ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4229  suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4229 1490472  1493336 955  
         (955 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    53   3e-06

>YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 1502

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 35/91 (38%), Positives = 42/91 (45%), Gaps = 24/91 (26%)

Query: 34  KIQHKRQRQILSCVACHKRKIKCDRAKPVCESCGKNGWE--CLYFLNARVSRGGKHNIST 91
           KI+ KR R  LSC  C KRK+KCD+ +P C+ C K G    C Y                
Sbjct: 52  KIKRKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYM--------------- 96

Query: 92  GTEDVTASEASKE-----ELLKVIEKAKVLE 117
             E   A EA KE     EL K+ E+ K LE
Sbjct: 97  --EQTWAEEAEKELLKDNELKKLRERVKSLE 125


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,493,868
Number of Sequences: 60738
Number of extensions: 2235596
Number of successful extensions: 6192
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6192
Number of HSP's gapped (non-prelim): 1
length of query: 955
length of database: 30,389,216
effective HSP length: 116
effective length of query: 839
effective length of database: 23,343,608
effective search space: 19585287112
effective search space used: 19585287112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)