ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4141  suspect: LH   N     KOG3896  Cell motility                                                  Dynactin, subunit p62

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4141 1461624  1462817 398  
         (398 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE04087 [N] KOG3896 Dynactin subunit p62                               50   5e-06
7304175 [N] KOG3896 Dynactin subunit p62                               50   6e-06

>CE04087 [N] KOG3896 Dynactin subunit p62
          Length = 413

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/97 (27%), Positives = 40/97 (40%), Gaps = 4/97 (4%)

Query: 2   AQFRYRSGCGLESNFLDLNLCTKCHLISCQQCQDFEVVGKYCSQCGKDASKNDAVYCHKN 61
           ++ +Y   CG      DL  C  C  I C  C   EV   +C +C + +S  +A      
Sbjct: 8   SRIKYECTCGKFRTLPDLVFCRYCFKIKCDDCSLGEVDNIFCPRCLEPSSVPEARLKKHK 67

Query: 62  CFQCPCCAMSLQIISNKDENNTDHRSYSFKCQGCNWS 98
           C  C  C     ++S + EN+  +      CQ C WS
Sbjct: 68  CASCNDCPKCANVLSARTENDNVY----LVCQYCRWS 100


>7304175 [N] KOG3896 Dynactin subunit p62
          Length = 514

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 3/71 (4%)

Query: 5  RYRSGCGLESNFLDLNLCTKCHLISCQQCQDFEVVGKYCSQCGKDASKNDAVY---CHKN 61
          +Y   CG+ +    L  C  C  + C  C   E+   +CS C ++    +A +   C  N
Sbjct: 10 KYACSCGILNPINTLFFCRHCPKLRCGFCVTHEIESHFCSNCLENIPSTEARHKKNCCAN 69

Query: 62 CFQCPCCAMSL 72
          CF CPCC  +L
Sbjct: 70 CFDCPCCQHTL 80


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,600,402
Number of Sequences: 60738
Number of extensions: 1244432
Number of successful extensions: 4488
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4487
Number of HSP's gapped (non-prelim): 2
length of query: 398
length of database: 30,389,216
effective HSP length: 108
effective length of query: 290
effective length of database: 23,829,512
effective search space: 6910558480
effective search space used: 6910558480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)