELLPCEHRYHVSCIRKWHLYSNDFKCPTCR 48
C IC+ + + + +LPC+HR+HV C+ KW L + KCP CR
Sbjct: 269 CAICMSNFIKNQRLRVLPCDHRFHVGCVDKW-LLGHSNKCPVCR 311
>At1g22670 [O] KOG4628 Predicted E3 ubiquitin ligase
Length = 422
Score = 49.3 bits (116), Expect = 7e-06
Identities = 18/49 (36%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Query: 5 CGICLESMNETDQGELLPCEHRYHVSCIRKWHLYSNDFKCPTCRKESKS 53
C ICLE D+ +LPC H++HV+C+ W + F CP C++++++
Sbjct: 232 CAICLEDYIVGDKLRVLPCSHKFHVACVDSWLISWRTF-CPVCKRDART 279
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,938,560
Number of Sequences: 60738
Number of extensions: 839257
Number of successful extensions: 3221
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3216
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 30,389,216
effective HSP length: 106
effective length of query: 198
effective length of database: 23,950,988
effective search space: 4742295624
effective search space used: 4742295624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)