ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4151  good          A     KOG3503  RNA processing and modification                                H/ACA snoRNP complex, subunit NOP10

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4151 1465814  1465984 57   
         (57 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR072w-a [A] KOG3503 H/ACA snoRNP complex subunit NOP10              100   6e-22
SPAP27G11.13c [A] KOG3503 H/ACA snoRNP complex subunit NOP10           89   1e-18
7303703 [A] KOG3503 H/ACA snoRNP complex subunit NOP10                 84   4e-17
Hs8923942 [A] KOG3503 H/ACA snoRNP complex subunit NOP10               73   8e-14
At2g20490 [A] KOG3503 H/ACA snoRNP complex subunit NOP10               69   9e-13
CE27803 [A] KOG3503 H/ACA snoRNP complex subunit NOP10                 65   1e-11
Hs20474966 [A] KOG3503 H/ACA snoRNP complex subunit NOP10              59   2e-09

>YHR072w-a [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 58

 Score = 99.8 bits (247), Expect = 6e-22
 Identities = 47/56 (83%), Positives = 50/56 (88%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
          MHLMYTL   GKRIYTLKK+TE  EITKSAHPARFSPDDKYSRQRVTLKKR+ L+P
Sbjct: 1  MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVP 56


>SPAP27G11.13c [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 64

 Score = 88.6 bits (218), Expect = 1e-18
 Identities = 39/55 (70%), Positives = 49/55 (88%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
          MHLMY L+ +GKR+YTLKK++ D  +TKS+HPARFSPDDKYSRQR TLKKR+++L
Sbjct: 1  MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVL 55


>7303703 [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 64

 Score = 84.0 bits (206), Expect = 4e-17
 Identities = 38/55 (69%), Positives = 46/55 (83%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
          M+LMYT++  G R+YTLKK TED   T SAHPARFSP+DKYSRQR+T+KKR+ LL
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLL 55


>Hs8923942 [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 64

 Score = 72.8 bits (177), Expect = 8e-14
 Identities = 34/55 (61%), Positives = 41/55 (73%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
          M L Y L+ QG R+YTLKK     + T SAHPARFSPDDKYSR R+T+KKR+ +L
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVL 55


>At2g20490 [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 64

 Score = 69.3 bits (168), Expect = 9e-13
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
          M+L   ++ +G+++YT KK +     T+SAHPARFSPDDKYS+QRV LKKR+ LLP
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLP 56


>CE27803 [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 64

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 1  MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
          M L Y LD   +R+YTLK+     E T +AHPARFSP+DK S+ R+ +KKR+ LLP
Sbjct: 1  MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLP 56


>Hs20474966 [A] KOG3503 H/ACA snoRNP complex subunit NOP10
          Length = 119

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 7   LDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLL 55
           +  QG ++YTL+K     + T  AHPA+FSPDDKYSR R+T+KKR  +L
Sbjct: 62  ISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKVL 110


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,367,439
Number of Sequences: 60738
Number of extensions: 99221
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 7
length of query: 57
length of database: 30,389,216
effective HSP length: 33
effective length of query: 24
effective length of database: 28,384,862
effective search space: 681236688
effective search space used: 681236688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)