ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4338 check: MH A KOG0344 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4338 1529941 1531677 579
(579 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL171w [A] KOG0344 ATP-dependent RNA helicase 730 0.0
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 347 4e-95
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 342 7e-94
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 337 3e-92
7293941 [A] KOG0344 ATP-dependent RNA helicase 331 2e-90
CE06239 [A] KOG0344 ATP-dependent RNA helicase 233 5e-61
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 207 4e-53
YGL078c [A] KOG0331 ATP-dependent RNA helicase 196 8e-50
7294797 [A] KOG0339 ATP-dependent RNA helicase 192 1e-48
CE28369 [A] KOG0335 ATP-dependent RNA helicase 192 2e-48
CE24451 [A] KOG0335 ATP-dependent RNA helicase 192 2e-48
Hs7662318 [A] KOG0334 RNA helicase 191 2e-48
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 191 3e-48
YPL119c [A] KOG0335 ATP-dependent RNA helicase 190 4e-48
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 189 1e-47
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 188 2e-47
7298989 [A] KOG0336 ATP-dependent RNA helicase 187 3e-47
YOR204w [A] KOG0335 ATP-dependent RNA helicase 187 4e-47
7290853 [A] KOG0331 ATP-dependent RNA helicase 186 8e-47
7293060 [A] KOG0334 RNA helicase 184 3e-46
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 183 5e-46
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 183 7e-46
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 182 9e-46
At1g20920 [A] KOG0334 RNA helicase 181 2e-45
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 181 3e-45
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 181 3e-45
YNL112w [A] KOG0331 ATP-dependent RNA helicase 179 1e-44
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 179 1e-44
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 178 2e-44
7299061 [A] KOG0335 ATP-dependent RNA helicase 177 3e-44
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 177 5e-44
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 176 7e-44
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 176 7e-44
7298204 [A] KOG0335 ATP-dependent RNA helicase 176 7e-44
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 176 9e-44
CE17559 [A] KOG0339 ATP-dependent RNA helicase 176 9e-44
CE23832 [A] KOG0341 DEAD-box protein abstrakt 176 1e-43
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 176 1e-43
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 174 3e-43
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 174 3e-43
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 174 3e-43
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 173 6e-43
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 173 7e-43
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 1e-42
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 1e-42
SPCC10H11.01 [A] KOG0334 RNA helicase 171 2e-42
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 171 2e-42
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 171 2e-42
CE28031 [A] KOG0334 RNA helicase 170 5e-42
CE27427 [A] KOG0334 RNA helicase 170 5e-42
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 170 6e-42
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 169 8e-42
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 168 2e-41
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 168 2e-41
7296891 [A] KOG0341 DEAD-box protein abstrakt 168 2e-41
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 167 5e-41
7295314 [A] KOG0331 ATP-dependent RNA helicase 167 5e-41
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 166 1e-40
7296646 [A] KOG0331 ATP-dependent RNA helicase 166 1e-40
CE18785 [A] KOG0331 ATP-dependent RNA helicase 165 2e-40
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 163 6e-40
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 161 3e-39
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 159 8e-39
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 159 8e-39
At3g09620 [A] KOG0334 RNA helicase 158 2e-38
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 157 5e-38
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 155 1e-37
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 154 3e-37
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 154 3e-37
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 154 5e-37
7304081 [A] KOG0338 ATP-dependent RNA helicase 153 8e-37
CE09012 [A] KOG0335 ATP-dependent RNA helicase 150 4e-36
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 150 4e-36
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 150 4e-36
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 150 5e-36
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 149 1e-35
YBR237w [A] KOG0334 RNA helicase 149 1e-35
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 149 1e-35
CE07736 [A] KOG0335 ATP-dependent RNA helicase 148 2e-35
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 147 6e-35
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 147 6e-35
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 146 7e-35
YJL033w [A] KOG0343 RNA Helicase 145 1e-34
YHR065c [A] KOG0330 ATP-dependent RNA helicase 145 1e-34
CE25121 [A] KOG0335 ATP-dependent RNA helicase 145 2e-34
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 145 2e-34
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 144 3e-34
7297629 [A] KOG0326 ATP-dependent RNA helicase 144 3e-34
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 144 5e-34
Hs9506931 [A] KOG0346 RNA helicase 143 6e-34
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 143 6e-34
CE22474 [A] KOG0336 ATP-dependent RNA helicase 143 6e-34
YLL008w [A] KOG0338 ATP-dependent RNA helicase 143 8e-34
YDL160c [A] KOG0326 ATP-dependent RNA helicase 143 8e-34
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 143 8e-34
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 143 8e-34
CE27030 [A] KOG0338 ATP-dependent RNA helicase 142 1e-33
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 142 1e-33
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 142 1e-33
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 142 2e-33
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 141 3e-33
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 141 3e-33
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 141 3e-33
CE00839 [A] KOG0326 ATP-dependent RNA helicase 140 7e-33
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 140 7e-33
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 140 7e-33
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 139 9e-33
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 139 9e-33
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 139 1e-32
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 139 2e-32
CE00337 [A] KOG0330 ATP-dependent RNA helicase 139 2e-32
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 139 2e-32
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 139 2e-32
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 138 2e-32
7296990 [A] KOG0329 ATP-dependent RNA helicase 138 2e-32
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 138 3e-32
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 137 3e-32
CE27553 [A] KOG0337 ATP-dependent RNA helicase 137 3e-32
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 4e-32
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 6e-32
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 137 6e-32
Hs13514831 [A] KOG0343 RNA Helicase 135 1e-31
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 135 1e-31
ECU10g1680 [A] KOG0343 RNA Helicase 134 3e-31
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 134 5e-31
CE03025 [A] KOG0329 ATP-dependent RNA helicase 132 1e-30
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 132 2e-30
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 131 2e-30
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 131 2e-30
CE29052 [A] KOG0335 ATP-dependent RNA helicase 131 3e-30
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 131 3e-30
7293369 [A] KOG0343 RNA Helicase 131 3e-30
CE25231 [A] KOG0343 RNA Helicase 130 5e-30
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 129 9e-30
YHR169w [A] KOG0340 ATP-dependent RNA helicase 129 1e-29
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 129 1e-29
YDL084w [A] KOG0329 ATP-dependent RNA helicase 128 2e-29
SPBC4F6.07c [A] KOG0347 RNA helicase 128 2e-29
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 128 2e-29
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 128 2e-29
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 128 2e-29
7298752 [A] KOG0330 ATP-dependent RNA helicase 128 3e-29
CE23814 [A] KOG0340 ATP-dependent RNA helicase 125 1e-28
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 125 1e-28
SPAC1093.05 [A] KOG0343 RNA Helicase 125 2e-28
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 125 2e-28
YDL031w [A] KOG0337 ATP-dependent RNA helicase 124 3e-28
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 124 3e-28
YFL002c [A] KOG0345 ATP-dependent RNA helicase 124 5e-28
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 124 5e-28
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 123 9e-28
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 122 2e-27
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 3e-27
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 3e-27
7299006 [A] KOG0345 ATP-dependent RNA helicase 121 3e-27
7294824 [K] KOG4284 DEAD box protein 121 3e-27
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 121 3e-27
CE11190 [A] KOG0347 RNA helicase 121 3e-27
SPCC1494.06c [A] KOG0346 RNA helicase 120 4e-27
At5g54910 [A] KOG0343 RNA Helicase 120 4e-27
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 120 7e-27
At4g34910 [A] KOG0346 RNA helicase 120 7e-27
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 119 1e-26
YLR276c [A] KOG0346 RNA helicase 116 1e-25
CE18221 [A] KOG0332 ATP-dependent RNA helicase 115 1e-25
CE18220 [A] KOG0332 ATP-dependent RNA helicase 115 1e-25
CE18219 [A] KOG0332 ATP-dependent RNA helicase 115 1e-25
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 2e-25
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 115 2e-25
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 114 4e-25
YOR046c [A] KOG0332 ATP-dependent RNA helicase 113 7e-25
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 112 1e-24
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 2e-24
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 112 2e-24
7295505 [A] KOG0346 RNA helicase 112 2e-24
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 110 4e-24
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 110 8e-24
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 109 1e-23
CE03821 [A] KOG0345 ATP-dependent RNA helicase 109 1e-23
7303950 [A] KOG0340 ATP-dependent RNA helicase 109 1e-23
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 108 2e-23
YBR142w [A] KOG0347 RNA helicase 108 2e-23
CE27728 [A] KOG0346 RNA helicase 108 2e-23
CE28485 [K] KOG4284 DEAD box protein 108 3e-23
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 108 3e-23
At3g16840 [A] KOG0347 RNA helicase 107 4e-23
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 107 4e-23
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 4e-23
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 5e-23
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 107 5e-23
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 107 6e-23
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 107 6e-23
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 105 2e-22
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 105 2e-22
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 104 3e-22
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 103 5e-22
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 103 9e-22
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 103 9e-22
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 102 2e-21
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 102 2e-21
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 101 3e-21
CE26264 [A] KOG0335 ATP-dependent RNA helicase 97 7e-20
CE29051 [A] KOG0335 ATP-dependent RNA helicase 96 1e-19
Hs14251212 [K] KOG4284 DEAD box protein 95 3e-19
7296165 [A] KOG0330 ATP-dependent RNA helicase 95 3e-19
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 94 4e-19
CE11402 [A] KOG0334 RNA helicase 93 1e-18
CE06825 [A] KOG0335 ATP-dependent RNA helicase 93 1e-18
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 93 1e-18
7293348 [A] KOG0348 ATP-dependent RNA helicase 92 2e-18
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 91 4e-18
7302399 [A] KOG0347 RNA helicase 90 1e-17
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 86 1e-16
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 86 2e-16
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 84 4e-16
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 82 2e-15
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 82 2e-15
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 81 5e-15
CE27336 [A] KOG0334 RNA helicase 80 8e-15
YKR024c [A] KOG0348 ATP-dependent RNA helicase 79 1e-14
CE28975 [A] KOG0335 ATP-dependent RNA helicase 79 1e-14
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 79 2e-14
7290730 [A] KOG0331 ATP-dependent RNA helicase 78 3e-14
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 78 4e-14
Hs9966805 [A] KOG0347 RNA helicase 77 7e-14
CE15167 [A] KOG0335 ATP-dependent RNA helicase 74 5e-13
CE27320 [A] KOG0335 ATP-dependent RNA helicase 74 8e-13
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 70 1e-11
YGL064c [A] KOG0335 ATP-dependent RNA helicase 63 1e-09
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 62 2e-09
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 58 4e-08
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 57 1e-07
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 730 bits (1885), Expect = 0.0
Identities = 381/567 (67%), Positives = 441/567 (77%), Gaps = 17/567 (2%)
Query: 1 MDIFRVLTRGASIRKNGDSNRTQSADFSMANEKKSKTAGSSSTPARD--EQQLTKELDFF 58
MDIFRVLTRGAS++K + ++AD+S+ N G+ D E Q+ KELDFF
Sbjct: 1 MDIFRVLTRGASVKKESGP-KAKAADYSVIN-------GNDENHKEDNNESQIVKELDFF 52
Query: 59 RNKKIMNKVKSESTKGXXXXXXXXXXXXXXXXXXXXXXXLSGKIITKQ-DALKLRKSYQG 117
RNK+I++KV+ + K L +IT +A LRKSY+G
Sbjct: 53 RNKRIISKVEDDREK------TTENDSPNKEEKSGNDDGLIKPVITNTVEASALRKSYKG 106
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
NVSG +PLPIGSFEDLI+RF FDKRLLNNLIEN FTEPTPIQ E IP+ L+ RD++AC
Sbjct: 107 NVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACG 166
Query: 178 PTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRP 237
PTGSGKTLAFLIPL+QQII+DK T GLKGLIISPTKELANQIFIEC KL+ KI+L+KKRP
Sbjct: 167 PTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRP 226
Query: 238 LQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF 297
LQVA V+S+ KYDIIISTPLRLI VV+ EAL+L KVKHLIFDEADKLF
Sbjct: 227 LQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLF 286
Query: 298 DKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINID 357
DKTFVEQ+DDILS+C +P LRK MFSATIPSNVEEIAQ+IM DP+RVIIGHKEAAN NI+
Sbjct: 287 DKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIE 346
Query: 358 QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAER 417
Q+L+FCGNEEGKLIAIRQLV EGEFKPP+IIFLESITRAKAL+HEL+YD++NVDVIHAER
Sbjct: 347 QKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAER 406
Query: 418 TQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXX 477
T +QRD+IIERFK+G+LWCLICTDVLARG+DFKGVNLVINYDVP S+QAYVH
Sbjct: 407 TALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRG 466
Query: 478 XXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGHVERK 537
KAITFYTKQDS+AIKPIINVMKQSGCEVSEWM K++ M+++EKES+K GK H ERK
Sbjct: 467 GRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERK 526
Query: 538 QISTVPXXXXXXXXXXXEMIEASKKRK 564
QI+TVP EMI ASK+RK
Sbjct: 527 QITTVPKMDKAKRRRQQEMIAASKRRK 553
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 347 bits (889), Expect = 4e-95
Identities = 194/480 (40%), Positives = 302/480 (62%), Gaps = 20/480 (4%)
Query: 99 SGKI--ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEP 156
SGK+ + K+ LR ++ +V G +P PI +F+ L ++ + RLL N+++ F P
Sbjct: 21 SGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMP 80
Query: 157 TPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELA 216
TPIQ ++IP++LH R+++A APTGSGKTLAF IP+L Q+ G + LIISPT+ELA
Sbjct: 81 TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL-KQPANKGFRALIISPTRELA 139
Query: 217 NQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQ 276
+QI E K++ + ++ S K+DI+++TP RLI +++
Sbjct: 140 SQIHRELIKIS------EGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 193
Query: 277 EE--ALNLGKVKHLIFDEADKLFD--KT-FVEQTDDILSSCTDPHLRKTMFSATIPSNVE 331
++ ++L V+ L+ DE+DKLF+ KT F +Q I +CT +R+ MFSAT +VE
Sbjct: 194 QDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 253
Query: 332 EIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLE 391
+ + +++ I V IG + +A ++Q+L+F G+E GKL+A+R+LV +G F PPV++F++
Sbjct: 254 QWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKG-FNPPVLVFVQ 312
Query: 392 SITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKG 451
SI RAK LFHEL+Y+ +NVDVIHAERTQ QRD + F++G +W LICT +LARG+DFKG
Sbjct: 313 SIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKG 372
Query: 452 VNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSE 511
VNLVINYD P S+ Y+H KAITF+T+ D ++ + NV++Q+GC V E
Sbjct: 373 VNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPE 432
Query: 512 WMQKISS-MSKREKESLKKGKGHVERKQISTVPXXXXXXXXXXXEMIEA-SKKRKLSVSD 569
+++ +SK++K+ +KK +ER+ IST P + + + K+K+++ D
Sbjct: 433 YIKGFQKLLSKQKKKMIKK---PLERESISTTPKCFLEKAKDKQKKVTGQNSKKKVALED 489
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 342 bits (878), Expect = 7e-94
Identities = 190/476 (39%), Positives = 289/476 (59%), Gaps = 21/476 (4%)
Query: 103 ITKQDALKLRKSYQGN--VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQ 160
I +++A KL+ +G V+GN+ PI F + I L NL + N TE T IQ
Sbjct: 22 IKEKEAKKLQGITKGKAKVTGNNPVDPIEEFPEGI--------LCENLKKQNITECTTIQ 73
Query: 161 SESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIF 220
+IP + +RD++ACAPTGSGKT+A+L P+LQ++ G + +I++PT+EL QI+
Sbjct: 74 RYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKL-QLHVPGGYRAIIVAPTRELCEQIY 132
Query: 221 IECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEAL 280
+ KL+ L++ +KYD+ I TP+RL+ +Q L
Sbjct: 133 RQAEKLSFGT------SLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQT-GL 185
Query: 281 NLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMND 340
+ KV+ + DEAD+LF+ F+EQTD ILS+CT ++ K++FSATIPS VEE+A+ + D
Sbjct: 186 SFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVD 245
Query: 341 PIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
PIR+I+G K+AA +IDQ+L+F G++ K++ +RQ++ GE KP V+IF++ I RAKAL+
Sbjct: 246 PIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALY 305
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
ELL+D+++V VIH E Q +R++ + +F+ G++W LI TD+LARG+DF GV +VIN+D
Sbjct: 306 TELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDF 365
Query: 461 PRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMS 520
P+S +Y+H +A+TF+TK+D IK I VM+ SGCEV W+ + S
Sbjct: 366 PQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPS 425
Query: 521 KREKESLKKGKGHVERKQISTVPXXXXXXXXXXXEMIEASKKRKLSVSDAEEEAGN 576
K K+ LKK +RK+I+T E I+ KK + S+ E G+
Sbjct: 426 KEMKKKLKKSP--PKRKRITTRASYDRQKEQRKKEYIKKVKK-EASIKKHNEATGD 478
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 337 bits (864), Expect = 3e-92
Identities = 189/446 (42%), Positives = 283/446 (63%), Gaps = 30/446 (6%)
Query: 105 KQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESI 164
++DAL RK Y +VSGN++P P+ SF +L +R+ + +L NL E F EPTPIQ ++I
Sbjct: 114 ERDALS-RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAI 172
Query: 165 PILLHERDMIACAPTGSGKTLAFLIPLL--QQIINDK-TTVGLKGLIISPTKELANQIFI 221
PILL R+ ACAPTGSGKT AF+ P+L +++N + +T G++ +I+SP +ELA Q
Sbjct: 173 PILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAR 232
Query: 222 ECSKLAN----KIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQE 277
E KL I L K ++ A S+ D++ISTP+RL ++
Sbjct: 233 EGKKLIKGSNFHIRLMTKPLVKTAD-------------FSKLWCDVLISTPMRLKRAIKA 279
Query: 278 EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTI 337
+ ++L KV++L+ DE+DKLF+++ ++Q D ++ +C++P + +++FSAT+P +VEE+A++I
Sbjct: 280 KKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSI 339
Query: 338 MNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAK 397
M+D +RVIIG K A+ + Q+LVF G+EEGKL+A+RQ E PPV+IF++S RAK
Sbjct: 340 MHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKERAK 398
Query: 398 ALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVIN 457
L+ EL + + VIH++ +R+ +++F++G+ W LI TDV+ARG+DFKG+N VIN
Sbjct: 399 ELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVIN 458
Query: 458 YDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
YD P SA AY+H +AITFYT+QD ++ I N M SGCEV W I
Sbjct: 459 YDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSW---IM 515
Query: 518 SMSKREKESLKKGKGHVERKQISTVP 543
S+ K+ K K R IST P
Sbjct: 516 SLKKK-----KWRKHRPRRDSISTKP 536
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 331 bits (849), Expect = 2e-90
Identities = 181/441 (41%), Positives = 276/441 (62%), Gaps = 15/441 (3%)
Query: 106 QDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIP 165
++A + RK Y V G +VP P+ SF L F+ RL NL+ NF PTPIQ +++P
Sbjct: 92 EEANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQALP 151
Query: 166 ILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSK 225
+LL R ++ACAPTGSGKTLAFL P++ + KTT GL+ L+++PT+ELA QI+ EC++
Sbjct: 152 VLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTT-GLRALVLAPTRELAQQIYRECAE 210
Query: 226 LANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA--LNLG 283
L ++ L+ + +YDI++STP R+ ++Q+E L+L
Sbjct: 211 LT------RETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQEPPLLDLS 264
Query: 284 KVKHLIFDEADKLFDK---TFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMND 340
V+ + DEAD+L ++ F EQ DDI ++C++P FSAT V + A + +
Sbjct: 265 HVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHLKN 324
Query: 341 PIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
+R+ IG + +A + Q+L+F G+E GKL+AIR LV +G +PPV++F++S RAK LF
Sbjct: 325 LVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQG-LQPPVLVFVQSKERAKQLF 383
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
ELLYD +NVDVIHAER+Q QRD ++ F+ G +W LICT+++ RG+DFKGVNLVINYD
Sbjct: 384 EELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDF 443
Query: 461 PRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMS 520
P + +Y+H +AITF+T++D+ ++ I ++K SG V E+M ++ +
Sbjct: 444 PPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVPEYMLQMKKV- 502
Query: 521 KREKESLKKGKGHVERKQIST 541
R+ E+ + K ++R+ IST
Sbjct: 503 -RKSEAKMRAKKPLDREDIST 522
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 233 bits (595), Expect = 5e-61
Identities = 151/464 (32%), Positives = 241/464 (51%), Gaps = 52/464 (11%)
Query: 133 DLITRFQ---FDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
++I RF LLN L EN+ +P+PIQ +SIP + R+++A APTGSGKTLAF +
Sbjct: 123 NIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFAL 182
Query: 190 PLLQQIINDKTTVG--------LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVA 241
P++ +I+ K L +++ PT+ELA Q + E L+
Sbjct: 183 PVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEF--------------LKYC 228
Query: 242 XXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF---- 297
DI++STP R+ V + ++ ++ L+ DE+D+LF
Sbjct: 229 ANTSISAANFSGEETDIQHADILVSTPNRI--VFHLDKIDTSSLRWLVVDESDRLFEVVE 286
Query: 298 --DKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANIN 355
DK F Q I +C R FSAT VE+ + +++ V +G + ++N +
Sbjct: 287 GQDKCFRNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTS 346
Query: 356 IDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHEL--LYDKLNVDVI 413
+ Q+L +CG E+GK IAIR L L FKPP ++F++S RA L L + L VD I
Sbjct: 347 VKQKLTYCGTEDGKKIAIRNL-LRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSI 405
Query: 414 HAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXX 473
++ ++ +RD+ +ERF+ G++W L+CT++L RG+D V LVINYD+P S +Y+H
Sbjct: 406 NSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGR 465
Query: 474 XXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK-REKESLKKGKG 532
A+T++T D IK I V++QSG +V E++ ++ +S+ R+K+ LK
Sbjct: 466 TGRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLMEMKKVSRDRKKDMLKHAP- 524
Query: 533 HVERKQISTVPXXXXXXXXXXXEMIEASKKRKLSVSDAEEEAGN 576
+R +I+ V KK+ L+ + AEE+A N
Sbjct: 525 --KRHKIAIVKEQV------------IKKKKMLAKAAAEEKAKN 554
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 207 bits (527), Expect = 4e-53
Identities = 137/434 (31%), Positives = 218/434 (49%), Gaps = 16/434 (3%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T Q + LR VSG + P P SF F FD++L++ + ++ +T+PTPIQ +
Sbjct: 108 LTPQQLIDLRHKLNLRVSGAAPPRPGSSF----AHFGFDEQLMHQIRKSEYTQPTPIQCQ 163
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV---GLKGLIISPTKELANQI 219
+P+ L RDMI A TGSGKT AF+ P+L I++ K G +I+ PT+EL QI
Sbjct: 164 GVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQI 223
Query: 220 FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA 279
EC + K L+ + E +I++ TP RLI V+++A
Sbjct: 224 HAECKRFG------KAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVKKKA 276
Query: 280 LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMN 339
NL +V +L+FDEAD++FD F Q I S P + +FSAT +E++A+ I+
Sbjct: 277 TNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR-PDRQTLLFSATFRKKIEKLARDILI 335
Query: 340 DPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKAL 399
DPIRV+ G AN ++ Q + + K + + ++E V++F+ A+ L
Sbjct: 336 DPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEEL 395
Query: 400 FHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYD 459
+ L + N+ ++H + Q +R+K+I FK D+ L+ TDV ARG+D + VINYD
Sbjct: 396 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYD 455
Query: 460 VPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSM 519
V R + H A T T +DS ++ ++ + VS+ + ++
Sbjct: 456 VARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 515
Query: 520 SK-REKESLKKGKG 532
+ K K GKG
Sbjct: 516 NAWFRKSRFKGGKG 529
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 196 bits (498), Expect = 8e-50
Identities = 135/396 (34%), Positives = 212/396 (53%), Gaps = 18/396 (4%)
Query: 140 FDKRLLNNLIE---NNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII 196
FD L++ I+ + F +PTPIQ+ + P LL +D++ A TGSGKT AF +P + ++
Sbjct: 116 FDYLSLDSSIQAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLM 175
Query: 197 NDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVI 256
ND+ G++ L+ISPT+ELA+QI+ N I L K +Q I
Sbjct: 176 NDQKKRGIQVLVISPTRELASQIY------DNLIVLTDKVGMQCCCVYGGVPKDEQR--I 227
Query: 257 SEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPH 316
K ++++TP RL+ ++QE +++L +V +L+ DEAD++ +K F E +I+ TD
Sbjct: 228 QLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRE-TDAS 286
Query: 317 LRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKE--AANINIDQ--QLVFCGNEEGKLI 371
R+T MF+AT P V E+A T MN+PI+V IG+ + AN I Q ++V +E KL+
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346
Query: 372 AIRQLVLEGEFK-PPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFK 430
+ + G K V+IF A + L Y+ NV IH + +Q QR + + FK
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406
Query: 431 SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQ 490
SG L+ TDV ARG+D V VIN P + + YVH A T +T+Q
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQ 466
Query: 491 DSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKES 526
+ ++NV+ + V E + K + +K+++ S
Sbjct: 467 EKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHS 502
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 192 bits (488), Expect = 1e-48
Identities = 133/431 (30%), Positives = 221/431 (50%), Gaps = 24/431 (5%)
Query: 110 KLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH 169
+LR++ V+G S P P+ SF F FD++L+ + + +T+PTPIQ++++P L
Sbjct: 250 ELRRTLGVKVTGPSPPKPVTSFG----HFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALS 305
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV---GLKGLIISPTKELANQIFIECSKL 226
RD+I A TGSGKT AF+ P+L +++ K G GLI++PT+EL+ QI+ E K
Sbjct: 306 GRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKF 365
Query: 227 ANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVK 286
K+Y L V + E +II++TP R+I +V+ +A NL +V
Sbjct: 366 G-KVY-----NLNVVCCYGGGSKWEQSKAL-EQGAEIIVATPGRMIDMVKMKATNLRRVT 418
Query: 287 HLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVII 346
L+ DEAD++F F Q I + P + MFSAT +E +A+ +++DP+R++
Sbjct: 419 FLVLDEADRMFHMGFEPQVRSICNHVR-PDRQCLMFSATFKKRIERLARDVLSDPVRIVQ 477
Query: 347 GHKEAANINIDQQLVFCGNEEGK----LIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
G AN +I Q + N K L + + + EG V+IF+ A+ + +
Sbjct: 478 GDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGS----VLIFVTKKVDAETVSNN 533
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
LL + N ++H + Q R+K+I +FK + L+ TDV ARG+D + V+NYD R
Sbjct: 534 LLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTAR 593
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKR 522
+ + H A T T +D ++ ++ + V + + +++ S
Sbjct: 594 DIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMKSSW 653
Query: 523 EKES-LKKGKG 532
+ S K+GKG
Sbjct: 654 FRSSRFKQGKG 664
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 192 bits (487), Expect = 2e-48
Identities = 126/416 (30%), Positives = 215/416 (51%), Gaps = 27/416 (6%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
VSG+SVP I F + F ++ N+ + +++PTP+Q SIP LL RD+++CA
Sbjct: 113 VSGDSVPAAIEHFNEA----GFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQ 168
Query: 179 TGSGKTLAFLIPLLQQII-------------NDKTTVGLKGLIISPTKELANQIFIECSK 225
TGSGKT AFL+P++Q I+ N + T L++SPT+ELA QI E +K
Sbjct: 169 TGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATK 228
Query: 226 LANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKV 285
+ K +Q A I+I+TP RLI ++++ + L
Sbjct: 229 FSYK------SNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGC 282
Query: 286 KHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT--MFSATIPSNVEEIAQTIMNDP-I 342
++L+ DEAD++ D F Q I+ P +T MFSAT P ++ +A+ + D I
Sbjct: 283 RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYI 342
Query: 343 RVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
+ +G + + NI+Q+L++ NE K + ++++ + V++F+E+ A L +
Sbjct: 343 FLAVGRVGSTSENIEQRLLWV-NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYF 401
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L ++ IH + Q++R++ +E F+SG L+ T V ARG+D V VINYD+P
Sbjct: 402 LNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPG 461
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
+ YVH A +F+ ++ + + N++ +S EV EW+ ++++
Sbjct: 462 DSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVAA 517
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 192 bits (487), Expect = 2e-48
Identities = 126/416 (30%), Positives = 215/416 (51%), Gaps = 27/416 (6%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
VSG+SVP I F + F ++ N+ + +++PTP+Q SIP LL RD+++CA
Sbjct: 110 VSGDSVPAAIEHFNEA----GFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQ 165
Query: 179 TGSGKTLAFLIPLLQQII-------------NDKTTVGLKGLIISPTKELANQIFIECSK 225
TGSGKT AFL+P++Q I+ N + T L++SPT+ELA QI E +K
Sbjct: 166 TGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATK 225
Query: 226 LANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKV 285
+ K +Q A I+I+TP RLI ++++ + L
Sbjct: 226 FSYK------SNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGC 279
Query: 286 KHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT--MFSATIPSNVEEIAQTIMNDP-I 342
++L+ DEAD++ D F Q I+ P +T MFSAT P ++ +A+ + D I
Sbjct: 280 RYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYI 339
Query: 343 RVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
+ +G + + NI+Q+L++ NE K + ++++ + V++F+E+ A L +
Sbjct: 340 FLAVGRVGSTSENIEQRLLWV-NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYF 398
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L ++ IH + Q++R++ +E F+SG L+ T V ARG+D V VINYD+P
Sbjct: 399 LNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPG 458
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
+ YVH A +F+ ++ + + N++ +S EV EW+ ++++
Sbjct: 459 DSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVAA 514
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 191 bits (486), Expect = 2e-48
Identities = 132/424 (31%), Positives = 215/424 (50%), Gaps = 23/424 (5%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
V G P PI S+ + ++LN+L ++ + +PTPIQ+++IP ++ RD+I A
Sbjct: 362 VKGKGCPKPIKSW----VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAK 417
Query: 179 TGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQIFIECSKLANKIYLDKK 235
TGSGKT+AFL+P+ + I++ ++ +G +I++PT+ELA QI EC K + K
Sbjct: 418 TGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFS------KT 471
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA---LNLGKVKHLIFDE 292
L+V + +II+ TP R+I ++ + NL +V +++ DE
Sbjct: 472 LGLRVVCVYGGTGISEQIAELKRGA-EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDE 530
Query: 293 ADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAA 352
AD++FD F Q I+ + P + MFSAT P +E +A+ I++ PI V +G +
Sbjct: 531 ADRMFDMGFEPQVMRIVDNVR-PDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVV 589
Query: 353 NINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDV 412
+++QQ++ EE K + + +L+ + VIIF++ A L +L+
Sbjct: 590 CSDVEQQVIVI-EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMS 648
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXX 472
+H Q RD II FK+G L+ T V ARG+D K + LV+NY P + YVH
Sbjct: 649 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAG 708
Query: 473 XXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS----MSKREKESLK 528
A TF T+ + II ++ SG V ++K+ S K E + +K
Sbjct: 709 RTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIK 768
Query: 529 KGKG 532
K G
Sbjct: 769 KSSG 772
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 191 bits (484), Expect = 3e-48
Identities = 128/417 (30%), Positives = 212/417 (50%), Gaps = 35/417 (8%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T+QD R +V G VP P+ F+D F +L + + FTEPTPIQ++
Sbjct: 112 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDA----NFPDNILEAIAKLGFTEPTPIQAQ 167
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQI 219
P+ L RD+I A TGSGKTLA+L+P L + G LI++PT+ELA QI
Sbjct: 168 GWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 227
Query: 220 FIECSKLANK-------IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
E K + IY + Q+ +I+I+TP RLI
Sbjct: 228 QEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGV--------------EIVIATPGRLI 273
Query: 273 TVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEE 332
+++ + NL +V +L+ DEAD++ D F Q I+S P + ++SAT P VE
Sbjct: 274 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR-PDRQTLLWSATWPREVET 332
Query: 333 IAQTIMNDPIRVIIGHKEA-ANINIDQ--QLVFCGNEEGKLIAIRQLVLEGEFKPPVIIF 389
+A+ + DP + IIG + AN +I+Q ++V + +L+ + + +++G ++IF
Sbjct: 333 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGS---KILIF 389
Query: 390 LESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDF 449
+E+ + +L D IH ++TQ +RD+++ FKSG + TDV ARG+D
Sbjct: 390 VETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDV 449
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSG 506
K + V+NYD P + + Y+H A TF+T ++ + ++ +++++G
Sbjct: 450 KDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAG 506
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 190 bits (483), Expect = 4e-48
Identities = 125/421 (29%), Positives = 211/421 (49%), Gaps = 29/421 (6%)
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
+ SG VP PI F D+ L+ N+ +FT+PTP+Q SIPI+ RD++ACA
Sbjct: 143 DASGKDVPEPILDFSSP----PLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACA 198
Query: 178 PTGSGKTLAFLIPLLQQIIND---------KTTVGLKG----LIISPTKELANQIFIECS 224
TGSGKT FL PL ++ ++ KG L+++PT+ELA QIF E
Sbjct: 199 QTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEAR 258
Query: 225 KLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK 284
K + ++ RP V + D++++TP RL +++ ++L
Sbjct: 259 KFTYRSWV---RPCVVYGGAPIGNQMREV----DRGCDLLVATPGRLNDLLERGKVSLAN 311
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL--RKT-MFSATIPSNVEEIAQTIMNDP 341
+K+L+ DEAD++ D F Q I+ C P + R+T MFSAT P +++ +A+ +++
Sbjct: 312 IKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNY 371
Query: 342 IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFH 401
I + +G + + NI Q++++ + + K + +L E K +IF+E+ A L
Sbjct: 372 IFLSVGRVGSTSENITQRILYVDDMDKKSALLD--LLSAEHKGLTLIFVETKRMADQLTD 429
Query: 402 ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
L+ IH +RTQ +R++ + FK+ L+ T V ARG+D V VINYD+P
Sbjct: 430 FLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLP 489
Query: 462 RSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK 521
YVH A +F+ + +K ++ ++ ++ EV ++ +S +
Sbjct: 490 SDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQNS 549
Query: 522 R 522
R
Sbjct: 550 R 550
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 189 bits (479), Expect = 1e-47
Identities = 129/421 (30%), Positives = 213/421 (49%), Gaps = 35/421 (8%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T + + RK + V G +P P+ SF D+ F +L + + FTEPTPIQS+
Sbjct: 73 MTDTEVEEYRKLREITVEGKDIPKPVKSFRDV----GFPDYVLEEVKKAGFTEPTPIQSQ 128
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQI 219
P+ + RD+I A TGSGKTL++L+P + + G L+++PT+ELA QI
Sbjct: 129 GWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQI 188
Query: 220 FIECSKLANK-------IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
E SK + IY + QV + +I+I+TP RLI
Sbjct: 189 QQEASKFGSSSKIKTTCIYGGVPKGPQVRDL--------------QKGVEIVIATPGRLI 234
Query: 273 TVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEE 332
+++ NL +V +L+ DEAD++ D F Q I+S P + +SAT P VE+
Sbjct: 235 DMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR-PDRQTLYWSATWPKEVEQ 293
Query: 333 IAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEE---GKLIAIRQLVLEGEFKPPVIIF 389
+++ + +P +VIIG + +Q+V +E KL+ + + +++G +++F
Sbjct: 294 LSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGS---RILVF 350
Query: 390 LESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDF 449
L++ + +L D IH +++Q +RD ++ F+SG + TDV ARG+D
Sbjct: 351 LDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDV 410
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEV 509
K V VINYD P S + YVH A TF+T ++ K + N+++++G +V
Sbjct: 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKV 470
Query: 510 S 510
S
Sbjct: 471 S 471
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 188 bits (478), Expect = 2e-47
Identities = 131/444 (29%), Positives = 232/444 (51%), Gaps = 30/444 (6%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T+Q+ R+ VSG V P+ +FED F ++++ + + + +PT IQ +
Sbjct: 202 MTEQETTDYRQRLGIRVSGFDVHRPVKTFEDC----GFSSQIMSAIKKQAYEKPTAIQCQ 257
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND---KTTVGLKGLIISPTKELANQI 219
++PI+L RD+I A TGSGKT AF++P++ I++ + G G+I +PT+ELA+QI
Sbjct: 258 ALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
Query: 220 FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA 279
F+E K + K L+V+ + +I+++TP RLI +++ +A
Sbjct: 318 FLEAKKFS------KAYGLRVSAVYGGMSKHEQFKELKAG-CEIVVATPGRLIDMLKMKA 370
Query: 280 LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMN 339
L + + +L+ DEAD++FD F Q I+ P + +FSAT+P VE++A+ I++
Sbjct: 371 LTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR-PDRQTLLFSATMPWKVEKLAREILS 429
Query: 340 DPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQ----LVLEGEFKPPVIIFLESITR 395
DPIRV +G AN +I Q + ++ KL + + ++ EG+ V++F
Sbjct: 430 DPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGD----VLVFASKKAT 485
Query: 396 AKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLV 455
+ +L + V +H ++ Q R + +++FKSG LI TDV ARG+D K + V
Sbjct: 486 VDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTV 545
Query: 456 INYDVPRSAQAYVH-XXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQ 514
+NYD+ + +VH A T T++++ ++N + +G V +
Sbjct: 546 VNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELT 605
Query: 515 KISS-----MSKRE-KESLKKGKG 532
++ SKR+ ++ KKG+G
Sbjct: 606 DLAMKDGRFKSKRDGRKGGKKGRG 629
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 187 bits (476), Expect = 3e-47
Identities = 125/413 (30%), Positives = 205/413 (49%), Gaps = 29/413 (7%)
Query: 124 VPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGK 183
+P P+ +FE + +L + + F++P+PIQS++ PILL DMI A TG+GK
Sbjct: 277 IPNPVWTFEQCFAEYP---DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGK 333
Query: 184 TLAFLIPLLQQIINDKTTVGLKG----LIISPTKELANQIFIECSKLANK------IYLD 233
TLAFL+P + T G +G L+++PT+ELA QI +E K + + +Y
Sbjct: 334 TLAFLLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGG 393
Query: 234 KKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEA 293
R +Q++ E +III TP RL ++ +++ + +L+ DEA
Sbjct: 394 GNRNMQISDL--------------ERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEA 439
Query: 294 DKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKE-AA 352
D++ D F Q ++ P + M SAT P V +AQ+ M +PI+V +G + AA
Sbjct: 440 DRMLDMGFEPQIRKVMLDIR-PDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAA 498
Query: 353 NINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDV 412
++ Q + ++ K I V +IIF RA L EL D
Sbjct: 499 THSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQC 558
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXX 472
IH R Q+ R++ I KSG + L+ TDV +RG+D + + VINYD P + + YVH
Sbjct: 559 IHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVG 618
Query: 473 XXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKE 525
+I+F+T++D K +I +++++ EV + + ++ K K+
Sbjct: 619 RTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKAMKD 671
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 187 bits (475), Expect = 4e-47
Identities = 125/429 (29%), Positives = 210/429 (48%), Gaps = 29/429 (6%)
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
+ SG VP PI F T D LL N+ FT+PTP+Q S+PI+ + RD++ACA
Sbjct: 131 DASGKDVPEPITEF----TSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACA 186
Query: 178 PTGSGKTLAFLIPLLQQIINDKTTVGLKG-------------LIISPTKELANQIFIECS 224
TGSGKT FL P+L + + + +I++PT+ELA QIF E
Sbjct: 187 QTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAK 246
Query: 225 KLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK 284
K + ++ A E D++++TP RL +++ ++L
Sbjct: 247 KFTYRSWVK-------ACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSC--TDPHLRKT-MFSATIPSNVEEIAQTIMNDP 341
VK+L+ DEAD++ D F Q I+ C T R+T MFSAT P++++ +A+ ++D
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359
Query: 342 IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFH 401
I + +G + + NI Q++++ N++ K + +L +IF+E+ A L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLD--LLSASTDGLTLIFVETKRMADQLTD 417
Query: 402 ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
L+ IH +RTQ +R++ + F+SG L+ T V ARG+D V VINYD+P
Sbjct: 418 FLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLP 477
Query: 462 RSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK 521
YVH A F+ ++S +K + ++ ++ EV +++ +
Sbjct: 478 SDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAP 537
Query: 522 REKESLKKG 530
+ + ++G
Sbjct: 538 GSRSNSRRG 546
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 186 bits (472), Expect = 8e-47
Identities = 125/413 (30%), Positives = 210/413 (50%), Gaps = 20/413 (4%)
Query: 104 TKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSES 163
++Q ++R+ + VSGN +P P+ SFE+ ++ + FT+PT IQS+
Sbjct: 212 SEQQVAEIRRELEITVSGNELPHPVVSFEES----SLPAHVIEEMKRQGFTKPTAIQSQG 267
Query: 164 IPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQIF 220
PI L RD++ A TGSGKTLA+++P + I N + +G L+++PT+ELA QI
Sbjct: 268 WPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQ 327
Query: 221 IECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEAL 280
S + + +L K + + ++II+TP RLI ++
Sbjct: 328 ---SVVRDYGHLCKPEIRHTCIFGGSSKVPQARDL--DRGVEVIIATPGRLIDFLENRNT 382
Query: 281 NLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMND 340
NL + +L+ DEAD++ D F Q I+ P + M+SAT P V+ +A +ND
Sbjct: 383 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR-PDRQVVMWSATWPKEVQALAGDFLND 441
Query: 341 PIRVIIGHKE-AANINIDQQLVFCGNEEGK------LIAIRQLVLEGEFKPPVIIFLESI 393
I++ IG +AN NI Q + C E L I + G +I+F+E+
Sbjct: 442 YIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETK 501
Query: 394 TRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVN 453
+ + + + + N IH ++TQ +RD +++ F++G LI TDV +RG+D + +
Sbjct: 502 IKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQ 561
Query: 454 LVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSG 506
VINYD P S++ YVH A TF+T ++ + +I+V++++G
Sbjct: 562 YVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAG 614
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 184 bits (467), Expect = 3e-46
Identities = 147/492 (29%), Positives = 231/492 (46%), Gaps = 40/492 (8%)
Query: 103 ITKQDALKLRKSYQG-NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
+T D K R +G V G P PI ++ + K+ + L F +PTPIQ
Sbjct: 483 MTAADVEKYRSDLEGIQVKGKGCPKPIKTW----AQCGVSKKEMEVLRRLGFEKPTPIQC 538
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV---GLKGLIISPTKELANQ 218
++IP ++ RD+I A TGSGKTLAF++P+ + I++ + G +I++PT+EL Q
Sbjct: 539 QAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQ 598
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY--DIIISTPLRLITVVQ 276
I + K + + L RP+ V I+E K +II+ TP R+I ++
Sbjct: 599 IGKDIRKFSKSLGL---RPVCVYGGTGISEQ------IAELKRGAEIIVCTPGRMIDMLA 649
Query: 277 EEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEI 333
+ NL +V +++ DEAD++FD F Q I+ + P + MFSAT P +E +
Sbjct: 650 ANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVR-PDRQTVMFSATFPRQMEAL 708
Query: 334 AQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESI 393
A+ I+ PI VI+G + ++Q +V N++ K + +L+ + +I+F++
Sbjct: 709 ARRILKKPIEVIVGGRSVVCKEVEQHVVIL-NDDAKFFKLLELLGIYQEAGSIIVFVDKQ 767
Query: 394 TRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVN 453
A L +L+ +H Q RD I FKSG + LI T V ARG+D K +
Sbjct: 768 ENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLI 827
Query: 454 LVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWM 513
LV+NYDVP + YVH A TF T + S II M SG + +
Sbjct: 828 LVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAEL 887
Query: 514 QKISSMSKREKESLKKGKGHVERKQISTVPXXXXXXXXXXXEMIEASKKRK--------L 565
Q + + K +E+ E K + T + A+K+ K L
Sbjct: 888 QALWTEYKALQEA--------EGKTVHTGGGFSGKGFKFDEQEFNAAKESKKLQKAALGL 939
Query: 566 SVSDAEEEAGND 577
+ SD EE+ D
Sbjct: 940 ADSDDEEDIEQD 951
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 183 bits (465), Expect = 5e-46
Identities = 120/417 (28%), Positives = 214/417 (50%), Gaps = 31/417 (7%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
+GN+ P I SF D+ + + ++ N+ +T PTP+Q +IPI+ +RD++ACA T
Sbjct: 171 TGNNCPPHIESFSDV----EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQT 226
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKG----------------LIISPTKELANQIFIEC 223
GSGKT AFL+P+L QI +D L+ L+++PT+ELA QI+ E
Sbjct: 227 GSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 286
Query: 224 SKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLG 283
K + Y + RP V E ++++TP RL+ +++ + L
Sbjct: 287 RKFS---YRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLD 339
Query: 284 KVKHLIFDEADKLFDKTFVEQTDDILSSCTDPH--LRKTM-FSATIPSNVEEIAQTIMND 340
K+L+ DEAD++ D F Q I+ T P +R TM FSAT P ++ +A+ +++
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 399
Query: 341 PIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
I + +G + + NI Q++V+ + + + L G+ ++F+E+ A +L
Sbjct: 400 YIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGK-DSLTLVFVETKKGADSLE 458
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
L ++ IH +R+Q R++ + +F+SG L+ T V ARG+D V VIN+D+
Sbjct: 459 DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 518
Query: 461 PRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
P + YVH A +F+ +++ K +++++ ++ EV W++ ++
Sbjct: 519 PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 183 bits (464), Expect = 7e-46
Identities = 130/417 (31%), Positives = 214/417 (51%), Gaps = 34/417 (8%)
Query: 103 ITKQDALKLRKSYQGNVSGNSV-PLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
+T + +LR+ + V G V P P+ +F F + +++ L++ +FTEPTPIQ
Sbjct: 65 LTPYEVDELRRKKEITVRGGDVCPKPVFAFHHA----NFPQYVMDVLMDQHFTEPTPIQC 120
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQ 218
+ P+ L RDM+ A TGSGKTLA+L+P + I + G L+++PT+ELA Q
Sbjct: 121 QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQ 180
Query: 219 I------FIECSKLANK-IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRL 271
+ + +CS+L + IY + Q+ E +I I+TP RL
Sbjct: 181 VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDL--------------ERGVEICIATPGRL 226
Query: 272 ITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVE 331
I ++ NL + +L+ DEAD++ D F Q I+ P + M+SAT P V
Sbjct: 227 IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSATWPKEVR 285
Query: 332 EIAQTIMNDPIRVIIGHKE-AANINIDQQLVFC--GNEEGKLIAIRQLVLEGEFKPPVII 388
++A+ + D ++ +G+ E +AN NI Q + C ++ KLI + + ++ E + II
Sbjct: 286 QLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM-AEKENKTII 344
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F+E+ R L + D IH +++Q +RD ++ F+SG LI TDV +RG+D
Sbjct: 345 FVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 404
Query: 449 FKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQS 505
+ V VINYD P S++ YVH A TF+T + + +I V++++
Sbjct: 405 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 461
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 182 bits (463), Expect = 9e-46
Identities = 132/419 (31%), Positives = 212/419 (50%), Gaps = 36/419 (8%)
Query: 113 KSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERD 172
+ ++ VSG VP P+ SFE F LL ++ F+ PTPIQ++S PI + RD
Sbjct: 142 RRHEITVSGGQVPPPLMSFEAT----GFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 173 MIACAPTGSGKTLAFLIP---LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANK 229
++A A TGSGKTL +LIP LQ+I ND + +G L++SPT+ELA QI E K
Sbjct: 198 IVAIAKTGSGKTLGYLIPGFLHLQRIRND-SRMGPTILVLSPTRELATQIQEEAVKFGRS 256
Query: 230 -------IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNL 282
+Y + Q+ E DI+++TP RL +++ ++L
Sbjct: 257 SRISCTCLYGGAPKGPQLRDL--------------ERGADIVVATPGRLNDILEMRRISL 302
Query: 283 GKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDP 341
++ +L+ DEAD++ D F Q I+ P R+T M++AT P V +IA ++ +P
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEI--PTKRQTLMYTATWPKGVRKIAADLLVNP 360
Query: 342 IRVIIGHKE--AANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKAL 399
+V IG+ + AN +I Q + E K + Q++ E VIIF + L
Sbjct: 361 AQVNIGNVDELVANKSITQHIEVVAPME-KQRRLEQILRSQEPGSKVIIFCSTKRMCDQL 419
Query: 400 FHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYD 459
L + IH +++Q +RD ++ +F+SG L+ TDV ARG+D K + V+NYD
Sbjct: 420 TRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYD 478
Query: 460 VPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
P + YVH +A TF+ QDS +I +++ + V ++++++
Sbjct: 479 FPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMAT 537
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 181 bits (460), Expect = 2e-45
Identities = 124/440 (28%), Positives = 222/440 (50%), Gaps = 26/440 (5%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T+++ RK + V G VP PI + ++L+ + + N+ +P PIQ++
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQT----GLTSKILDTMKKLNYEKPMPIQTQ 558
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV----GLKGLIISPTKELANQ 218
++PI++ RD I A TGSGKTL F++P+L+ I D+ V G GL+++PT+EL Q
Sbjct: 559 ALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVEAGDGPIGLVMAPTRELVQQ 617
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY--DIIISTPLRLITVV- 275
I + K + +PL + ISE K +I++ TP R+I ++
Sbjct: 618 IHSDIRKFS--------KPLGIRCVPVYGGSGVAQQ-ISELKRGTEIVVCTPGRMIDILC 668
Query: 276 --QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEI 333
+ NL +V L+ DEAD++FD F Q I+ + P + +FSAT P VE +
Sbjct: 669 TSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR-PERQTVLFSATFPRQVETL 727
Query: 334 AQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESI 393
A+ ++N P+ + +G + N +I Q LV E + + + +L+ E K +++F++S
Sbjct: 728 ARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQ 786
Query: 394 TRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVN 453
+ AL+ +++ +H + Q R+ I FK+ LI T V ARG+D K +
Sbjct: 787 EKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELE 846
Query: 454 LVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWM 513
LV+N+D P + YVH A+TF ++ D+ ++ ++ S V + +
Sbjct: 847 LVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDL 906
Query: 514 QKIS-SMSKREKESLKKGKG 532
+ ++ + K+ +++ G
Sbjct: 907 KALADGFMVKVKQGIEQAHG 926
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 181 bits (459), Expect = 3e-45
Identities = 125/424 (29%), Positives = 209/424 (48%), Gaps = 33/424 (7%)
Query: 124 VPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGK 183
+P P +F+D FQ ++ N+ + F +PTPIQS++ PI+L D+I A TG+GK
Sbjct: 236 IPNPTCTFDDA---FQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGK 292
Query: 184 TLAFLIPLLQQIINDKTTVGLKG----LIISPTKELANQIFIECSKLANK------IYLD 233
TL +L+P ++ + G + L+++PT+ELA Q+ EC K + K +Y
Sbjct: 293 TLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGG 352
Query: 234 KKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEA 293
R Q+ + DIII+TP RL + +NL + +L+ DEA
Sbjct: 353 GNRDEQIEEL--------------KKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEA 398
Query: 294 DKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAAN 353
DK+ D F Q IL P + M SAT P +V +AQ+ + +P+ V +G +
Sbjct: 399 DKMLDMGFEPQIMKILLDVR-PDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVA 457
Query: 354 INIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVI 413
++ +Q + EE K ++ + VI+F+ A L +L+ ++V+ +
Sbjct: 458 VSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESL 517
Query: 414 HAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXX 473
H +R Q R+K +E FK+G + LI TD+ +RG+D V V N+D PR+ + YVH
Sbjct: 518 HGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGR 577
Query: 474 XXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGH 533
+IT T+ D +IN+++++ + E + +S E+ + K
Sbjct: 578 TGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEEL-----VSMAERFEAHQRKRE 632
Query: 534 VERK 537
+ERK
Sbjct: 633 MERK 636
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 181 bits (459), Expect = 3e-45
Identities = 120/414 (28%), Positives = 212/414 (50%), Gaps = 20/414 (4%)
Query: 101 KIITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQ 160
K+ +KQ L +RK + V+G+ +P PI +F+D+ +F + +L+ L E +PTPIQ
Sbjct: 119 KMSSKQRDL-IRKQWHIIVNGDDIPPPIKNFKDM----KFPRPVLDTLKEKGIVQPTPIQ 173
Query: 161 SESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV------GLKGLIISPTKE 214
+ +P++L RDMI A TGSGKTL F++P++ + ++ + G GLI+ P++E
Sbjct: 174 VQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRE 233
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITV 274
LA Q + + + PL+ V+ + I+++TP RL +
Sbjct: 234 LARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH-IVVATPGRLKDM 292
Query: 275 VQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIA 334
+ ++ ++L ++L DEAD+L D F + ++ + +FSAT+P+ ++ A
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQR-QTLLFSATMPTKIQIFA 351
Query: 335 QTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESIT 394
++ + P+ V +G AAN+++ Q++ + +E K++ + + + + PPV+IF E+
Sbjct: 352 RSALVKPVTVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKTS--PPVLIFCENKA 408
Query: 395 RAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNL 454
+ LL + IH + Q R+ I FK+G L+ TDV ++G+DF +
Sbjct: 409 DVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 468
Query: 455 VINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDS----LAIKPIINVMKQ 504
VINYD+P + YVH A TF K S L +K ++ KQ
Sbjct: 469 VINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQ 522
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 179 bits (454), Expect = 1e-44
Identities = 127/425 (29%), Positives = 211/425 (48%), Gaps = 35/425 (8%)
Query: 110 KLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH 169
+ RK + +SG+ +P PI +F++ F +LN + F +PT IQ + P+ L
Sbjct: 94 QFRKENEMTISGHDIPKPITTFDEA----GFPDYVLNEVKAEGFDKPTGIQCQGWPMALS 149
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQIFIECSKL 226
RDM+ A TGSGKTL++ +P + I G L+++PT+ELA QI ECSK
Sbjct: 150 GRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKF 209
Query: 227 ANK-------IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA 279
+ +Y + Q+ +I+I+TP RLI +++
Sbjct: 210 GHSSRIRNTCVYGGVPKSQQIRDLSRGS--------------EIVIATPGRLIDMLEIGK 255
Query: 280 LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMN 339
NL +V +L+ DEAD++ D F Q I+ P + M+SAT P V+++A +N
Sbjct: 256 TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSATWPKEVKQLAADYLN 314
Query: 340 DPIRVIIGHKE-AANINIDQQLVFCGNEEGKLIAIRQLVL---EGEFKPPVIIFLESITR 395
DPI+V +G E +A+ NI Q + + E + + L + E+K +IF +
Sbjct: 315 DPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYK--TLIFASTKRM 372
Query: 396 AKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLV 455
+ L D IH ++ Q +RD +++ F++G ++ TDV ARG+D KG+N V
Sbjct: 373 CDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYV 432
Query: 456 INYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQK 515
INYD+P + + YVH AI+F+T+Q+ +I++M+++ + + K
Sbjct: 433 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLK 492
Query: 516 ISSMS 520
S
Sbjct: 493 YDRRS 497
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 179 bits (453), Expect = 1e-44
Identities = 119/417 (28%), Positives = 212/417 (50%), Gaps = 31/417 (7%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
+G++ P I +F D+ + ++ N+ +T PTP+Q +IPI+ +RD++ACA T
Sbjct: 169 TGSNCPPHIENFSDI----DMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQT 224
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKG----------------LIISPTKELANQIFIEC 223
GSGKT AFL+P+L QI D LK L+++PT+ELA QI+ E
Sbjct: 225 GSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 284
Query: 224 SKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLG 283
K + Y + RP V E ++++TP RL+ +++ + L
Sbjct: 285 RKFS---YRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLD 337
Query: 284 KVKHLIFDEADKLFDKTFVEQTDDILSSCTDPH--LRKTM-FSATIPSNVEEIAQTIMND 340
K+L+ DEAD++ D F Q I+ T P +R TM FSAT P ++ +A+ +++
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 397
Query: 341 PIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
I + +G + + NI Q++V+ + + + + L G ++F+E+ A +L
Sbjct: 398 YIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGS-DSLTLVFVETKKGADSLE 456
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
L ++ IH +R+Q R++ + +F+SG L+ T V ARG+D V VIN+D+
Sbjct: 457 DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDL 516
Query: 461 PRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
P + YVH A +F+ +++ K +++++ ++ EV W++ ++
Sbjct: 517 PSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 573
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 178 bits (452), Expect = 2e-44
Identities = 129/429 (30%), Positives = 205/429 (47%), Gaps = 35/429 (8%)
Query: 124 VPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGK 183
+P P F+D FQ LL ++I +PTPIQS++ PI+L D+I A TG+GK
Sbjct: 216 IPKPTCRFKDA---FQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGK 272
Query: 184 TLAFLIP----LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANK------IYLD 233
TL++L+P L Q I+ + G L+++PT+ELA + ECSK + K IY
Sbjct: 273 TLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGG 332
Query: 234 KKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEA 293
+ R Q+ DIII+TP RL + ++NL + +L+ DEA
Sbjct: 333 RNRNGQIEDISKGV--------------DIIIATPGRLNDLQMNNSVNLRSITYLVIDEA 378
Query: 294 DKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAAN 353
DK+ D F Q IL P + M SAT P V ++A + + DP+ V +G+
Sbjct: 379 DKMLDMEFEPQIRKILLDVR-PDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVA 437
Query: 354 INIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVI 413
+N +Q + E+ K ++ V VI+F+ A L + ++ + +
Sbjct: 438 VNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESL 497
Query: 414 HAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXX 473
H Q +++ +E FKSG++ LI TD+++RG+D V V NYD PR+ YVH
Sbjct: 498 HGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGY 557
Query: 474 XXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK-------REKES 526
++T T++DS +I ++ ++ V E + ++ K RE S
Sbjct: 558 IGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRS 617
Query: 527 LKKGKGHVE 535
K G+ E
Sbjct: 618 RKPGQRRKE 626
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 177 bits (450), Expect = 3e-44
Identities = 124/420 (29%), Positives = 213/420 (50%), Gaps = 32/420 (7%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
+G +VP I SF+D+ Q + + NN+ + +PTP+Q +IPI+++ RD++ACA T
Sbjct: 286 TGQNVPPNITSFDDV----QLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQT 341
Query: 180 GSGKTLAFLIPLLQQIIN-------------DKTTVGLKGLIISPTKELANQIFIECSKL 226
GSGKT AFL+P+L Q+ + GL+++PT+ELA QIF E K
Sbjct: 342 GSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKF 401
Query: 227 ANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVK 286
A Y + RP + + +I++TP RL ++ + L ++
Sbjct: 402 A---YRSRMRPAVLYGGNNTSEQMREL----DRGCHLIVATPGRLEDMITRGKVGLENIR 454
Query: 287 HLIFDEADKLFDKTFVEQTDDILSSCTDPHL--RKT-MFSATIPSNVEEIAQTIMNDPIR 343
L+ DEAD++ D F Q I+ P R+T MFSAT P ++E+A +++ I
Sbjct: 455 FLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIF 514
Query: 344 VIIGHKEAANINIDQQL--VFCGNEEGKLIAIRQLVLEG-EFKPP--VIIFLESITRAKA 398
+ +G + + NI Q + V+ ++ L+ + + +G E+ +IF+E+ A +
Sbjct: 515 LAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADS 574
Query: 399 LFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINY 458
L L V IH +RTQ +R++ + F+SGD L+ T V ARG+D V VIN+
Sbjct: 575 LEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINF 634
Query: 459 DVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
D+P + YVH A +F+ +++ ++ ++ ++ E+ +M+ +SS
Sbjct: 635 DLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMSS 694
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 177 bits (448), Expect = 5e-44
Identities = 129/411 (31%), Positives = 201/411 (48%), Gaps = 20/411 (4%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHER 171
RK ++ +G ++P P +FE +L L+ F PTPIQ+++ PI L R
Sbjct: 418 RKQHEVTTTGENIPAPYITFESS----GLPPEILRELLSAGFPSPTPIQAQTWPIALQSR 473
Query: 172 DMIACAPTGSGKTLAFLIP---LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLAN 228
D++A A TGSGKTL +LIP LL+ ND G LI++PT+ELA QI E +
Sbjct: 474 DIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRN-GPTVLILAPTRELATQIQDEALRFGR 532
Query: 229 KIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHL 288
+ E DI+++TP RL +++ + ++ +V L
Sbjct: 533 SSRIS-------CTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLL 585
Query: 289 IFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGH 348
+ DEAD++ D F Q I++ P + M++AT P V +IA ++ +P++V IG
Sbjct: 586 VLDEADRMLDMGFEPQIRKIVNEIP-PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGR 644
Query: 349 KE--AANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYD 406
+ AAN I Q + E K + Q++ E VIIF + L +
Sbjct: 645 VDELAANKAITQYVEVVPQME-KERRLEQILRSQERGSKVIIFCSTKRLCDHLARSV-GR 702
Query: 407 KLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQA 466
VIH ++TQ +RD ++ +F+SG LI TDV ARG+D K + +VINYD P +
Sbjct: 703 HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED 762
Query: 467 YVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
YVH A TF+T+QD +I V++ + +V ++ I+
Sbjct: 763 YVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 176 bits (447), Expect = 7e-44
Identities = 119/413 (28%), Positives = 220/413 (52%), Gaps = 29/413 (7%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
VSG+ P I +FE+ + L NN+ + +T+ TP+Q SIPI+L RD++ACA
Sbjct: 278 VSGHDAPPAILTFEEA----NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 333
Query: 179 TGSGKTLAFLIPLLQQIINDKTTVGL-------KGLIISPTKELANQIFIECSKLANKIY 231
TGSGKT AFL+P+L +++D T + +I++PT+EL NQI++E K +
Sbjct: 334 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC 393
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
+ V ++ +I+ +TP RL+ ++ +E + L ++K+L+ D
Sbjct: 394 VRA-----VVIYGGTQLGHSIRQIVQG--CNILCATPGRLMDIIGKEKIGLKQIKYLVLD 446
Query: 292 EADKLFDKTFVEQTDDILSSCTDP--HLRKT-MFSATIPSNVEEIA-QTIMNDPIRVIIG 347
EAD++ D F + ++S P R+T MFSAT P ++ +A + + ++ + V +G
Sbjct: 447 EADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVG 506
Query: 348 HKEAANINIDQQLVFCG--NEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLY 405
A ++ Q ++ G ++ KL+ I + + + ++F+E+ +A + L
Sbjct: 507 QVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDER----TMVFVETKKKADFIATFLCQ 562
Query: 406 DKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQ 465
+K++ IH +R Q +R++ + F+ G L+ T V ARG+D + V VIN+D+P +
Sbjct: 563 EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 622
Query: 466 AYVHXXXXXXXXXXXXKAITFY-TKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
YVH +AI+F+ + D+ +P++ V+ + +V W+++I+
Sbjct: 623 EYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 675
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 176 bits (447), Expect = 7e-44
Identities = 129/442 (29%), Positives = 216/442 (48%), Gaps = 36/442 (8%)
Query: 104 TKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSES 163
T Q+ R+S + V G++ P P+ +F + F +++ + NFTEPT IQ++
Sbjct: 69 TAQEVETYRRSKEITVRGHNCPKPVLNFYEA----NFPANVMDVIARQNFTEPTAIQAQG 124
Query: 164 IPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQI- 219
P+ L DM+ A TGSGKTL++L+P + I + G L+++PT+ELA Q+
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 184
Query: 220 ------FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLIT 273
C + IY + Q+ E +I I+TP RLI
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDL--------------ERGVEICIATPGRLID 230
Query: 274 VVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEI 333
++ NL + +L+ DEAD++ D F Q I+ P + M+SAT P V ++
Sbjct: 231 FLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSATWPKEVRQL 289
Query: 334 AQTIMNDPIRVIIGHKE-AANINIDQQLVFCGNEEG--KLIAIRQLVLEGEFKPPVIIFL 390
A+ + D I + IG E +AN NI Q + C + E KLI + + ++ E + I+F+
Sbjct: 290 AEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS-EKENKTIVFV 348
Query: 391 ESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFK 450
E+ R L ++ D IH +++Q +RD ++ FK G LI TDV +RG+D +
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 451 GVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVS 510
V VINYD P S++ Y+H A TF+T + + +I+V++++ ++
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN 468
Query: 511 EWMQKISSMSKREKESLKKGKG 532
K+ + + +G+G
Sbjct: 469 ---PKLLQLVEDRGSGRSRGRG 487
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 176 bits (447), Expect = 7e-44
Identities = 123/403 (30%), Positives = 202/403 (49%), Gaps = 23/403 (5%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
V+G+ VP PI F T +++N+ ++ + PTPIQ SIP++ RD++ACA
Sbjct: 235 VTGSDVPQPIQHF----TSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQ 290
Query: 179 TGSGKTLAFLIPLLQQIINDKTTVGL---KGLIISPTKELANQIFIECSKLANKIYLDKK 235
TGSGKT AFL+P+L +++ D + L + +I+SPT+ELA QIF E K A + YL
Sbjct: 291 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL--- 347
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADK 295
++ I+ + ++I+TP RL+ V + + ++ DEAD+
Sbjct: 348 ---KIGIVYGGTSFRHQNECITRGCH-VVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 403
Query: 296 LFDKTFVEQTDDILSSCT-DPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANI 354
+ D F E I++ T P + MFSAT P ++ +A + + + V IG A
Sbjct: 404 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACS 463
Query: 355 NIDQQLVFCGN--EEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDV 412
++ Q + + KLI I +G I+F+E+ A L L +
Sbjct: 464 DVKQTIYEVNKYAKRSKLIEILSEQADG-----TIVFVETKRGADFLASFLSEKEFPTTS 518
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXX 472
IH +R Q QR++ + FK+G + LI T V +RG+D K + VINYD+P YVH
Sbjct: 519 IHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIG 578
Query: 473 XXXXXXXXXKAITFYTKQDSLAI-KPIINVMKQSGCEVSEWMQ 514
+A +F+ + AI ++ +++ SG V ++++
Sbjct: 579 RTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 621
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 176 bits (446), Expect = 9e-44
Identities = 116/386 (30%), Positives = 191/386 (49%), Gaps = 15/386 (3%)
Query: 110 KLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH 169
++RK Y V G+ +P PI SF+++ +F +L L + PTPIQ + IP +L
Sbjct: 162 RVRKKYHILVEGDGIPPPIKSFKEM----KFPAAILRGLKKKGIHHPTPIQIQGIPTILS 217
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV------GLKGLIISPTKELANQIFIEC 223
RDMI A TGSGKTL F +P++ + + + G GLII P++ELA Q
Sbjct: 218 GRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIL 277
Query: 224 SKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLG 283
+ D L+ A I + ++++TP RL+ ++Q++ ++L
Sbjct: 278 EYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH-MMVATPGRLMDLLQKKMVSLD 336
Query: 284 KVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIR 343
++L DEAD++ D F I S + +FSAT+P ++ A++ + P+
Sbjct: 337 ICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVT 395
Query: 344 VIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHEL 403
+ +G AA++++ Q++ + EE K++ + + + + PPV+IF E A+ L
Sbjct: 396 INVGRAGAASLDVIQEVEYV-KEEAKMVYLLECLQKTP--PPVLIFAEKKADVDAIHEYL 452
Query: 404 LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
L + IH + Q +R K IE F+ G L+ TDV ++G+DF + VINYD+P
Sbjct: 453 LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE 512
Query: 464 AQAYVHXXXXXXXXXXXXKAITFYTK 489
+ YVH A TF K
Sbjct: 513 IENYVHRIGRTGRSGNTGIATTFINK 538
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 176 bits (446), Expect = 9e-44
Identities = 118/417 (28%), Positives = 207/417 (49%), Gaps = 15/417 (3%)
Query: 107 DALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPI 166
D ++L+ + V G P P+ SF F FDK L+ + ++ + +PTPIQ+ +IP
Sbjct: 243 DVIRLQNTMNLRVGGLKPPRPVCSF----AHFSFDKLLMEAIRKSEYEQPTPIQAMAIPS 298
Query: 167 LLHERDMIACAPTGSGKTLAFLIPLLQQIIND---KTTVGLKGLIISPTKELANQIFIEC 223
L RD++ A TGSGKT A+L P + I++ K G +I+ PT+ELA Q+F E
Sbjct: 299 ALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEA 358
Query: 224 SKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLG 283
K K+Y + + + ++++ TP R+I +V+ A N
Sbjct: 359 KKFC-KVY-----NINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFL 412
Query: 284 KVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIR 343
+ L+FDEAD++FD F Q I S P + MFSAT VE +A+ + DP+R
Sbjct: 413 RTTFLVFDEADRMFDMGFEAQVKSI-SDHVRPDRQCLMFSATFKQKVERLARDALVDPVR 471
Query: 344 VIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHEL 403
++ G AN +I+Q++ N++ KL + + ++E V+IF+ ++ + +L
Sbjct: 472 IVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKL 531
Query: 404 LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
++ ++H + Q +R++ + +F+ L+ TDV ARG+D + VIN+D+ R
Sbjct: 532 KMKDFDIVLLHGDMLQAERNENLLKFRKKS-QILVATDVAARGLDISEIRTVINFDMARD 590
Query: 464 AQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMS 520
+VH A T T++D + ++ ++ EV + + ++ S
Sbjct: 591 IDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKS 647
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 176 bits (445), Expect = 1e-43
Identities = 125/417 (29%), Positives = 209/417 (49%), Gaps = 23/417 (5%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLI-ENNFTEPTPIQSESIPILLHE 170
RK + G+ +P PIGSF ++ +F K LL + + PT IQ + IP+ L
Sbjct: 172 RKRLGISCEGDHIPPPIGSFLEM----KFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSG 227
Query: 171 RDMIACAPTGSGKTLAFLIPLLQQIINDKTTV------GLKGLIISPTKELANQIF---I 221
RDMI A TGSGKT+ F++PL+ + + + G GLII P++ELA QIF I
Sbjct: 228 RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLII 287
Query: 222 ECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALN 281
E K L + R A D I+++TP RL ++ ++ +N
Sbjct: 288 EMFDALGKAGLPEMR----AGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIIN 343
Query: 282 LGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDP 341
L ++L+ DEAD++ D F ++ I + +FSAT+P ++ A++ + P
Sbjct: 344 LEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQR-QTLLFSATMPRKIQFFAKSALVKP 402
Query: 342 IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFH 401
I V +G AA++N+ Q+L F E KL+ + + + + P V+IF E ++
Sbjct: 403 IVVNVGRAGAASLNVLQELEFV-RSENKLVRVLECLQKTS--PKVLIFAEKKVDVDNIYE 459
Query: 402 ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
LL + V IH + Q R IE F+ + L+ TDV ++G+DF+G+ VIN+D+P
Sbjct: 460 YLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMP 519
Query: 462 RSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI-KPIINVMKQSGCEVSEWMQKIS 517
+ YVH A TF K+ +++ + ++ ++G E+ E+++ ++
Sbjct: 520 EDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKMLA 576
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 176 bits (445), Expect = 1e-43
Identities = 122/418 (29%), Positives = 214/418 (51%), Gaps = 29/418 (6%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
SG++VP P+ +F ++ + L N+ + +PTP+Q +IPILL RD++ACA T
Sbjct: 150 SGDNVPPPVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQT 205
Query: 180 GSGKTLAFLIPLLQQIINDK--------TTVGLKGLIISPTKELANQIFIECSKLANKIY 231
GSGKT AF P++ I+ D+ TV +I+SPT+ELA+QI E K + +
Sbjct: 206 GSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQT- 264
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
++V + E DI+++TP RL +++ +++ ++ L D
Sbjct: 265 -----GVKVVVAYGGTPINQQLREL-ERGVDILVATPGRLNDLLERARVSMQMIRFLALD 318
Query: 292 EADKLFDKTFVEQTDDILSSCTDPH--LRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGH 348
EAD++ D F Q I+ P +R+T+ FSAT P ++ +A + + I + +G
Sbjct: 319 EADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGR 378
Query: 349 KEAANINIDQQLVFCGNEEGK------LIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
++ I Q++ F + + + L A R+ ++G+ + ++F+E+ A +L +
Sbjct: 379 VGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGK-QALTLVFVETKRGADSLENW 437
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L + IH +RTQ +R+ ++ FKSG L+ TDV ARG+D V V+N+D+P
Sbjct: 438 LCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPN 497
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMS 520
YVH A F+ ++ +P+ +M+++ EV EW+ + +S S
Sbjct: 498 DIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRS 555
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 174 bits (441), Expect = 3e-43
Identities = 126/405 (31%), Positives = 199/405 (49%), Gaps = 22/405 (5%)
Query: 130 SFEDLITRFQFDKRLLNNLIEN---NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
S E+L+ QFD+ ++ + N+ EPTPIQ+ + P LL RD++ A TGSGKT+A
Sbjct: 159 SSENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVA 218
Query: 187 FLIPLLQQI--INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXX 244
F IP LQ + ++D +V + L++SPT+ELA Q + + L + +
Sbjct: 219 FGIPALQYLNGLSDNKSVP-RVLVVSPTRELAIQTYENLNSLI--------QGTNLKAVV 269
Query: 245 XXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQ 304
+ +II TP RL+ ++ + +++ +V +L+ DEAD++ D F +
Sbjct: 270 VYGGAPKSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQD 329
Query: 305 TDDILSSCTDP----HLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKE-AANINIDQQ 359
+I+S DP + FSAT P +V +A T + DP+++ IG E AA+ NI Q
Sbjct: 330 IRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQI 389
Query: 360 LVFCGNEEGKLIAIRQLV---LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAE 416
+ + K + L+ L K I+ + A L K NV IH +
Sbjct: 390 VEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGD 449
Query: 417 RTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXX 476
+Q R + + FKSG L+ TDV ARG+D V LVIN P + + YVH
Sbjct: 450 MSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGR 509
Query: 477 XXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK 521
AITF+T QD ++NV++Q+ ++ E + K + K
Sbjct: 510 ANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVK 554
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 174 bits (441), Expect = 3e-43
Identities = 130/424 (30%), Positives = 197/424 (45%), Gaps = 49/424 (11%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T +D R+ Y G +P PI S++D +L + + + EPTPIQ +
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDS----SLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN-------DKTTVGLKGLIISPTKEL 215
+IPI L RD+I A TGSGKT AFLIPLL I +++ G +I++PT+EL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 216 ANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV 275
A QI E K + + R + V + E I+I+TP RLI V+
Sbjct: 481 AQQIEEETIKFGKPLGI---RTVAVIGGISREDQGFRLRMGCE----IVIATPGRLIDVL 533
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS------------SCTDP-------- 315
+ L L + +++ DEAD++ D F IL DP
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 593
Query: 316 -----HLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG-- 368
+ + MF+AT+P VE +A++ + P V IG + ++Q++ E
Sbjct: 594 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 653
Query: 369 KLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIER 428
KL+AI LE F PP+IIF+ L L N +H + Q QR+ +
Sbjct: 654 KLLAI----LEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSN 709
Query: 429 FKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYT 488
K+G L+ TDV RG+D + V++V+NYD+ ++ + Y+H AITF T
Sbjct: 710 LKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
Query: 489 KQDS 492
K+DS
Sbjct: 770 KEDS 773
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 174 bits (441), Expect = 3e-43
Identities = 130/424 (30%), Positives = 197/424 (45%), Gaps = 49/424 (11%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T +D R+ Y G +P PI S++D +L + + + EPTPIQ +
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDS----SLPPHILEVIDKCGYKEPTPIQRQ 420
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN-------DKTTVGLKGLIISPTKEL 215
+IPI L RD+I A TGSGKT AFLIPLL I +++ G +I++PT+EL
Sbjct: 421 AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 216 ANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV 275
A QI E K + + R + V + E I+I+TP RLI V+
Sbjct: 481 AQQIEEETIKFGKPLGI---RTVAVIGGISREDQGFRLRMGCE----IVIATPGRLIDVL 533
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS------------SCTDP-------- 315
+ L L + +++ DEAD++ D F IL DP
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFE 593
Query: 316 -----HLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG-- 368
+ + MF+AT+P VE +A++ + P V IG + ++Q++ E
Sbjct: 594 SGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRK 653
Query: 369 KLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIER 428
KL+AI LE F PP+IIF+ L L N +H + Q QR+ +
Sbjct: 654 KLLAI----LEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSN 709
Query: 429 FKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYT 488
K+G L+ TDV RG+D + V++V+NYD+ ++ + Y+H AITF T
Sbjct: 710 LKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
Query: 489 KQDS 492
K+DS
Sbjct: 770 KEDS 773
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 173 bits (439), Expect = 6e-43
Identities = 121/414 (29%), Positives = 204/414 (49%), Gaps = 20/414 (4%)
Query: 101 KIITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQ 160
K+ TKQ L +RK + V+G +P PI +F D+ +F LL L + PTPIQ
Sbjct: 70 KMSTKQMDL-IRKQWHITVNGEDIPPPIKNFMDM----KFPSPLLRMLKDKGIMHPTPIQ 124
Query: 161 SESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV------GLKGLIISPTKE 214
+ +P++L RDMI A TGSGKTL F++P++ + ++ + G L+I P++E
Sbjct: 125 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRE 184
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITV 274
LA Q + + + D L+ V+ + + I+++TP RL +
Sbjct: 185 LAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH-IVVATPGRLKDI 243
Query: 275 VQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIA 334
+ ++ ++L + L DEAD+L D F + + + +FSAT+P+ ++ A
Sbjct: 244 LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQR-QTLLFSATMPAKIQIFA 302
Query: 335 QTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESIT 394
+ + P+ V +G AAN+++ Q++ + +E K++ + + + + PPV+IF E+
Sbjct: 303 TSALVKPVTVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQKTT--PPVLIFCENKA 359
Query: 395 RAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNL 454
+ LL + IH + Q RD I FK+G L+ TDV ++G+DF +
Sbjct: 360 DVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQH 419
Query: 455 VINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDS----LAIKPIINVMKQ 504
VINYD+P + YVH A TF K S L +K ++ KQ
Sbjct: 420 VINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQ 473
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 173 bits (438), Expect = 7e-43
Identities = 109/406 (26%), Positives = 202/406 (48%), Gaps = 35/406 (8%)
Query: 111 LRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHE 170
L++ Y ++ G+ +P P+ ++E+ +L L + N+ EP+ IQ +IP+LL
Sbjct: 231 LKEDYNISIKGDDLPNPLRNWEEA----GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR 286
Query: 171 RDMIACAPTGSGKTLAFLIPL------LQQIINDKTTVGLKGLIISPTKELANQIFIECS 224
+D+I A TGSGKT AF+IPL L + +G ++++PT+ELA QI +E +
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 225 KLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK 284
K A + + +S+ + I+++TP RL+ ++ L +
Sbjct: 347 KFAEPL------GFRCVSVVGGHAFEEQSFQMSQGAH-IVVATPGRLLDCLERRLFVLSQ 399
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL-----------------RKT-MFSATI 326
+++ DEAD++ D F + + ILSS + R+T MFSAT+
Sbjct: 400 CTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATL 459
Query: 327 PSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPV 386
P V +A++ + +P+ + IG+ A ++Q++ ++ K + +++ F PP+
Sbjct: 460 PPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPI 519
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
IIF+ +A+ +L + +H ++Q QR++ IE+ ++ L+ TD+ RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 447 VDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDS 492
+D V+LV+NY++ +S + Y H AITF +D+
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDT 625
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 172 bits (437), Expect = 1e-42
Identities = 125/425 (29%), Positives = 200/425 (46%), Gaps = 44/425 (10%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHER 171
R+ + ++ G VP P+ ++E+ F + + E + EPTPIQ ++IPI L R
Sbjct: 284 REDFNISIKGGRVPRPLRNWEEA----GFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR 339
Query: 172 DMIACAPTGSGKTLAFLIPLLQQIIN-------DKTTVGLKGLIISPTKELANQIFIECS 224
D+I A TGSGKT AFL+PLL I + + +G +I++PT+ELA QI E +
Sbjct: 340 DVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETN 399
Query: 225 KLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK 284
K + + + A +++I+TP RL+ V++ L L +
Sbjct: 400 KFGKLLGIKTVSVIGGASREDQGMKLRMGV-------EVVIATPGRLLDVLENRYLLLNQ 452
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK------------------------T 320
++I DEAD++ D F +L D +++K
Sbjct: 453 CTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTV 512
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEG 380
MF+AT+ S +E +A+ + P V IG ++Q +V+ E+ K + + VLE
Sbjct: 513 MFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQ-VVYMVPEDRKRKKLVE-VLES 570
Query: 381 EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICT 440
+F+PP+IIF+ A L L V+H + Q QR+ ++ K G L+ T
Sbjct: 571 QFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVAT 630
Query: 441 DVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIIN 500
DV RG+D K V+LV+NYD+ +S + Y H KAITF T D+ +
Sbjct: 631 DVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
Query: 501 VMKQS 505
V+ +S
Sbjct: 691 VLVES 695
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 172 bits (437), Expect = 1e-42
Identities = 125/425 (29%), Positives = 200/425 (46%), Gaps = 44/425 (10%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHER 171
R+ + ++ G VP P+ ++E+ F + + E + EPTPIQ ++IPI L R
Sbjct: 284 REDFNISIKGGRVPRPLRNWEEA----GFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNR 339
Query: 172 DMIACAPTGSGKTLAFLIPLLQQIIN-------DKTTVGLKGLIISPTKELANQIFIECS 224
D+I A TGSGKT AFL+PLL I + + +G +I++PT+ELA QI E +
Sbjct: 340 DVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETN 399
Query: 225 KLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK 284
K + + + A +++I+TP RL+ V++ L L +
Sbjct: 400 KFGKLLGIKTVSVIGGASREDQGMKLRMGV-------EVVIATPGRLLDVLENRYLLLNQ 452
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK------------------------T 320
++I DEAD++ D F +L D +++K
Sbjct: 453 CTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTV 512
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEG 380
MF+AT+ S +E +A+ + P V IG ++Q +V+ E+ K + + VLE
Sbjct: 513 MFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQ-VVYMVPEDRKRKKLVE-VLES 570
Query: 381 EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICT 440
+F+PP+IIF+ A L L V+H + Q QR+ ++ K G L+ T
Sbjct: 571 QFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVAT 630
Query: 441 DVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIIN 500
DV RG+D K V+LV+NYD+ +S + Y H KAITF T D+ +
Sbjct: 631 DVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
Query: 501 VMKQS 505
V+ +S
Sbjct: 691 VLVES 695
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 171 bits (434), Expect = 2e-42
Identities = 129/441 (29%), Positives = 213/441 (48%), Gaps = 26/441 (5%)
Query: 101 KIITKQDALKLRKSYQG-NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPI 159
K ++ + +LR S G + G P P+ S+ Q ++N+L + +PT I
Sbjct: 389 KNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS-VINSL---GYEKPTSI 444
Query: 160 QSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND---KTTVGLKGLIISPTKELA 216
Q+++IP + RD+I A TGSGKT+AFL+P+ + I + KT G +I++PT+ELA
Sbjct: 445 QAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELA 504
Query: 217 NQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQ 276
QIF EC + + A + +I++ TP R+I V+
Sbjct: 505 VQIFRECKPFLKLLNIR-------ACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLS 557
Query: 277 EEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEI 333
A NL + +L+ DEAD++FD F Q I+++ P + +FSAT P +E +
Sbjct: 558 ANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR-PDRQTVLFSATFPRAMEAL 616
Query: 334 AQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLE---GEFKPPVIIFL 390
A+ ++ P+ + +G + ++Q +V EE K + +L+ E + ++F+
Sbjct: 617 ARKVLKKPVEITVGGRSVVASEVEQ-IVEVRPEESKFSRLLELLGELYNNQLDVRTLVFV 675
Query: 391 ESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFK 450
+ A AL +L+ + IH + Q RD I +K+G LI T V+ARG+D K
Sbjct: 676 DRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVK 735
Query: 451 GVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVS 510
+ LV+NYD P + YVH A+TF T + I +K S V
Sbjct: 736 SLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVP 795
Query: 511 EWMQKISSMSKREKESLKKGK 531
+ +Q ++S + E +K GK
Sbjct: 796 KELQTLAS---QFLEKVKAGK 813
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 171 bits (434), Expect = 2e-42
Identities = 119/372 (31%), Positives = 196/372 (51%), Gaps = 18/372 (4%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP---LLQQIINDKTTVGLKGLII 209
F+ P+PIQ++S PI + RD++A A TGSGKTL +LIP LQ+I ND + +G L++
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHND-SRMGPTILVL 307
Query: 210 SPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
SPT+ELA QI +E K K + A I E DI+++TP
Sbjct: 308 SPTRELATQIQVEALKFG------KSSKISCACLYGGAPKGPQLKEI-ERGVDIVVATPG 360
Query: 270 RLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPS 328
RL +++ + ++L +V +L+ DEAD++ D F Q I++ P R+T M++AT P
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV--PTKRQTLMYTATWPK 418
Query: 329 NVEEIAQTIMNDPIRVIIGHKE--AANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPV 386
V +IA ++ +P +V IG+ + AN +I Q + E K + Q++ E +
Sbjct: 419 EVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPME-KHSRLEQILRSQEPGSKI 477
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
IIF + L L IH +++Q +RD ++ +F+SG L+ TDV ARG
Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536
Query: 447 VDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSG 506
+D K + +V+NYD P + YVH A TF+ QD+ +I +++ +
Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGAN 596
Query: 507 CEVSEWMQKISS 518
+V ++++++
Sbjct: 597 QKVPPQVREMAT 608
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 171 bits (434), Expect = 2e-42
Identities = 121/416 (29%), Positives = 212/416 (50%), Gaps = 29/416 (6%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
SG++VP P+ +F ++ + L N+ + +PTP+Q +IPIL RD++ACA T
Sbjct: 137 SGDNVPPPVNTFAEI----DLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQT 192
Query: 180 GSGKTLAFLIPLLQQIINDKTTV---GLKGL-----IISPTKELANQIFIECSKLANKIY 231
GSGKT AF P++ I+ D+ G++G+ I+SPT+ELA QI E K + +
Sbjct: 193 GSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQT- 251
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
++V + E DI+++TP RL +++ ++L V+ L D
Sbjct: 252 -----GVKVVVAYGGTPVNQQIREL-ERGVDILVATPGRLNDLLERGRVSLQMVRFLALD 305
Query: 292 EADKLFDKTFVEQTDDILSSCT--DPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGH 348
EAD++ D F Q I+ P +R+TM FSAT P ++ +A +++ I + +G
Sbjct: 306 EADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGR 365
Query: 349 KEAANINIDQQLVFCGNEEGK------LIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
++ I Q++ F + + + L A R+ +G+ + ++F+E+ A +L +
Sbjct: 366 VGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGK-QALTLVFVETKKGADSLENW 424
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L + IH +R+Q +R+ + FK+G L+ TDV ARG+D V V+N+D+P
Sbjct: 425 LCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPN 484
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
YVH A F+ ++ KP+ +M+++ EV +W+ + +S
Sbjct: 485 DIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYAS 540
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 170 bits (431), Expect = 5e-42
Identities = 130/445 (29%), Positives = 222/445 (49%), Gaps = 29/445 (6%)
Query: 103 ITKQDALKLRKSYQG-NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
+TK + R+ V G P PI ++ + + +++N L + +++PT IQ+
Sbjct: 277 MTKAEVKAYREELDSITVKGIDCPKPIKTW----AQCGVNLKMMNVLKKFEYSKPTSIQA 332
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND---KTTVGLKGLIISPTKELANQ 218
++IP ++ RD+I A TGSGKTLAFL+P+ + I++ + G +I++PT+ELA Q
Sbjct: 333 QAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQ 392
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV--- 275
+ E +K A K L+VA + +I++ TP R+I V+
Sbjct: 393 TYKEANKFA------KPLGLKVACTYGGVGISEQIADLKRGA-EIVVCTPGRMIDVLAAN 445
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQ 335
+ NL +V +L+ DEAD++FDK F Q ++++ P + +FSAT P ++E +A+
Sbjct: 446 SGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR-PDKQTVLFSATFPRHMEALAR 504
Query: 336 TIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITR 395
+++ P+ +++G K +I Q V C E K + + +L+ + I+F++ +
Sbjct: 505 KVLDKPVEILVGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYEEGSSIVFVDKQEK 563
Query: 396 AKALFHELLYDKLN-VDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNL 454
A + +L+ N V +H Q RD I FK+G + L+ T V ARG+D K + L
Sbjct: 564 ADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLIL 623
Query: 455 VINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY--TKQDSLAIKPIINVMKQSGCEVSEW 512
V+NYD P + YVH A TF Q+ +A I + +GC+
Sbjct: 624 VVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMA-GEICRAFETAGCKPPAD 682
Query: 513 MQKI-----SSMSKREKESLKKGKG 532
++ + S M+ KE GKG
Sbjct: 683 LKAMFERFKSEMAAEGKEVKLGGKG 707
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 170 bits (431), Expect = 5e-42
Identities = 130/445 (29%), Positives = 222/445 (49%), Gaps = 29/445 (6%)
Query: 103 ITKQDALKLRKSYQG-NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
+TK + R+ V G P PI ++ + + +++N L + +++PT IQ+
Sbjct: 277 MTKAEVKAYREELDSITVKGIDCPKPIKTW----AQCGVNLKMMNVLKKFEYSKPTSIQA 332
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND---KTTVGLKGLIISPTKELANQ 218
++IP ++ RD+I A TGSGKTLAFL+P+ + I++ + G +I++PT+ELA Q
Sbjct: 333 QAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQ 392
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV--- 275
+ E +K A K L+VA + +I++ TP R+I V+
Sbjct: 393 TYKEANKFA------KPLGLKVACTYGGVGISEQIADLKRGA-EIVVCTPGRMIDVLAAN 445
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQ 335
+ NL +V +L+ DEAD++FDK F Q ++++ P + +FSAT P ++E +A+
Sbjct: 446 SGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR-PDKQTVLFSATFPRHMEALAR 504
Query: 336 TIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITR 395
+++ P+ +++G K +I Q V C E K + + +L+ + I+F++ +
Sbjct: 505 KVLDKPVEILVGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYEEGSSIVFVDKQEK 563
Query: 396 AKALFHELLYDKLN-VDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNL 454
A + +L+ N V +H Q RD I FK+G + L+ T V ARG+D K + L
Sbjct: 564 ADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLIL 623
Query: 455 VINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY--TKQDSLAIKPIINVMKQSGCEVSEW 512
V+NYD P + YVH A TF Q+ +A I + +GC+
Sbjct: 624 VVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMA-GEICRAFETAGCKPPAD 682
Query: 513 MQKI-----SSMSKREKESLKKGKG 532
++ + S M+ KE GKG
Sbjct: 683 LKAMFERFKSEMAAEGKEVKLGGKG 707
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 170 bits (430), Expect = 6e-42
Identities = 126/439 (28%), Positives = 208/439 (46%), Gaps = 41/439 (9%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
VSG + P+ F T + LL N+ + +T+PTP+Q SIPI+ RD++ACA
Sbjct: 160 VSGGDIE-PVNEF----TSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
Query: 179 TGSGKTLAFLIPLLQQI---------INDKTTVGLKG-------LIISPTKELANQIFIE 222
TGSGKT FL P+L ++ +G + LI++PT+EL QI E
Sbjct: 215 TGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEE 274
Query: 223 CSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNL 282
K + ++ RP V + D++ +TP RL+ ++ ++L
Sbjct: 275 SRKFCYRSWV---RPCAVYGGADIRAQIRQI----DQGCDLLSATPGRLVDLIDRGRISL 327
Query: 283 GKVKHLIFDEADKLFDKTFVEQTDDILSSC--TDPHLRKT-MFSATIPSNVEEIAQTIMN 339
+K L+ DEAD++ D F Q I+ T R+T MFSAT P +++ +A+ +
Sbjct: 328 ANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
Query: 340 DPIRVIIGHKEAANINIDQQLVFCGNEEGK---LIAIRQLVLEGEFKPPVIIFLESITRA 396
D + + +G + + NI Q++V + E + L + L EG +IF+E+ A
Sbjct: 388 DYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGL----TLIFVETKRMA 443
Query: 397 KALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVI 456
L LL IH +RTQ +R++ +E F+SG ++ T V +RG+D V VI
Sbjct: 444 DTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVI 503
Query: 457 NYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEW---M 513
NYD+P YVH +A+ F+ + + K +I +++++ E + M
Sbjct: 504 NYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAM 563
Query: 514 QKISSMSKREKESLKKGKG 532
+ SS + G+G
Sbjct: 564 ARESSFGGNGRGGRYSGRG 582
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 169 bits (429), Expect = 8e-42
Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 28/410 (6%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
SG VP P+ +F D+ L N+ + PTP+Q +IPILL ERD++ACA T
Sbjct: 142 SGGDVPPPVNTFADI----DLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQT 197
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKG--------LIISPTKELANQIFIECSKLANKIY 231
GSGKT AF P++ I+ D+ +G +I+SPT+ELA QI E K + +
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT- 256
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
++V + E DI+++TP RL +++ +++ ++ L D
Sbjct: 257 -----GVKVVVAYGGTPIHQQLREL-ERGCDILVATPGRLNDLLERARVSMQMIRFLALD 310
Query: 292 EADKLFDKTFVEQTDDILSSCTDPH--LRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGH 348
EAD++ D F Q I+ P +R+TM FSAT PS ++ +A M++ I + +G
Sbjct: 311 EADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR 370
Query: 349 KEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL 408
++ I Q++ F + + + L + E + ++ A L + L ++
Sbjct: 371 VGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQD------KTKRGADTLENWLCMNEF 424
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
IH +RTQ +R+ + FK+G L+ TDV ARG+D V V+N+D+P YV
Sbjct: 425 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 484
Query: 469 HXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISS 518
H A F+ + ++ + + +M+++ EV EW+ + +S
Sbjct: 485 HRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYAS 534
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 168 bits (426), Expect = 2e-41
Identities = 111/352 (31%), Positives = 186/352 (52%), Gaps = 14/352 (3%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
V G V PI FE + L +NL ++ + PTPIQ + IP+ L RD++A A
Sbjct: 193 VQGQEVTRPIIDFEHC----SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASAD 248
Query: 179 TGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPL 238
TGSGKT AFL+P++ + + + T LI++PT+ELA QI + +L + + P
Sbjct: 249 TGSGKTAAFLLPVIMRALFESKTPS--ALILTPTRELAIQIERQAKELMSGL------PR 300
Query: 239 QVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFD 298
+ +II+TP RL+ ++++ ++ L VK ++ DEAD +
Sbjct: 301 MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLK 360
Query: 299 KTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQ 358
F +Q DIL + + + + SATIP+++E++A ++++P+R+I G K N+ Q
Sbjct: 361 MGFQQQVLDILENIPND-CQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419
Query: 359 QLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELL-YDKLNVDVIHAER 417
+++ + K L + FKPPV++F++ A L + L IH+E+
Sbjct: 420 IILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEK 479
Query: 418 TQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+Q++R I++ GD ++ T VL RG+D V LV+N+D+P S YVH
Sbjct: 480 SQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVH 531
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 168 bits (426), Expect = 2e-41
Identities = 129/448 (28%), Positives = 211/448 (46%), Gaps = 23/448 (5%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T + RK+ + V G +VP PI FE+ F ++++L+E F+EPT IQ +
Sbjct: 61 MTPSEVSSFRKTNEMIVKGTNVPHPIQKFEEA----GFSSEVVSSLVEKGFSEPTAIQGQ 116
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQI 219
P+ L RDM+ A TGSGKTL+F++P L + + G L+++PT+EL QI
Sbjct: 117 GWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQI 176
Query: 220 FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEA 279
+ L A + +++I+TP RLI + +
Sbjct: 177 KKVVDEFCGMFNLRSTAVYGGASSQPQIRAL-------HEGAEVVIATPGRLIDLHDQGH 229
Query: 280 LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMN 339
L +V L+ DEAD++ D F Q I+ T+ + + M+SAT P V +A++ MN
Sbjct: 230 APLSRVTFLVLDEADRMLDMGFEPQLRKIIPK-TNANRQTLMWSATWPREVRGLAESYMN 288
Query: 340 DPIRVIIGHKEA-ANINIDQQLVFCGN--EEGKLIAIRQLVLEGEFKPPVIIFLESITRA 396
+ I+V++G++E N I Q + C +E KLI VL+ VI+F
Sbjct: 289 EYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIG----VLDNFKGDKVIVFCNMKRTC 344
Query: 397 KALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVI 456
L + L +H +++Q RDK+++ F+SG LI T+V RG+D V LVI
Sbjct: 345 DDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVI 404
Query: 457 NYDVPRSAQAYVHXXXXXXXXXXXXK-AITFYTKQDSLAIKPIINVMKQSGCEVSEWMQK 515
N+D P S + YVH + TF+T D + +I +++++ V ++
Sbjct: 405 NFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLED 464
Query: 516 ISSMSKREKESLKKGKGHVERKQISTVP 543
+ +S S G+ R + P
Sbjct: 465 MVRVSNDRYGSRSTRHGYDYRGRAGRFP 492
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 168 bits (425), Expect = 2e-41
Identities = 115/422 (27%), Positives = 204/422 (48%), Gaps = 18/422 (4%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
V G + PI SF ++ +F K +LN L PTPIQ + +P +L RD+I A
Sbjct: 167 VEGETPSPPIRSFREM----KFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAF 222
Query: 179 TGSGKTLAFLIPLLQQIINDKTTV------GLKGLIISPTKELANQIFIECSKLANKIYL 232
TGSGKTL F++P++ + + ++ G GLII P++ELA Q + +
Sbjct: 223 TGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQA 282
Query: 233 DKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDE 292
++ VIS + I+++TP RL+ ++ ++ L L ++L DE
Sbjct: 283 CGMPEIRSCLAMGGLPVSEALDVISRGVH-IVVATPGRLMDMLDKKILTLDMCRYLCMDE 341
Query: 293 ADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAA 352
AD++ D F E I S + +FSAT+P ++ A++ + P+ + +G AA
Sbjct: 342 ADRMIDMGFEEDVRTIFSFFKGQR-QTLLFSATMPKKIQNFARSALVKPVTINVGRAGAA 400
Query: 353 NINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDV 412
++N+ QQ+ + +E K++ + + + PPV+IF E + LL +
Sbjct: 401 SMNVTQQVEYV-KQEAKVVYLLDCLQKTA--PPVLIFAEKKQDVDCIHEYLLLKGVEAVA 457
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXX 472
IH + Q +R + ++ ++ G L+ TDV ++G+DF V VINYD+P + YVH
Sbjct: 458 IHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIG 517
Query: 473 XXXXXXXXXKAITFYTK-QDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGK 531
A T K + + + +++ + EV +++ +++ + E + L G
Sbjct: 518 RTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELA--PETEHQHLDLGD 575
Query: 532 GH 533
H
Sbjct: 576 SH 577
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 167 bits (422), Expect = 5e-41
Identities = 118/428 (27%), Positives = 209/428 (48%), Gaps = 35/428 (8%)
Query: 107 DALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPI 166
+ + RK + V G +VP P+ +FE+ F +L + + F PTPIQ ++ P+
Sbjct: 100 EVTEYRKEKEIVVHGLNVPKPVTTFEEA----GFPNYVLKEVKQLGFEAPTPIQQQAWPM 155
Query: 167 LLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQIFIEC 223
+ RDM+ + TGSGKTL++ +P + I G L+++PT+ELA QI EC
Sbjct: 156 AMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQEC 215
Query: 224 SKLANK-------IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQ 276
+K +Y R Q+ +I I+TP RL+ ++
Sbjct: 216 TKFGKSSRIRNTCVYGGVPRGPQIRDLIRGV--------------EICIATPGRLLDMLD 261
Query: 277 EEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQT 336
NL +V +L+ DEAD++ D F Q I+ P + MFSAT P V+ +A+
Sbjct: 262 SNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTVMFSATWPKEVQRLARD 320
Query: 337 IMNDPIRVIIGHKE-AANINIDQQLVFCGNEEGKLIA---IRQLVLEGEFKPPVIIFLES 392
+ND I+V +G + AA+ NI Q + N + + I +++ + + K V+IF +
Sbjct: 321 YLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNK--VLIFTGT 378
Query: 393 ITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGV 452
A + L D IH ++ Q +RD ++ F++G ++ TDV +RG+D KG+
Sbjct: 379 KRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGI 438
Query: 453 NLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEW 512
V NYD P + + YVH A T++T ++ + +++++ ++ ++
Sbjct: 439 THVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPK 498
Query: 513 MQKISSMS 520
+++++ S
Sbjct: 499 LEEMARYS 506
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 167 bits (422), Expect = 5e-41
Identities = 118/420 (28%), Positives = 200/420 (47%), Gaps = 17/420 (4%)
Query: 119 VSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAP 178
+ G+ VP P FE+ F ++N + + F +PT IQ++ PI + RD++ A
Sbjct: 140 IKGDQVPTPSIEFEE----GGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQ 195
Query: 179 TGSGKTLAFLIPLLQQIINDKTTV---GLKGLIISPTKELANQIFIECSKLANKIYLDKK 235
TGSGKTLA+++P + I N G L+++PT+ELA QI + + ++
Sbjct: 196 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT 255
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADK 295
A E +I+I+TP RLI ++ +L + +L+ DEAD+
Sbjct: 256 CIFGGAPKGQQARDL-------ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADR 308
Query: 296 LFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKE-AANI 354
+ D F Q I+ P + M+SAT P V ++A+ +N+ I+V IG +AN
Sbjct: 309 MLDMGFEPQIRKIMQQIR-PDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANH 367
Query: 355 NIDQQLVFCGNEEGKLIAIRQLV-LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVI 413
NI Q + C E + I+ L + E + IIF+E+ R + + I
Sbjct: 368 NILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAI 427
Query: 414 HAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXX 473
H +++Q +RD ++ F++G L+ TDV ARG+D V VINYD P +++ YVH
Sbjct: 428 HGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGR 487
Query: 474 XXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGH 533
A T +T ++ +I V++++ ++ + ++ K G G+
Sbjct: 488 TGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGMGGGY 547
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 166 bits (419), Expect = 1e-40
Identities = 125/398 (31%), Positives = 189/398 (47%), Gaps = 44/398 (11%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T++D R+ Y + G +P PI S+ + F K +++ + + + EPTPIQ +
Sbjct: 368 MTERDWRIFREDYNVTIKGGRIPNPIRSWNES----GFPKEIIDIIDKVGYKEPTPIQRQ 423
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN-------DKTTVGLKGLIISPTKEL 215
+IPI L RD+I A TGSGKTLAFLIPLL I + + G +I++PT+EL
Sbjct: 424 AIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTREL 483
Query: 216 ANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV 275
A QI E +K + + R + V + E I+I+TP RLI V+
Sbjct: 484 AQQIEEETTKFGQPLGI---RTVVVVGGLSREEQGFRLRLGCE----IVIATPGRLIDVL 536
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK---------------- 319
+ L L + +++ DEAD++ D F IL +L+
Sbjct: 537 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFY 596
Query: 320 --------TMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLI 371
MF+AT+P VE +A+T + P V IG +Q+V+ E K
Sbjct: 597 TKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIG-SVGKPTERTEQIVYMMGENDKRK 655
Query: 372 AIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKS 431
+ + +L + PPVIIF+ A L L N +H + Q QR+ + KS
Sbjct: 656 KLME-ILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKS 714
Query: 432 GDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
G L+ TDV RG+D K V+LVINYD+ ++ + Y H
Sbjct: 715 GAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 752
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 166 bits (419), Expect = 1e-40
Identities = 114/419 (27%), Positives = 209/419 (49%), Gaps = 20/419 (4%)
Query: 110 KLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH 169
+ R+ + V G VP PI F ++ ++ + + PT IQ++ PI +
Sbjct: 121 RYREEQEITVRGQ-VPNPIQDFSEV----HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMS 175
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV---GLKGLIISPTKELANQIFIECSKL 226
+ + A TGSGKTL +++P + I N + G L+++PT+ELA QI ++
Sbjct: 176 GSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEF 235
Query: 227 ANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVK 286
+ Y+ A + +I+I+TP RLI + + NL +
Sbjct: 236 GSSSYVRNTCVFGGAPKGGQMRDL-------QRGCEIVIATPGRLIDFLSAGSTNLKRCT 288
Query: 287 HLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVII 346
+L+ DEAD++ D F Q I+S P + M+SAT P V+++A+ + + I++ I
Sbjct: 289 YLVLDEADRMLDMGFEPQIRKIVSQIR-PDRQTLMWSATWPKEVKQLAEDFLGNYIQINI 347
Query: 347 GHKE-AANINIDQQLVFCG--NEEGKLIAIRQLVLEGEFKP-PVIIFLESITRAKALFHE 402
G E +AN NI Q + C ++E KL + + + P +IIF+E+ R L
Sbjct: 348 GSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRF 407
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
+ + IH +++Q +RD ++ F+SG L+ TDV ARG+D G+ VIN+D P+
Sbjct: 408 IRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQ 467
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSK 521
+++ Y+H + F+TK ++ K +++V++++ E++ ++ ++ S+
Sbjct: 468 NSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSR 526
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 165 bits (418), Expect = 2e-40
Identities = 121/412 (29%), Positives = 198/412 (47%), Gaps = 22/412 (5%)
Query: 116 QGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIA 175
Q + G VP P+ F + Q ++ L+ F +PT IQS S PI + RD+I+
Sbjct: 117 QVTLEGRGVPRPVFEFNEAPLPGQ-----IHELLYGKFQKPTVIQSISWPIAMSGRDIIS 171
Query: 176 CAPTGSGKTLAFLIPLLQQIINDKTTVGLKG---LIISPTKELANQIFIECSKLANKIYL 232
A TGSGKTLAF++P L I +G L++ PT+ELA Q+ ++ +
Sbjct: 172 IAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQV--------QEVSI 223
Query: 233 DKKRPLQVAXXXXXXXXXXXXXVISEDK-YDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
D L + ++ DI+++TP RL+ + N+ K +L+ D
Sbjct: 224 DFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLD 283
Query: 292 EADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKE- 350
EAD++ D F Q I+ P + MFSAT P V +A D + +G E
Sbjct: 284 EADRMLDMGFEPQIKKIIGQIR-PDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLEL 342
Query: 351 AANINIDQQLVFCGNEEGKLIAIRQLV--LEGEFKPPVIIFLESITRAKALFHELLYDKL 408
AAN NI Q +V E K + +L+ + + + IIF+E+ +A L + D
Sbjct: 343 AANHNITQ-VVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGW 401
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
IH ++ Q +RD +++ FK+G ++ TDV ARG+D + VINYD P +++ YV
Sbjct: 402 PTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYV 461
Query: 469 HXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMS 520
H A TF+T ++ K ++ V+ ++ V + ++ +++ S
Sbjct: 462 HRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRS 513
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 163 bits (413), Expect = 6e-40
Identities = 120/414 (28%), Positives = 198/414 (46%), Gaps = 24/414 (5%)
Query: 102 IITKQDALKLRKSYQGNVSGNSVPLPIGSFEDL--------ITRFQFDKRLLNNLIENNF 153
I+TK D LK++ + G G FED + LL + F
Sbjct: 182 ILTKADTLKVKDRKKKKKKGQEAG---GFFEDASQYDENLSFQDMNLSRPLLKAITAMGF 238
Query: 154 TEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII-NDKTTVGLKGLIISPT 212
+PTPIQ IP+ L +D+ ACA TG+GKT AF +P+L+++I + + L++ PT
Sbjct: 239 KQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPT 298
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
+EL Q+ +LA + + L V DI+I+TP RLI
Sbjct: 299 RELGIQVHSVTRQLAQ--FCNITTCLAVGGLDVKSQEAALRAAP-----DILIATPGRLI 351
Query: 273 TVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSNV 330
+ + +L ++ LI DEAD++ D+ F EQ +I+ C+ H R+TM FSAT+ V
Sbjct: 352 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS--HHRQTMLFSATMTDEV 409
Query: 331 EEIAQTIMNDPIRVIIGHKEAANINIDQQLV-FCGNEEGKLIAIRQLVLEGEFKPPVIIF 389
+++A + +P+R+ + + Q+ + N EG AI +L F V++F
Sbjct: 410 KDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLF 469
Query: 390 LESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDF 449
++ +A + L L V +H +Q QR + + RFK + L+ TDV ARG+D
Sbjct: 470 TQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI 529
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
+GV VIN+ +P + + YVH ++++ + + +K I+ K
Sbjct: 530 EGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAK 583
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 161 bits (407), Expect = 3e-39
Identities = 117/420 (27%), Positives = 209/420 (48%), Gaps = 24/420 (5%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIEN-NFTEPTPIQS 161
+ ++D L++ Y G +V P+ ++E+L + LL +I+ F PTPIQ
Sbjct: 146 MNERDWRILKEDYAIVTKGGTVENPLRNWEELNI---IPRDLLRVIIQELRFPSPTPIQR 202
Query: 162 ESIPILLHE---RDMIACAPTGSGKTLAFLIPLLQQIIND-------KTTVGLKGLIISP 211
+IP + + RD + A TGSGKTLAF+IP+L ++ K G K LI++P
Sbjct: 203 ITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAP 262
Query: 212 TKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRL 271
T+EL QI E K+ + +V +SE DI+++TP RL
Sbjct: 263 TRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEG-CDILVATPGRL 321
Query: 272 ITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSC-----TDPHLRKTMFSATI 326
I ++ L + +V+ L+ DEADK+ D F +Q +IL+ + + + MF+AT+
Sbjct: 322 IDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATM 381
Query: 327 PSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPV 386
+E+IA M P+ IG + + I Q + + N+E K ++ +V ++ PP+
Sbjct: 382 TPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIV--AKYDPPI 439
Query: 387 IIFLESITRAKALFHELLYD-KLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLAR 445
IIF+ A L + + + V ++H ++Q QR+ ++ F++ + +I T+V AR
Sbjct: 440 IIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAAR 499
Query: 446 GVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYT-KQDSLAIKPIINVMKQ 504
G+D V+LV+N+ + + Y+H A++F + +D I+ + +++
Sbjct: 500 GLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELYKYVRK 559
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 159 bits (403), Expect = 8e-39
Identities = 118/407 (28%), Positives = 196/407 (47%), Gaps = 38/407 (9%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPT 212
F PTPIQ E+IP++L++RD+I A TGSGKT AF +P++Q++ N+ + ++++PT
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSP--FFAVVLAPT 123
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
+ELA QI + + I + + V K +++ TP RL+
Sbjct: 124 RELAYQISEQFEAIGGSIGVR-------SVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 273 TVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSNV 330
++ + +L +K+LI DEAD+L D F D IL PH R+T+ FSAT+ S V
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII--PHERRTLLFSATMTSKV 234
Query: 331 EEIAQTIMNDPIRVIIGHK-EAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIF 389
E++ + ++ P+RV + K + I + L F + + L G +IIF
Sbjct: 235 EKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGN---SIIIF 291
Query: 390 LESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDF 449
++ + L L + +H + +Q R + +FKSG L+ TDV ARG+D
Sbjct: 292 ARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDI 351
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEV 509
V++VINYD+P ++AY+H K+I T+ D ++P + + G ++
Sbjct: 352 PLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYD---LEPFLRIEATIGKKM 408
Query: 510 SEW------------------MQKISSMSKREKESLKKGKGHVERKQ 538
E+ + I M + KGK H +RK+
Sbjct: 409 QEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTKRKR 455
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 159 bits (403), Expect = 8e-39
Identities = 123/400 (30%), Positives = 193/400 (47%), Gaps = 28/400 (7%)
Query: 146 NNLIEN------NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK 199
+NL EN F +P+PIQS + P LL RD+I A TGSGKTLAF IP + ++
Sbjct: 121 SNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKN 180
Query: 200 TTVGLKG-------LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXX 252
+G L++SPT+ELA QI + + + P +
Sbjct: 181 KKIGGGSKKVNPTCLVLSPTRELAVQI--------SDVLREAGEPCGLKSICVYGGSSKG 232
Query: 253 XXVIS-EDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSS 311
+ + DI+I TP RL +++ L L V ++ DEAD++ D F E ILS+
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN 292
Query: 312 CTDPHLRKTMFSATIPSNVEEIAQTIMN-DPIRVIIGHKEAANINIDQQLVFCGNEEGK- 369
T+ + MFSAT P +V ++AQ M+ +PI+VIIG + A + Q++ +E +
Sbjct: 293 -TNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARD 351
Query: 370 --LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
LIA+ + + + K V++F A+ L L IH + Q +R + +
Sbjct: 352 QRLIALLEKYHKSQ-KNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLS 410
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY 487
FK G L+ TDV ARG+D V +VINY P + + YVH A TF+
Sbjct: 411 LFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFF 470
Query: 488 TKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESL 527
T + ++NV++++G V + K + K+++ L
Sbjct: 471 TPLNKGLAGELVNVLREAGQVVPADLLKFGTHVKKKESKL 510
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 158 bits (400), Expect = 2e-38
Identities = 123/438 (28%), Positives = 209/438 (47%), Gaps = 56/438 (12%)
Query: 106 QDALKL-RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESI 164
QDA+ RK + V G VP PI + ++L+ L + N+ +P PIQ++++
Sbjct: 372 QDAVNAYRKELELKVHGKDVPRPIQFWHQT----GLTSKILDTLKKLNYEKPMPIQAQAL 427
Query: 165 PILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV----GLKGLIISPTKELANQIF 220
PI++ RD I A TGSGKTL F++P+L+ I D+ V G GL+++PT+EL QI+
Sbjct: 428 PIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVEAGDGPIGLVMAPTRELVQQIY 486
Query: 221 IECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY--DIIISTPLRLITVV--- 275
+ K + + + ISE K +I++ TP R+I ++
Sbjct: 487 SDIRKFSKALGI---------ICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 537
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQ 335
+ NL +V +L+ DEAD++FD F Q I+ + P + +FSAT P VE +A+
Sbjct: 538 SGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTVLFSATFPRQVETLAR 596
Query: 336 TIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITR 395
++N P+ + +G + N +I Q LV E + + +L+ E K V++F+ S
Sbjct: 597 KVLNKPVEIQVGGRSVVNKDITQ-LVEIRPESERFSRLLELLGEWYEKGKVLVFVRS--- 652
Query: 396 AKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLV 455
++K I FKS LI T V ARG+D K + LV
Sbjct: 653 --------------------------QEKSISDFKSDVCNLLIATSVAARGLDVKELELV 686
Query: 456 INYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQK 515
+N+D P + YVH A+TF ++ D+ ++ ++ S V + ++
Sbjct: 687 VNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKA 746
Query: 516 IS-SMSKREKESLKKGKG 532
++ + K+ +++ G
Sbjct: 747 VAEGFMAKVKQGIEQAHG 764
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 157 bits (396), Expect = 5e-38
Identities = 120/422 (28%), Positives = 206/422 (48%), Gaps = 47/422 (11%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII-NDKTTV 202
+L L F PT IQ ++IP+ L +D++ A TGSGKT AF++P+L++++ K
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 203 GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYD 262
+ LI+ PT+ELA Q +K+A+ + D L + + D
Sbjct: 330 TTRVLILCPTRELAMQCHSVATKIAS--FTDIMVCLCIGGLSLKLQEQEL-----RKRPD 382
Query: 263 IIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM 321
I+I+TP R I ++ + + ++ ++ DEAD++ + F ++ ++I+ +C P R+TM
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQAC--PKSRQTM 440
Query: 322 -FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEG 380
FSAT+ V+++ + +N P+RV + +K+ + Q+ V + L + L
Sbjct: 441 LFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCK 500
Query: 381 E-FKPPVIIFLESITRAKALFHELLYD----KLNVDVIHAERTQVQRDKIIERFKSGDLW 435
E F IIF R+KA H++ LN IH +Q QR + +E F+ G
Sbjct: 501 ELFHRRTIIFF----RSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCN 556
Query: 436 CLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
L+ TDV +RG+D KG+ +VINY+ P + + Y+H +AIT + D +
Sbjct: 557 YLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVL 616
Query: 496 KPI-----------------INVMKQSGCEVSEW---MQKISSMSKREKE------SLKK 529
K + N +++ G E+ E +QK+ K+E+E LKK
Sbjct: 617 KGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKK 676
Query: 530 GK 531
G+
Sbjct: 677 GE 678
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 155 bits (393), Expect = 1e-37
Identities = 119/430 (27%), Positives = 202/430 (46%), Gaps = 37/430 (8%)
Query: 103 ITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSE 162
+T++D R+ + + G+ +P P+ S+E+ + LL + + +P+PIQ
Sbjct: 287 MTERDWRIFREDFNISYKGSRIPRPMRSWEES----KLTSELLKAVERAGYKKPSPIQMA 342
Query: 163 SIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN------DKTTVGLKGLIISPTKELA 216
+IP+ L +RD+I A TGSGKT AF++P+L I + T G ++++PT+ELA
Sbjct: 343 AIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELA 402
Query: 217 NQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQ 276
QI E K A+ YL +V I++ +I+I+TP RLI ++
Sbjct: 403 QQIEEETVKFAH--YLG----FRVTSIVGGQSIEEQGLKITQG-CEIVIATPGRLIDCLE 455
Query: 277 EEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT---------------- 320
L + +++ DEAD++ D F Q +L + +L+
Sbjct: 456 RRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTY 515
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLE- 379
MFSAT+P VE +A+ + +P+ V IG I Q ++ E K +++L+ E
Sbjct: 516 MFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESE-KFFRLQKLLDEL 574
Query: 380 GEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLIC 439
GE I+F+ + ++ L V +H ++Q QR+ +E F++ L+
Sbjct: 575 GE--KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVA 632
Query: 440 TDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPII 499
TDV+ RG+D V VINYD+P+ + Y H A +F T D+ +
Sbjct: 633 TDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLK 692
Query: 500 NVMKQSGCEV 509
++ QS V
Sbjct: 693 QMLVQSNSAV 702
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 154 bits (390), Expect = 3e-37
Identities = 110/368 (29%), Positives = 178/368 (47%), Gaps = 16/368 (4%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
F+D+ + D+ LL + F EP+ IQ +I ++ D++A A +G+GKT F I
Sbjct: 24 FDDM----ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 79
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
LQ+I D + + L+++PT+ELA QI LA ++D K +
Sbjct: 80 ALQRI--DTSVKAPQALMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAE 135
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
I++ TP R+ +Q K+K I DEAD++ F EQ I +
Sbjct: 136 GLRDA------QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 189
Query: 311 SCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKL 370
P + + SAT+P++V E+ M +P+R+++ E I Q V EE K
Sbjct: 190 -LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 248
Query: 371 IAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFK 430
+ L + +IF + + + L +L DK V I+++ Q +RD I++ F+
Sbjct: 249 ECLTDLY-DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 307
Query: 431 SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQ 490
SG LI TD+LARG+D + V+LVINYD+P + + Y+H AI F T +
Sbjct: 308 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 367
Query: 491 DSLAIKPI 498
D A++ +
Sbjct: 368 DVGAMREL 375
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 154 bits (390), Expect = 3e-37
Identities = 110/368 (29%), Positives = 178/368 (47%), Gaps = 16/368 (4%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
F+D+ + D+ LL + F EP+ IQ +I ++ D++A A +G+GKT F I
Sbjct: 24 FDDM----ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 79
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
LQ+I D + + L+++PT+ELA QI LA ++D K +
Sbjct: 80 ALQRI--DTSVKAPQALMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAE 135
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
I++ TP R+ +Q K+K I DEAD++ F EQ I +
Sbjct: 136 GLRDA------QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 189
Query: 311 SCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKL 370
P + + SAT+P++V E+ M +P+R+++ E I Q V EE K
Sbjct: 190 -LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 248
Query: 371 IAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFK 430
+ L + +IF + + + L +L DK V I+++ Q +RD I++ F+
Sbjct: 249 ECLTDLY-DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 307
Query: 431 SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQ 490
SG LI TD+LARG+D + V+LVINYD+P + + Y+H AI F T +
Sbjct: 308 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 367
Query: 491 DSLAIKPI 498
D A++ +
Sbjct: 368 DVGAMREL 375
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 154 bits (388), Expect = 5e-37
Identities = 113/383 (29%), Positives = 176/383 (45%), Gaps = 39/383 (10%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
I +F+D+ LL + F P+ IQ +I +L ERD++A A +G+GKT F
Sbjct: 18 IDTFDDM----NLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF 73
Query: 188 LIPLLQQIINDKTTVGLKGLIISPTKELANQIF-----------IECSK-LANKIYLDKK 235
I +LQ+I D + + LI++PT+ELA QI +EC + + D
Sbjct: 74 SISVLQKI--DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDM 131
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADK 295
LQ +++ TP R+ ++Q AL V+ + DEAD+
Sbjct: 132 AALQAGVH-------------------VVVGTPGRVHDMIQRRALPTDAVQMFVLDEADE 172
Query: 296 LFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANIN 355
+ + F +Q DI P + + SAT+P +V E+ M DPIR+++ E
Sbjct: 173 MLSRGFKDQIYDIFQ-LLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEG 231
Query: 356 IDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHA 415
I Q V EE KL + L E +IF + + L +L V +H
Sbjct: 232 IKQFYVAVEKEEWKLDTLCDLY-ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHG 290
Query: 416 ERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXX 475
+ Q QRD ++ F++G LI TD+LARG+D + V+LVINYD+P + + Y+H
Sbjct: 291 DMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGG 350
Query: 476 XXXXXXKAITFYTKQDSLAIKPI 498
+I F T D ++ I
Sbjct: 351 RFGRKGVSINFVTNDDVRMMREI 373
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 153 bits (386), Expect = 8e-37
Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 18/351 (5%)
Query: 156 PTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII----NDKTTVGLKGLIISP 211
PTPIQ+ +IP+ L RD+ CA TG+GKT A+++P L++++ N+K + L++ P
Sbjct: 180 PTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRV--LVLVP 237
Query: 212 TKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRL 271
T+EL Q++ +L +D V V+ ++ DI+I+TP RL
Sbjct: 238 TRELGAQVYQVTKQLCQFTTID------VGLAIGGLDVKAQEAVLRQNP-DIVIATPGRL 290
Query: 272 ITVVQEE-ALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSN 329
I ++ + L ++ LI DEAD++ D+ F EQ +I++SC R+TM FSAT+
Sbjct: 291 IDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT--RQTMLFSATMSEQ 348
Query: 330 VEEIAQTIMNDPIRVIIGHKEAANINIDQQLV-FCGNEEGKLIAIRQLVLEGEFKPPVII 388
V+++A ++ PI+V + + + N+ Q+ + ++EG I ++ F ++
Sbjct: 349 VKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMV 408
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F+++ +A L L + +H TQ QR + +++FK + LI TDV ARG+D
Sbjct: 409 FVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLD 468
Query: 449 FKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPII 499
GV VIN+ +P + + Y+H +++ +++ +K II
Sbjct: 469 IVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDII 519
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 150 bits (380), Expect = 4e-36
Identities = 122/434 (28%), Positives = 202/434 (46%), Gaps = 31/434 (7%)
Query: 107 DALKLRKSYQGNVSGNSVPLPIGSFE-DLITRFQFDKRLLNNLIENNFTEPTPIQSESIP 165
+ L K + V S P+G + + + N+ +T+ TPIQ ++P
Sbjct: 525 EGLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLP 584
Query: 166 ILLHERDMIACAPTGSGKTLAFLIPLLQQII--NDKTTVGLKG-----LIISPTKELANQ 218
++ D++ACA TGSGKT AFL+P++ ++I ND T G G +I++PT+EL +Q
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQ 644
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEE 278
I+ E K A + ++ RP+ E II+ T R+ +E
Sbjct: 645 IYNEGRKFAYQTMMEI-RPVYGGLAVGYNKGQI------EKGATIIVGTVGRIKHFCEEG 697
Query: 279 ALNLGKVKHLIFDEADKLFDKT-FVEQTDDILSSCTDP---HLRKTMFSATIPSNVEEIA 334
+ L K + + DEAD++ D F D I++ + P + + MFSAT P +V+E A
Sbjct: 698 TIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAA 757
Query: 335 QTIMNDP-IRVIIGHKEAANINIDQQLVFCGNEE--GKLIAIRQLVLEGE--------FK 383
+ + + I + I AAN + Q+ C E KL+ I + ++ +
Sbjct: 758 RNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYT 817
Query: 384 PPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVL 443
I+F+ A L L ++ IH R Q +R + + +F++G LI T V
Sbjct: 818 KKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVA 877
Query: 444 ARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
RG+D KGV+ VINYD+P + Y+H +A +F + +D + ++ V+
Sbjct: 878 ERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELVRVLS 936
Query: 504 QSGCEVSEWMQKIS 517
+ V EWMQ S
Sbjct: 937 DADQLVPEWMQGAS 950
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 150 bits (380), Expect = 4e-36
Identities = 107/382 (28%), Positives = 185/382 (48%), Gaps = 16/382 (4%)
Query: 117 GNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIAC 176
G + GN + + SF+D+ + + LL + F +P+ IQ +I +D+IA
Sbjct: 18 GLIEGNYDQV-VESFDDM----ELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQ 72
Query: 177 APTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKR 236
A +G+GKT F + +LQ+I ++ V + L+++PT+ELA QI S L YL+
Sbjct: 73 AQSGTGKTATFSVSILQRIDHEDPHV--QALVMAPTRELAQQIQKVMSALGE--YLNVNI 128
Query: 237 PLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKL 296
+ I +++ TP R+ ++ AL+ ++K + DEAD++
Sbjct: 129 LPCIGGTSVRDDQRKLEAGIH-----VVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 297 FDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
+ F +Q ++ S ++ + SAT+PS V ++ M +PIR+++ E I
Sbjct: 184 LSRGFKDQIYEVFRSMPQD-VQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGI 242
Query: 357 DQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAE 416
Q + +E K + L VI F + + L ++ ++ V +H +
Sbjct: 243 RQFYINVQKDEWKFDCLCDLYNVVNVTQAVI-FCNTRRKVDTLTEKMTENQFTVSCLHGD 301
Query: 417 RTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXX 476
Q +RD I+ F+SG LI TD+LARG+D + V+LVINYD+P + + Y+H
Sbjct: 302 MDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 477 XXXXXKAITFYTKQDSLAIKPI 498
AI F T+ D+ +K I
Sbjct: 362 FGRKGVAINFVTENDARQLKEI 383
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 150 bits (380), Expect = 4e-36
Identities = 107/370 (28%), Positives = 177/370 (46%), Gaps = 17/370 (4%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
+F+D+ R + LL + F +P+ IQ +I + RD+IA A +G+GKT F I
Sbjct: 17 NFDDMNLR----EELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSI 72
Query: 190 PLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXX 249
+LQQI D + + LI++PT+ELA QI ++ + ++V
Sbjct: 73 AILQQI--DTSIRECQALILAPTRELATQI--------QRVVMALGEYMKVHSHACIGGT 122
Query: 250 XXXXXV-ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDI 308
I E +++ TP R+ ++ + L +K + DEAD++ + F +Q D+
Sbjct: 123 NVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDV 182
Query: 309 LSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG 368
P ++ + SAT+P +V E+++ M DP+ +++ +E I Q V E
Sbjct: 183 FKMLP-PDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENW 241
Query: 369 KLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIER 428
KL + L VI F + + L E+ V +H + Q R+ I+++
Sbjct: 242 KLGTLCDLYDTLSITQSVI-FCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQ 300
Query: 429 FKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYT 488
F+SG LI TD+LARG+D + V+LVINYD+P + + Y+H AI F T
Sbjct: 301 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFIT 360
Query: 489 KQDSLAIKPI 498
D +K I
Sbjct: 361 DDDRRILKDI 370
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 150 bits (379), Expect = 5e-36
Identities = 114/409 (27%), Positives = 196/409 (47%), Gaps = 42/409 (10%)
Query: 109 LKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILL 168
L+++ S + GN FED + + LL + E + +P+PIQ ESIPI L
Sbjct: 72 LRIKTSDVTSTKGNE-------FEDYCLK----RELLMGIFEMGWEKPSPIQEESIPIAL 120
Query: 169 HERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLAN 228
RD++A A G+GK+ A+LIPLL+++ D ++ ++I PT+ELA Q+ C
Sbjct: 121 SGRDILARAKNGTGKSGAYLIPLLERL--DLKKDNIQAMVIVPTRELALQVSQIC----- 173
Query: 229 KIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHL 288
I + K + +D ++I+TP R++ ++++ + V+ +
Sbjct: 174 -IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMI 232
Query: 289 IFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVII- 346
+ DEADKL + FV+ +DI+ T P R+ + +SAT P +V++ + + P + +
Sbjct: 233 VLDEADKLLSQDFVQIMEDII--LTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM 290
Query: 347 ------GHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
G + ++Q V C N + I Q IIF S R + L
Sbjct: 291 EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQS----------IIFCNSSQRVELLA 340
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
++ + IHA+ Q R+++ F++G L+CTD+ RG+D + VN+VIN+D
Sbjct: 341 KKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDF 400
Query: 461 PRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEV 509
P+ A+ Y+H AI T D +K ++ +Q G E+
Sbjct: 401 PKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLK---SIEEQLGTEI 446
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 149 bits (376), Expect = 1e-35
Identities = 110/376 (29%), Positives = 182/376 (48%), Gaps = 19/376 (5%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + F P+ IQS +I ++ +D+IA A +G+GKT F I LLQ I D
Sbjct: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI--DLRKKD 91
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
L+ LI+SPT+ELA+QI L + Y++ + + +
Sbjct: 92 LQALILSPTRELASQIGQVVKNLGD--YMN----VNAFAITGGKTLKDDLKKMQKHGCQA 145
Query: 264 IISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKT--FVEQTDDILSSCTDPHLRKTM 321
+ TP R++ +++++ L V+ L+ DEAD+L +T F +Q DI + + + +
Sbjct: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK-NCQVVV 204
Query: 322 FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGE 381
SAT+ ++ E+ + MNDP+++++ E + I Q +V EE K + + +
Sbjct: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-IYDSL 263
Query: 382 FKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTD 441
+IF + + L L+ V +H + Q +RDK++ F++G LI TD
Sbjct: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI--- 498
V ARG+D + V+LVINYD+P + Y+H AI F TK D ++ I
Sbjct: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
Query: 499 ----INVMKQSGCEVS 510
IN M + E+S
Sbjct: 384 YSIKINPMPANFAELS 399
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 149 bits (375), Expect = 1e-35
Identities = 119/458 (25%), Positives = 208/458 (44%), Gaps = 39/458 (8%)
Query: 103 ITKQDALKLRKSYQG-NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
+++ + +LR S + G P P+ + L + L +F TPIQS
Sbjct: 228 MSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKL---HFGSLTPIQS 284
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND----KTTVGLKGLIISPTKELAN 217
+++P ++ RD+I + TGSGKT+++L+PLL+Q+ K G GLI++PT+ELA
Sbjct: 285 QALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELAL 344
Query: 218 QIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV-- 275
QI E +K + + ++ + +I+++TP R I ++
Sbjct: 345 QIHEEVTK-----FTEADTSIRSVCCTGGSEMKKQITDLKRGT-EIVVATPGRFIDILTL 398
Query: 276 -QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIA 334
+ L+ ++ ++ DEAD+LFD F Q I+ + P + +FSAT P+ + A
Sbjct: 399 NDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVR-PDKQCVLFSATFPNKLRSFA 457
Query: 335 QTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEG-------------- 380
+++ PI + I K N N+ Q+ C +E+ K + QL+ E
Sbjct: 458 VRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQ 517
Query: 381 -----EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLW 435
E IIF+ S + +LL + IHA + +R +E+FK
Sbjct: 518 SSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNS 577
Query: 436 CLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
L+CT+VL+RG++ V+LVI Y+ ++ YVH AIT +
Sbjct: 578 ILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGA 637
Query: 496 KPIINVMKQSGCEVSEWMQ--KISSMSKREKESLKKGK 531
+ M+ + + +Q ++ MS + + +KKGK
Sbjct: 638 YILSKAMRDEEIKALDPLQAKELQEMSAKFESGMKKGK 675
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 149 bits (375), Expect = 1e-35
Identities = 107/371 (28%), Positives = 177/371 (46%), Gaps = 14/371 (3%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
+ SF+D+ + LL + F +P+ IQ +I + D+IA A +G+GKT F
Sbjct: 31 VDSFDDM----NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 86
Query: 188 LIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXX 247
I +LQQI D + L+++PT+ELA QI L + Y+ +
Sbjct: 87 AISILQQIELDLKAT--QALVLAPTRELAQQIQKVVMALGD--YMGASCHACIGGTNVRA 142
Query: 248 XXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+ + II+ TP R+ ++ L+ +K + DEAD++ + F +Q D
Sbjct: 143 EVQK----LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 198
Query: 308 ILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEE 367
I + + + SAT+PS+V E+ + M DPIR+++ +E I Q + EE
Sbjct: 199 IFQKLNS-NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 257
Query: 368 GKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
KL + L E +IF+ + + L ++ V +H + Q +RD I+
Sbjct: 258 WKLDTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 316
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY 487
F+SG LI TD+LARG+D + V+LVINYD+P + + Y+H AI
Sbjct: 317 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 376
Query: 488 TKQDSLAIKPI 498
T++D ++ I
Sbjct: 377 TEEDKRTLRDI 387
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 148 bits (374), Expect = 2e-35
Identities = 116/412 (28%), Positives = 200/412 (48%), Gaps = 34/412 (8%)
Query: 127 PIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
P SF D + + N+ +T TPIQ ++P++ +D++ACA TGSGKT A
Sbjct: 296 PCKSFSDS----DIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAA 351
Query: 187 FLIPLLQQIINDK-TTVGLKG------LIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
FL+P++ ++I +K G +G +I++PT+ELA+QI+ E K + + ++ K P+
Sbjct: 352 FLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIK-PVY 410
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK 299
II+ T R+ ++ A+ L K ++L+ DEAD++ D
Sbjct: 411 GGINVGYNKSQIMKGC------TIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDS 464
Query: 300 T-FVEQTDDILSSCTDPHLRK---TMFSATIPSNVEEIAQTIMNDPIRVI-IGHKEAANI 354
F + + I++ P K MFSAT PS+V+E A+ ++ + +I I AAN
Sbjct: 465 MGFGPEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANK 524
Query: 355 NIDQQLVFCG--NEEGKLIAIRQLVLE--------GEFKPPVIIFLESITRAKALFHELL 404
+ Q+ C ++ KL+ + + ++ F I+F+ A L +
Sbjct: 525 CVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMS 584
Query: 405 YDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSA 464
++ IH R Q +R ++ F+SG LI T V+ RG+D KGV+ VINYD+P +
Sbjct: 585 AAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNI 644
Query: 465 QAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKP-IINVMKQSGCEVSEWMQK 515
Y+H +A +F + D + I P ++ + + V WM++
Sbjct: 645 DDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKE 696
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 147 bits (370), Expect = 6e-35
Identities = 109/372 (29%), Positives = 174/372 (46%), Gaps = 17/372 (4%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
+ SFE++ + LL + + P+ +QS +I + RD+IA A +G+GKT F
Sbjct: 20 VSSFEEM----NLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATF 75
Query: 188 LIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXX 247
I +LQ I D + + LI+SPT+ELA QI + L + V
Sbjct: 76 SIGILQSI--DLSVRDTQALILSPTRELAVQI--------QNVVLALGDHMNVQCHACIG 125
Query: 248 XXXXXXXVISEDKYDIIIS-TPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTD 306
+ D ++S TP R+ +++ L VK LI DEAD+L ++ F EQ
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 307 DILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE 366
DI P + + SAT+P +V E+ +P+R+++ E + Q + E
Sbjct: 186 DIY-RYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKE 244
Query: 367 EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKII 426
E K + L + +IF S + L ++ V +H E Q +RD I+
Sbjct: 245 EWKFDTLCDL-YDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIM 303
Query: 427 ERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
+ F+ G+ LICTD+ ARG+D + V+LVINYD+P + + Y+H AI F
Sbjct: 304 QDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINF 363
Query: 487 YTKQDSLAIKPI 498
T +D ++ I
Sbjct: 364 VTNEDVRILRDI 375
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 147 bits (370), Expect = 6e-35
Identities = 107/353 (30%), Positives = 166/353 (46%), Gaps = 14/353 (3%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + F +P+ IQ ++P +L RD+IA A +G+GKT F I +LQ + D
Sbjct: 37 LLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSL--DTQVRE 94
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
+ LI+SPT+ELA QI K+ L + V + D
Sbjct: 95 TQALILSPTRELAVQI--------QKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH 146
Query: 264 IIS-TPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMF 322
++S TP R+ +++ L +K L+ DEAD++ +K F EQ DI P + +
Sbjct: 147 VVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLP-PGAQVVLL 205
Query: 323 SATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEF 382
SAT+P + E+ M DPIR+++ E I Q V EE K + L +
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY-DTLT 264
Query: 383 KPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDV 442
++F + + L ++ V +H + Q RD++++ F++G LI TDV
Sbjct: 265 ITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDV 324
Query: 443 LARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
ARG+D V+LVINYD+P + + Y+H AI F KQD + I
Sbjct: 325 WARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF-VKQDDVRI 376
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 146 bits (369), Expect = 7e-35
Identities = 107/358 (29%), Positives = 167/358 (45%), Gaps = 13/358 (3%)
Query: 142 KRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
+ LL + F +P+ IQ SI ++ RD+IA A +G+GKT F I +LQ + D T
Sbjct: 35 EELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--DTTL 92
Query: 202 VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
+ L +SPT+ELA QI K+ L + V + D
Sbjct: 93 RETQVLCLSPTRELAVQI--------QKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYG 144
Query: 262 DIIIS-TPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT 320
I+S TP R+ +++ L +K L+ DEAD++ +K F EQ D+ P +
Sbjct: 145 QHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PATQVV 203
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEG 380
+ SAT+P + E+ M DPIR+++ E I Q V EE K + L +
Sbjct: 204 LISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DT 262
Query: 381 EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICT 440
+IF + + L ++ V +H + Q +RD+I++ F++G LI T
Sbjct: 263 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITT 322
Query: 441 DVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
DV ARG+D + V+LVINYD+P + + Y+H AI F D ++ I
Sbjct: 323 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 380
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 145 bits (367), Expect = 1e-34
Identities = 113/395 (28%), Positives = 188/395 (46%), Gaps = 30/395 (7%)
Query: 128 IGSFEDLITRFQFDKRL------LNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGS 181
I ++ IT+ +F K L L L E++F + T IQ++SIP+ L D++A A TGS
Sbjct: 30 IDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGS 89
Query: 182 GKTLAFLIPLLQQIINDKTTV--GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
GKTLAFL+P+++++ +K T GL LIISPT+ELA QI+ +K+ +
Sbjct: 90 GKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHT--------S 141
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV-QEEALNLGKVKHLIFDEADKLFD 298
+ + + +I+I TP R++ + Q LN ++ L+ DEAD+ D
Sbjct: 142 FSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD 201
Query: 299 KTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGH--------KE 350
F + D I+S+ + P + +FSAT +V ++A+ + D + + H KE
Sbjct: 202 MGFKKTLDAIVSTLS-PSRQTLLFSATQSQSVADLARLSLTD-YKTVGTHDVMDGSVNKE 259
Query: 351 AANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNV 410
A+ QQ KL + + + K +I+FL S + ++ + +
Sbjct: 260 ASTPETLQQFYIEVPLADKLDILFSFI-KSHLKCKMIVFLSSSKQVHFVYETFRKMQPGI 318
Query: 411 DVIHAERTQVQRDKI--IERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
++H Q QR + +++F CL TDV+ARG+DF V+ V+ D P Y+
Sbjct: 319 SLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYI 378
Query: 469 HXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
H K++ T Q+ A +N K
Sbjct: 379 HRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARK 413
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 145 bits (367), Expect = 1e-34
Identities = 116/412 (28%), Positives = 193/412 (46%), Gaps = 57/412 (13%)
Query: 152 NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISP 211
N+++PTPIQS++IP L D+I A TGSGKT AF IP+L ++ +D+ I++P
Sbjct: 142 NYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY--YACILAP 199
Query: 212 TKELANQIFIECSKLANKI------------YLDKKRPLQVAXXXXXXXXXXXXXVISED 259
T+ELA QI L + + +D+ R L
Sbjct: 200 TRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLM-------------------R 240
Query: 260 KYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLR 318
K III+TP RL+ ++ + +L K+K L+ DEAD+L D F D IL
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 319 KTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVL 378
+FSAT+ S ++++ + + +P++ + +K + Q L+ G L + L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV---PGGLKNTYLIYL 357
Query: 379 EGEF-KPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCL 437
EF +IIF + A+ L + + +H + Q QR ++ FK+G L
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 417
Query: 438 ICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI-- 495
+ TDV ARG+D V++V+NYD+P +++Y+H K+I+ ++ D I
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 496 ---------------KPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKG 532
K II ++ S + + + + M++R KE + +GKG
Sbjct: 478 IEEVLGKKLPKESVDKNIILTLRDSVDKANG--EVVMEMNRRNKEKIARGKG 527
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 145 bits (366), Expect = 2e-34
Identities = 110/390 (28%), Positives = 188/390 (48%), Gaps = 30/390 (7%)
Query: 147 NLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKT--TVGL 204
N+ +++ TPIQ ++P++ D++ACA TGSGKT AFL+P++ ++I+D T G
Sbjct: 355 NVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGE 414
Query: 205 KG-----LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISED 259
G +I++PT+ELA+QI+ E K A + ++ K P+ E
Sbjct: 415 GGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIK-PVYGGLAVGYNKGQI------EK 467
Query: 260 KYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK----TFVEQTDDILSSCTDP 315
II+ T R+ +E + L K + + DEAD++ D T +E + S
Sbjct: 468 GATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKE 527
Query: 316 HLRKTMFSATIPSNVEEIAQTIMNDP-IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIR 374
+ + MFSAT P +V+E A+ + + + + I AAN + Q+ C E K +
Sbjct: 528 NRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLE 587
Query: 375 QLVLEGE----------FKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDK 424
L ++ + + ++F+ A L L ++ IH R Q +R +
Sbjct: 588 LLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSE 647
Query: 425 IIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAI 484
+ +F++G LI T V RG+D KGV+ VINYD+P + Y+H +A
Sbjct: 648 ALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRAT 707
Query: 485 TFYTKQDSLAIKPIINVMKQSGCEVSEWMQ 514
+F ++ SL + ++ V+ + V +WMQ
Sbjct: 708 SFISEDCSL-LSELVGVLADAQQIVPDWMQ 736
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 145 bits (365), Expect = 2e-34
Identities = 107/372 (28%), Positives = 181/372 (47%), Gaps = 16/372 (4%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
+ +F+D+ + LL + F +P+ IQ +I + D+IA A +G+GKT F
Sbjct: 32 VDNFDDM----NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 87
Query: 188 LIPLLQQI-INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXX 246
I +LQQ+ I K T + L+++PT+ELA QI + LA Y+ +
Sbjct: 88 AISILQQLEIEFKET---QALVLAPTRELAQQI--QKVILALGDYMGATCHACIGGTNVR 142
Query: 247 XXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTD 306
+ + I++ TP R+ ++ L+ +K + DEAD++ + F +Q
Sbjct: 143 NEMQK----LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIY 198
Query: 307 DILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE 366
+I + ++ SAT+P++V E+ + M DPIR+++ +E I Q + E
Sbjct: 199 EIFQKL-NTSIQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVERE 257
Query: 367 EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKII 426
E KL + L E +IFL + + L ++ V +H + Q +RD I+
Sbjct: 258 EWKLDTLCDLY-ETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIM 316
Query: 427 ERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
F+SG LI TD+LARG+D + V+LVINYD+P + + Y+H AI F
Sbjct: 317 REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINF 376
Query: 487 YTKQDSLAIKPI 498
T++D ++ I
Sbjct: 377 VTEEDKRILRDI 388
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 144 bits (364), Expect = 3e-34
Identities = 98/331 (29%), Positives = 172/331 (51%), Gaps = 18/331 (5%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
+ +++ + PTPIQ ++IP++L +D++A A TGSGKT FL+P+ +++ G
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTG 166
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
+ LI+SPT+ELA ++ K + L K L+ A + E+ DI
Sbjct: 167 ARALILSPTRELA----LQTLKFTKE--LGKFTGLKTALILGGDRMEDQFAALHENP-DI 219
Query: 264 IISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFS 323
II+TP RL+ V E +L L V++++FDEAD+LF+ F EQ +I++ H + +FS
Sbjct: 220 IIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH-QTVLFS 278
Query: 324 ATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQL---VFCGNEEGKLIAIRQLVLEG 380
AT+P + E A+ + +P+ + + + +++QL F E+ K + L L
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLD----VDTKLNEQLKTSFFLVREDTKAAVLLHL-LHN 333
Query: 381 EFKP--PVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLI 438
+P ++F+ + A+ L L +++ I++ R + +F G LI
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLI 393
Query: 439 CTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
TD+ ARG+D ++ VINY P + ++H
Sbjct: 394 VTDLAARGLDIPLLDNVINYSFPAKGKLFLH 424
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 144 bits (364), Expect = 3e-34
Identities = 110/373 (29%), Positives = 180/373 (47%), Gaps = 18/373 (4%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F + LL + E + P+PIQ +IPI L +D++A A G+GKT A+ IP+L+QI
Sbjct: 62 FCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQI-- 119
Query: 198 DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS 257
D T ++ L++ PT+ELA Q C +LA +LD ++V I
Sbjct: 120 DPTKDYIQALVMVPTRELALQTSQICIELAK--HLD----IRVMVTTGGTILKDDILRIY 173
Query: 258 EDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDD-ILSSCTDPH 316
+ K +II+TP R++ ++ ++ ++ + L+ DEADKL F D IL DP
Sbjct: 174 Q-KVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 232
Query: 317 LRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL 376
+ +FSAT P V+ + + +P + + +E + Q F E K+ + L
Sbjct: 233 I--LLFSATFPLTVKNFMEKHLREPYEINL-MEELTLKGVTQYYAFV-QERQKVHCLNTL 288
Query: 377 VLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWC 436
+ + IIF S R + L ++ IHA+ Q R+++ F+ G
Sbjct: 289 FSKLQINQS-IIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRN 347
Query: 437 LICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIK 496
L+C+D+ RG+D + VN+VIN+D PR A+ Y+H AI T +D +
Sbjct: 348 LVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLH 407
Query: 497 PIINVMKQSGCEV 509
+ K+ G E+
Sbjct: 408 ---RIEKELGTEI 417
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 144 bits (362), Expect = 5e-34
Identities = 114/395 (28%), Positives = 192/395 (47%), Gaps = 47/395 (11%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
+ SF+DL + LL + ++ PT IQ IP L+ R++I APTG GKT+ F
Sbjct: 98 LSSFKDLCSP------LLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCF 151
Query: 188 LIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLAN-------KIYLDKKRPLQV 240
LIP++++ K + IISPT+EL QI +E SKL IY KK+ L
Sbjct: 152 LIPIIERHRQMKKP---QACIISPTRELCEQIRVEASKLVAGSRIRVVSIY-GKKQDLP- 206
Query: 241 AXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKT 300
S DI+++TP RLI ++ + ++L +++ + DEADKL D
Sbjct: 207 ----------------SYSGVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLDMG 250
Query: 301 FVEQTDDILSSCTDPHLRKTMFSATI-PSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQ 359
F +I + + +FSAT P I + D + + I + NI Q+
Sbjct: 251 FEIPIREI-HGFVPKNTQTCLFSATYSPKLTRMINYFLPEDKVSIEISSETLKNIR--QE 307
Query: 360 LVFCGNEEGKLIAIRQ---LVLEGEFK-----PPVIIFLESITRAKALFHELLYDKLNVD 411
+V N++ L+ I + + L+G ++ V++F+E + + L +
Sbjct: 308 IVEVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCV 367
Query: 412 VIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXX 471
+H ++ Q RD+ ++ F++G ++ T V ARG+D K V LVINYD+P+ + Y+H
Sbjct: 368 SLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRI 427
Query: 472 XXXXXXXXXXKAITFYTKQDSLAI-KPIINVMKQS 505
K+I+FY + + K ++ V+++S
Sbjct: 428 GRTGREGKSGKSISFYDGGMTADLKKALVEVLRES 462
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 143 bits (361), Expect = 6e-34
Identities = 107/381 (28%), Positives = 185/381 (48%), Gaps = 42/381 (11%)
Query: 141 DKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKT 200
D RLL + + ++ PT IQ ++IP+ L +D++A A TGSGKT A+ IP+LQ +++ K
Sbjct: 15 DPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKA 74
Query: 201 T-----VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
T ++GL++ PTKELA Q +LA R ++VA V
Sbjct: 75 TGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYC----ARDVRVANVSAAEDSVSQRAV 130
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNL-GKVKHLIFDEADKLFDKTFVEQTDDILSSCTD 314
+ E K D+++ TP R+++ +Q+++L L ++ L+ DEAD LF F E+ +L C
Sbjct: 131 LME-KPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL--CHL 187
Query: 315 PHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQL-VFCGNEEGKLIA 372
P + + + SAT +V+ + + I+++P+ + + + + QQ V C EE K +
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 373 IRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSG 432
+ L+ + ++F+ ++ R+ L L + V++ E R II +F G
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQG 307
Query: 433 DLWCLICTDV---------------------------LARGVDFKGVNLVINYDVPRSAQ 465
C+I TD +ARG+DF V+ V+N+D+P + +
Sbjct: 308 FYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPE 367
Query: 466 AYVHXXXXXXXXXXXXKAITF 486
AY+H +TF
Sbjct: 368 AYIHRAGRTARANNPGIVLTF 388
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 143 bits (361), Expect = 6e-34
Identities = 101/394 (25%), Positives = 196/394 (49%), Gaps = 14/394 (3%)
Query: 139 QFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND 198
+ D+ L+ E T PT +Q + IP +L D+IA + TGSGKTLAF++P++ ++
Sbjct: 7 RIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQK 66
Query: 199 KTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISE 258
+ L+++PT+EL++QI EC + + L+V +S+
Sbjct: 67 NRSFYC--LVVAPTRELSSQI-AECFNMF------QATGLRVCLLVGGANFNVQANQLSK 117
Query: 259 DKYDIIISTPLRLIT-VVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL 317
+ +++ TP R+ V++ ++ +V+ + DEAD+ F++ FVE + I+ S +
Sbjct: 118 RPH-VVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKR- 175
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
+ +F+AT+ + +++ +I+ P + K + + +F + K A+ +L
Sbjct: 176 QTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMK-WKNSALVEL- 233
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCL 437
LE VI+F+ A+ + L + +H E +Q +R++ + FK L
Sbjct: 234 LEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVL 293
Query: 438 ICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKP 497
+CTD+ +RG+D V+LVIN+DVP+S + Y+H AIT T+ D I+
Sbjct: 294 VCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQK 353
Query: 498 IINVMKQSGCEVSEWMQKISSMSKREKESLKKGK 531
I +++ E + ++ R +E++++ +
Sbjct: 354 IEFTLEKKLEEFKMMKKNFGTICARIEEAIQEAQ 387
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 143 bits (361), Expect = 6e-34
Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 39/427 (9%)
Query: 124 VPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGK 183
+P P+ SFE F + ++ + +N F +P+PIQS+ P+LL +D I + TGSGK
Sbjct: 78 IPPPVNSFEQA---FGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGK 134
Query: 184 TLAFLIPLLQQII---------NDKTTVGLKGLIISPTKELANQIFIECSKLANK----- 229
TLAFL+P L I +++ L++SPT+ELA QI E K +
Sbjct: 135 TLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSV 194
Query: 230 -IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHL 288
+Y RP QV +I+I+TP RL + + ++L V ++
Sbjct: 195 CLYGGGSRPEQVEA--------------CRGGVEIVIATPGRLTDLSNDGVISLASVTYV 240
Query: 289 IFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGH 348
+ DEAD++ D F IL L + SAT P V ++ + + + G
Sbjct: 241 VLDEADRMLDMGFEVAIRRILFEIRPDRL-VALTSATWPEGVRKLTDKYTKEAVMAVNGS 299
Query: 349 KEAANINIDQQLVFCGNEEGKLIAIRQLV-----LEGEFKPPVIIFLESITRAKALFHEL 403
+ + Q + + + + ++V G+ +IIF++S A L +
Sbjct: 300 LDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQ-NYKMIIFVKSKVMADHLSSDF 358
Query: 404 LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
+N +H R+Q R+ + +SG++ L+ TD+ +RG+D + V+NYD P
Sbjct: 359 CMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMD 418
Query: 464 AQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKRE 523
+ YVH +A++F D + +I ++++S EV + +++ + + +
Sbjct: 419 IEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDAEKYRLK 478
Query: 524 KESLKKG 530
+S + G
Sbjct: 479 CQSGRDG 485
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 143 bits (360), Expect = 8e-34
Identities = 100/371 (26%), Positives = 190/371 (50%), Gaps = 18/371 (4%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
+L L + +P+PIQS +IPI L +D+IA A TGSGKT AF+IP++++++ +
Sbjct: 242 VLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIA 301
Query: 204 -LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYD 262
+ +++ PT+ELA Q+ + K + L V + + + D
Sbjct: 302 STRVIVLLPTRELAIQV-ADVGKQIARFVSGITFGLAVGGLNLRQQEQ-----MLKSRPD 355
Query: 263 IIISTPLRLITVVQEEA-LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM 321
I+I+TP R I ++ A N+ V+ L+ DEAD++ ++ F ++ ++I+ + + +
Sbjct: 356 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS-NRQNLL 414
Query: 322 FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIA-----IRQL 376
FSAT+ S ++ + + P+R++I + A + Q+ V + A IR+L
Sbjct: 415 FSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKL 474
Query: 377 VLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWC 436
G+ + V + + + LL ++V +H TQ QR + +FK+ ++
Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLL--GMSVGELHGSLTQEQRLDSVNKFKNLEVPV 532
Query: 437 LICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY--TKQDSLA 494
LICTD+ +RG+D + +VINYD+P+S + Y+H +++TF + QD
Sbjct: 533 LICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592
Query: 495 IKPIINVMKQS 505
++ I ++++
Sbjct: 593 VRAAIKSVEEN 603
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 143 bits (360), Expect = 8e-34
Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 17/340 (5%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
+FED F + LL + E F +P+PIQ E+IP+ + RD++A A G+GKT AF+I
Sbjct: 47 TFED----FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 102
Query: 190 PLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXX 249
P L+++ + + LI+ PT+ELA ++ S++ L K +
Sbjct: 103 PTLEKVKPKLNKI--QALIMVPTRELA----LQTSQVVRT--LGKHCGISCMVTTGGTNL 154
Query: 250 XXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDIL 309
++E + I++ TP R++ + + +L I DEADK+ + F + IL
Sbjct: 155 RDDILRLNETVH-ILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 213
Query: 310 SSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGK 369
S H + +FSAT P V+E ++ P + + +E I Q F E K
Sbjct: 214 SFLPPTH-QSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFV-EERQK 270
Query: 370 LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERF 429
L + L + + IIF S R + L ++ + HA Q +R+K+ F
Sbjct: 271 LHCLNTLFSKLQINQ-AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF 329
Query: 430 KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ G + L+C+D+L RG+D + VN+VIN+D P++A+ Y+H
Sbjct: 330 RQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH 369
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 143 bits (360), Expect = 8e-34
Identities = 110/397 (27%), Positives = 185/397 (45%), Gaps = 23/397 (5%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITR------FQFDKRLLNNLIENNFTEPTPIQSESIP 165
R+S++G + V + + + TR + + LL + E F P+PIQ ESIP
Sbjct: 17 RESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIP 76
Query: 166 ILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSK 225
I L RD++A A G+GKT AF+IP L+++ K+ + + LI+ PT+ELA Q C
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKI--QTLILVPTRELALQTSQVCKT 134
Query: 226 LANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS-EDKYDIIISTPLRLITVVQEEALNLGK 284
L + + V +I D I++ TP R++ + + + +
Sbjct: 135 LG--------KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSE 186
Query: 285 VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK-TMFSATIPSNVEEIAQTIMNDPIR 343
+ DEADKL F + +LS P R+ +++SAT P V+ +N P
Sbjct: 187 CTTFVMDEADKLLSPEFTPIIEQLLSYF--PKNRQISLYSATFPLIVKNFMDKHLNKPYE 244
Query: 344 VIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHEL 403
+ + E + Q F +E K+ + L + + IIF S R + L ++
Sbjct: 245 INL-MDELTLRGVTQYYAFV-DESQKVHCLNTLFSKLQINQS-IIFCNSTNRVELLAKKI 301
Query: 404 LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
+ HA+ Q R+++ F++G L+C+D+L RG+D + VN+VIN+D P++
Sbjct: 302 TELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKN 361
Query: 464 AQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIIN 500
A+ Y+H AI+F + D + I N
Sbjct: 362 AETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIEN 398
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 143 bits (360), Expect = 8e-34
Identities = 107/367 (29%), Positives = 185/367 (50%), Gaps = 19/367 (5%)
Query: 129 GSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFL 188
G FE L + N + + + PTPIQ +++P++L D++A A TGSGKT AFL
Sbjct: 28 GGFESL----NLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFL 83
Query: 189 IPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXX 248
IP+L+++ G++ LI+SPT++LA Q K + L K L+V+
Sbjct: 84 IPMLEKLKQHVPQGGVRALILSPTRDLAEQTL----KFTKE--LGKFTDLRVSLLVGGDS 137
Query: 249 XXXXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+++ D+II+TP RL+ ++ E + + L V++++FDEAD LF F EQ
Sbjct: 138 MEDQFEELTKGP-DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQ 196
Query: 308 ILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDP--IRVIIGHKEAANINIDQQLVFCGN 365
IL+ ++ + + +FSAT+PS + E A+ + +P +R+ + +K + ++ + V
Sbjct: 197 ILTQLSE-NRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTV---R 252
Query: 366 EEGKLIAIRQLVLEG-EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDK 424
E K A+ LV E +IF+ + + + + + V + + Q R
Sbjct: 253 PEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKI 312
Query: 425 IIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAI 484
+ RF++ LI TD+ ARG+D ++ VIN+D P + +VH A
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAY 372
Query: 485 TFYTKQD 491
+F T +D
Sbjct: 373 SFVTPED 379
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 142 bits (358), Expect = 1e-33
Identities = 103/413 (24%), Positives = 197/413 (46%), Gaps = 46/413 (11%)
Query: 119 VSGNSVPLPIG-SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
+ G S+ + SFE + +++L +++PTPIQ IP+ L +D+ ACA
Sbjct: 137 IDGKSLDTSVNVSFEQM----NLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACA 192
Query: 178 PTGSGKTLAFLIPLLQQII-NDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKR 236
TG+GKT AF++P+L+++I K + L++ PT+ELA Q+F KL+ I L+
Sbjct: 193 ATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLE--- 249
Query: 237 PLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEE-ALNLGKVKH-------- 287
V + D++++TP RLI + + NL ++
Sbjct: 250 ---VCLCAGGLDLKAQEAALRSGP-DVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIP 305
Query: 288 ----------------LIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVE 331
L+ DEAD++ ++ F +Q ++++ C + + +FSAT+ ++
Sbjct: 306 PKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQ-NRQTLLFSATMTEEID 364
Query: 332 EIAQTIMNDPIRVIIGHKEAANINIDQQLVF--CGNEEGKLIAIRQLVLEGEFKPPVIIF 389
E+A + P+++ I + + Q+ + G E + + LV F+ I+F
Sbjct: 365 ELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTR-TFQTNTIVF 423
Query: 390 LESITRAKALFHELLYDKLNVDV--IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGV 447
+ T+ ++L L + V + + TQ QR + + +FK ++ L+ TD+ +RG+
Sbjct: 424 VR--TKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGL 481
Query: 448 DFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIIN 500
D +GV VIN ++P+S + Y+H ++I+ + + +K I+N
Sbjct: 482 DIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVN 534
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 142 bits (358), Expect = 1e-33
Identities = 106/362 (29%), Positives = 176/362 (48%), Gaps = 19/362 (5%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FED + + LL + E F +P+PIQ ESIPI L D++A A G+GKT AF IP
Sbjct: 126 FEDYFLK----RDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIP 181
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
+L++I D ++ +I+ PT+ELA Q C +L+ YL+ +QV
Sbjct: 182 VLEKI--DPNNNVIQAMILVPTRELALQTSQVCKELSK--YLN----IQVMVTTGGTSLR 233
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
+ + + +++ TP R++ + ++ L L+ DEADKL F ++++
Sbjct: 234 DDIMRLHQPVH-LLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQ 292
Query: 311 SCTDPHLRK-TMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGK 369
P R+ MFSAT P V+ + P VI + + + Q F E K
Sbjct: 293 FL--PQNRQFLMFSATFPVTVKAFKDRHLRKPY-VINLMDQLTLMGVTQYYAFV-EERQK 348
Query: 370 LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERF 429
+ + L + + IIF S+ R + L ++ + IHA+ Q R+++ F
Sbjct: 349 VHCLNTLFSKLQINQS-IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEF 407
Query: 430 KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTK 489
++G L+CTD+ RG+D + VN+VIN+D PR++++Y+H A+ T
Sbjct: 408 RNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTY 467
Query: 490 QD 491
+D
Sbjct: 468 ED 469
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 142 bits (358), Expect = 1e-33
Identities = 105/393 (26%), Positives = 180/393 (45%), Gaps = 18/393 (4%)
Query: 127 PIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
PI SF D+ + + +L + E F +P+ IQ ++ +L RD+IA A +G+GKT
Sbjct: 33 PITSFNDMGIK----EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSM 88
Query: 187 FLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXX 246
+ + Q + D ++ ++ LI+SPT+ELA Q K I L
Sbjct: 89 IALSVCQVV--DTSSREVQALILSPTRELATQT----EKTIQAIGLHANIQAHACIGGNS 142
Query: 247 XXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTD 306
E ++ TP R+ +++ +L +K LI DE+D++ + F +Q
Sbjct: 143 VGEDIRKL---EHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIY 199
Query: 307 DILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE 366
D+ P L+ + SAT+P + E+ M +P+++++ E I Q V E
Sbjct: 200 DVYRYLP-PDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKE 258
Query: 367 EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKII 426
E K + L + +IF + + L ++ V +H + Q +RD I+
Sbjct: 259 EWKFDTLCDLY-DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIM 317
Query: 427 ERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
F+SGD LI TDV ARG+D + V+LVINYD+P + + Y+H AI F
Sbjct: 318 NEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 377
Query: 487 YTKQDSLAIKPIINVMKQSGCEVSEWMQKISSM 519
D IK + ++ + ++ E ++ +
Sbjct: 378 VKSDD---IKILRDIEQYYSTQIDEMPMNVADL 407
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 142 bits (357), Expect = 2e-33
Identities = 106/345 (30%), Positives = 176/345 (50%), Gaps = 23/345 (6%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPT 212
+T+PT IQ E+IP+ L RD+I A TGSGKT AF +P+L ++ +T L L+++PT
Sbjct: 44 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL--ETPQRLFALVLTPT 101
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
+ELA QI + L + I +Q A +++ K III+TP RLI
Sbjct: 102 RELAFQISEQFEALGSSI------GVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLI 154
Query: 273 TVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNV 330
++ + NL +K+L+ DEAD++ + F + D IL P RKT +FSAT+ V
Sbjct: 155 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI--PRDRKTFLFSATMTKKV 212
Query: 331 EEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE--EGKLIAIRQLVLEGEFKPPVII 388
+++ + + +P++ + K + Q +F ++ + L+ I + F +I
Sbjct: 213 QKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSF----MI 268
Query: 389 FLESITRAKALFHELLYDKLNVDVI--HAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
F + + LL L I H + +Q +R + +FK+ L+ TDV +RG
Sbjct: 269 FCSTCNNTQRT--ALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 447 VDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQD 491
+D V++V+N+D+P ++ Y+H KAITF T+ D
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 141 bits (355), Expect = 3e-33
Identities = 104/360 (28%), Positives = 170/360 (46%), Gaps = 10/360 (2%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQI-- 195
F LL + ++ F P+ +Q IP + D++ A +G GKT F++ LQQI
Sbjct: 56 FLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEP 115
Query: 196 INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
++ + +V L++ T+ELA QI E ++ + YL R
Sbjct: 116 VDGEVSV----LVLCHTRELAFQIKNEYARFSK--YLPDVRTAVFYGGINIKQDMEAFKD 169
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDP 315
S+ + I+++TP RL +V+E+ L + VKH + DE DKL + + + + T P
Sbjct: 170 KSKSPH-IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPP 228
Query: 316 HLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQ 375
+ MFSAT+ + + I + M +P+ + + + ++ QQ E+ K I
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKIND 288
Query: 376 LVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLW 435
L+ EF V+IF++S++RA L L IH Q +R K + FK D
Sbjct: 289 LLDSLEFN-QVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 436 CLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
+ TDV RG+D + VN+VINYD+P S +Y+H AITF + ++ I
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 141 bits (355), Expect = 3e-33
Identities = 99/380 (26%), Positives = 179/380 (47%), Gaps = 16/380 (4%)
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
++ G+ V + F D + + LL +++ F P+ +Q E IP + D++ A
Sbjct: 33 DIKGSYVSIHSSGFRDFLLK----PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQA 88
Query: 178 PTGSGKTLAFLIPLLQQI--INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKK 235
+G GKT F++ LQQI +N + TV L++ T+ELA QI E + + Y+
Sbjct: 89 KSGMGKTAVFVLATLQQIEPVNGQVTV----LVMCHTRELAFQISKEYERFSK--YMPS- 141
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADK 295
++V+ V+ ++ +++ TP R++ +V+ + +L VKH + DE DK
Sbjct: 142 --VKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDK 199
Query: 296 LFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANIN 355
+ ++ + + + T + MFSAT+ ++ + + M DP+ V + + ++
Sbjct: 200 MLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLH 259
Query: 356 IDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHA 415
QQ + K + L+ EF VIIF++S+ R AL L+ IH
Sbjct: 260 GLQQYYVKLKDSEKNRKLFDLLDVLEFNQ-VIIFVKSVQRCMALAQLLVEQNFPAIAIHR 318
Query: 416 ERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXX 475
Q +R ++FK L+ T++ RG+D + VN+V NYD+P + Y+H
Sbjct: 319 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 378
Query: 476 XXXXXXKAITFYTKQDSLAI 495
AITF + ++ I
Sbjct: 379 RFGTKGLAITFVSDENDAKI 398
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 141 bits (355), Expect = 3e-33
Identities = 94/342 (27%), Positives = 171/342 (49%), Gaps = 14/342 (4%)
Query: 129 GSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFL 188
G F+ + F+ L+ + + + PTPIQ ++IP++L RD++A A TGSGKT FL
Sbjct: 95 GGFQSMGLGFE----LIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFL 150
Query: 189 IPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXX 248
IPL +++ + T G + LI+SPT+ELA Q + +L +++ K L +
Sbjct: 151 IPLFEKLQRREPTKGARALILSPTRELAVQTYKFIKELGR--FMELKSILVLGGDSMDSQ 208
Query: 249 XXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDI 308
D+I++TP R + + E L L +++++FDEAD+LF+ F EQ ++
Sbjct: 209 FSAIHTC-----PDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNET 263
Query: 309 LSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEE 367
L P R+T MFSAT+P + E A+ +NDP+ + + + + + ++C ++
Sbjct: 264 LHRL--PSSRQTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDD 321
Query: 368 GKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
+ L + ++F + + + + L ++ +++ R
Sbjct: 322 RYTALVVLLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTA 381
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+F + + LI TDV ARG+D ++ V+N P + +VH
Sbjct: 382 KFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVH 423
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 140 bits (352), Expect = 7e-33
Identities = 102/369 (27%), Positives = 178/369 (47%), Gaps = 19/369 (5%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FED F + LL + E + +P+PIQ SI + L +D++A A G+GKT A+ IP
Sbjct: 45 FED----FCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIP 100
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
++++I ++ ++I PT+ELA Q C +L+ I L
Sbjct: 101 VIEKI--QPALKAIQAMVIVPTRELALQTSQICVELSKHIQLK-------VMVTTGGTDL 151
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
+ ++I+TP R++ ++++ + K L+ DEADKL + F D +++
Sbjct: 152 RDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLIN 211
Query: 311 SCTDPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGK 369
P R+ M +SAT P+ V Q M+ P + + +E + + Q F E+ K
Sbjct: 212 FL--PKERQVMLYSATFPNTVTSFMQKHMHKPYEINL-MEELTLLGVTQYYAFV-QEKQK 267
Query: 370 LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERF 429
+ + L + + IIF S R + L ++ + IH++ Q R+++ F
Sbjct: 268 VHCLNTLFRKLQINQS-IIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDF 326
Query: 430 KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTK 489
+ G+ L+C+D+L RG+D + VN+VIN+D PR+A+ Y+H AI T
Sbjct: 327 RQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITY 386
Query: 490 QDSLAIKPI 498
+D ++ I
Sbjct: 387 EDRHTLRRI 395
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 140 bits (352), Expect = 7e-33
Identities = 101/350 (28%), Positives = 170/350 (47%), Gaps = 24/350 (6%)
Query: 158 PIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG-----LIISPT 212
PIQ + + RDMI A TG+GKTLAF IP++ +II G +G L+++PT
Sbjct: 129 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG-RGRNPLCLVLAPT 187
Query: 213 KELANQI---FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
+ELA Q+ F E + + I L P+ + D+ + TP
Sbjct: 188 RELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQL------------DYGVDVAVGTPG 235
Query: 270 RLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSN 329
R+I +++ ALNL +V+ ++ DEAD++ F E + IL + + MFSAT+PS
Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR-QSMMFSATMPSW 294
Query: 330 VEEIAQTIMNDPIRV-IIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII 388
+ + + +N+P+ V ++G + + + G+ I LV E I+
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F ++ A L + L + +H + +Q QR++ + F+ G L+ TDV ARG+D
Sbjct: 355 FTQTKRDADRLSYALA-RSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLD 413
Query: 449 FKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
V+L+I+Y++P + + +VH AI Y++ S A+K I
Sbjct: 414 VPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 140 bits (352), Expect = 7e-33
Identities = 105/365 (28%), Positives = 170/365 (45%), Gaps = 14/365 (3%)
Query: 130 SFEDLITRFQ---FDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
S++D+ F + LL + F +P+ IQ I D+I A +G+GKT
Sbjct: 33 SYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 187 FLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXX 246
F +LQQ+ D + + + L+++PT+ELA QI L + YL K V
Sbjct: 93 FCSGVLQQL--DFSLIQCQALVLAPTRELAQQIEKVMRALGD--YLGVKVHACVGGTSVR 148
Query: 247 XXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTD 306
I + +++ TP R+ +++ ++L +K + DEAD++ + F +Q
Sbjct: 149 EDQR-----ILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIY 203
Query: 307 DILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE 366
DI P ++ +FSAT+P EI + M+ P+R+++ E I Q V E
Sbjct: 204 DIFQ-LLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262
Query: 367 EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKII 426
E KL + L E +IF+ + + L ++ V H + Q RD I+
Sbjct: 263 EWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIM 321
Query: 427 ERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
F+SG LI TD+LARG+D + V+LVIN+D+P + Y+H AI F
Sbjct: 322 REFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINF 381
Query: 487 YTKQD 491
T+ D
Sbjct: 382 VTRDD 386
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 139 bits (351), Expect = 9e-33
Identities = 103/407 (25%), Positives = 188/407 (45%), Gaps = 14/407 (3%)
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
+V G+ V + F D + + LL +++ F P+ +Q E IP + D++ A
Sbjct: 34 DVKGSYVSIHSSGFRDFLLK----PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQA 89
Query: 178 PTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRP 237
+G GKT F++ LQQ+ + T + L++ T+ELA QI E + + Y+
Sbjct: 90 KSGMGKTAVFVLATLQQL--EPVTGQVSVLVMCHTRELAFQISKEYERFSK--YMPN--- 142
Query: 238 LQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF 297
++VA V+ ++ I++ TP R++ + + ++LNL +KH I DE DK+
Sbjct: 143 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 202
Query: 298 DKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINID 357
++ + + + T + MFSAT+ + + + M DP+ + + + ++
Sbjct: 203 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL 262
Query: 358 QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAER 417
QQ + K + L+ EF V+IF++S+ R AL L+ IH
Sbjct: 263 QQYYVKLKDNEKNRKLFDLLDVLEFNQ-VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 418 TQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXX 477
Q +R ++FK L+ T++ RG+D + VN+ NYD+P + Y+H
Sbjct: 322 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 381
Query: 478 XXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREK 524
AITF + ++ I + +V + +SE +I S E+
Sbjct: 382 GTKGLAITFVSDENDAKI--LNDVQDRFEVNISELPDEIDISSYIEQ 426
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 139 bits (351), Expect = 9e-33
Identities = 116/423 (27%), Positives = 203/423 (47%), Gaps = 55/423 (13%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
++ L +++F TP+Q+ +IP+L +D+ A TGSGKTLAF++PL++ I+ T+
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRSTSFP 85
Query: 204 LK-----GLIISPTKELANQI------FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXX 252
K G+IISPT+EL+ QI F+ N + L R ++
Sbjct: 86 PKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKA-----------D 134
Query: 253 XXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSS 311
+I E+ +++I TP RL +++ E L+ ++ LI DEAD+L + F Q + I+S
Sbjct: 135 MKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISR 194
Query: 312 CTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG-- 368
P R+T +FSAT VEE+A+ + +P+RV + K + + QQL G
Sbjct: 195 L--PKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESS--QQLTNSKTPSGLH 250
Query: 369 ----------KLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL------NVDV 412
K + L+++ K ++ F+ T A + L+ K+ ++
Sbjct: 251 LEYMECEADKKSSQLVDLLIKNSDKKLIVFFM---TCASVDYWGLVLSKIPALKSISLIP 307
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXX 472
IH + Q RDK + F L+CTDV ARG+D G++ V+ YD P+ + H
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAG 367
Query: 473 XXXXXXXXXKAITFYTKQDS-----LAIKPIINVMKQSGCEVSEWMQKISSMSKREKESL 527
+AI F ++ + I+ + ++ + S+ + I S + +++ +
Sbjct: 368 RTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAAMKDRAVM 427
Query: 528 KKG 530
+KG
Sbjct: 428 EKG 430
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 139 bits (350), Expect = 1e-32
Identities = 97/349 (27%), Positives = 168/349 (47%), Gaps = 8/349 (2%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F LL ++++ F P+ +Q E IP + D+I A +G GKT F++ LQQI
Sbjct: 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-- 108
Query: 198 DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS 257
+ + + L++ T+ELA QI E + + YL + V+ ++
Sbjct: 109 EPSPGQVSALVLCHTRELAYQICNEFVRFST--YLPDTK---VSVFYGGVNIKIHKDLLK 163
Query: 258 EDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL 317
+ I++ TP R++ + +E+ L+L V+H I DE DK+ + + + + T
Sbjct: 164 NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
+ MFSAT+ + + + M DP+ + + + ++ Q +E K + L+
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLL 283
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCL 437
+F V+IF++S++RA L L+ IH+ +Q +R + FK G L
Sbjct: 284 DALDFNQ-VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRIL 342
Query: 438 ICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
+ TD++ RG+D + VN+VINYD+P SA Y+H AITF
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 139 bits (349), Expect = 2e-32
Identities = 111/401 (27%), Positives = 195/401 (47%), Gaps = 53/401 (13%)
Query: 143 RLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT- 201
RL + EN F + T +Q + IP +L +D++ +PTG+GKT+AFL P+L I + K
Sbjct: 14 RLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRG 73
Query: 202 -VGLKGLIISPTKELANQIF---------IECSKLANKIYLDKKRPLQVAXXXXXXXXXX 251
G+ ++I+PT+ELA QI EC I D KR
Sbjct: 74 RPGVTAVVITPTRELALQIREVAGLFDVKCECFIGGMSIEEDYKR--------------- 118
Query: 252 XXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSS 311
++++ I + TP RL+ +V +E + HL+ DEADKL F E+ +L+
Sbjct: 119 -----MKEEFSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAK 173
Query: 312 CTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKL 370
P R T +FSAT +V+++++ + +P+ + +G+ E + + + + E KL
Sbjct: 174 L--PRNRVTGLFSATRNDSVDKLSRVFLRNPVSINVGNNE---MPVALEYIVVSPME-KL 227
Query: 371 IAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL---NVDVIHAERTQVQRDKIIE 427
+ + +V I+F + + F L + N+ IH + +Q +R+++ E
Sbjct: 228 LVLMDIVTGRR----CIVFFATCSEVD--FFSGLVSRAGFGNICKIHGKISQDERNRVYE 281
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFY 487
F D L CTDV ARG+DF+GV+LV+++DVP+ + VH +++ F
Sbjct: 282 EFFQRD-GLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFV 340
Query: 488 TKQDSLAIKPIINVMKQSGCEVSEWMQKI-SSMSKREKESL 527
+ + + +K G E ++ SS+S ++ +S+
Sbjct: 341 MPNE----RAYVEFLKLKGIPAVESSYRMKSSLSYQDIKSM 377
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 139 bits (349), Expect = 2e-32
Identities = 103/346 (29%), Positives = 167/346 (47%), Gaps = 15/346 (4%)
Query: 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKE 214
+P+ IQ ++P L +D+I A TGSGKT AF IP+LQ +++ L+++PT+E
Sbjct: 66 KPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFC--LVLTPTRE 123
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITV 274
LA QI + L + I L +A + + II++TP RL+
Sbjct: 124 LAFQIGQQFEALGSGIGL-------IAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDH 176
Query: 275 VQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEE 332
++ + NL +K LI DEAD++ + F + D IL P R+T +FSAT+ V +
Sbjct: 177 LENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVI--PRERRTYLFSATMTKKVSK 234
Query: 333 IAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLES 392
+ + + DP RV + + N+ Q +F N+ + + +L I+F +
Sbjct: 235 LERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLV--YLLNEHAGNSAIVFCAT 292
Query: 393 ITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGV 452
+ L + +H + +Q +R + +FKS L+CTDV ARG+D V
Sbjct: 293 CATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHV 352
Query: 453 NLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
++VINYD+P ++ YVH AIT T+ D A + I
Sbjct: 353 DMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 139 bits (349), Expect = 2e-32
Identities = 101/368 (27%), Positives = 172/368 (46%), Gaps = 31/368 (8%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FED + + LL + E F +P+PIQ ESIPI L D++A A G+GKT AF IP
Sbjct: 156 FEDYFLK----RDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIP 211
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
L++I + + + +I+ PT+ELA Q C +L+ K ++V
Sbjct: 212 TLEKIDPENNVI--QAVILVPTRELALQTSQVCKELS------KYLKIEVMVTTGGTSLR 263
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
+ + + +++ TP R++ + ++ L L+ DEADKL F ++++
Sbjct: 264 DDIMRLYQPVH-LLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQ 322
Query: 311 SCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRV-------IIGHKEAANINIDQQLVFC 363
+ + MFSAT P V+ + P + ++G + ++Q V C
Sbjct: 323 FLPESR-QILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVHC 381
Query: 364 GNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRD 423
N + I Q IIF S+ R + L ++ + IHA+ Q R+
Sbjct: 382 LNTLFSKLQINQS----------IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRN 431
Query: 424 KIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKA 483
++ F++G L+CTD+ RG+D + VN+VIN+D PR++++Y+H A
Sbjct: 432 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLA 491
Query: 484 ITFYTKQD 491
+ T +D
Sbjct: 492 VNLVTYED 499
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 139 bits (349), Expect = 2e-32
Identities = 103/359 (28%), Positives = 164/359 (44%), Gaps = 11/359 (3%)
Query: 133 DLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLL 192
D + LL + F +P+ IQ I D+I A +G+GKT F +L
Sbjct: 41 DSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVL 100
Query: 193 QQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXX 252
QQ+ D + V + L+++PT+ELA QI L + YL K V
Sbjct: 101 QQL--DISLVQCQALVLAPTRELAQQIEKVMRALGD--YLGVKAQACVGGTSVREDQR-- 154
Query: 253 XXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSC 312
+ + +++ TP R+ +++ ++L +K + DEAD++ + F +Q DI
Sbjct: 155 ---VLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLL 211
Query: 313 TDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIA 372
++ +FSAT+P EI + MN P+R+++ E I Q V EE KL
Sbjct: 212 PSK-VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLET 270
Query: 373 IRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSG 432
+ L E +IF+ + + L ++ V H + Q RD I+ F+SG
Sbjct: 271 LCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 329
Query: 433 DLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQD 491
LI TD+LARG+D + V+LVIN+D+P + Y+H AI F T +D
Sbjct: 330 SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 138 bits (348), Expect = 2e-32
Identities = 97/349 (27%), Positives = 168/349 (47%), Gaps = 8/349 (2%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F LL ++++ F P+ +Q E IP + D+I A +G GKT F++ LQQI
Sbjct: 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-- 108
Query: 198 DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS 257
+ + + L++ T+ELA QI E + + YL + V+ ++
Sbjct: 109 EPSPGQVSALVLCHTRELAYQICNEFVRFST--YLPDTK---VSVFYGGVNIKIHKDLLK 163
Query: 258 EDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL 317
+ I++ TP R++ + +E+ L+L V+H I DE DK+ + + + + T
Sbjct: 164 NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
+ MFSAT+ + + + M DP+ + + + ++ Q +E K + L+
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLL 283
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCL 437
+F V+IF++S++RA L L+ IH+ +Q +R + FK G L
Sbjct: 284 DALDFNQ-VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRIL 342
Query: 438 ICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
+ TD++ RG+D + VN+VINYD+P SA Y+H AITF
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 138 bits (348), Expect = 2e-32
Identities = 104/414 (25%), Positives = 193/414 (46%), Gaps = 15/414 (3%)
Query: 104 TKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSES 163
T+ A++ +++ + +V G V + F D + + +L +++ F P+ +Q E
Sbjct: 16 TETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLK----PEILRAIVDCGFEHPSEVQHEC 71
Query: 164 IPILLHERDMIACAPTGSGKTLAFLIPLLQQII-NDKTTVGLKGLIISPTKELANQIFIE 222
IP + D++ A +G GKT F++ LQQ+ +D T + L++ T+ELA QI E
Sbjct: 72 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHV--LVMCHTRELAFQISKE 129
Query: 223 CSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNL 282
+ + + ++VA + I++ TP R++ +++ + LNL
Sbjct: 130 YERFSKYM-----PTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNL 184
Query: 283 GKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPI 342
+KH + DE DK+ ++ + + + T + MFSAT+ ++ + + M DP+
Sbjct: 185 KLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPM 244
Query: 343 RVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHE 402
V + + ++ QQ E K + +L+ EF V+IF++S+ R AL
Sbjct: 245 EVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQ-VVIFVKSVQRCVALSQL 303
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L IH TQ +R ++FK L+ T++ RG+D + VN+V NYD+P
Sbjct: 304 LTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPE 363
Query: 463 SAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKI 516
+ Y+H AITF + ++ I + V + +SE ++I
Sbjct: 364 DSDTYLHRVARAGRFGTKGLAITFVSDENDAKI--LNEVQDRFDVNISELPEEI 415
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 138 bits (347), Expect = 3e-32
Identities = 100/347 (28%), Positives = 169/347 (47%), Gaps = 19/347 (5%)
Query: 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKE 214
EPT IQ I +L R+ I A TGSGKT AF +P++++ D + G+ LI++PT+E
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPS--GIFALILTPTRE 86
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITV 274
LA QI + + L + L K L V + + ++++TP RL +
Sbjct: 87 LAIQIDEQFAALGANLNL--KHALIVGGMDMIRQS-----IDLSKRPHVVVATPGRLADL 139
Query: 275 V----QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSN 329
+ +E L ++K L+ DEAD+L TF + DD S R+T+ F+AT+
Sbjct: 140 IRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDA 199
Query: 330 VEEIA-QTIMNDPIRVIIGHKEAANINI----DQQLVFCGNEEGKLIAIRQLVLEGEFKP 384
+ ++ Q N+ + + E NI++ Q +F ++ + + L + K
Sbjct: 200 IRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKK 259
Query: 385 PVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLA 444
IIF+ A+ ++ L +L V +H+E Q +R + RF++ L+ TDV +
Sbjct: 260 SAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVAS 319
Query: 445 RGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQD 491
RG+D V LVIN+D+PR Y+H ++I+ T++D
Sbjct: 320 RGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 137 bits (346), Expect = 3e-32
Identities = 104/361 (28%), Positives = 170/361 (46%), Gaps = 23/361 (6%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + F +P+ IQ +I ++ RD+IA + +G+GKT F I +LQ + D
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL--DIQVRE 106
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISED--KY 261
+ LI++PT+ELA QI + LA Y++ + + + ED K
Sbjct: 107 TQALILAPTRELAVQI--QKGLLALGDYMNVQCHACIGGTN-----------VGEDIRKL 153
Query: 262 D----IIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL 317
D ++ TP R+ +++ +L +K L+ DEAD++ +K F EQ D+ P
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PAT 212
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
+ + SAT+P + E+ M DPIR+++ E I Q V EE K + L
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCL 437
+ +IF + + L ++ V +H + Q +R+ I++ F+SG L
Sbjct: 273 -DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 438 ICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKP 497
I TDV ARG+D V+L+INYD+P + + Y+H AI F D ++
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 391
Query: 498 I 498
I
Sbjct: 392 I 392
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 137 bits (346), Expect = 3e-32
Identities = 104/359 (28%), Positives = 175/359 (47%), Gaps = 41/359 (11%)
Query: 141 DKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKT 200
D + + + F +PTPIQ ++IP ++ +D++A + TGSGKT AF+IP+LQ++ T
Sbjct: 32 DHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDT 91
Query: 201 TVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDK 260
T G++ L++SPT+ELA Q F +L + L+ A I E+
Sbjct: 92 T-GIRALMVSPTRELALQTFKVVKELG------RFTGLRCACLVGGDQIEEQFSTIHENP 144
Query: 261 YDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT 320
DI+++TP RL+ V+ E L L V++++FDEAD+LF+ F +Q + L P R+T
Sbjct: 145 -DILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRI--PESRQT 201
Query: 321 M-FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL--- 376
+ FSAT+P + + A+ + DP+ V + E + + C +E KL A+ L
Sbjct: 202 LLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDE-KLFALLHLCRN 260
Query: 377 -----VLEGEFKP---------------------PVIIFLESITRAKALFHELLYDKLNV 410
+LE K ++F ++ + + L ++
Sbjct: 261 FCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDC 320
Query: 411 DVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
++++ R I++F L+ TDV ARGVD ++ VIN P A+ +VH
Sbjct: 321 SFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVH 379
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 137 bits (345), Expect = 4e-32
Identities = 113/410 (27%), Positives = 199/410 (47%), Gaps = 31/410 (7%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESI-PILLHE-RDMIACAPTGSGKTLAF 187
+ + L+ DK + + F TP+Q ++I PIL E D+IA A TG+GKT AF
Sbjct: 103 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 162
Query: 188 LIPLLQQIINDK--TTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXX 245
LIP+ Q +IN K + +K +I++PT++LA QI E K+ + Y KK
Sbjct: 163 LIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKK--YACVSLVG 220
Query: 246 XXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK-VKHLIFDEADKLFDKTFVEQ 304
+++ + +I+I+TP RLI V+++ + + V + + DEAD+L + F +
Sbjct: 221 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 280
Query: 305 TDDIL------SSCTDPHLRKTMFSATIPSNVEEIAQTIMNDP----IRVIIGHKEAANI 354
+ I +S + +++ +FSAT+ V+++A IMN + + ++ A+
Sbjct: 281 LETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 340
Query: 355 NIDQQLVFCGNEEGKLIA----IRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNV 410
IDQ +V + A I++ + E + IIF ++ + + +L ++
Sbjct: 341 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTV-KFTSFLCSILKNEFKK 399
Query: 411 DV----IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQA 466
D+ H + TQ +R +++RFK + L+CTDV ARG+DF V+ V+ VP
Sbjct: 400 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELAN 459
Query: 467 YVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI-----INVMKQSGCEVSE 511
Y+H ++ F K + ++ + I + KQ E SE
Sbjct: 460 YIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSE 509
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 137 bits (344), Expect = 6e-32
Identities = 129/424 (30%), Positives = 202/424 (47%), Gaps = 34/424 (8%)
Query: 123 SVPLPI-GSFEDLITRFQFDKRLLNN-----LIENNFTEPTPIQSESIPILLHERDMIAC 176
S+PL + G+FED T F L+N + E FT T IQ +SI LL RD++A
Sbjct: 165 SLPLGLTGAFED--TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAA 222
Query: 177 APTGSGKTLAFLIPLLQQIINDK--TTVGLKGLIISPTKELANQIFIECSKLANKIYLDK 234
A TGSGKTLAFLIP ++ I+ + T G LI+SPT+ELA Q F +L
Sbjct: 223 AKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELMT------ 276
Query: 235 KRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGK-VKHLIFDEA 293
+ + +II++TP RL+ +Q + K ++ L+ DEA
Sbjct: 277 -HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 335
Query: 294 DKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSNVEEIAQ-TIMNDPIRVIIGHKEA 351
D++ D F E+ I+ P R+TM FSAT VE++A+ ++ +P+ V + +
Sbjct: 336 DRILDVGFEEELKQIIKLL--PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DK 392
Query: 352 ANINID---QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL 408
AN +D Q V C +E+ L+ L+ K +++F S K + L Y L
Sbjct: 393 ANATVDGLEQGYVVCPSEKRFLLLFT--FLKKNRKKKLMVFFSSCMSVKYHYELLNYIDL 450
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
V IH ++ Q +R +F + D L+CTDV ARG+D V+ ++ YD P + Y+
Sbjct: 451 PVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYI 510
Query: 469 HXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEW---MQKISSMSKREKE 525
H + + L + +KQS +SE+ KIS + + ++
Sbjct: 511 HRVGRTARGLNGRGHALLILRPEELG---FLRYLKQSKVPLSEFDFSWSKISDIQSQLEK 567
Query: 526 SLKK 529
++K
Sbjct: 568 LIEK 571
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 137 bits (344), Expect = 6e-32
Identities = 102/352 (28%), Positives = 172/352 (47%), Gaps = 28/352 (7%)
Query: 158 PIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGL----KGLIISPTK 213
PIQ + + RDMI A TG+GKTLAF IP++ +II G + L+++PT+
Sbjct: 141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTR 200
Query: 214 ELANQI---FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY--DIIISTP 268
ELA Q+ F E + + I L P+ + E Y D+ + TP
Sbjct: 201 ELARQVEKEFRESAPSLDTICLYGGTPI--------------GQQMRELNYGIDVAVGTP 246
Query: 269 LRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIP 327
R+I +++ ALNL +V+ ++ DEAD++ F E + IL P R++M FSAT+P
Sbjct: 247 GRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL--PAKRQSMMFSATMP 304
Query: 328 SNVEEIAQTIMNDPIRV-IIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPV 386
S + + + +N+P+ + ++G + + + G+ I LV E
Sbjct: 305 SWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKC 364
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
I+F ++ A L L + +H + +Q QR++ + F+ G+ L+ TDV ARG
Sbjct: 365 IVFTQTKRDADRLAFGLA-KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARG 423
Query: 447 VDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
+D V+LVI+Y++P + + +VH AI + + + A+K I
Sbjct: 424 LDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMI 475
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 135 bits (341), Expect = 1e-31
Identities = 119/472 (25%), Positives = 211/472 (44%), Gaps = 28/472 (5%)
Query: 105 KQDALKLRKSYQGNVSGNSVPLPIGSFEDL----ITRFQ---FDKRLLNNLIENNFTEPT 157
K+ K K + V S+ + ++E + ITRF K+ L L E + T
Sbjct: 34 KKQLRKQLKKPEWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVT 93
Query: 158 PIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQI--INDKTTVGLKGLIISPTKEL 215
IQ ++I + L +D++ A TGSGKTLAFL+P+L+ + + +T GL LIISPT+EL
Sbjct: 94 EIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTREL 153
Query: 216 ANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV 275
A Q F K+ K I + +I++ TP RL+ +
Sbjct: 154 AYQTFEVLRKVG------KNHDFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHM 205
Query: 276 QEE-ALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEEI 333
E + + ++ L+ DEAD++ D F + + ++ + P R+T +FSAT +V+++
Sbjct: 206 DETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL--PKKRQTLLFSATQTKSVKDL 263
Query: 334 AQTIMNDPIRVIIGHKE--AANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLE 391
A+ + +P V + K + ++Q + C E + I++ L K I+F
Sbjct: 264 ARLSLKNPEYVWVHEKAKYSTPATLEQNYIVC--ELQQKISVLYSFLRSHLKKKSIVFFS 321
Query: 392 SITRAKALFHEL--LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDF 449
S + L+ L +++ +H + Q++R ++ F L TD+ ARG+DF
Sbjct: 322 SCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDF 381
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEV 509
VN V+ +D P A Y+H +A+ + ++ ++ K E+
Sbjct: 382 PAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQ-KKVPVKEI 440
Query: 510 SEWMQKISSMSKREKESLKKGKGHVERKQISTVPXXXXXXXXXXXEMIEASK 561
+K+ + K+ + L + + ER Q V E+ + SK
Sbjct: 441 KINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSK 492
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 135 bits (341), Expect = 1e-31
Identities = 98/381 (25%), Positives = 173/381 (44%), Gaps = 26/381 (6%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FED + + LL + E F P+PIQ ESIPI L RD++A A G+GKT AF IP
Sbjct: 133 FEDYFLK----RELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIP 188
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
+L++I D + ++ T ++ + L K +QV
Sbjct: 189 VLEKIDQDNNVIQ-GNCVLDHTSQVCKE-------------LGKHLKIQVMVTTGGTSLK 234
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILS 310
+ + + +++ TP R++ + ++ L L+ DEADKL + F + ++S
Sbjct: 235 DDIMRLYQPVH-LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 293
Query: 311 SCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKL 370
+ + MFSAT P V++ + +P +I + + Q E K+
Sbjct: 294 FLPESR-QILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYAFVEERQKI 350
Query: 371 IAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFK 430
+ L + + IIF S+ R + L ++ + IHA+ Q R+++ F+
Sbjct: 351 HCLNTLFSKLQINQS-IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR 409
Query: 431 SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQ 490
+G L+CTD+ RG+D + VN+VIN+D P++A+ Y+H A+ T +
Sbjct: 410 NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYE 469
Query: 491 DSLAIKPIINVMKQSGCEVSE 511
D + + ++ G E+ +
Sbjct: 470 DRF---NLYRIEQELGTEIKQ 487
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 134 bits (338), Expect = 3e-31
Identities = 117/411 (28%), Positives = 196/411 (47%), Gaps = 38/411 (9%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FEDL + D+R+ L EN F +Q + IP+ L D+I + TG+GKTLAFL+P
Sbjct: 6 FEDL----KIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVP 61
Query: 191 LLQQIIN--DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXX 248
LQ++++ GL L+I+PT+ELA QIF S++A L +
Sbjct: 62 TLQRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVL--------STGLIMGG 113
Query: 249 XXXXXXVISEDKYDIIISTPLRLITVVQEEA-LNLGKVKHLIFDEADKLFDKTFVEQTDD 307
++ ++ +I++ TP RL+ +QE L+ V+ LI DEADK+ + F E +D
Sbjct: 114 LEAEDELLKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLED 173
Query: 308 ILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNE 366
IL P ++T +FSAT ++ I + + DP R+I +KE + +Q +
Sbjct: 174 ILEYI--PQKKQTLLFSATPKASTARILK--LEDP-RIISIYKEEGFPSQLRQYFYMMRT 228
Query: 367 EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL----NVDVIHAERTQVQR 422
K+ + + ++ F T + FH LL+++L + + +Q QR
Sbjct: 229 GDKINYLHTFIGSNPEVKGIVFF---STCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQR 285
Query: 423 DKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXK 482
+ +RF L CTD+ +RG+DF V++VI YD P + + YVH +
Sbjct: 286 IDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGE 345
Query: 483 AITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSM-SKREKESLKKGKG 532
+ + + K + ++ K+ W++K M K E + +G G
Sbjct: 346 SYVYLVHGEE---KLLTDIQKKG------WIKKQEGMEDKGISEEITEGPG 387
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 134 bits (336), Expect = 5e-31
Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 49/367 (13%)
Query: 141 DKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKT 200
++ LL + + F PTPIQ ++IP+LL RD++ A TGSGKT AF+IP+++ + +
Sbjct: 77 NQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA 136
Query: 201 TVGLKGLIISPTKELANQIFIECSKLANKIYLD--KKRPLQVAXXXXXXXXXXXXXVISE 258
+ LI+SP +ELA Q K+ D K L+ ++S
Sbjct: 137 NSNTRALILSPNRELALQTV--------KVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS- 187
Query: 259 DKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLR 318
K DI+++TP R + + E L L +++++FDEAD+LF+ F Q +IL + P R
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHAL--PTSR 245
Query: 319 KT-MFSATIPSNVEEIAQTIMNDP--IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQ 375
+T +FSAT+P + + A+ + DP +R+ + K +A++ V E L+ I Q
Sbjct: 246 QTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQ 305
Query: 376 LVLEGEFKPPV---------------------------------IIFLESITRAKALFHE 402
+++ K V ++F+ + + +
Sbjct: 306 DIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSEL 365
Query: 403 LLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPR 462
L+ +V I+ Q R I F+ G L+ TDV +RG+D + VINYD P
Sbjct: 366 LVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPP 425
Query: 463 SAQAYVH 469
+ +VH
Sbjct: 426 QPKVFVH 432
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 132 bits (333), Expect = 1e-30
Identities = 100/381 (26%), Positives = 175/381 (45%), Gaps = 14/381 (3%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQI-- 195
F +L + + F P+ +Q E IP + D++ A +G GKT F+I LQQ+
Sbjct: 46 FLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEP 105
Query: 196 INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
++ + +V + + T+ELA QI E + + YL ++VA
Sbjct: 106 VDGEVSV----VCMCHTRELAFQISKEYERFSK--YLPG---VKVAVFFGGMAIKKDEER 156
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDP 315
++ D I++ TP R++ + + L L KVK+ + DE DK+ + + + T
Sbjct: 157 LANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQ 216
Query: 316 HLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQ 375
+ MFSAT+P + + + M DP+ V + + ++ QQ E K +
Sbjct: 217 QKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLN 276
Query: 376 LVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLW 435
L+ EF V+IF++++ R +AL L IH + Q +R + FK
Sbjct: 277 LLDALEFNQ-VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKR 335
Query: 436 CLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
L+ TD+ RG+D + VN+V NYD+P + +Y+H AITF + ++
Sbjct: 336 ILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDEND--A 393
Query: 496 KPIINVMKQSGCEVSEWMQKI 516
K + +V + ++E +KI
Sbjct: 394 KTLNSVQDRFDISITELPEKI 414
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 132 bits (331), Expect = 2e-30
Identities = 111/412 (26%), Positives = 198/412 (47%), Gaps = 42/412 (10%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
++ L + F TP+Q+E+IP L +D++ A TGSGKTLAFL+P ++ I +
Sbjct: 27 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
Query: 204 ----LKGLIISPTKELANQI------FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXX 253
+ G+IISPT+EL+ QI F+ N + L R ++
Sbjct: 87 KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEA-----------DM 135
Query: 254 XVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSC 312
+ E+ +++I TP RL +++ E L+ ++ LI DEAD+L D F +Q + I+S
Sbjct: 136 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 195
Query: 313 TDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIG--HKEAANINIDQQLVFCGNEEGK 369
P R+T +FSAT V ++A+ + + + VI G K + + + + C ++ K
Sbjct: 196 --PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQ-K 252
Query: 370 LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKL------NVDVIHAERTQVQRD 423
+ L++E + K V+ F+ T A + L+ K+ + H + Q RD
Sbjct: 253 SSQLVHLLIENKNKKLVVFFM---TCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRD 309
Query: 424 KIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKA 483
+ F L+CTDV ARG+D G++ V+ YD P+ ++H +A
Sbjct: 310 TALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRA 369
Query: 484 ITFYTKQDS-----LAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKG 530
I F +++ + I+ + ++ S+ + I S++ +++ L+KG
Sbjct: 370 IVFLMPKETDYVEFMRIRRVPLQERKCSENASDVIPIIRSLAIKDRAVLEKG 421
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 131 bits (330), Expect = 2e-30
Identities = 95/389 (24%), Positives = 187/389 (47%), Gaps = 18/389 (4%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + + + P+P+Q SIP +L ++++ + G+GKT ++++P+L I + + +
Sbjct: 119 LLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMI--NSSELS 176
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
++G+I+ P +ELA QI +++ + ++ + + +
Sbjct: 177 IQGIILVPIRELALQISRNVKRMSEGTGV-------ISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 264 IISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFS 323
++ TP R++ +V++ L K L+FDEADKL D TF E +L + ++S
Sbjct: 230 MVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLD-LLPREKQMLLYS 288
Query: 324 ATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFK 383
AT P V + M +P+ + + KE A + + Q + E KL+ ++ L+L
Sbjct: 289 ATFPYFVTGFIRRYMKNPLCINL-MKELAPVGVKQFYTYVKPSE-KLLCLKSLLLRLSIN 346
Query: 384 PPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVL 443
+IF SI + L ++ L IH++ Q R+ + F G L+ TD++
Sbjct: 347 Q-CVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLI 405
Query: 444 ARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
RGVD N VIN+D+ +S ++Y+H AI+ T ++ + ++++
Sbjct: 406 TRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEK---EMLMDIEA 462
Query: 504 QSGCEVSEWMQKISSMSKREKESLKKGKG 532
+ G E+S K +S+ + ++ + +G
Sbjct: 463 KLGKEISPLSDK--GLSRLHESNIDRNQG 489
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 131 bits (330), Expect = 2e-30
Identities = 98/350 (28%), Positives = 164/350 (46%), Gaps = 11/350 (3%)
Query: 142 KRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
+ LL + F +P+ IQ I D+I A +G+GKT F +LQQ+ D
Sbjct: 48 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL--DYAL 105
Query: 202 VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
+ + L+++PT+ELA QI K+ L + ++V ++ +
Sbjct: 106 LQCQALVLAPTRELAQQI----EKVMRA--LGDYQGVKVHACVGGTSVREDQRILQAGVH 159
Query: 262 DIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM 321
+++ TP R+ +++ ++L +K + DEAD++ + F +Q DI P ++ +
Sbjct: 160 -VVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIF-QLLPPKIQVGV 217
Query: 322 FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGE 381
FSAT+P EI + M+ P+R+++ E I Q V E+ KL + L E
Sbjct: 218 FSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDL-YETL 276
Query: 382 FKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTD 441
+IF+ + + L ++ V H + Q RD I+ F+SG LI TD
Sbjct: 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 336
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQD 491
+LARG+D + V+LVIN+D+P + Y+H AI F T D
Sbjct: 337 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 386
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 131 bits (329), Expect = 3e-30
Identities = 101/397 (25%), Positives = 186/397 (46%), Gaps = 35/397 (8%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP----LLQQIINDK 199
L +NL PTPIQ S ++H D++ACA TGSGKTLAFLIP L+++ D+
Sbjct: 747 LHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDR 806
Query: 200 TTVGLKG----LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
K LI++PT+EL NQ F +L + L +
Sbjct: 807 DVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCG-----LAFGGYSRNANVQHL 861
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKT-FVEQTDDILSSCTD 314
S + +I+++T RL V ++L K+K+++ DEAD++ D F E+ I+ S +
Sbjct: 862 RSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGE 921
Query: 315 PHLRKTMFSATIPSNV--EEIAQTIMNDPIRVIIGHKEAANINIDQQLV----------- 361
+ +FSA+ ++ +++ + + + + AN IDQ+++
Sbjct: 922 RTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAI 981
Query: 362 --FCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQ 419
G +E + + +E K +IF+ S+ L + ++ +H+ + Q
Sbjct: 982 YKLLGIDENTVTLLPDAPIE---KQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQ 1038
Query: 420 VQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP--RSAQAYVHXXXXXXXX 477
QRD+ ++ F+ G C++ ++V ARG++ G++ V+NYD+P YV+
Sbjct: 1039 EQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRA 1098
Query: 478 XXXXKAITFYTKQDSLAIKP-IINVMKQSGCEVSEWM 513
+ F ++ I P +++++ ++ EV EW+
Sbjct: 1099 GFTGTSTAFVDVENDTDIIPCLVSILNEAKKEVPEWL 1135
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 131 bits (329), Expect = 3e-30
Identities = 100/373 (26%), Positives = 178/373 (46%), Gaps = 21/373 (5%)
Query: 150 ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLII 209
E +PTP+Q+ +P +L RD++ A TGSGKT AF +P+L ++ D G+ L++
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVFALVV 132
Query: 210 SPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
+PT+ELA Q+ + L + + L + + I+I+TP
Sbjct: 133 TPTRELAFQLAEQFKALGSCLNLR-------CSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 270 RLITVVQEEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATI 326
R+ +++ + K L+ DEAD++ D F ++ I C + +FSAT+
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQ-CLPKSRQTLLFSATM 244
Query: 327 PSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV-LEGEFKPP 385
SN++ + + N + QQ +F + +L + L +E +
Sbjct: 245 TSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRS 304
Query: 386 VIIFLESITRAKALFHELLYDKLNVDVI--HAERTQVQRDKIIERFKSGDLWCLICTDVL 443
+IF+ + + L L+ D+L V+ I H+ +Q R + +FKSG + L+ TDV
Sbjct: 305 AMIFVSTCRTCQRL--SLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVA 362
Query: 444 ARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
+RG+D V+LVINYD+PR + YVH A++ T+ D +K I + +
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETD---VKLIHKIEE 419
Query: 504 QSGCEVSEWMQKI 516
+ G ++ + +K+
Sbjct: 420 EVGKKMEPYNKKV 432
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 131 bits (329), Expect = 3e-30
Identities = 109/358 (30%), Positives = 172/358 (47%), Gaps = 38/358 (10%)
Query: 137 RFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII 196
+F K+ L E+ F PT +Q +SI L +D++ A TGSGKTLAFLIP+L+ +
Sbjct: 76 QFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF 135
Query: 197 NDK--TTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXX 254
+K T G+ +IISPT+ELA QIF K+ + D L +
Sbjct: 136 MNKWSRTDGVGAIIISPTRELAYQIFETLKKVGK--HHDFSAGLIIGGKNLKFERTRM-- 191
Query: 255 VISEDKYDIIISTPLRLITVVQEEAL-NLGKVKHLIFDEADKLFDKTFVEQTDDILSSCT 313
D+ +I+I TP RL+ + E L N ++ L+ DEAD+ D F + + I+ +
Sbjct: 192 ----DQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENF- 246
Query: 314 DPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIG-----------HKEAANI------N 355
P +R+T +FSAT + V+++A+ + DP+ V G K+ N
Sbjct: 247 -PPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPE 305
Query: 356 IDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLN----VD 411
+ QQ N E K+ + + + K +I+F+ S +AK L+ ++ KL +
Sbjct: 306 LLQQSYVVLNLEDKITMLWSFI-KNHLKQKIIVFVASCKQAKYLYE--IFCKLRPGSPLL 362
Query: 412 VIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
++ Q +R I E F + TDV +RG+DF VN V+ D P Y+H
Sbjct: 363 ALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIH 420
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 130 bits (327), Expect = 5e-30
Identities = 107/347 (30%), Positives = 172/347 (48%), Gaps = 24/347 (6%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FED F R L L +N++T+PT IQ ++I L D++ A TGSGKTLA +IP
Sbjct: 78 FED----FPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIP 133
Query: 191 LLQQIINDKTT--VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXX 248
+L+ + K + GL LIISPT+ELA Q F + + + L +
Sbjct: 134 VLEALWRAKWSPDYGLGALIISPTRELALQTFSTINAVG--AHHGFSCGLVIGGSDVAFE 191
Query: 249 XXXXXXVISEDKYDIIISTPLRLITVVQEEA-LNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+ +II+ TP RL+ + E A ++ ++ L+ DEAD++ D F +Q +
Sbjct: 192 RNRISGI------NIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNS 245
Query: 308 ILSSCTDPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANI--NIDQQLVFCG 364
I+++ P R+T+ FSAT NV+++ + NDP+ V + +A N+ Q V
Sbjct: 246 IINNL--PAERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIV- 302
Query: 365 NEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDK 424
EE K+ A+ + E K ++F+ S +A+ L + + V+ T Q+ +
Sbjct: 303 EEEHKINALWSFI-EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKR 361
Query: 425 I--IERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
I +F LI TDV +RG+DF+ ++ VI D P Y+H
Sbjct: 362 IETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIH 408
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 129 bits (325), Expect = 9e-30
Identities = 103/349 (29%), Positives = 166/349 (47%), Gaps = 19/349 (5%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH--ERDMIACA 177
SG++ FEDL + K L +E F +P+ IQ+ S+P+++ + +IA A
Sbjct: 82 SGDTPYTSASRFEDLNLSPELMKGLY---VEMKFEKPSKIQAISLPMIMTPPHKHLIAQA 138
Query: 178 PTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRP 237
GSGKT F++ +L ++ D T + L I PT+ELANQ K+ +
Sbjct: 139 HNGSGKTTCFVLGMLSRV--DPTLREPQALCICPTRELANQNMEVLQKMGK--FTGITAE 194
Query: 238 LQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF 297
L V +S ++I TP L + + L L +K L+FDEAD +
Sbjct: 195 LAVPDSTRGAPAATRGAPVSAH---VVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHML 251
Query: 298 DKTFVEQTDDILSSCTD-----PHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAA 352
DD L D P+ + +FSAT V++ + DP ++ + ++ A
Sbjct: 252 ATDGFR--DDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLA 309
Query: 353 NINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDV 412
++ Q V C E+ K+ I+ ++E IIF+++ A+ + L +V
Sbjct: 310 LDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTS 369
Query: 413 IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
+H T+ RDKI++ FK LI TDV+ARG D + VNLV+NY++P
Sbjct: 370 VHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLP 418
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 129 bits (324), Expect = 1e-29
Identities = 115/418 (27%), Positives = 191/418 (45%), Gaps = 30/418 (7%)
Query: 142 KRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
K L +L T+PT IQ IP +L RD I A TGSGKT+AF P+L + D +
Sbjct: 11 KWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPS- 69
Query: 202 VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
G+ G++++PT+ELA QI + + L + + + + + K
Sbjct: 70 -GMFGVVLTPTRELAMQIAEQFTALGSSMNIR-------VSVIVGGESIVQQALDLQRKP 121
Query: 262 DIIISTPLRLITVVQEEALN----LGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHL 317
II+TP RL + + L + K+L+ DEAD L TF + +S+
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK 181
Query: 318 RKTM-FSATIPSNVEEI--AQTIMNDPIRVIIGHKEAANINIDQQL---VFCGNEEGKLI 371
R+T+ F+ATI V+ + A P + N+ I L E K
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEA 241
Query: 372 AIRQLVLEGEFK-PPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFK 430
+ QL+ E++ IIF+ A+ L L ++ V +H++ Q +R + RF+
Sbjct: 242 YLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFR 301
Query: 431 SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQ 490
+ LI TDV +RG+D V LV+NYD+P ++H AI+F T++
Sbjct: 302 ANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQR 361
Query: 491 DSLAIKPIINVMKQSGCEVSE------WMQKISSMSKREKESL----KKGKGHVERKQ 538
D I+ I + + + E ++ + ++ ++K ++ESL K+ G +R+Q
Sbjct: 362 DVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQ 419
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 129 bits (324), Expect = 1e-29
Identities = 104/366 (28%), Positives = 176/366 (47%), Gaps = 22/366 (6%)
Query: 110 KLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLH 169
+++KS N S S I F DL Q + + + E F T IQ SIP LL
Sbjct: 73 RVQKSVNLNASSTS---DIEKFSDL----QLSENIQKAIKEMGFETMTEIQKRSIPPLLA 125
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQI--INDKTTVGLKGLIISPTKELANQIFIECSKLA 227
RD++ A TGSGKTLAFLIP ++ + + K G +IISPT+ELA QIF +L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 228 NKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVK 286
Y + + + ++ ++++TP RL+ +Q + ++
Sbjct: 186 K--YHHQTFGIVIGGANRRAEADKLVKGVN-----LLVATPGRLLDHLQNTKGFVFRNLR 238
Query: 287 HLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQ-TIMNDPIRVI 345
L+ DEAD++ + F ++ I+ + + +FSAT + VE++A+ ++ P+ V
Sbjct: 239 SLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVN 298
Query: 346 I--GHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHEL 403
+ G + ++Q V +++ L+ L+ K VI+F+ S K + L
Sbjct: 299 VDSGKPTSTVEGLEQGYVVVDSDKRFLLLFS--FLKRNLKKKVIVFMSSCASVKYMAELL 356
Query: 404 LYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
Y L V +H ++ Q +R F + + L+CT+V ARG+D V+ ++ YD P
Sbjct: 357 NYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDD 416
Query: 464 AQAYVH 469
+ Y+H
Sbjct: 417 PRDYIH 422
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 128 bits (322), Expect = 2e-29
Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 10/375 (2%)
Query: 117 GNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIAC 176
G+ G+ V + F+D + + + + + I+ F P+ +Q +IP +H D++
Sbjct: 50 GDKKGSYVGIHSTGFKDFLLKPELSRAI----IDCGFEHPSEVQQHTIPQSIHGTDVLCQ 105
Query: 177 APTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKR 236
A +G GKT F++ LQQ+ D + ++I +ELA QI E + + K D K
Sbjct: 106 AKSGLGKTAVFVLSTLQQL--DPVPGEVAVVVICNARELAYQIRNEYLRFS-KYMPDVKT 162
Query: 237 PLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKL 296
+ + I+++TP RL +V+E+ ++L VK+ + DE DK+
Sbjct: 163 AVFYGGTPISKDAELLKN--KDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKV 220
Query: 297 FDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
++ + + + T + MFSAT+ + I + + +P+ + + + ++
Sbjct: 221 LEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG 280
Query: 357 DQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAE 416
QQ E K + QL+ + EF VIIF++S TRA L L +H
Sbjct: 281 LQQYYIKLEEREKNRKLAQLLDDLEFNQ-VIIFVKSTTRANELTKLLNASNFPAITVHGH 339
Query: 417 RTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXX 476
Q +R + FK + + TDV RG+D + +NL INYD+ A Y+H
Sbjct: 340 MKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGR 399
Query: 477 XXXXXKAITFYTKQD 491
AI+F + ++
Sbjct: 400 FGTKGLAISFVSSKE 414
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 128 bits (322), Expect = 2e-29
Identities = 106/361 (29%), Positives = 175/361 (48%), Gaps = 41/361 (11%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F +L +L + F++P PIQS IP D+I A TGSGKTLAF IP+L+ +
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 198 DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRP-LQVAXXXXXXXXXXXXXVI 256
+ ++ L+++PT+ELA+QI L K P ++V ++
Sbjct: 187 NVDAKYVQALVVAPTRELAHQI-------CQHFELIKPSPNIRVMSITGGLAVQKQQRLL 239
Query: 257 SEDKYDIIISTPLRLITVVQEEAL--NLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTD 314
++ + ++++TP RL +V+ E L N K+K L+ DEAD+L K+ E+ +L +
Sbjct: 240 NKHPH-VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGN 298
Query: 315 P-HLRKT--MFSATIPSNVEEIAQTIM--------NDPIRVII--------------GHK 349
P H ++ +FSAT +++ + M N P+ ++ +
Sbjct: 299 PMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQ 358
Query: 350 EAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII-FLESITRAKALFHELLYDKL 408
A + + L+ C E K + + L++ K V +E I R +EL K+
Sbjct: 359 SAVASRVLEGLIECAPAE-KDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNEL---KV 414
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
+HA+ Q +R + +E+FK+ L+CTDV ARG+D V VI+Y VP +A YV
Sbjct: 415 PSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYV 474
Query: 469 H 469
H
Sbjct: 475 H 475
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 128 bits (322), Expect = 2e-29
Identities = 98/377 (25%), Positives = 177/377 (45%), Gaps = 21/377 (5%)
Query: 126 LPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTL 185
+P+ E + F + + L T PIQ+++ + +D+IA A TG+GKT
Sbjct: 111 IPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTF 170
Query: 186 AFLIPLLQQIIND----KTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVA 241
+F IPL++++ + K + L+++PT+ELANQ+ +K + D + L VA
Sbjct: 171 SFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQV--------SKDFSDITKKLSVA 222
Query: 242 XXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTF 301
+ + DI++ TP R+ +Q L+L K+KH++ DE D++ D F
Sbjct: 223 CFYGGTPYGGQFERM-RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGF 281
Query: 302 VEQTDDILSSC----TDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVI--IGHK-EAANI 354
+Q ++ILS ++ + + +FSAT P V +A+ M + IG K + I
Sbjct: 282 ADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAI 341
Query: 355 NIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIH 414
++ + C + + + + + IIF E+ A+ L K + +H
Sbjct: 342 TVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI-KQDAQSLH 400
Query: 415 AERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXX 474
+ Q QR+ ++ F++G L+ T+V ARG+D V+LVI P+ ++Y+H
Sbjct: 401 GDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRT 460
Query: 475 XXXXXXXKAITFYTKQD 491
I FY ++
Sbjct: 461 GRAGRTGVCICFYQHKE 477
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 128 bits (322), Expect = 2e-29
Identities = 96/371 (25%), Positives = 172/371 (45%), Gaps = 21/371 (5%)
Query: 132 EDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPL 191
E + F + + L T PIQ ++ + +D+IA A TG+GKT +F IPL
Sbjct: 136 EGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 192 LQQIINDKTTV----GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXX 247
++++ ++ T+ K L+++PT+ELANQ+ K + D R L VA
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQVA--------KDFKDITRKLSVACFYGGT 247
Query: 248 XXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
I + DI++ TP R+ +Q L+L K++H++ DE D++ D F EQ +D
Sbjct: 248 SYQSQINHI-RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVED 306
Query: 308 ILSSC----TDPHLRKTMFSATIPSNVEEIAQTIMN---DPIRVIIGHKEAANINIDQQL 360
I+ ++ + + +FSAT P V ++A+ M + + ++ + A ++
Sbjct: 307 IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLA 366
Query: 361 VFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQV 420
+ C + + L + + IIF E+ + + K N +H + Q
Sbjct: 367 IQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNP-HIKQNAQCLHGDIAQS 425
Query: 421 QRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXX 480
QR+ ++ F+ G L+ T+V ARG+D V+LVI P+ ++Y+H
Sbjct: 426 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRT 485
Query: 481 XKAITFYTKQD 491
I FY ++
Sbjct: 486 GICICFYQPRE 496
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 128 bits (322), Expect = 2e-29
Identities = 102/379 (26%), Positives = 175/379 (45%), Gaps = 29/379 (7%)
Query: 127 PIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
PI SF+D+ + ++L + + + +P+ IQ ++ +L RD+IA A +G+GKT
Sbjct: 20 PIKSFDDM----GMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSM 75
Query: 187 FLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXX 246
I + Q I+N + ++ L++SP++ELA+Q +K A
Sbjct: 76 IAISVCQ-IVNISSRK-VQVLVLSPSRELASQT-------------EKTIQAIGAHTNIQ 120
Query: 247 XXXXXXXXVISEDKYDI------IISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKT 300
I ED + + TP R+ +++ +L VK L+ DE+D++ K
Sbjct: 121 AHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKG 180
Query: 301 FVEQTDDILSSCTDPH-LRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQ 359
+Q D+ + PH ++ + SAT+P + E+ + M DP+R+++ E I Q
Sbjct: 181 LKDQIYDVYRAL--PHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQY 238
Query: 360 LVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQ 419
V EE K + L IIF + + L ++ V +H ++ Q
Sbjct: 239 YVDVDKEEWKFDTLCDLYGRLTINQ-AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQ 297
Query: 420 VQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXX 479
+RD I+ +F+S LI +DV ARG+D + V+ VINYD+P + + Y+H
Sbjct: 298 KERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGR 357
Query: 480 XXKAITFYTKQDSLAIKPI 498
AI F D +K I
Sbjct: 358 EGVAINFVKSSDMKDLKDI 376
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 128 bits (321), Expect = 3e-29
Identities = 103/388 (26%), Positives = 184/388 (46%), Gaps = 22/388 (5%)
Query: 150 ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLII 209
E + P+ IQ E+IP+ L +D+I A TGSGKT AF +P+L ++ + L++
Sbjct: 78 ELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR--YFALVL 135
Query: 210 SPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
+PT+ELA QI + L + I + + K III+TP
Sbjct: 136 TPTRELAFQIGEQFEALGSGIGIK-------CCVVVGGMDMVAQGLQLAKKPHIIIATPG 188
Query: 270 RLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIP 327
RL+ ++ + NL +K+L+ DEAD++ + F + D IL P R+T +FSAT+
Sbjct: 189 RLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVL--PRERRTFLFSATMT 246
Query: 328 SNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVI 387
V+++ + + DP++V + +K + Q +F + + + +L +
Sbjct: 247 KKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVH--ILNELAGNSFM 304
Query: 388 IFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGV 447
IF + L L +H + +Q +R + +FK+ + LI TDV +RG+
Sbjct: 305 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 364
Query: 448 DFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQS-- 505
D V++V+N+D+P ++ Y+H KAIT ++ D + I +++ +
Sbjct: 365 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLT 424
Query: 506 --GCEVSEWM---QKISSMSKREKESLK 528
CE E M ++++ + K LK
Sbjct: 425 LYKCEEDEVMALQERVAEAQRTAKLELK 452
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 125 bits (315), Expect = 1e-28
Identities = 99/380 (26%), Positives = 189/380 (49%), Gaps = 26/380 (6%)
Query: 176 CAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKK 235
CA TG+GKTLAF IP+LQ++ D G+ LI++PT+ELA QI + + L I
Sbjct: 189 CARTGTGKTLAFAIPILQKLSVDP--YGIYALILTPTRELAFQIAEQFTALGKPI----- 241
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKV----KHLIFD 291
L+ + +SE + ++++TP RL +++ + + KV + + D
Sbjct: 242 -TLKCSVIVGGRSLIHQARELSERPH-VVVATPGRLADLIESDPDTIAKVFKKIQFFVLD 299
Query: 292 EADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHK-- 349
EAD++ + + +Q I S ++ + + SATI +N+ + + P K
Sbjct: 300 EADRMLEGQYNDQLKPIFESISEKR-QTLLLSATITNNINMLHRVSTRKPYFFEDKGKDD 358
Query: 350 EAANINIDQQLVFC--GNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDK 407
E+ ++Q+ V C ++ L+ + + E K V+IF ++ +AL +
Sbjct: 359 ESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLG 418
Query: 408 LNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAY 467
V +H++ Q QR + F+S L +ICTDV +RG+D V+LV+N++VP+ + Y
Sbjct: 419 FRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTY 478
Query: 468 VHXXXXXXXXXXXXKAITFYTKQDSLAIKPI-------INVMKQSGCEVSEWMQKISSMS 520
+H A++F T+ D ++ + ++ +K S V++++ ++ ++
Sbjct: 479 IHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQV-LVA 537
Query: 521 KREKESLKKGKGHVERKQIS 540
K+E E + + E+K+I+
Sbjct: 538 KKEAELKLENQKFGEKKEIN 557
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 125 bits (315), Expect = 1e-28
Identities = 106/338 (31%), Positives = 173/338 (50%), Gaps = 30/338 (8%)
Query: 145 LNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGL 204
L + E FTE T IQS+S+ LL RD++ A TGSGKTLAFLIP ++ +IN +
Sbjct: 182 LRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVE-LINKLRFMPR 240
Query: 205 KG---LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
G +IISPT+EL+ Q F +L + + +K
Sbjct: 241 NGTGVIIISPTRELSMQTFGVLKELMAHHH-----------HTYGLVMGGSNRQVESEKL 289
Query: 262 ----DIIISTPLRLITVVQEEALNLGK-VKHLIFDEADKLFDKTFVEQTDDILSSCTDPH 316
+I+++TP RL+ +Q L K ++ LI DE D++ + F E+ I++ P
Sbjct: 290 GKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLL--PK 347
Query: 317 LRKTM-FSATIPSNVEEIAQ-TIMNDPIRV-IIGHKEAANIN-IDQQLVFCGNEEGKLIA 372
R+TM FSAT + +E +++ + ++PI V + +++ A ++ ++Q + C +E+ L+
Sbjct: 348 RRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVL 407
Query: 373 IRQLVLEGEFKPPVIIFLESITRAKALFHELL-YDKLNVDVIHAERTQVQRDKIIERFKS 431
L+ K V++F S K HEL Y L V IH ++ Q +R +F +
Sbjct: 408 FT--FLKKNRKKKVMVFFSSCMSVK-YHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCN 464
Query: 432 GDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ L+CTDV ARG+D V+ ++ YD P + Y+H
Sbjct: 465 AESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH 502
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 125 bits (314), Expect = 2e-28
Identities = 95/326 (29%), Positives = 160/326 (48%), Gaps = 20/326 (6%)
Query: 152 NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV--GLKGLII 209
+F T IQ + IP L RD++ A TGSGKTLAF++PL++ + K T GL L+I
Sbjct: 58 HFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVI 117
Query: 210 SPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
SPT+ELA Q F K+ R + + +I++ TP
Sbjct: 118 SPTRELAIQTFETLVKIG--------RLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPG 169
Query: 270 RLITVVQEEALNLGK--VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIP 327
RL+ + ++A+N ++ LI DEAD++ D F D I+SS H + +FSAT
Sbjct: 170 RLLQHI-DQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLP-VHRQTMLFSATQT 227
Query: 328 SNVEEIAQTIMNDPIRVIIGHKEAANI--NIDQQLVFCGNEEGKLIAIRQLVLEGEFKPP 385
+V+++A+ + +P + + + ++ N++Q + E I + +FK
Sbjct: 228 KSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFK-- 285
Query: 386 VIIFLESITRAKALFHELLYDKLNVDVIH--AERTQVQRDKIIERFKSGDLWCLICTDVL 443
I+FL S + + ++ + + ++H ++ Q R ++ +F S L CTD++
Sbjct: 286 TIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIV 345
Query: 444 ARGVDFKGVNLVINYDVPRSAQAYVH 469
ARG+DF V+ VI D P Y+H
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIH 371
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 125 bits (313), Expect = 2e-28
Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 19/348 (5%)
Query: 128 IGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAF 187
+ FE+L + + L + + FT T +Q+ +IP LL RD++ A TGSGKTLAF
Sbjct: 41 VEKFEEL----KLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAF 96
Query: 188 LIPLLQQI--INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXX 245
LIP ++ + + K G ++I+PT+ELA QIF +A ++ + +
Sbjct: 97 LIPAIELLHSLKFKPRNGTGIIVITPTRELALQIF----GVARELMEFHSQTFGIVIGGA 152
Query: 246 XXXXXXXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQ 304
+ +++I+TP RL+ +Q + +K LI DEAD++ + F ++
Sbjct: 153 NRRQEAEKLMKG---VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDE 209
Query: 305 TDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDP---IRVIIGHKEAANINIDQQLV 361
I+ + + +FSAT + VE++A+ + I V+ + ++Q V
Sbjct: 210 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYV 269
Query: 362 FCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQ 421
C +++ L+ L+ K +I+FL S K L Y L V +H ++ Q +
Sbjct: 270 VCDSDKRFLLLFS--FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 327
Query: 422 RDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
R F + + LICTDV ARG+D V+ +I +D P + Y+H
Sbjct: 328 RTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIH 375
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 124 bits (312), Expect = 3e-28
Identities = 75/246 (30%), Positives = 139/246 (56%), Gaps = 14/246 (5%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F K +LNN+ F +PTPIQ ++IP++L RD++ A TGSGKT AF++P+++++ +
Sbjct: 142 FGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKS 201
Query: 198 DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV-I 256
+G + +I+SP++ELA Q F ++ D R ++ +
Sbjct: 202 HSGKIGARAVILSPSRELAMQTF--------NVFKDFARGTELRSVLLTGGDSLEEQFGM 253
Query: 257 SEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPH 316
D+II+TP R + + E L+L V++++FDEAD+LF+ F EQ +++L+S P
Sbjct: 254 MMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASL--PT 311
Query: 317 LRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGN--EEGKLIAI 373
R+T +FSAT+P+++ + + + +P+ V + + + N++ + N E L+ I
Sbjct: 312 TRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYI 371
Query: 374 RQLVLE 379
Q +++
Sbjct: 372 LQEIIK 377
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 124 bits (312), Expect = 3e-28
Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 13/313 (4%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + F +P+ IQ +IP +L RD+IA A +G+GKT F I +LQ + D
Sbjct: 37 LLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSL--DTQVRE 94
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
+ LI+SPT+ELA QI K+ L + V + D
Sbjct: 95 TQALILSPTRELAVQI--------QKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH 146
Query: 264 IIS-TPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMF 322
++S TP R+ +++ L +K L+ DEAD++ +K F EQ DI P + +
Sbjct: 147 VVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIY-RYLPPGAQVVLL 205
Query: 323 SATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEF 382
SAT+P + E+ M DPIR+++ E I Q V EE K + L +
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDL-YDTLT 264
Query: 383 KPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDV 442
++F + + L ++ V +H + Q RD++++ F++G LI TDV
Sbjct: 265 ITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDV 324
Query: 443 LARGVDFKGVNLV 455
ARG+D V+LV
Sbjct: 325 WARGLDVPQVSLV 337
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 124 bits (310), Expect = 5e-28
Identities = 101/371 (27%), Positives = 179/371 (48%), Gaps = 28/371 (7%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG------LKG 206
F TP+Q+ +IP+L +D++ + TGSGKT AF+IP+L++++ ++
Sbjct: 27 FETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHS 86
Query: 207 LIISPTKELANQI-FIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS--EDKYDI 263
LII+PT+EL+ QI + S L + Y P++ V + ++ I
Sbjct: 87 LIIAPTRELSRQIESVVLSFLEH--YPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQI 144
Query: 264 IISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MF 322
+I TP R++ +Q A+ ++ DEAD+L D +F++ T+ IL P R+T +F
Sbjct: 145 LIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLL--PKQRRTGLF 202
Query: 323 SATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFC-GNEEGKLIAIRQLVLEGE 381
SAT+ S +I +T + +P+R+ + K A ++ +L +C N KL + ++ +
Sbjct: 203 SATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSL--KLNYCVVNPAEKLQLLVSILNNYK 260
Query: 382 FKPPVIIFLESITRAKALF-------HELLYDKLNVDVIHAERTQVQRDKIIERF-KSGD 433
FK ++ F ++ + +L +++ + +H + R K + F S
Sbjct: 261 FKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLS 320
Query: 434 LWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYT---KQ 490
L TDV ARG+D V+LVI D P + ++H KAITF ++
Sbjct: 321 NSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREE 380
Query: 491 DSLAIKPIINV 501
D + + NV
Sbjct: 381 DFIPFMQVKNV 391
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 124 bits (310), Expect = 5e-28
Identities = 103/411 (25%), Positives = 178/411 (43%), Gaps = 34/411 (8%)
Query: 101 KIITKQDALKLRKSYQGNVSGNSVPLPIGSFE----DLITRFQFDKRLLNNLIENNFTEP 156
K ++D +K S + S V L + E + +++F+ L L N
Sbjct: 60 KASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEAL 119
Query: 157 TPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN----DKTTVGL----KGLI 208
PIQ+ + ++L D++ A TG GKTLAF++P+L+ ++N K +G L+
Sbjct: 120 FPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLV 179
Query: 209 ISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY----DII 264
+ PT+ELA Q+ + + L + E K DI+
Sbjct: 180 LLPTRELAKQVAADFDAYGGSLGLSS-----------CCLYGGDSYPVQEGKLKRGVDIV 228
Query: 265 ISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FS 323
+ TP R+ ++ + L+ ++ + DEAD++ FVE + IL D +T+ FS
Sbjct: 229 VGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFS 288
Query: 324 ATIPSNVEEIAQTIMNDPIRVI--IGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGE 381
AT+PS V+ I+ + + I +G+ + N + + N+ I ++
Sbjct: 289 ATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYS 348
Query: 382 FKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTD 441
IIF E+ + L L + +H E Q QR+ + F++G L+ T+
Sbjct: 349 SGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATN 404
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDS 492
V ARG+D V L+I + PR +AY+H A+T Y + S
Sbjct: 405 VAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 123 bits (308), Expect = 9e-28
Identities = 99/372 (26%), Positives = 170/372 (45%), Gaps = 45/372 (12%)
Query: 129 GSFEDLITRFQFDKRLLNNLIEN--NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
GSF DL + R+L+ L E +PT +QS +IP LL R ++ A TGSGKTL+
Sbjct: 126 GSFADL----GLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLS 181
Query: 187 FLIPLLQQIINDKTTVGL-----KGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVA 241
+L+PLLQ+++ + L +GL++ P++ELA Q+ L + L L
Sbjct: 182 YLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGL-----LVRD 236
Query: 242 XXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTF 301
+ + D++++TP L ++ ++L ++ L+ DEAD L D++F
Sbjct: 237 LEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESF 296
Query: 302 VEQTDDILSSC------------TDPHLRKTMFSATIPSNVEEI---------AQTIMND 340
+E D IL +P + + AT P V ++ TI +
Sbjct: 297 LELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSS 356
Query: 341 PIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPP---VIIFLESITRAK 397
+ I+ H + + + ++ +L+ I + E P V++F S +
Sbjct: 357 KLHCIMPHVKQTFLRLKG-----ADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVN 411
Query: 398 ALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVIN 457
L + L K+ + + + R I + F+ L+CTD+ +RG+D GV LV+N
Sbjct: 412 WLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVN 471
Query: 458 YDVPRSAQAYVH 469
YD P + Q Y+H
Sbjct: 472 YDFPPTLQDYIH 483
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 122 bits (305), Expect = 2e-27
Identities = 111/426 (26%), Positives = 190/426 (44%), Gaps = 48/426 (11%)
Query: 112 RKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHER 171
R+ + NV G PL + SFEDL T+ FD LL Q IP L +
Sbjct: 18 REELEYNVDGERHPL-LCSFEDLKTKVPFDSPLLT-------------QKVVIPYFLKKT 63
Query: 172 DMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANK-- 229
++I A TGSGKTL++ +PL++ L G I+ P K L Q++ ++ ++
Sbjct: 64 NVIVQAFTGSGKTLSYCLPLVEMARGRS----LFGAILVPGKPLVRQVYRVVREIKHEGL 119
Query: 230 ----IYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYD--------IIISTPLRLITVVQE 277
+Y D + V ++ ++I TP ++ ++
Sbjct: 120 KVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSM 179
Query: 278 EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTI 337
+ V HL+ DEAD L + V ILS + + FSAT+ V E+ +T+
Sbjct: 180 SEIR--NVTHLVIDEADLLINPETVGVFASILSVIEMEDIHISCFSATMNEYVSEVIETV 237
Query: 338 MN-DPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRA 396
+ IRV+ + ID + VF + + K +++ Q++ +G + P +IF++
Sbjct: 238 KSITKIRVV------SKRLIDHEFVFGTSRKIKHLSLLQIIADG-IESPTLIFVKDEKTG 290
Query: 397 KALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVI 456
+AL +L K V Q ++++ F+ +W L TD L+RG+DF + VI
Sbjct: 291 EAL--SMLLGKSAV----YREDQEGSGEVLDGFRLKKIWYLFTTDSLSRGIDFYNIRSVI 344
Query: 457 NYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKI 516
NYD+P + +VH K T Y+ +D I + ++++G EV + + +I
Sbjct: 345 NYDLPSTKTQFVHRIGRINRNCQGQKIYTIYSSEDFGRIGVVAEFLEENGHEVPKHITRI 404
Query: 517 SSMSKR 522
S+R
Sbjct: 405 IEKSRR 410
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 121 bits (304), Expect = 3e-27
Identities = 101/328 (30%), Positives = 165/328 (49%), Gaps = 26/328 (7%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQI--INDKTTVGLKGLIIS 210
FT T IQ++SI LL +D++A A TGSGKTLAFL+P ++ + +N K G +I+S
Sbjct: 88 FTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVS 147
Query: 211 PTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY----DIIIS 266
PT+EL+ Q + S+L L+ + +DK I+++
Sbjct: 148 PTRELSMQTYGVLSEL-----------LEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVA 196
Query: 267 TPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSA 324
TP RL+ +Q + + +K LI DEAD++ D F + +L P R++M FSA
Sbjct: 197 TPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHL--PKQRQSMLFSA 254
Query: 325 TIPSNVEEIAQTIMN-DPIRVIIGHK-EAANINIDQQLVFCGNEEGKLIAIRQLVLEGEF 382
T V+E+ + ++ +P+RV + K E A + QQ + +L+ + + + +
Sbjct: 255 THSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKT 314
Query: 383 KPPVIIFLESITRAKALFHELL-YDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTD 441
K V++F S K HELL Y + IH ++ Q +R +F + L+CTD
Sbjct: 315 KK-VMVFFSSCNSVK-FHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTD 372
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVH 469
V ARG+D V+ ++ YD + Y+H
Sbjct: 373 VAARGLDIPAVDWIVQYDPTDEPREYIH 400
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 121 bits (304), Expect = 3e-27
Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 21/328 (6%)
Query: 150 ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV--GLKGL 207
E F T IQ+ SI LL +D++ A TGSGKTLAFLIP ++ + ++ + G +
Sbjct: 106 EMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI 165
Query: 208 IISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIST 267
+I PT+ELA I+ +A ++ + + + + ++I+T
Sbjct: 166 VICPTRELA----IQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSN---LVIAT 218
Query: 268 PLRLITVVQEEALNLGK-VKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSAT 325
P RL+ +Q + K +K L+ DEAD++ ++ F E + IL P R+T +FSAT
Sbjct: 219 PGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKIL--PKTRQTALFSAT 276
Query: 326 IPSNVEEIAQTIMNDPIRVII--GHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFK 383
S V+++A+ + P+ V + G ++ N ++Q +++ ++ I L+
Sbjct: 277 QTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLIS--FLKKNLN 334
Query: 384 PPVIIFLESITRAKALFHELLYDKLNVDV--IHAERTQVQRDKIIERFKSGDLWCLICTD 441
+++F + + FH + +VDV IH Q +R K F L+CTD
Sbjct: 335 KKIMVFFSTCKSVQ--FHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTD 392
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVH 469
V ARG+D V+ +I YD P Y+H
Sbjct: 393 VAARGLDIPSVDWIIQYDPPDKPTEYIH 420
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 121 bits (304), Expect = 3e-27
Identities = 115/405 (28%), Positives = 192/405 (47%), Gaps = 31/405 (7%)
Query: 153 FTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQ--QIINDKTTVGLK---GL 207
F + TP+Q+ +IP+LL +D+ A A TGSGKTLAFL+P+L+ Q + +T G K L
Sbjct: 27 FQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIGAL 86
Query: 208 IISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIST 267
+ISPT+ELA QI LA + + L + + I++ T
Sbjct: 87 VISPTRELARQI---SEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCT 143
Query: 268 PLRLITVVQEEA--LNLG----KVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT- 320
P RL + Q + LNL ++ L+ DEAD+L D F ++IL P R+T
Sbjct: 144 PGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYL--PRQRRTG 201
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINID---QQLVFCGNEEGKLIAIRQ-L 376
+FSAT + V ++ + + +P V++ KE A++N Q E K +A+ + L
Sbjct: 202 LFSATQTTEVTDLIRAGLRNP--VLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFL 259
Query: 377 VLEGEFKPPVIIFLESITRAKALFHEL--LYDKLNVDVIHAERTQVQRDKIIERFKSGDL 434
V++F + + L L K V IH + + +R ++E+F++
Sbjct: 260 SSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHG-KMKNKRANVVEKFRNTPQ 318
Query: 435 WCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLA 494
L+CTDVLARG+D + V+ +D P +A ++VH A+ F +
Sbjct: 319 AVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSED-- 376
Query: 495 IKPIINVMK-QSGCEVSEWMQKISSMSKREKESLKKGKGHVERKQ 538
++ +K E+++ + + + + REK+ L + R Q
Sbjct: 377 --AYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQ 419
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 121 bits (304), Expect = 3e-27
Identities = 102/378 (26%), Positives = 177/378 (45%), Gaps = 29/378 (7%)
Query: 120 SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPT 179
S + P + +FE+L + + LLN L NNF PT IQ+ +IP+ L + D+I + +
Sbjct: 16 SSDVAPGQVKTFEEL----RLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKS 71
Query: 180 GSGKTLAFLIPLLQQI---INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKR 236
G+GKTL ++I ++Q IN +I+ PT+ELA Q+ L R
Sbjct: 72 GTGKTLIYVIAVVQSFNPNINQP-----HAMIVVPTRELAIQVQDTFFHLCKSF-----R 121
Query: 237 PLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKL 296
+ + ++E + +II TP RL+ + + ++ K++ L+ DEAD+L
Sbjct: 122 DFKCSAFIGGTDVAKDRKRMNESR--VIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQL 179
Query: 297 FDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
+ ++ T L + + SAT N++E +M+ P+ +I + E A + +
Sbjct: 180 YQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPM--LISNSERATVLL 237
Query: 357 D-QQLVFCGNEEGKLIAIRQLVLE--GEF-----KPPVIIFLESITRAKALFHELLYDKL 408
+Q V+ ++ + +L L+ G+ IIF S RA + + L +
Sbjct: 238 GIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGI 297
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
+ +I Q +R + E +++ + L+ TD++ARGVD NLVIN D P+ Y+
Sbjct: 298 DCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYL 357
Query: 469 HXXXXXXXXXXXXKAITF 486
H AITF
Sbjct: 358 HRIGRAGRFGSKGIAITF 375
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 121 bits (303), Expect = 3e-27
Identities = 101/397 (25%), Positives = 182/397 (45%), Gaps = 79/397 (19%)
Query: 143 RLLNNLIENNFTEPTPIQSESIPILLHER----------DMIACAPTGSGKTLAFLIPLL 192
+L+ L + N T +Q+ +P+LL + D+ A TGSGKTL+++IP++
Sbjct: 136 KLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIV 195
Query: 193 QQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXX 252
Q ++ +T L+ ++I PT+EL Q+ Y LQV
Sbjct: 196 Q-CLSHRTVPRLRCVVIVPTRELTVQVAKTFE------YYMSGAGLQVCAWTGQKSLRHE 248
Query: 253 XXVISED----KYDIIISTPLRLITVVQ-EEALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
++ D + D+++STP RL+ ++ +E+ +L +++++ DEAD+L D++F + D
Sbjct: 249 TYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDT 308
Query: 308 ILSSCTDPH----------------------------------LRKTMFSATIPSNVEEI 333
++ + P L+K +FSAT+ + +I
Sbjct: 309 VMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKI 368
Query: 334 AQTIMNDPIRVIIGHK-----EAANINIDQQLVF----------CGNEEGKLIAIRQLVL 378
A +++P V++ +K + I D +VF K I + L+
Sbjct: 369 ASLKLHNPRLVLVQNKDMEVDDGGEIE-DDAIVFSVPPTLQEYHVSVSSEKPILLYHLI- 426
Query: 379 EGEFKPPVIIFLES------ITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSG 432
+ ++ F++S + R L HE L + + + ++ +R KII RF +G
Sbjct: 427 HSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATG 486
Query: 433 DLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
DL L+C+D++ARG+D VINYD P S ++YVH
Sbjct: 487 DLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 121 bits (303), Expect = 3e-27
Identities = 103/369 (27%), Positives = 177/369 (47%), Gaps = 51/369 (13%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHER-DMIACAPTGSGKTLAFLIPLLQQII------ 196
+L + + F+EPT IQS +P + +R D++ A TGSGKTLAF IPL+ +++
Sbjct: 166 VLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDS 225
Query: 197 --NDKTTV-GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXX 253
+ T V G + LI++PT+EL QI + L + L
Sbjct: 226 QETESTEVRGPRALIVAPTRELVIQIMKHINALIS------TTQLIATSIVGGLAQVKQE 279
Query: 254 XVISEDKYDIIISTPLRLITVVQE----EALNLGK-VKHLIFDEADKLFDKTFVEQTDDI 308
+IS+ + DI+++TP RL ++QE E L K +K L+ DE D++ ++ + + I
Sbjct: 280 RIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHI 339
Query: 309 LSSCTD----PHLRKTMFSATI------------PSNVEEIAQTIMNDPIRVIIGHKEAA 352
L+ + L+ +FSAT+ +E++ + + G +E
Sbjct: 340 LNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENK 399
Query: 353 NINID------------QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALF 400
+ ID + + CGN K ++ L+ + I+F+ SI A+ L+
Sbjct: 400 HKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLT--RYPGRTIVFVNSIDAARRLY 457
Query: 401 HELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
L ++ ++HA+ Q QR K +E+F L+ TDV ARG+D +G++ VI+Y V
Sbjct: 458 SVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQV 517
Query: 461 PRSAQAYVH 469
P+ + Y+H
Sbjct: 518 PKKVEIYIH 526
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 120 bits (302), Expect = 4e-27
Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 14/317 (4%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
S E + F D RL + + F +PT +QSE+IP+ L +D++A A TGSGKT A+LI
Sbjct: 11 SSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLI 70
Query: 190 PLLQQIIN----DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKK-RPLQVAXXX 244
P+L+ ++ D+ G+ L++ PT+ELA Q++ KL + K R + VA
Sbjct: 71 PILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT--AFCSKHIRFINVA--- 125
Query: 245 XXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQ 304
+ D DI+I+TP R + V L L K+K L+ DEAD + + E
Sbjct: 126 -TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNED 184
Query: 305 TDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCG 364
LS + + SAT+ N+ + + + +P + + KEA+ + Q +V C
Sbjct: 185 M-KTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASG-KLTQYVVKCS 242
Query: 365 NEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDK 424
++ L+A L L K ++IF+ I R L L L V+++E R
Sbjct: 243 EQDKFLLAYILLKLR-LIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLH 301
Query: 425 IIERFKSGDLWCLICTD 441
I+E++ G +I TD
Sbjct: 302 ILEQYNKGLYQIIIATD 318
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 120 bits (302), Expect = 4e-27
Identities = 104/361 (28%), Positives = 173/361 (47%), Gaps = 23/361 (6%)
Query: 148 LIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV--GLK 205
L + + + T +QS +IP L RD++ A TGSGKTLAF+IP+L+++ ++ + G+
Sbjct: 86 LKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVG 145
Query: 206 GLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIII 265
+IISPT+ELA Q F + NK+ K + V + +I++
Sbjct: 146 CIIISPTRELAAQTF----GVLNKVGKFHKFSAGLLIGGREGVDVEKERV---HEMNILV 198
Query: 266 STPLRLITVVQEEA-LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSA 324
P RL+ + E +++ LI DEAD++ D F Q D I+S H + +FSA
Sbjct: 199 CAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ-LPKHRQTLLFSA 257
Query: 325 TIPSNVEEIAQTIMNDPIRVIIGHKEA--ANINIDQQLVFCGNEEGKLIAIRQLVLEGEF 382
T V+++A+ + DP + + H EA A Q V E KL + + +
Sbjct: 258 TQTKKVKDLARLSLRDPEYISV-HAEAVTATPTSLMQTVMIVPVEKKLDMLWSFI-KTHL 315
Query: 383 KPPVIIFLESITRAKALFHELLYDKLNVDV----IHAERTQVQRDKIIERFKSGDLWCLI 438
+++FL T+ + F ++KL + +H + +Q +R + +F L
Sbjct: 316 NSRILVFLS--TKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQS-VLF 372
Query: 439 CTDVLARGVDF-KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKP 497
CTDVLARG+DF K V+ V+ D P +Y+H K++ F T + I+
Sbjct: 373 CTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEK 432
Query: 498 I 498
+
Sbjct: 433 L 433
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 120 bits (300), Expect = 7e-27
Identities = 100/403 (24%), Positives = 184/403 (44%), Gaps = 38/403 (9%)
Query: 156 PTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN----------DKTTVGLK 205
P+ IQ+E++P L +D+I A TGSGKT AF IP+LQ ++ +
Sbjct: 32 PSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFF 91
Query: 206 GLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIII 265
++SPT+ELA QI + L I L+ A + + + +
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADI------SLRCAVLVGGIDRMQQTIALGKRPH---V 142
Query: 266 STPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFS 323
+TP RL + + + +L +K+L+ DEAD+L ++ F + + IL P RKT +FS
Sbjct: 143 ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI--PLERKTFLFS 200
Query: 324 ATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFK 383
AT+ V ++ + + +P+++ K + + QQ F + + +L +
Sbjct: 201 ATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLV--YILSEMPE 258
Query: 384 PPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVL 443
+IF + + L L I + TQ +R + +FK+G+ L+CTDV
Sbjct: 259 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 318
Query: 444 ARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMK 503
+RG+D V++VINYD+P +++ Y+H I+ + + ++ I + K
Sbjct: 319 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYE---LEWYIQIEK 375
Query: 504 QSGCEVSEW----------MQKISSMSKREKESLKKGKGHVER 536
G ++ E+ +++++ K ++K+ G R
Sbjct: 376 LIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRR 418
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 120 bits (300), Expect = 7e-27
Identities = 105/389 (26%), Positives = 177/389 (44%), Gaps = 62/389 (15%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
SFE+L D RL+ L + +PT IQ +IP +L +D++A A TGSGKTLA+L+
Sbjct: 47 SFEEL----GLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLL 102
Query: 190 PLLQQIIN----DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXX 245
PLLQ++ + K + I+ P++EL Q++ E S L + K +Q+
Sbjct: 103 PLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLK-AVQLTSSMS 161
Query: 246 XXXXXXXXXVISEDKYDIIISTPLRL----ITVVQEEALNLGKVKHLIFDEADKLFDKTF 301
+ E I++STP + V E + L+ DEAD L +
Sbjct: 162 ASDMRNALAGLPE----ILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGY 217
Query: 302 VEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVII----GHKEAANINID 357
+ + +S + + SAT S+VE++ + I+++PI + + +EA N+
Sbjct: 218 EDNLRSV-TSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQ 276
Query: 358 QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVD--VIHA 415
Q + C ++ KL+ I L+ + ++IF+ +I L +L +K + +++
Sbjct: 277 QFWISCSAQD-KLLHILALLKLEVVQKKILIFINTIDMGFRL--KLFLEKFGIKSAILNG 333
Query: 416 ERTQVQRDKIIERFKSGDLWCLICTD---------------------------------- 441
E Q R I+E+F +G LI TD
Sbjct: 334 ELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAE 393
Query: 442 -VLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ RG+DFK V+ VIN+D+P+S Y+H
Sbjct: 394 FGVVRGIDFKKVHTVINFDMPQSVTGYIH 422
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 119 bits (299), Expect = 1e-26
Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 20/328 (6%)
Query: 150 ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV--GLKGL 207
E F T IQ+++IP L+ D++ A TGSGKTLAFLIP ++ + K T G L
Sbjct: 171 EMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVL 230
Query: 208 IISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIST 267
+I PT+ELA Q + +L K Q I +++++T
Sbjct: 231 VICPTRELAIQSYGVAKELL-------KYHSQTVGKVIGGEKRKTEAEILAKGVNLLVAT 283
Query: 268 PLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSAT 325
P RL+ ++ +K L+ DEAD++ ++ F E IL+ P R+T +FSAT
Sbjct: 284 PGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLL--PKTRQTSLFSAT 341
Query: 326 IPSNVEEIAQTIMNDPIRVII--GHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFK 383
+ VE++A+ + P+ + + G KE N ++Q + +L+ + + + K
Sbjct: 342 QSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAM-RLLFLLTFLKRFQGK 400
Query: 384 PPVIIFLESITRAKALFHELLYDKLNVDV--IHAERTQVQRDKIIERFKSGDLWCLICTD 441
+++F + K FH L+ + D I Q +R +F + L+CT+
Sbjct: 401 KKIMVFFSTCKSTK--FHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTN 458
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVH 469
V ARG+DF V+ ++ YD P + Y+H
Sbjct: 459 VAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 116 bits (290), Expect = 1e-25
Identities = 107/414 (25%), Positives = 186/414 (44%), Gaps = 74/414 (17%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHE-RDMIACAPTGSGKTLAFLIPLLQQII 196
F D RLL + F PT IQS +IP+ L + RD+IA A TGSGKTLA+LIP+++ I+
Sbjct: 22 FHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIETIL 81
Query: 197 NDKTTV------GLKGLIISPTKELANQIFIECSKLANKIYLDKK-RPLQVAXXXXXXXX 249
K T+ G G+I+ PT+ELA Q++ KL +Y K R L ++
Sbjct: 82 EYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLV--LYCSKDIRTLNIS----SDMS 135
Query: 250 XXXXXVISEDKYDIIISTPLRLITVVQEE--ALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+ D+ +II+ TP +L+ ++Q + +++L ++K L+ DE D + + + +
Sbjct: 136 DSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNK 195
Query: 308 ILSSC-TDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFC--G 364
I +L+ + SAT+ +++ + Q P ++ + E N N ++ L +
Sbjct: 196 IGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSP-AILKFNDEEINKNQNKLLQYYVKV 254
Query: 365 NEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVD--VIHAERTQVQR 422
+E K + + K +IF+ +I R L +L+ ++ + ++++E R
Sbjct: 255 SEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRL--KLVMEQFGIKSCILNSELPVNSR 312
Query: 423 DKIIERFKSGDLWCLICTD----------------------------------------- 441
I+++F LI TD
Sbjct: 313 QHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKK 372
Query: 442 ---------VLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITF 486
++RGVDFK V V+N+D+P +A++YVH AI+F
Sbjct: 373 VQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISF 426
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 115 bits (289), Expect = 1e-25
Identities = 111/373 (29%), Positives = 177/373 (46%), Gaps = 25/373 (6%)
Query: 98 LSGKIITKQDALKLRKSYQGNVSGNSVPLP---IGSFEDLITRFQFDKRLLNNLIENNFT 154
L K I K+ +K+ K +V P I SF +L + +L L NF
Sbjct: 177 LLNKFIQKE--VKMMKDVVVDVQRQDPKSPLYSISSFREL----RLKPEVLKALDTMNFQ 230
Query: 155 EPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPT 212
PT IQ ++P+LL E ++IA A +G+GKT AF++ +L +I D + + + ++PT
Sbjct: 231 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI--DVNLMCPQCICLAPT 288
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
ELA QI K+ ++D + + A + + I+I TP
Sbjct: 289 LELAKQIGEVVEKMGK--FIDNLK-IHYAIKGGNMAAMRGRKLTEQ----IVIGTPGITR 341
Query: 273 TVVQE-EALNLGKVKHLIFDEAD-KLFDKTFVEQTDDILSSCTDPH--LRKTMFSATIPS 328
+Q+ + ++ K++ L+ DEAD ++ + F + + I + D ++ +FSAT
Sbjct: 342 DYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDE 401
Query: 329 NVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII 388
V A I+ + I V++ +E A NI Q V C + K AI L G +I
Sbjct: 402 PVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLY-SGLAVASSVI 460
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F + L+ + VDV+H + T V+R I FK GD LI T+V ARG+D
Sbjct: 461 FCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGID 520
Query: 449 FKGVNLVINYDVP 461
V++VINYD+P
Sbjct: 521 VAQVSVVINYDLP 533
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 115 bits (289), Expect = 1e-25
Identities = 111/373 (29%), Positives = 177/373 (46%), Gaps = 25/373 (6%)
Query: 98 LSGKIITKQDALKLRKSYQGNVSGNSVPLP---IGSFEDLITRFQFDKRLLNNLIENNFT 154
L K I K+ +K+ K +V P I SF +L + +L L NF
Sbjct: 202 LLNKFIQKE--VKMMKDVVVDVQRQDPKSPLYSISSFREL----RLKPEVLKALDTMNFQ 255
Query: 155 EPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPT 212
PT IQ ++P+LL E ++IA A +G+GKT AF++ +L +I D + + + ++PT
Sbjct: 256 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI--DVNLMCPQCICLAPT 313
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
ELA QI K+ ++D + + A + + I+I TP
Sbjct: 314 LELAKQIGEVVEKMGK--FIDNLK-IHYAIKGGNMAAMRGRKLTEQ----IVIGTPGITR 366
Query: 273 TVVQE-EALNLGKVKHLIFDEAD-KLFDKTFVEQTDDILSSCTDPH--LRKTMFSATIPS 328
+Q+ + ++ K++ L+ DEAD ++ + F + + I + D ++ +FSAT
Sbjct: 367 DYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDE 426
Query: 329 NVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII 388
V A I+ + I V++ +E A NI Q V C + K AI L G +I
Sbjct: 427 PVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLY-SGLAVASSVI 485
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F + L+ + VDV+H + T V+R I FK GD LI T+V ARG+D
Sbjct: 486 FCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGID 545
Query: 449 FKGVNLVINYDVP 461
V++VINYD+P
Sbjct: 546 VAQVSVVINYDLP 558
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 115 bits (289), Expect = 1e-25
Identities = 111/373 (29%), Positives = 177/373 (46%), Gaps = 25/373 (6%)
Query: 98 LSGKIITKQDALKLRKSYQGNVSGNSVPLP---IGSFEDLITRFQFDKRLLNNLIENNFT 154
L K I K+ +K+ K +V P I SF +L + +L L NF
Sbjct: 586 LLNKFIQKE--VKMMKDVVVDVQRQDPKSPLYSISSFREL----RLKPEVLKALDTMNFQ 639
Query: 155 EPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPT 212
PT IQ ++P+LL E ++IA A +G+GKT AF++ +L +I D + + + ++PT
Sbjct: 640 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI--DVNLMCPQCICLAPT 697
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
ELA QI K+ ++D + + A + + I+I TP
Sbjct: 698 LELAKQIGEVVEKMGK--FIDNLK-IHYAIKGGNMAAMRGRKLTEQ----IVIGTPGITR 750
Query: 273 TVVQE-EALNLGKVKHLIFDEAD-KLFDKTFVEQTDDILSSCTDPH--LRKTMFSATIPS 328
+Q+ + ++ K++ L+ DEAD ++ + F + + I + D ++ +FSAT
Sbjct: 751 DYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDE 810
Query: 329 NVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII 388
V A I+ + I V++ +E A NI Q V C + K AI L G +I
Sbjct: 811 PVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLY-SGLAVASSVI 869
Query: 389 FLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVD 448
F + L+ + VDV+H + T V+R I FK GD LI T+V ARG+D
Sbjct: 870 FCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGID 929
Query: 449 FKGVNLVINYDVP 461
V++VINYD+P
Sbjct: 930 VAQVSVVINYDLP 942
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 115 bits (287), Expect = 2e-25
Identities = 99/374 (26%), Positives = 164/374 (43%), Gaps = 31/374 (8%)
Query: 146 NNLIENNFTEPTPIQSESI-PILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG- 203
N+L F + TP+Q + + +E + + A TG+GKTLAFL+ + ++ K +
Sbjct: 51 NSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNS 110
Query: 204 --LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
+ +I+SPT+ELA QIF E KL ++V+ I
Sbjct: 111 SKIHSVILSPTRELALQIFEEARKLTYGT------GIRVSYAIGGNSKMREENAIRRGNA 164
Query: 262 DIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT 320
+++I+TP RL +Q L I DEAD+L D F E +I + T RK
Sbjct: 165 NLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKL 224
Query: 321 MFSATIPSNVEEIAQTIMNDPIRVII--------GHKEAANINIDQQL--VFCGNEEGKL 370
FSAT+P V + + I+ ++I H+ I+ +L VF +
Sbjct: 225 CFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSS----- 279
Query: 371 IAIRQLVLEGEFKPPVIIFLESITRAKALFHELL-YDKLNVDVIHAERTQVQRDKIIERF 429
+++ Q + +I+FL +I+ + L + K+ ++H+ T QR I E F
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESF 339
Query: 430 KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTK 489
+ L TDV+ARG+DF + V+ P + Y+H +A +
Sbjct: 340 RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLE 399
Query: 490 QDSLAIKPIINVMK 503
Q+ KP +N +K
Sbjct: 400 QE----KPFLNSIK 409
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 115 bits (287), Expect = 2e-25
Identities = 92/359 (25%), Positives = 166/359 (45%), Gaps = 32/359 (8%)
Query: 122 NSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHE--RDMIACAPT 179
NS + SFE+L + LL + F +P+ IQ +++P+LL R+MI + +
Sbjct: 107 NSPLFSVKSFEEL----ELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQS 162
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
G+GKT AF + +L ++ D + + + ++P++ELA QI +++ Y + K
Sbjct: 163 GTGKTAAFALTMLSRV--DASVPKPQAICLAPSRELARQIMDVVTEMGK--YTEVKTAFG 218
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK 299
+ I+I TP ++ +++ L+ +K + DEAD + D+
Sbjct: 219 IKDSVPKGAKIDA---------QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 269
Query: 300 TFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQ 359
+ + + + +FSAT VE+ A+ + + + +E + I Q
Sbjct: 270 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL 329
Query: 360 LVFCGNEEGK---LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAE 416
+ C +EE K L+ + L+ G+ IIF + A+ + + D V +
Sbjct: 330 YMDCQSEEHKYNVLVELYGLLTIGQS----IIFCKKKDTAEEIARRMTADGHTVACLTGN 385
Query: 417 RTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP------RSAQAYVH 469
QRD I++ F+ G L+ T+V+ARG+D VNLV+NYD+P Q Y+H
Sbjct: 386 LEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLH 444
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 114 bits (285), Expect = 4e-25
Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 29/359 (8%)
Query: 132 EDLITRFQFDKRLLNNLI-----ENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLA 186
+ +T+ +FD L+ L + + T +Q ++PI+L +D++A A TG+GKT+A
Sbjct: 48 DSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVA 107
Query: 187 FLIPLLQQIIN------DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQV 240
FL+P ++ ++ D + L+I PT+ELANQ E + L L + V
Sbjct: 108 FLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTL-----LKYHPSIGV 162
Query: 241 AXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEE---ALNLGKVKHLIFDEADKLF 297
+ + I+++TP RL ++ A L VK L+ DEAD L
Sbjct: 163 QVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLL 222
Query: 298 DKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
D F + + I+S+ P R+T +FSAT+P V +I + + I
Sbjct: 223 DMGFRKDIERIISAV--PKERQTFLFSATVPEEVRQICLVALRRD-HEFVNCVHEGTIET 279
Query: 357 DQQ------LVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNV 410
QQ + L + + + G VI+F + K + L LNV
Sbjct: 280 HQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNV 339
Query: 411 DVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
IH+ + Q R ++ F+ L+ +DV ARGVD+ V LV+ +P+ + Y+H
Sbjct: 340 REIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIH 398
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 113 bits (283), Expect = 7e-25
Identities = 89/360 (24%), Positives = 167/360 (45%), Gaps = 22/360 (6%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
LL + F +P+ IQ ++P+LLH R+MIA + +G+GKT AF + +L ++ + +
Sbjct: 103 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDAS 162
Query: 202 VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
+ + ++P++ELA Q ++ + + ++ I+
Sbjct: 163 P--QAICLAPSRELARQTL--------EVVQEMGKFTKITSQLIVPDSFEKNKQINAQ-- 210
Query: 262 DIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM 321
+I+ TP ++ +++ + + L K+K + DEAD + D+ + + + +
Sbjct: 211 -VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 269
Query: 322 FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGE 381
FSAT V + A+ I+ + + + E I Q + C NE K + +L
Sbjct: 270 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMT 329
Query: 382 FKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTD 441
IIF+ + A L+ +L + V ++H + +RD++I+ F+ G LI T+
Sbjct: 330 IGSS-IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 388
Query: 442 VLARGVDFKGVNLVINYDVPRSAQ------AYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
VLARG+D V++V+NYD+P A Y+H AI+F ++S I
Sbjct: 389 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNI 448
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 112 bits (281), Expect = 1e-24
Identities = 103/354 (29%), Positives = 156/354 (43%), Gaps = 42/354 (11%)
Query: 141 DKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII-NDK 199
DK L N + F + TP+Q+ +IP+ L +D++ A TGSGKTLA+L+P ++ D
Sbjct: 9 DKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDT 68
Query: 200 TTVGLKGLIISPTKELANQIFIECSKLA--NKIYLDKKRPLQVAXXXXXXXXXXXXXVIS 257
GL LI++PT+ELA QIF +L LD + L VA + S
Sbjct: 69 DETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKL-VADMYIGGKGTLTNDLAS 127
Query: 258 --EDKYDIIISTPLRLITVVQEEALNLGKVKH---LIFDEADKLFDKTFVEQTDDILSSC 312
E ++I TP RL E L+ KH LI DEAD L D F I+S
Sbjct: 128 FREKNPSVVIGTPGRL-----NEMLSHISSKHLEILILDEADTLIDMGFQRTLQSIISQL 182
Query: 313 TDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLI 371
P R+T +FSAT+ V + I G + + +++ +
Sbjct: 183 --PKQRRTGLFSATMNDTVSSFLK---------IAGLRNSVRVSVTVTSKKIDTRTPSSL 231
Query: 372 AIRQLVLEGEFK-------------PPVIIFLESITRAKALFHELLYDKLNVDVI--HAE 416
AI+ LV+ +K I+F S + L KL +++ H +
Sbjct: 232 AIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQ 291
Query: 417 RTQVQRDKIIERF-KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ Q R + E+F KS L TD+ +RG+D V+ V+ D P +++ H
Sbjct: 292 QVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 112 bits (279), Expect = 2e-24
Identities = 104/389 (26%), Positives = 181/389 (45%), Gaps = 72/389 (18%)
Query: 139 QFDKRLLNNLIENNFTEPTPIQS----ESIPIL-----LHER-------DMIACAPTGSG 182
+ + +LL N+ +N T PIQS +P+L + +R D++ A TGSG
Sbjct: 180 ELEAKLLQNICKNFSTNTFPIQSIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSG 239
Query: 183 KTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAX 242
KTLA+ IP++Q + + L+ +II PTK L NQ++ +KL + L V+
Sbjct: 240 KTLAYSIPIVQTLFKRQIN-RLRCIIIVPTKLLINQVYTTLTKLT------QGTSLIVSI 292
Query: 243 XXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFV 302
+S + DI+I+TP RL+ + +++NL +K LI DEAD+L +++F
Sbjct: 293 AKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 303 EQTDDILSSC-TDP------HLRKTMFSATIPSNVEEIAQTIM---------NDPIRVII 346
++S TD ++ K +FSAT+ +N E++ + D + +
Sbjct: 353 GWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLP 412
Query: 347 GHKEAANINID------QQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFL---ESITRAK 397
NINI + L+ L +I Q + ++IF+ ES R
Sbjct: 413 NKLNEFNINIPTAKSVYKPLIL-------LYSICQFMAHSPIAAKILIFVKSNESSIRLS 465
Query: 398 ALFHELLYDK-------------LNVDVIHAERTQVQRDKIIERF----KSGDLWCLICT 440
L + + ++++ +++ ++ + KI+ F +S + LI T
Sbjct: 466 KLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITT 525
Query: 441 DVLARGVDFKGVNLVINYDVPRSAQAYVH 469
D+++RG+D + VINYD P S+Q YVH
Sbjct: 526 DIMSRGIDINDITQVINYDPPMSSQQYVH 554
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 112 bits (279), Expect = 2e-24
Identities = 94/350 (26%), Positives = 161/350 (45%), Gaps = 26/350 (7%)
Query: 137 RFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII 196
+F L + + F T +Q ++PI+L +D++A A TG+GKT+AFL+P ++ +I
Sbjct: 363 QFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVI 422
Query: 197 N------DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
D + L++ PT+ELA+Q E + L L + V
Sbjct: 423 KSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTL-----LKYHPSIGVQVVIGGTKLP 477
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEE---ALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+ + I+++TP RL ++ A L VK L+ DEAD L D F +
Sbjct: 478 TEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIER 537
Query: 308 ILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQ--QLVFCG 364
I+++ P R+T +FSAT+P V +I + I +E + + Q+
Sbjct: 538 IIAAV--PKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIA 595
Query: 365 NEEGKLIAIRQLVLEG-----EFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQ 419
+ + + L+ E ++K VIIF + + + L LNV IH+ + Q
Sbjct: 596 SLDRHFSLLHVLLKEHIADNVDYK--VIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQ 653
Query: 420 VQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
R ++ + F+ L+ +DV ARGVD+ V+LV+ +P + Y+H
Sbjct: 654 SYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 703
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 112 bits (279), Expect = 2e-24
Identities = 91/383 (23%), Positives = 167/383 (42%), Gaps = 34/383 (8%)
Query: 139 QFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND 198
+ D+R+L + + + +PT IQS +IP+LL +D++ A TGSGKT + +PL+Q+I+N
Sbjct: 15 ELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNS 74
Query: 199 KTTVG---LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
K + ++++PTK+L Q K+ ++ + ++VA
Sbjct: 75 KLNASEQYVSAVVLAPTKKLCRQ----SRKVIEQLVESCGKVVRVADIADSSNDTVTQRH 130
Query: 256 ISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTD 314
+ DI+++TP L+ + ++L V+ L+ DEAD +F + E+ L
Sbjct: 131 ALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGY-EKDFKRLIKHLP 189
Query: 315 PHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIR 374
P + + SAT+ +V + +N+P+ + + E + E K +
Sbjct: 190 PIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILY 249
Query: 375 QLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDL 434
L+ + IIF+ SI R + L + V+++E R I +F G
Sbjct: 250 ALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTY 309
Query: 435 WCLICTD-------------------------VLARGVDFKGVNLVINYDVPRSAQAYVH 469
+I +D +RG+DF+ VN VIN+D PR +Y+H
Sbjct: 310 DIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIH 369
Query: 470 XXXXXXXXXXXXKAITFYTKQDS 492
++F + ++S
Sbjct: 370 RAGRTARGNNKGSVLSFVSMKES 392
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 110 bits (276), Expect = 4e-24
Identities = 112/401 (27%), Positives = 167/401 (40%), Gaps = 67/401 (16%)
Query: 133 DLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGK--------- 183
D + LL + +PTPIQ + IP RD+ A A TGSGK
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQVQFIP--QEWRDLCASAITGSGKVSTRLMVLC 224
Query: 184 -----------TLAFLIPLLQQII-NDKTTVGLKGLIISPTKELANQIFIECSKLANKIY 231
T AF +P L++++ K + LI++PT+ELA QI LA +
Sbjct: 225 NTEILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQ--F 282
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEE-ALNLGKVKHLIF 290
D K L V V+ DI+++TP R+I ++ +++L + LI
Sbjct: 283 TDIKCGLIVGGLSVREQE-----VVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 337
Query: 291 DEADKLFDKTFVEQTDDILSSCTDPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGHK 349
DEAD+L F + +++ C P R+TM FSAT+ V+E+ + +N P+R+
Sbjct: 338 DEADRLLQTGFATEITELVRLC--PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPS 395
Query: 350 EAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVII--FLESITRAKALFHELLYDK 407
+ ++ + EF P ++ R K LF
Sbjct: 396 ARRPPGLTEEYL------------------REFFVPSCASGTKQAAHRLKILFG---LAG 434
Query: 408 LNVDVIHAERTQVQRDKI----------IERFKSGDLWCLICTDVLARGVDFKGVNLVIN 457
L +H TQ QR + +E F+ ++ LI TDV ARG+D GV VIN
Sbjct: 435 LKAAELHGNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVIN 494
Query: 458 YDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
Y PR +YVH A+TF T D +K I
Sbjct: 495 YACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 535
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 110 bits (274), Expect = 8e-24
Identities = 92/356 (25%), Positives = 175/356 (48%), Gaps = 35/356 (9%)
Query: 134 LITRFQ---FDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
L+ FQ + ++ L E N PT IQ IP ++ + ++ + TGSGKTLA+L+P
Sbjct: 110 LVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP 169
Query: 191 LLQQIIN----DKTTVGLKG-------LIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
++Q + D+ +G K +++ PT+EL+ Q+ + + + R +
Sbjct: 170 IVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLH-----QDYHHARFRSIL 224
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK 299
V+ + D+++ TP R++ ++E + G + +L+ DEAD +FD+
Sbjct: 225 VSGGSRIRPQEDSL----NNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR 280
Query: 300 TFVEQTDDILSSCTDPHLR---KTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
F + L+ + H++ + + + V+E Q I + +R HK+ AN
Sbjct: 281 GFGPEIRKFLAP-LNQHIKVVNEIVSFQAVQKLVDEEFQGI--EHLRTSTLHKKIANARH 337
Query: 357 DQQLVFCGNEEGKLIAIRQLVLEGEFK-PPVIIFLESITRAKALFHELLYDKLNVDVIHA 415
D + E KL A+ Q++ K V++F ++ ++A+ H L ++++ H
Sbjct: 338 D--FIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHG 395
Query: 416 ERTQVQRDKIIERFK--SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
E QR + +++FK GD L+CTD+ ARG+D V+ V+ +D P+++ Y+H
Sbjct: 396 EVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 450
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 109 bits (273), Expect = 1e-23
Identities = 92/331 (27%), Positives = 159/331 (47%), Gaps = 20/331 (6%)
Query: 142 KRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
K L E F TPIQ+ L ++ APTG+GKTLAFL+P+L +I D
Sbjct: 4 KPALQAQFEQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRI--DPKV 61
Query: 202 VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
+ LI++P++ELA Q + + + V + +DK
Sbjct: 62 KQTQVLILAPSQELAMQTTAVAREWGALV------DVSVTSLIGGANGRRQADKLKKDKP 115
Query: 262 DIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDI--LSSCTDPHLRK 319
I++ T R++T++ AL L ++ +IFDEAD + E+ D + L++ ++
Sbjct: 116 HIVVGTLGRVLTMLDGGALKLNGLQTVIFDEADAMLSD---ERRDSLQALAAQLPTDVQL 172
Query: 320 TMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLE 379
+FSAT +++ +A T + V +G A I + Q V +++ K + QL
Sbjct: 173 GLFSATSGVDLKYVADTFGQEVRPVSVGTDAPAAITHEFQYV---DQKAKASLLIQLARN 229
Query: 380 GEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHA-ERTQVQRDKIIERFKSGDLWCLI 438
K ++F +I+ + L + +V I + ++ QVQR + FK G++ L+
Sbjct: 230 ---KQQALVFFNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLL 286
Query: 439 CTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
TDV ARG+D + + LV+N +P+ + Y+H
Sbjct: 287 VTDVAARGLDIEDLPLVVNAQLPQRKKTYIH 317
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 109 bits (272), Expect = 1e-23
Identities = 94/394 (23%), Positives = 174/394 (43%), Gaps = 23/394 (5%)
Query: 145 LNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT-VG 203
L + + ++ T +Q S LL+ D++ +PTGSGKTLAF++P+++ I N K
Sbjct: 21 LLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD 80
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
+ LI+SP++EL +QI A K+ L V + +I
Sbjct: 81 IGALILSPSRELCSQIVSVIQPFAEKLNLT------VETVTGGQKVDKNIKMFKNKNVNI 134
Query: 264 IISTPLRLITVVQEE----ALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK 319
+++TP RL ++Q E A + ++ L+ DEAD+ + F + +ILS C R
Sbjct: 135 LVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILS-CIPKQRRT 193
Query: 320 TMFSATIPSNVEEIAQTIMNDPIRVIIGHKE--AANINIDQQLVFCGNEEGKLIAIRQLV 377
+FSAT +++ + + +V + + AA + V C +E + + +
Sbjct: 194 GLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIR 253
Query: 378 LEGEFKPPVIIFLESITRAKALFH--ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLW 435
+ K ++IF S + + E K + +H + + R I+ F
Sbjct: 254 QRTDKK--ILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNG 311
Query: 436 CLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAI 495
+I TDV+ARG+D ++ VI +D+P+ + +VH A+ + +
Sbjct: 312 VMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYV 371
Query: 496 KPIINVMKQSGCEVSEWMQKISSMSKREKESLKK 529
+ N K E+ K+ + + R+ E L++
Sbjct: 372 NFLDNHEKVKLDEI-----KVPTNNSRKSEELRQ 400
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 109 bits (272), Expect = 1e-23
Identities = 89/330 (26%), Positives = 154/330 (45%), Gaps = 14/330 (4%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
L+ L + TPIQ + IP +L +D I A TGSGKT AF +P+L+++ + V
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP--VS 75
Query: 204 LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
L+++PT ELA QI + + + ++V + + + I
Sbjct: 76 HFALVLTPTHELAYQISEQF------LVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH-I 128
Query: 264 IISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMF 322
+++ P RL + + + +K+L+ DEAD++ + F E I+ C + F
Sbjct: 129 VVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLS-IIERCLPKTRQNLFF 187
Query: 323 SATIPSNVEEIAQ-TIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL--VLE 379
SAT+ ++E + I +D A +DQ+ + C + + ++ I L E
Sbjct: 188 SATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247
Query: 380 GEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLIC 439
V+IF + + L L +++ +H Q +R + RFKS + LI
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307
Query: 440 TDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
TDV ARG+D V LV+N+ +PR+ + Y+H
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIH 337
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 108 bits (271), Expect = 2e-23
Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 21/340 (6%)
Query: 145 LNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT--- 201
L L + + T +Q ++ L +D + A TG+GK++AFL+P ++ ++ +
Sbjct: 340 LKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 399
Query: 202 ----VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS 257
+ LI+ PT+ELA+QI E K L + V +
Sbjct: 400 VNKVAPIFALILCPTRELASQIAAE-----GKALLKFHDGIGVQTLIGGTRFKLDQQRLE 454
Query: 258 EDKYDIIISTPLRLITVVQEEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTD 314
+ I+I+TP RL+ ++ ++ L +K I DEAD L D F + I+ C
Sbjct: 455 SEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIID-CLP 513
Query: 315 PHLRKTMFSATIPSNVEEIAQTIMNDPIRVI--IGHKEAANINIDQQLVFCGNEEGKLIA 372
+ +FSATIP V ++Q ++ I IG + +Q E
Sbjct: 514 RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHL 573
Query: 373 IRQLVLEGEFKPP---VIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERF 429
+ L+ E P +I+F + ++ L KLNV IHA + Q+ R ++ + F
Sbjct: 574 VPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEF 633
Query: 430 KSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
K + L+ +DV ARG+++ V LVI +P + Y+H
Sbjct: 634 KESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 673
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 108 bits (270), Expect = 2e-23
Identities = 103/412 (25%), Positives = 173/412 (41%), Gaps = 66/412 (16%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
+L +L NF PT IQ +SIP+++ D++ A TGSGKTLA+ IP+++++I++ +
Sbjct: 182 ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKN 241
Query: 204 LK--GLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKY 261
K LI +PT+ELA+Q+ K+ + L K + ++ + ++
Sbjct: 242 KKPISLIFTPTRELAHQVTDHLKKICEPV-LAKSQYSILSLTGGLSIQKQQRLLKYDNSG 300
Query: 262 DIIISTPLRLITVVQEEAL---NLGKVKHLIFDEADKLFDKTFVEQTDDIL--------- 309
I+I+TP R + +++++ KV LI DEAD+L ++ + I+
Sbjct: 301 QIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRK 360
Query: 310 ----SSCTDPHLRKTMFSATIP-------------------SNVEEIAQTIMN------- 339
S + + +FSAT +N +E+ I +
Sbjct: 361 NRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHF 420
Query: 340 --DPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAK 397
P+ + + + I + L+ C E L L + F +IF +I K
Sbjct: 421 NSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTM---FPGTTLIFCNAIDSVK 477
Query: 398 ALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDL----------------WCLICTD 441
L L + IH+ TQ R K +ERFK LI +D
Sbjct: 478 KLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASD 537
Query: 442 VLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSL 493
V ARG+D GV VI+Y +PRS Y+H + + Q+S+
Sbjct: 538 VAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESM 589
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 108 bits (270), Expect = 2e-23
Identities = 110/459 (23%), Positives = 200/459 (42%), Gaps = 66/459 (14%)
Query: 138 FQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN 197
F D+R+L ++ E + + +Q I + L ++++ A TGSGKT AFLIPL+Q++I
Sbjct: 94 FGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIA 153
Query: 198 DKTT----VGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXX 253
+ T VG +II+PTKEL QI+ KL+ + +
Sbjct: 154 ESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPF-------LQAINLCDINEEEN 206
Query: 254 XVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCT 313
V ED+ ++++TP +L+ + V +L+ DEAD L + E+ I S
Sbjct: 207 SVWLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSK-L 265
Query: 314 DPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVF---CGNEEGK- 369
P + M SAT+ ++ + + M P+ + I E N DQ + CG++E +
Sbjct: 266 PPTYQCLMTSATLKDDMTTLKKLFMTGPV-ITIKLTEGDLPNSDQLTQYQLTCGSDEERF 324
Query: 370 --LIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
L+A+ +L L I+F+ +I R L L L ++++ R +I
Sbjct: 325 AILVAMFKLKL---IVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVIN 381
Query: 428 RFKSGDLWCLICTDV--------------------------------------LARGVDF 449
+F G +I +DV ++RG+DF
Sbjct: 382 QFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDF 441
Query: 450 KGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI-INVMKQSGCE 508
V+ V+N+D P + AY+H A++F + ++ I + +Q G +
Sbjct: 442 HHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEINQQMGRK 501
Query: 509 VSE----WMQKISSMSKREKESLKK-GKGHVERKQISTV 542
V + ++++ + R +E+L K KG +++ ++ +
Sbjct: 502 VLQPYEFRIKELDTFLLRTREALSKCTKGVIKKARLKEI 540
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 108 bits (269), Expect = 3e-23
Identities = 80/327 (24%), Positives = 154/327 (46%), Gaps = 19/327 (5%)
Query: 172 DMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIY 231
DM+ A +G+GKTL F + ++ + D + ++ +I++PT+E++ QI K+A
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENL--DSRSSHIQKVIVTPTREISVQIKETVRKVA---- 104
Query: 232 LDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFD 291
+ + + + + I+I TP R+ +V+ A+N+ V + D
Sbjct: 105 ---PTGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLD 161
Query: 292 EADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKE 350
EADKL D+ F + + I++S P +R+ +FSAT P N++ + T + D V +
Sbjct: 162 EADKLMDEVFRDDINIIINSL--PQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADD 219
Query: 351 AANINIDQQLVF-CGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLN 409
I Q +V C KL + + + + ++F + I++ + + L L+
Sbjct: 220 VQLFGIKQYVVAKCSPMLEKLTHVLKSIRYVQ----ALVFCDQISKCEPIATHLKSSGLD 275
Query: 410 VDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
V + + +Q R +++ ++ + L+ +D+ ARG+D VNLV+N D + + Y H
Sbjct: 276 VTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFH 335
Query: 470 XXXXXXXXXXXXKAITFYTKQDSLAIK 496
A+T +D A+K
Sbjct: 336 RIGRAARFGAHGAAVTLL--EDERALK 360
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 108 bits (269), Expect = 3e-23
Identities = 86/362 (23%), Positives = 162/362 (43%), Gaps = 20/362 (5%)
Query: 139 QFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND 198
+ + LL + F +P+ IQ ++ +D+ + GSGKT+ LI +LQ I D
Sbjct: 2 ELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGI--D 59
Query: 199 KTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISE 258
L+ ++++P + +A + + L R L V IS
Sbjct: 60 CEDAHLQVILLAPQRGMAQRAHEQLKSLG--------RNLNVNATCLGFDTTAENDKISH 111
Query: 259 DKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLR 318
+++ TP ++ + + ++K + DEAD++ K F +Q ++ S ++
Sbjct: 112 ----VLMGTPKDFLSNIPSDT---SRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQD-VQ 163
Query: 319 KTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVL 378
+ SAT+PS V ++ M DPIR+++ E I Q + +E K + L L
Sbjct: 164 VVLLSATMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDL-L 222
Query: 379 EGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLI 438
+ + +IF + R L +L+ + V H +R+ +++ F S + L+
Sbjct: 223 KTSRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLV 282
Query: 439 CTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPI 498
TD++ARG++ + +L+INYDV + + Y+ I+F+T+ D +K I
Sbjct: 283 TTDLMARGMNIR-KSLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKI 341
Query: 499 IN 500
N
Sbjct: 342 EN 343
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 107 bits (268), Expect = 4e-23
Identities = 99/397 (24%), Positives = 178/397 (43%), Gaps = 80/397 (20%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHE-RDMIACAPTGSGKTLAFLIPLLQQIINDKTTV 202
L+ ++ +F EPT IQ + ++ +D+I A TGSGKTLAF +P+LQ++++++ V
Sbjct: 202 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 261
Query: 203 G------------------LKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXX 244
G L+ LII+PT+ELA Q+ A + + K P+
Sbjct: 262 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSV-KVVPIVGGMFS 320
Query: 245 XXXXXXXXXXVISEDKYDIIISTPLR---LITVVQEEALNLGKVKHLIFDEADKLFDKTF 301
++K +I+++TP R L++ ++ + L + + DEAD++ ++
Sbjct: 321 EKQERRL------KEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGH 374
Query: 302 VEQTD---DILSSCTDPHLRKT--------------------MFSATIP----------- 327
+ D+L P+ KT +FSATI
Sbjct: 375 FRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKR 434
Query: 328 -------------SNVEEIAQTI-MNDPIRVI-IGHKEAANINIDQQLVFCGNEEGKLIA 372
+++E +++ M D + +I + I++ + C +E
Sbjct: 435 GSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYL 494
Query: 373 IRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSG 432
L + G+ + I+F S+T + + L L+V + +E Q R K I+RF++
Sbjct: 495 YYILSVHGQGR--TIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRAS 552
Query: 433 DLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ LI TD++ARG+D K V +I+Y +P SA+ YVH
Sbjct: 553 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVH 589
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 107 bits (268), Expect = 4e-23
Identities = 92/342 (26%), Positives = 151/342 (43%), Gaps = 25/342 (7%)
Query: 145 LNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGL 204
L L + + T +Q ++ L +D + A TG+GK++AFL+P ++ ++ K
Sbjct: 387 LKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVL--KAMNSG 444
Query: 205 KG---------LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
KG LI+ PT+ELA+QI E K L + V
Sbjct: 445 KGVHKVAPIFVLILCPTRELASQIAAE-----GKALLKNHDGIGVQTLIGGTRFRLDQQR 499
Query: 256 ISEDKYDIIISTPLRLITVVQEEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSC 312
+ + I+I+TP RL+ ++ ++ L +K I DEAD L D F + I+ C
Sbjct: 500 LESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIID-C 558
Query: 313 TDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVI--IGHKEAANINIDQQLVFCGNEEGKL 370
+ +FSATIP V ++Q ++ I IG + +Q E
Sbjct: 559 LPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHF 618
Query: 371 IAIRQLVLEGEFKPP---VIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
+ L+ E P +I+F + ++ L KLNV IHA + Q+ R + +
Sbjct: 619 HLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSD 678
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
FK + L+ +DV ARG+++ V LVI +P + Y+H
Sbjct: 679 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 107 bits (268), Expect = 4e-23
Identities = 105/409 (25%), Positives = 175/409 (42%), Gaps = 71/409 (17%)
Query: 158 PIQSESIPILLHE---------RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLI 208
P+Q + IP +L RD+ APTGSGKTLAF IP++ Q+++ + ++ L+
Sbjct: 162 PVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIV-QLLSQRVDCKVRALV 220
Query: 209 ISPTKELANQIFIECSKLANKIYLD-----KKRPLQVAXXXXXXXXXXXXXVISEDKYDI 263
+ P ELA Q++ S+L +K L+ K+ L+ K DI
Sbjct: 221 VLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYY----SKADI 276
Query: 264 IISTPLRLITVVQ-EEALNLGKVKHLIFDEADKLFDKTF-----------VEQTDDILSS 311
+++TP RL+ + + L +K L+ DEAD++ D F E TD +L+
Sbjct: 277 VVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAG 336
Query: 312 CTDP------------HLRKTMFSATIPSNVEEIAQTIMNDP-----IRVIIGHKEAANI 354
P K +FSAT+ + E++ + P + + K+A
Sbjct: 337 TQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEE 396
Query: 355 NID-QQLVFCGNEEGKLIAIRQL-----VLEGEFKPPVII-------------FLESITR 395
D + L G G+ +L V E KP + F S +
Sbjct: 397 GADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQ 456
Query: 396 AKALFH--ELLYDKLNVDV--IHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKG 451
A L ++L+ K + V + + R++ + F +G + LIC+D LARG+D
Sbjct: 457 ATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVAD 516
Query: 452 VNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIIN 500
V++V++Y+ PR Y+H A+T T+QD K I++
Sbjct: 517 VDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKILS 565
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 107 bits (267), Expect = 5e-23
Identities = 113/468 (24%), Positives = 205/468 (43%), Gaps = 66/468 (14%)
Query: 101 KIITKQD-----ALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTE 155
K++ KQ+ ALK+ S+ N + S + + + L ++ + + L + + +
Sbjct: 180 KVLGKQEMKNLEALKVTSSWVQNATTFSATIDSSTSQKL-SQIELPEHLT---VPSAIST 235
Query: 156 PTPIQSESIPILLHE---------RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKG 206
P+Q +P L E RD+ APTGSGKT+ +++P+L + K + L+
Sbjct: 236 WFPVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVL-AAVGSKPSKILQA 294
Query: 207 LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIS 266
+I+ P + L QI E K + D+ +V ++ D ++I++
Sbjct: 295 VILVPVQTLVAQIVDEF-----KRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVA 349
Query: 267 TPLRLITVVQEE---ALNLGKVKHLIFDEADKLFDKTFVEQTDDILS---------SCTD 314
TP RL+ + + ++L K++ LI DEAD++ K E+ D++ +C
Sbjct: 350 TPARLVQHLTSKIPPPIDLSKLRFLIVDEADRM-GKLMREEWLDLVEFLCGGMERVACLK 408
Query: 315 PHLR------KTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG 368
+R K + SAT+ +VEE+ + P + + +I + + G
Sbjct: 409 DIIRQRRAPQKIVLSATLSKDVEELHLWNLFKP--RLFSATAVSVKDITSGIPQVDHVSG 466
Query: 369 KL-----IAIRQLVLEGEFKP-------------PVIIFLESITRAKALFH---ELLYDK 407
+L I+ R +V + +F P +IF+ ++ + L H EL D+
Sbjct: 467 RLALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQ 526
Query: 408 LNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAY 467
VD A+ +R K++E+F + LIC+DVLARG D V+ VINY++P + +
Sbjct: 527 FEVDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLF 586
Query: 468 VHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQK 515
VH I+ K+ ++ V G V E M++
Sbjct: 587 VHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEE 634
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 107 bits (267), Expect = 5e-23
Identities = 95/321 (29%), Positives = 156/321 (48%), Gaps = 49/321 (15%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKT--- 200
++ L + F TP+Q+E+IP L +D++ A TGSGKTLAFL+P ++ I +
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 201 -TVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISED 259
+ G+IISPT+EL+ QI K+A + LD + +V + E+
Sbjct: 88 KPHQVMGVIISPTRELSAQI----HKVARAVRLDFAKCREV---------EADMNTLEEE 134
Query: 260 KYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLR 318
+++I TP RL +++ E L+ ++ LI DEAD+L D F +Q + I+S P R
Sbjct: 135 GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL--PKQR 192
Query: 319 KT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
+T +FSAT V ++A+ + +P ++++ QLV L+
Sbjct: 193 RTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSS------QLV-------------HLL 233
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDK------LNVDVIHAERTQVQRDKIIERFKS 431
+E + K V+ F+ T A + L+ K ++ H + Q RD + F
Sbjct: 234 IENKNKKLVVFFM---TCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTE 290
Query: 432 GDLWCLICTDVLARGVDFKGV 452
L+CTDV ARG+D G+
Sbjct: 291 ASSGVLLCTDVAARGLDIPGI 311
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 107 bits (266), Expect = 6e-23
Identities = 116/432 (26%), Positives = 184/432 (41%), Gaps = 76/432 (17%)
Query: 139 QFDKRLLNNLIEN-NFTEPTPIQSESIPILLH--ERDMIACAPTGSGKTLAFLIPLLQQI 195
Q D +L ++L N + PT IQS +P LL+ ++D A TGSGKTLA+L+P++Q++
Sbjct: 144 QLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
Query: 196 IN-----DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
I T G+ +I++PT+EL QI+ +ANK+ + V+
Sbjct: 204 IRLPKNLHTRTSGIYAVIMAPTRELCQQIY----NVANKLNNNPLSHWIVSCNVIGGEKK 259
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDIL 309
+I+I TP RL ++ EAL++ +V+ ++ DE D+L D F E IL
Sbjct: 260 KSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
Query: 310 S-----------SCTDPHLRKTMF-SATIPSNVEEIAQTIMNDPIRVIIGHKEAANINID 357
S + P + TM SAT+ V+ ++ + + D + + E N
Sbjct: 320 SYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYS 379
Query: 358 Q------QLVFCGNEEGKLIAIRQLVLEG-EFKPPVIIFL-------------------- 390
Q Q + +L+++ L+ +IIFL
Sbjct: 380 QAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINAD 439
Query: 391 --------------ESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGD--- 433
+ I+ A AL + K NV +H +Q R + F S +
Sbjct: 440 EMEEAVKEKPDSEGDIISNAPAL---RIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSG 496
Query: 434 LWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSL 493
L+CTDV ARG+D V+LV+ YD P S Y+H AI F ++S
Sbjct: 497 SHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKES- 555
Query: 494 AIKPIINVMKQS 505
IN++K S
Sbjct: 556 ---EYINLLKSS 564
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 107 bits (266), Expect = 6e-23
Identities = 90/348 (25%), Positives = 156/348 (43%), Gaps = 22/348 (6%)
Query: 137 RFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQII 196
+F L + + F T +Q ++P++L +D++A A TG+GKT+AFL+P ++ +I
Sbjct: 84 QFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVI 143
Query: 197 N------DKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
D + L++ PT+ELA Q E + I L + V
Sbjct: 144 KAPPASRDNRHPPIIVLVVCPTRELACQAAAEAN-----ILLKYHPSIGVQVVIGGTKLP 198
Query: 251 XXXXVISEDKYDIIISTPLRLITVVQEE---ALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
+ + I+++TP RL + A L VK L+ DEAD L D F + +
Sbjct: 199 TEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIER 258
Query: 308 ILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVIIGHKEAA---NINIDQQLVFC 363
I+++ P R+T +FSAT+ V +I + + +E A + + Q +
Sbjct: 259 IIAAV--PKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIA 316
Query: 364 GNEE--GKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQ 421
+ L + + + VIIF + + + L LNV IH+ + Q
Sbjct: 317 SLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSY 376
Query: 422 RDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
R ++ + F+ L+ +DV ARGVD+ V+LV+ +P + Y+H
Sbjct: 377 RTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 424
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 105 bits (261), Expect = 2e-22
Identities = 88/315 (27%), Positives = 154/315 (47%), Gaps = 21/315 (6%)
Query: 153 FTEPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIIS 210
F P+ IQ ++P++L +++IA + +G+GKT AF++ +L ++ + + + L ++
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV--NALELFPQCLCLA 60
Query: 211 PTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLR 270
PT ELA Q ++ K +D +QV + + III TP
Sbjct: 61 PTYELALQTGRVVEQMG-KFCVD----VQVMYAIRGNRIPRGTDITKQ----IIIGTPGT 111
Query: 271 LIT-VVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSN 329
++ + + ++L K++ + DEAD + D + + +FSAT +
Sbjct: 112 VLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 330 VEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL---VLEGEFKPPV 386
V A+ I+ DP + + +E NI Q V C + + K A+ + + G+
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQ----A 227
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
IIF ++ AK L E++ D V ++ E T QR II+RF+ G LI T+V ARG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 287
Query: 447 VDFKGVNLVINYDVP 461
+D K V +V+N+D+P
Sbjct: 288 IDVKQVTIVVNFDLP 302
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 105 bits (261), Expect = 2e-22
Identities = 111/454 (24%), Positives = 185/454 (40%), Gaps = 98/454 (21%)
Query: 141 DKRLLNNLIEN-NFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK 199
D +L + L E F PT +Q+++IP++L RD++ APTG+GKT+A+L PL+ +
Sbjct: 37 DTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHS 96
Query: 200 TTV----GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
V G L+I PT+EL Q++ KL ++ + V
Sbjct: 97 PKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFH------WIVPGYVMGGEKKAKEKA 150
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGK-VKHLIFDEADKLFDKTF---VEQTDDILSS 311
I+I+TP RL+ ++ A + K ++ +IFDEAD + + + +EQ +L S
Sbjct: 151 RLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGS 210
Query: 312 CTDP------------HLRKTMFSATIPSNVEEIAQTIMNDPIRV--------------- 344
+ + + SAT+ V ++A+ ++DP+ +
Sbjct: 211 GQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIES 270
Query: 345 -----------IIGHKEAAN-----INIDQQLVF------CGNEEGKLIAIRQLVLEGEF 382
+I ++AN I QLV CG L+++ + + E E
Sbjct: 271 PAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREA 330
Query: 383 KPPVIIFLESITRAKALFH--------------------ELLYDKLNVDVIHAERTQVQR 422
V++F TR FH + L+ K +H Q R
Sbjct: 331 SQKVVVFFS--TRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDR 388
Query: 423 DKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXK 482
FK+ L+ TDV ARG+DF V +I YD P A YVH +
Sbjct: 389 RSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGE 448
Query: 483 AITFYTKQDSLAIKPI----INVMKQSGCEVSEW 512
A+ F ++PI + +K+ G ++E+
Sbjct: 449 ALLF--------LQPIEIDYLKELKKHGASLTEY 474
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 104 bits (260), Expect = 3e-22
Identities = 97/379 (25%), Positives = 171/379 (44%), Gaps = 42/379 (11%)
Query: 105 KQDALKLRKSYQGNVSGNSVP-----LPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPI 159
K D + G++SG L F D+ LL + F +P+ I
Sbjct: 22 KHDTTAIETGLDGSISGVGTDRGQKLLVAEHFSDM----GLSDELLKAIYNQGFEKPSLI 77
Query: 160 QSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQI-INDKTTVGLKGLIISPTKELANQ 218
Q +IP +L +++ + +G+GKT+A+ +L I ++T V ++++PT+EL+ Q
Sbjct: 78 QKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGNTKIGERTQV----MVVTPTRELSTQ 133
Query: 219 IFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEE 278
+ S LA + + L+ + ++++ +P ++ +++
Sbjct: 134 VTEVISGLAGPLGIKVFSALK-------------NKITDSIGEEVVVGSPGTILKLMELG 180
Query: 279 ALNLGKVKHLIFDEADKLFDKTFV-EQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTI 337
LN VK ++ DEAD L DK + QT IL + + FSAT V++ +
Sbjct: 181 KLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLISGAQM--IFFSATFSEQVKQTIEFY 238
Query: 338 MNDPIRVIIGHKEAANINIDQQLVFCGNEEG--KLIAIRQLVLEGEFKPPVIIFLESITR 395
D +++ E N D+ +F EG K A++ L E +IIF+ +
Sbjct: 239 APDAVKMY----EERNGKPDEIKLFYIEAEGENKRRALKSLY-EYLSISQMIIFVSTKAT 293
Query: 396 AKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLV 455
L +L D +V +H + +R+K + F+S L+ TDV +RG+D VNL+
Sbjct: 294 VNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLI 353
Query: 456 INYDVP-----RSAQAYVH 469
+NYD+P S Q Y+H
Sbjct: 354 VNYDLPIYRGVASTQTYIH 372
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 103 bits (258), Expect = 5e-22
Identities = 96/344 (27%), Positives = 162/344 (46%), Gaps = 21/344 (6%)
Query: 122 NSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHE--RDMIACAPT 179
NS + SFE+L + +LL + F P+ IQ ++P++L E +++IA + +
Sbjct: 85 NSPLYSVKSFEEL----RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQS 140
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
G+GKT AF++ +L Q+ + + L +SPT ELA Q ++ K Y + K
Sbjct: 141 GTGKTAAFVLAMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMG-KFYPELKLAYA 197
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFD 298
V ISE I+I TP ++ + + ++ K+K + DEAD +
Sbjct: 198 VRGNKLERGQK-----ISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249
Query: 299 KTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQ 358
+ + + + +FSAT +V + AQ ++ DP + + +E I Q
Sbjct: 250 TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 309
Query: 359 QLVFCGNEEGKLIAIRQLVLEGEFK-PPVIIFLESITRAKALFHELLYDKLNVDVIHAER 417
V C + + K A+ L G +IF + A L EL + V ++ E
Sbjct: 310 YYVLCSSRDEKFQALCNLY--GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 367
Query: 418 TQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
QR +IERF+ G L+ T+V ARG+D + V++VIN+D+P
Sbjct: 368 MVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 103 bits (256), Expect = 9e-22
Identities = 87/315 (27%), Positives = 153/315 (47%), Gaps = 21/315 (6%)
Query: 153 FTEPTPIQSESIPILLHE--RDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIIS 210
F P+ IQ ++P++L +++IA + +G+GKT AF++ +L ++ + + + L ++
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV--NALELFPQCLCLA 60
Query: 211 PTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLR 270
PT ELA Q ++ K +D +QV + + III TP
Sbjct: 61 PTYELALQTGRVVEQMG-KFCVD----VQVMYAIRGNRIPRGTDITKQ----IIIGTPGT 111
Query: 271 LIT-VVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSN 329
++ + + ++L K++ + DEAD + D + + +FSAT +
Sbjct: 112 VLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 330 VEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQL---VLEGEFKPPV 386
V A+ I+ DP + + +E NI Q V C + + K A+ + + G+
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQ----A 227
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
IIF ++ AK L E++ D V ++ E T QR I +RF+ G LI T+V ARG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARG 287
Query: 447 VDFKGVNLVINYDVP 461
+D K V +V+N+D+P
Sbjct: 288 IDVKQVTIVVNFDLP 302
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 103 bits (256), Expect = 9e-22
Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 34/345 (9%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVG 203
LL + F P+ IQ +I ++ RD+ A A +G+GKT AF + LQ I D +
Sbjct: 49 LLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ--ICDMSQDV 106
Query: 204 LKGLIISPTKELANQIF-----IECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISE 258
+ L+++ T+E+A Q + C A L P+ V E
Sbjct: 107 TQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPI------------AADKVALE 154
Query: 259 DKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDP-HL 317
K I++ TP R+ ++ L++ +K + DEAD++ F EQ I T+ +
Sbjct: 155 KKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEV 214
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEG--------- 368
+ MFSAT +++ I+ +P+ + + + + I Q + E
Sbjct: 215 QIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYL 274
Query: 369 --KLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKII 426
KL+ + + + I+F+ S A+ ++ L+ + ++I AE TQ +R++ +
Sbjct: 275 LPKLVTLYDIFRKQRLGQS-IVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTL 333
Query: 427 ERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP--RSAQAYVH 469
RF+ G CLI + +L+RG+D + +++V DVP Y+H
Sbjct: 334 NRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIH 378
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 102 bits (254), Expect = 2e-21
Identities = 89/366 (24%), Positives = 156/366 (42%), Gaps = 59/366 (16%)
Query: 157 TPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV----GLKGLIISPT 212
T +Q +SIP+LL RD + + TGSGKTLA+ IP++Q + ++ + G L++ PT
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
+ELA Q F KL L + +I+ISTP RL+
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGI------NILISTPGRLV 368
Query: 273 TVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK--TMFSATIPSN 329
++ + ++ +++ L+FDEAD++ D F + IL++ ++ + SAT+
Sbjct: 369 DHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEG 428
Query: 330 VEEIAQTIMNDPIRVIIGHKEAANINIDQQLV--FCGNEEG------------------- 368
V +A ++DP+ + + K +N + V C G
Sbjct: 429 VTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVV 488
Query: 369 ----KLIAIRQLVLEG---EFKPPVIIFLESITRAK---ALFHELLYD------------ 406
+L+ + +L+ E +++F S + +LF + L
Sbjct: 489 PSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPS 548
Query: 407 ---KLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRS 463
+L +H Q +R + + F L+CTDV ARG+D V ++ Y+ P S
Sbjct: 549 ASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSS 608
Query: 464 AQAYVH 469
Y+H
Sbjct: 609 PAEYIH 614
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 102 bits (254), Expect = 2e-21
Identities = 96/396 (24%), Positives = 178/396 (44%), Gaps = 69/396 (17%)
Query: 130 SFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLI 189
SFE+L LL++L F+ PT +QS ++P ++ D + + TGSGKTLA+L+
Sbjct: 111 SFEEL----GLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLL 166
Query: 190 PLLQQI------------INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRP 237
P+L +I NDK T ++ +I++P++EL QI E KL ++ +R
Sbjct: 167 PILSEIGPLAEKSRSSHSENDKRT-EIQAMIVAPSRELGMQIVREVEKLLGPVH---RRM 222
Query: 238 LQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF 297
+Q + ++K I++ TP R+ + + L+ + L+ DE D+L
Sbjct: 223 VQ--QLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELL 280
Query: 298 DKTFVEQTDDILS-----SCTDP--------HLRKTMFSATIPSNVEEIAQTIMNDPIRV 344
F E IL S P + + + SAT+P +V A++ ++P+ V
Sbjct: 281 SFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLV 340
Query: 345 ---------------IIGHKEAANINIDQQL-------------VFC-GNEEGKLIAIRQ 375
+ D Q+ +C + K+ +R+
Sbjct: 341 QANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRR 400
Query: 376 LV--LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGD 433
V L+ + VI F+ + K + ++L +N +H + ++ R ++++FK+G+
Sbjct: 401 CVHALDAQ---SVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGE 457
Query: 434 LWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ L+ ++ ARG+D +LV+N ++P A Y H
Sbjct: 458 IKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAH 493
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 101 bits (252), Expect = 3e-21
Identities = 95/344 (27%), Positives = 163/344 (46%), Gaps = 21/344 (6%)
Query: 122 NSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHE--RDMIACAPT 179
NS + SFE+L + +LL + F P+ IQ ++P++L E +++IA + +
Sbjct: 84 NSPLYSVKSFEEL----RLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQS 139
Query: 180 GSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQ 239
G+GKT AF++ +L ++ + + + L +SPT ELA Q ++ K Y + K
Sbjct: 140 GTGKTAAFVLAMLSRV--EPSDRYPQCLCLSPTYELALQTGKVIEQMG-KFYPELKLAYA 196
Query: 240 VAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQE-EALNLGKVKHLIFDEADKLFD 298
V ISE I+I TP ++ + + ++ K+K + DEAD +
Sbjct: 197 VRGNKLERGQK-----ISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 248
Query: 299 KTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQ 358
+ + + + +FSAT +V + AQ ++ DP + + +E I Q
Sbjct: 249 TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 308
Query: 359 QLVFCGNEEGKLIAIRQLVLEGEFK-PPVIIFLESITRAKALFHELLYDKLNVDVIHAER 417
V C + + K A+ L G +IF + A L EL + V ++ E
Sbjct: 309 YYVLCSSRDEKFQALCNLY--GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 366
Query: 418 TQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
QR +IERF+ G L+ T+V ARG+D + V++VIN+D+P
Sbjct: 367 MVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 410
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 97.1 bits (240), Expect = 7e-20
Identities = 61/236 (25%), Positives = 117/236 (48%), Gaps = 5/236 (2%)
Query: 286 KHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK---TMFSATIPSNVEEIAQTIMNDP- 341
++L+ DEAD++ D F Q I+ P + MFSAT P ++ +AQ + +
Sbjct: 12 RYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENY 71
Query: 342 IRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFH 401
+ + +G + + NI Q++V+ +E + + L G+ ++F+E+ A L +
Sbjct: 72 VFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGD-SSLTLVFVETKRGASDLAY 130
Query: 402 ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
L V IH + Q +R+K ++ F++G L+ T V ARG+D V VINYD+P
Sbjct: 131 YLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLP 190
Query: 462 RSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKIS 517
YVH A +F+ ++ + +++++ ++ E+ +W++ +S
Sbjct: 191 SDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 246
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 95.9 bits (237), Expect = 1e-19
Identities = 81/313 (25%), Positives = 144/313 (45%), Gaps = 32/313 (10%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP----LLQQIINDK 199
L +NL PTPIQ S ++H D++ACA TGSGKTLAFLIP L+++ D+
Sbjct: 710 LHDNLKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDR 769
Query: 200 TTVGLKG----LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
K LI++PT+EL NQ F +L + L +
Sbjct: 770 DVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCG-----LAFGGYSRNANVQHL 824
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK-TFVEQTDDILSSCTD 314
S + +I+++T RL V ++L K+K+++ DEAD++ D F E+ I+ S +
Sbjct: 825 RSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGE 884
Query: 315 PHLRKTMFSATIPSNV--EEIAQTIMNDPIRVIIGHKEAANINIDQQLV----------- 361
+ +FSA+ ++ +++ + + + + AN IDQ+++
Sbjct: 885 RTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAI 944
Query: 362 --FCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQ 419
G +E + + +E K +IF+ S+ L + ++ +H+ + Q
Sbjct: 945 YKLLGIDENTVTLLPDAPIE---KQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQ 1001
Query: 420 VQRDKIIERFKSG 432
QRD+ ++ F+ G
Sbjct: 1002 EQRDRTLDDFRRG 1014
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 95.1 bits (235), Expect = 3e-19
Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 35/353 (9%)
Query: 131 FEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIP 190
FE L+ + +L L F P+P+Q ++IP+ D+I A +G+GKT F
Sbjct: 64 FESLL----LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI 119
Query: 191 LLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXX 250
L ++ + + + LI++PT+E+A QI + + K+
Sbjct: 120 ALDSLVLENLSTQI--LILAPTREIAVQIHSVITAIGIKM------------EGLECHVF 165
Query: 251 XXXXVISEDKY-----DIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK-TFVEQ 304
+S+DK I + +P R+ +++ + LN G ++ I DEADKL ++ +F EQ
Sbjct: 166 IGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 225
Query: 305 TDDILSSCTDPHLRKTM-FSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFC 363
+ I SS P ++ + SAT P + M DP V + + + I + Q
Sbjct: 226 INWIYSSL--PASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVV 283
Query: 364 GNE-------EGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAE 416
+ E K +++L F ++F +RA+ L L + I
Sbjct: 284 NSYPLAHKVFEEKTQHLQELFSRIPFNQ-ALVFSNLHSRAQHLADILSSKGFPAECISGN 342
Query: 417 RTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
Q QR + + K LI TD+ +RG+D + VNLV+N DVP + Y+H
Sbjct: 343 MNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMH 395
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 94.7 bits (234), Expect = 3e-19
Identities = 84/351 (23%), Positives = 154/351 (42%), Gaps = 26/351 (7%)
Query: 136 TRFQFDKRLLNNL-IENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQ 194
T Q +LL NL +E T IQ + +P++ + A TG GKT+ +L+P++ +
Sbjct: 111 TGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDK 170
Query: 195 IINDKTTVGLK-----GLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXX 249
++ + K LI++P +ELA QI KL L + L
Sbjct: 171 LLQKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNP 230
Query: 250 XXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDIL 309
++ DI+++T L +V + +V+HL+ DEAD L D TF ++ L
Sbjct: 231 QF-------EEVDILVATLGALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFL 283
Query: 310 S-------SCTDPHLRKTMFSATIPSNVEEIAQTIMN-DPIRVIIG-HKEAANINIDQQL 360
D + + SAT+P+N EI +++ D IR ++ H ++ Q+
Sbjct: 284 RRFPFHLVQKEDAGTQMILASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKF 343
Query: 361 VFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQV 420
+ + + + + + P+I+F T + F + + V+ ++ +
Sbjct: 344 LRLSKADRPATLLSLVKHDLAKRRPLIVFSNKSTTSD--FVSIFLNNSGVNCLNLNGDML 401
Query: 421 QRDKI--IERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ ++ E+F++G L TDV +RG+D V+N+D P Y+H
Sbjct: 402 MKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIH 452
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 94.4 bits (233), Expect = 4e-19
Identities = 88/354 (24%), Positives = 163/354 (45%), Gaps = 38/354 (10%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND----- 198
++ L E NF P IQ+ + ++ + I +GSGKTLA+L+P++Q++ +
Sbjct: 385 MMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGH 444
Query: 199 -KTTVGL-KGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVI 256
K++ G + +++ PT ELA+Q+ C ++ P + +
Sbjct: 445 SKSSPGCPRVIVLVPTAELASQVLANCRSISKSGV-----PFRSMVVTGGFRQRTQLENL 499
Query: 257 SEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLF-DKTFVEQTDDILSSCTDP 315
E D++I+TP R ++ E L L ++ I DE D LF D F ++++S P
Sbjct: 500 -EQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINS--SP 556
Query: 316 HLRKTMF-SATIPSNVEEIAQTIMNDPIRVIIGHKEAANIN-IDQQLVFCGNEEG----- 368
+ +F +AT+P + + D V++G + N +++ LV C ++
Sbjct: 557 VTAQYLFVTATLPLEIYNKLVEVFPD-CEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTP 615
Query: 369 ------KLIAIRQLVLEGEFKPPVIIF--LESITRAKALFHELLYDKLNVDVI--HAERT 418
K A+ Q++ E +I +E+ + + +F + + + V+ HA +
Sbjct: 616 ETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALS 675
Query: 419 QVQRDKIIERFKSG----DLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
Q R ++ F S + L+CTD +RG+DF GV+ V+ +D PR YV
Sbjct: 676 QESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYV 729
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 93.2 bits (230), Expect = 1e-18
Identities = 84/354 (23%), Positives = 162/354 (45%), Gaps = 36/354 (10%)
Query: 144 LLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIN-DKTTV 202
+L L + IQ IP +L D++ A T +GKT AF +P++ +I+ D+ T
Sbjct: 392 ILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETR 451
Query: 203 -------GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXV 255
G LI++PT+ELA QI A + Y + + +
Sbjct: 452 NKARQDDGPLALILAPTRELAAQIHE-----ALRTYCQNTDIIVLLSYGQSDRARSLNEI 506
Query: 256 ISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDP 315
+ DI+I T R++ + ++L ++ L+FDEAD+L + + + D
Sbjct: 507 --RNGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDA 564
Query: 316 HLRKT-------MFSATIPSNVEEIAQTIM------NDPIRVIIGHKEAANINIDQQLVF 362
++ M SAT ++V +A +M ++ I++++ + + ++ +
Sbjct: 565 GFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSK-RVNLEFFE 623
Query: 363 CGNEEGKLIAIRQLVLEGEFKPPV--IIFLESITRAKALFHELLYDKLNVDVIHAERTQV 420
C K +R+++ + + IIF++ + A +L + +H +R+Q
Sbjct: 624 CKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQD 683
Query: 421 QRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP-----RSAQAYVH 469
R+K+I FKS + L+ TD+L+RG+D ++ VIN+D+P + A ++H
Sbjct: 684 MREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIH 737
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 93.2 bits (230), Expect = 1e-18
Identities = 100/420 (23%), Positives = 174/420 (40%), Gaps = 51/420 (12%)
Query: 141 DKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK- 199
D+R++NNL + T +Q SI ++ R ++ APTG GKT AFLIP ++ + ++
Sbjct: 101 DQRIVNNLKCVHVTTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQ 160
Query: 200 ------TTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXX 253
T LI++ T L +Q+F C + +D P++
Sbjct: 161 SNCFEYTKPSPSILIMASTSALVDQLFNRCELILGLQCMDNVEPIR----DIKIDKLVAN 216
Query: 254 XVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK-TFVEQTDDILSSC 312
++ + DI T +L ++ + L +K +I DEADK+ D F + IL
Sbjct: 217 HPFTKGQCDIAFCTIGKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQL 276
Query: 313 TD---PHLRKTMFSATIPSNVE-EIAQTIM-------NDPIRVIIGHKEAANINIDQQLV 361
+ +L+ FSAT N IA T++ +DP VII + + I Q++V
Sbjct: 277 KEENLENLQSCFFSATYNKNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYIT--QRVV 334
Query: 362 FCGNEEG----------KLIAIRQLV----------LEGEFKPPVIIFLESITRAKALFH 401
G K+ IR+L+ +G + + IF E++ R +
Sbjct: 335 RVGRGRPNDIRSHPWVIKMGIIRKLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQVTM 394
Query: 402 ELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVP 461
L N + + T+ Q+ + + + ++CT++LARG+D V I ++
Sbjct: 395 ALRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMS 454
Query: 462 RSAQAYVHXXXXXXXXXXXXKAITFYTKQD------SLAIKPIINVMKQSGCEVSEWMQK 515
Y H K+ S I+ + N MK+S ++ +WMQ+
Sbjct: 455 ADFDTYKHRIGRVGRDGCGGKSTVLVEHHQLQGGPASNVIEQLYNFMKESKEDIPQWMQE 514
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 92.8 bits (229), Expect = 1e-18
Identities = 90/327 (27%), Positives = 154/327 (46%), Gaps = 44/327 (13%)
Query: 156 PTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKEL 215
PT +Q IP +L + + TGSGKTL++++P + + + + L+I PT+EL
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLESGDKRL----LVIVPTREL 134
Query: 216 ANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV 275
+Q+ K + + L++ +S +D+ ISTP RL ++
Sbjct: 135 VSQVGQVFRKFSEGL-------LRIVEITGEVSIESQRLQVSRP-FDVAISTPGRLRELL 186
Query: 276 QEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFSAT---------- 325
E ++G ++++ DEAD+L IL P + + FSAT
Sbjct: 187 --ELKSIGGFEYVVVDEADRLMQHDIRSDVTFILERMK-PEVA-SFFSATPFEWSGGTRI 242
Query: 326 IPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPP 385
+ NV + + + + + + KE + + + LV C K + + + LE +
Sbjct: 243 LVGNVS-VGRDV--EEFFMYVEKKEKMQV-LGEILVSCEGWLAKNMGVDRNGLEVK---K 295
Query: 386 VIIFLESITRAKAL---FHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDV 442
+I+F SI + L F +LL V+H+ RT +R +IE + G+ LI TD+
Sbjct: 296 IIVFCNSIRTCENLHKRFRQLL-------VLHSRRTMQERKAVIEALE-GERAVLIATDL 347
Query: 443 LARGVDFKGVNLVINYDVPRSAQAYVH 469
RG+D K V+LV+NYD+PR+ YVH
Sbjct: 348 GGRGIDIKDVDLVVNYDLPRAVDGYVH 374
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 92.4 bits (228), Expect = 2e-18
Identities = 97/425 (22%), Positives = 166/425 (38%), Gaps = 90/425 (21%)
Query: 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV----GLKGLIIS 210
E T +Q ++IP +L +D++ + TGSGKTLA+ +PL++ + + + G+ L+I
Sbjct: 350 ELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIV 409
Query: 211 PTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLR 270
PT+EL Q + KL K V +I+I TP R
Sbjct: 410 PTRELVMQTYELIQKLV------KPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGR 463
Query: 271 LIT-VVQEEALNLGKVKHLIFDEADKLFD-------KTFVEQTDDILSSCTD---PHLRK 319
L+ ++ + L K++ LI DEAD+L + K VE D + C D P L++
Sbjct: 464 LVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQR 523
Query: 320 TMFSATIPSNVEEIAQTIMNDPIRVIIGHKEA----------------ANINIDQQL-VF 362
+ SAT+ S V+++A + +P+ + + A A + +D L +
Sbjct: 524 MLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEY 583
Query: 363 CGNEEGKLIAIRQLVLEGEFKPP-----------------------VIIFLESITRAKAL 399
+ G L L L PP I+F+ S T
Sbjct: 584 QEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFM-STTEMVNF 642
Query: 400 FHELLYDKLNVDVIHAERTQ----------------------------VQRDKIIERFKS 431
H++L + L V+ E Q +R + F+
Sbjct: 643 HHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRD 702
Query: 432 GDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQD 491
L+ TDV+ RG+D + LV+ Y P++ +VH +A+ F T +
Sbjct: 703 CASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSE 762
Query: 492 SLAIK 496
+ ++
Sbjct: 763 AQFVR 767
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 91.3 bits (225), Expect = 4e-18
Identities = 87/398 (21%), Positives = 163/398 (40%), Gaps = 63/398 (15%)
Query: 170 ERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANK 229
ERD+ +PTGSGKTL++ +P++Q ++ + L+ L++ PT++LA Q+ +A
Sbjct: 24 ERDICVNSPTGSGKTLSYALPIVQ-LLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPA 82
Query: 230 IYLDKKRPLQVAXXXXXXXXXXXXXVIS--------------EDKYDIIISTPLRLITVV 275
+ L + + + E DI+++TP RL+ +
Sbjct: 83 VGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHI 142
Query: 276 QE-EALNLGKVKHLIFDEADKLFDKTF---------VEQTDD--ILSSCTD--------- 314
+ L +++L+ DE D+L + + + QT D + S T
Sbjct: 143 NNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSL 202
Query: 315 -----------------PHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIG---HKEAANI 354
P L K + SAT+ + ++ Q ++ P+ + G ++ +
Sbjct: 203 QTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKL 262
Query: 355 NIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLY---DKLNVD 411
+ + G + L+A+ + EGE IIF S+ + L L + K+
Sbjct: 263 ECLRLICETGMKPVYLVALLKS-WEGE---KCIIFTSSVETTRRLCKLLNFFGDPKIKAK 318
Query: 412 VIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHXX 471
Q R K ++ F+ GD+ L+ +D L RG+D KGV VINYD+P A+ ++H
Sbjct: 319 EYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRA 378
Query: 472 XXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQSGCEV 509
+ T + + ++ + C +
Sbjct: 379 GRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPI 416
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 89.7 bits (221), Expect = 1e-17
Identities = 119/554 (21%), Positives = 208/554 (37%), Gaps = 98/554 (17%)
Query: 5 RVLTRGASIRKNGDSNRTQSADFSMANEKKSKTAGSSSTPARDEQQLTKELDFFRNKKIM 64
R +++G + S+ ++S D + SK A + A+ Q+L ++ + + K++
Sbjct: 87 RKVSKGDEEESSESSSESESEDEVAVAARTSKKARLAERHAQKMQKLREKRE--KRKELR 144
Query: 65 NKVKSESTKGXXXXXXXXXXXXXXXXXXXXXXXLSGKIITKQDALKLRKSYQGNVSGNSV 124
+ KS+ + + + K + ++ + V
Sbjct: 145 KQKKSKGKENDNSEESSDEHAADRFALLRPPPSDDEEEVVKAEDSADQQESTDEEAPELV 204
Query: 125 PLPIGSFEDLIT--RFQFDKRLLNNLIENNFTEPTPIQSESIPILLH-ERDMIACAPTGS 181
P+ G ED+ +L L E F PT IQ+ ++P +H ++D++ A TGS
Sbjct: 205 PISTGEAEDMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGS 264
Query: 182 GKT-------LAFLIPLLQQIIND------------------------------------ 198
GKT LA ++ L Q+ I
Sbjct: 265 GKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGAS 324
Query: 199 -----------KTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXX 247
+ L GL+++PT+ELA Q+ A K ++VA
Sbjct: 325 DEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAA------KYTGIRVAAIFGGL 378
Query: 248 XXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKH---LIFDEADKLFDKTFVEQ 304
V+ + DI+++TP RL + + +LGK++ L+ DE D++ +K E+
Sbjct: 379 AVAKQERVLRQCP-DIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEE 437
Query: 305 TDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGH-----KEAANINIDQQ 359
+L +K + S + + + + +G K+ + I+
Sbjct: 438 LRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESL 497
Query: 360 LVFCGNEEGKLIAIR------QLVLEGEFKPPV------------------IIFLESITR 395
+ G + K++ I Q + E P+ I+F SI
Sbjct: 498 IEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDC 557
Query: 396 AKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLV 455
K L N +HA Q QR K +ERF+ LI TDV ARG+D V V
Sbjct: 558 VKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHV 617
Query: 456 INYDVPRSAQAYVH 469
I+Y VPR+++ YVH
Sbjct: 618 IHYQVPRTSENYVH 631
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 86.3 bits (212), Expect = 1e-16
Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 63/342 (18%)
Query: 129 GSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFL 188
GS+E L ++L L E F TP+QS +IP+ + +D+ A A TGSGKTLAF+
Sbjct: 7 GSWESLPVPLH--PQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFV 64
Query: 189 IPLLQQIIN-----DKTTVGLKGLIISPTKELANQI----------FIECSKLANKIYLD 233
IP+L+ ++ K+ VG +II+PT+ELA QI F E S++ +++
Sbjct: 65 IPILEILLRREEKLKKSQVG--AIIITPTRELAIQIDEVLSHFTKHFPEFSQI---LWIG 119
Query: 234 KKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLG------KVKH 287
+ P + + +II++TP RL + + +A L +
Sbjct: 120 GRNPGEDVER------------FKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDV 167
Query: 288 LIFDEADKLFDKTFVEQTDDILSSCTDPHLRKT-MFSATIPSNVEEIAQTIMNDPIRVII 346
L+ DEAD+L D F + IL P R+T +FSAT VE + + + +P+RV +
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFL--PKQRRTGLFSATQTQEVENLVRAGLRNPVRVSV 225
Query: 347 GHKEAANIN-------IDQQLVFCGNEEGKLIAIRQLV--LEGEFKPPVIIFLESIT--- 394
K A + ++ + C +E QLV L + ++F +
Sbjct: 226 KEKGVAASSAQKTPSRLENYYMVCKADE----KFNQLVHFLRNHKQEKHLVFFSTCACVE 281
Query: 395 -RAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLW 435
KAL E+L + + IH + + +R+KI F+ W
Sbjct: 282 YYGKAL--EVLVKGVKIMCIHG-KMKYKRNKIFMEFRKLQRW 320
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 85.9 bits (211), Expect = 2e-16
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 118 NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACA 177
++ G+ V + F D + + LL +++ F P+ +Q E IP + D++ A
Sbjct: 33 DIKGSYVSIHSSGFRDFLLK----PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQA 88
Query: 178 PTGSGKTLAFLIPLLQQI--INDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKK 235
+G GKT F++ LQQI +N + TV L++ T+ELA QI E + + Y+
Sbjct: 89 KSGMGKTAVFVLATLQQIEPVNGQVTV----LVMCHTRELAFQISKEYERFSK--YMPS- 141
Query: 236 RPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEALNLGKVKHLIFDEADK 295
++V+ V+ ++ +++ TP R++ +V+ + +L VKH + DE DK
Sbjct: 142 --VKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDK 199
Query: 296 LFDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIR 343
+ ++ + + + T + MFSAT+ ++ + + M D R
Sbjct: 200 MLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDVSR 247
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 84.3 bits (207), Expect = 4e-16
Identities = 57/191 (29%), Positives = 96/191 (49%), Gaps = 14/191 (7%)
Query: 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKE 214
+PTP+Q IP +L RD + CA TGSGKT AF++P+LQ++ D G+ L+++PT+E
Sbjct: 24 KPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSED--PYGIFCLVLTPTRE 81
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVIS-EDKYDIIISTPLRLIT 273
LA QI L +PL + + K ++I+TP RL
Sbjct: 82 LAYQIAERFRVLG--------KPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLAD 133
Query: 274 VVQ-EEALNLGKVKHLIFDEADKLFDKTFVEQTDDI--LSSCTDPHLRKTMFSATIPSNV 330
++ ++ K++ L+ DEAD+L ++ + T D+ + + + +FSAT+ +
Sbjct: 134 HLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTL 193
Query: 331 EEIAQTIMNDP 341
E+ N P
Sbjct: 194 RELQGLATNQP 204
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 82.4 bits (202), Expect = 2e-15
Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 157 TPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTV----GLKGLIISPT 212
T +Q +SIP+LL RD + + TGSGKTLA+ IP++Q + ++ + G L++ PT
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 213 KELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLI 272
+ELA Q F KL L + +I+ISTP RL+
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGI------NILISTPGRLV 368
Query: 273 TVVQE-EALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRK--TMFSATIPSN 329
++ + ++ +++ L+FDEAD++ D F + IL++ ++ + SAT+
Sbjct: 369 DHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEG 428
Query: 330 VEEIAQTIMNDPIRVIIGHKEAANIN 355
V +A ++DP+ + + K +N
Sbjct: 429 VTRLADISLHDPVSISVLDKSHDQLN 454
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 82.4 bits (202), Expect = 2e-15
Identities = 62/234 (26%), Positives = 104/234 (43%), Gaps = 22/234 (9%)
Query: 262 DIIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTM 321
+I+I+TP LI V++ L L +++ DEAD++ D F IL H+ ++
Sbjct: 384 EIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGFEPDVQKILE-----HMPQS- 437
Query: 322 FSATIPSNVEEIAQTIMNDPIRVIIGH---KEAANINIDQQLVFCGNEEGKLIAIRQLVL 378
E DP +++ K + ++Q VF +E K + +++
Sbjct: 438 ----------EARHDESEDPEKMLANFESGKRKPHERVEQ--VFLMSESEKRKKLLEILK 485
Query: 379 EGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLI 438
+G F P + IF+ L L N +H + Q QR+ + K G L+
Sbjct: 486 QG-FDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLV 544
Query: 439 CTDVLARGVDFKGVNLVINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDS 492
TDV G+D + V++V+NYD+ ++ Y+H AITF TK+DS
Sbjct: 545 TTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDS 598
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 80.9 bits (198), Expect = 5e-15
Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 65/333 (19%)
Query: 129 GSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFL 188
GSF+ + D RLL N++ + PTPIQ ++IP++L R ++ TGSGKTL +L
Sbjct: 10 GSFKTM----GLDYRLLRNIL---YEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYL 62
Query: 189 IPLLQQIINDKTTVGLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXX 248
IP +Q+ I+ G K L+I PTKEL Q +LA I
Sbjct: 63 IPAIQRAIS-----GEKTLVIVPTKELVIQARRVLKRLARGI------------------ 99
Query: 249 XXXXXXVISEDKYDII-ISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDD 307
E+ + +I I TP ++ E ++ L+ DE D++ ++ ++ D
Sbjct: 100 ---------EEAWKLIEICTPGKI------EGMS---ADMLVVDEIDRILEEPSLKSVFD 141
Query: 308 ILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEE 367
++ +K FSAT+P + P+ + + E + F E
Sbjct: 142 RINESLS--CQKVFFSATLPDH-----------PLNMKVVEIETRINETVKHFFFYIPSE 188
Query: 368 GKLIAIRQLVLEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIE 427
K A+ +++ + I+F + + L L + I++ R
Sbjct: 189 SKEAALLRIL---DKTRKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFR 245
Query: 428 RFKSGDLWCLICTDVLARGVDFKGVNLVINYDV 460
F + L+ TDV ARG+D ++ V+NYD+
Sbjct: 246 DFNTSKFSILVVTDVAARGLDIPYLDTVVNYDL 278
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 80.1 bits (196), Expect = 8e-15
Identities = 72/267 (26%), Positives = 113/267 (41%), Gaps = 53/267 (19%)
Query: 207 LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIS 266
+I++PT+ELA Q + E +K A K L+VA + +I++
Sbjct: 120 VILTPTRELAMQTYKEANKFA------KPLGLKVACTYGGVGISEQIADLKRGA-EIVVC 172
Query: 267 TPLRLITVVQEEA---LNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMFS 323
TP R+I V+ + NL +V +L+ DEAD++F K F Q
Sbjct: 173 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQ------------------- 213
Query: 324 ATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFK 383
+G K +I Q V C E K + + +L+ +
Sbjct: 214 ----------------------VGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYDE 250
Query: 384 PPVIIFLESITRAKALFHELLYDKLN-VDVIHAERTQVQRDKIIERFKSGDLWCLICTDV 442
I+F++ +A + +L+ N V +H Q RD I FK+G + L+ T V
Sbjct: 251 GSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSV 310
Query: 443 LARGVDFKGVNLVINYDVPRSAQAYVH 469
ARG+D K + LV+NYD P + YVH
Sbjct: 311 AARGLDVKNLILVVNYDCPNHYEDYVH 337
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 79.3 bits (194), Expect = 1e-14
Identities = 95/395 (24%), Positives = 156/395 (39%), Gaps = 91/395 (23%)
Query: 155 EPTPIQSESIPILLH---ERDMIACAPTGSGKTLAFLIPLLQQIINDKT----TVGLKGL 207
+PT IQ ++IP ++ + D A TGSGKTL++L+P++ I+N T T G L
Sbjct: 166 KPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFAL 225
Query: 208 IISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIST 267
+I+PT+ELA+QI+ CS L + + V + II T
Sbjct: 226 VIAPTRELASQIYHVCSTLVSCCH------YLVPCLLIGGERKKSEKARLRKGCNFIIGT 279
Query: 268 PLRLI-----TVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTD-------- 314
P R++ T V +E L+ +++++ DE DKL + F E +I+ D
Sbjct: 280 PGRVLDHLQNTKVIKEQLS-QSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKF 338
Query: 315 ---PH-LRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANI---------------- 354
PH L + SAT+ V + + D + G K+ ++I
Sbjct: 339 PKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVP 398
Query: 355 -------------NIDQQLVFCGNEEGKLIAIRQLVL-----------------EGEFKP 384
NI + + G + L R +V +G K
Sbjct: 399 PKLRLVTLAATLNNITKDFIASGQQSKTL---RTIVFVSCSDSVEFHYDAFSGSDGHHKN 455
Query: 385 PVIIFLESITRAKALFHELLYDKLNVDVI----HAERTQVQRDKIIERF------KSGDL 434
+ +T+ +F D + DV+ H +Q R ++ F G
Sbjct: 456 LTGDSVRLLTKGNTMF-PCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKH 514
Query: 435 WCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ CTDV +RG+D V VI D P + + ++H
Sbjct: 515 LIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLH 549
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 79.3 bits (194), Expect = 1e-14
Identities = 92/409 (22%), Positives = 168/409 (40%), Gaps = 50/409 (12%)
Query: 104 TKQDALKLRKSYQGNV-----SGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTP 158
+K + KL K + N G P G+ E ++ D RL NL
Sbjct: 59 SKAETDKLNKHCEENTIMVDQDGVETPADYGT-ERMVAHAIEDHRLAANLQRIKVHILNA 117
Query: 159 IQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQ-------QIINDKTTVGLKGLIISP 211
+Q +SI + R ++ APTG GKT AFLIP ++ + N TT LI++
Sbjct: 118 VQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILAN 177
Query: 212 TKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRL 271
T L Q+F C L I ++ P++ ++D+ DI T +L
Sbjct: 178 TNSLVEQLFNRCEVLLGLIDMEDIIPIR----DIKIEKLVASYQFTKDQCDIAFCTMGKL 233
Query: 272 ITVVQEEALNLGKVKHLIFDEADKLFD-KTFVEQTDDILSSCTDP---HLRKTMFSATIP 327
++++ + L +K +I DE+DK+ D F D +L + +L+ FSA+
Sbjct: 234 KASIEDKTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSAS-- 291
Query: 328 SNVEEIAQTIMNDPIRVIIGHKEAANIN-------IDQQLVFCGNEE----------GKL 370
N E + ++G + I+ I Q+++ G + K+
Sbjct: 292 HNRNEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPWIVKM 351
Query: 371 IAIRQLV----------LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQV 420
I +L+ EG +K + IF E+++R + L N + + +
Sbjct: 352 NIICKLLDDDLKEMGSTKEGPWKHTIAIFCETVSRVIQVTMALRQMGYNFKPVCSSVLKQ 411
Query: 421 QRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
Q+ + + ++ ++CT++++RG+D V I ++ +Y+H
Sbjct: 412 QQAITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMH 460
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 79.0 bits (193), Expect = 2e-14
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 53/207 (25%)
Query: 263 IIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMF 322
II+ TP R+ ++ L+ +K + DEAD++ F +Q DI + + +
Sbjct: 62 IIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNS-NTQVVLL 120
Query: 323 SATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEF 382
SATIPS+V E+ + M DPIR I+ KE
Sbjct: 121 SATIPSDVLEVTKKFMRDPIR-ILVKKE-------------------------------- 147
Query: 383 KPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDV 442
EL V +H + Q +RD ++ ++SG LI TD+
Sbjct: 148 -------------------ELTLKDFTVSAMHGDMDQKERDVVMREYRSGSSRVLITTDL 188
Query: 443 LARGVDFKGVNLVINYDVPRSAQAYVH 469
L RG+D + ++LVINYD P + + Y+H
Sbjct: 189 LPRGIDVQQLSLVINYDPPTNRENYIH 215
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 78.2 bits (191), Expect = 3e-14
Identities = 83/397 (20%), Positives = 174/397 (42%), Gaps = 36/397 (9%)
Query: 123 SVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSG 182
++P P+ SFE R F+ +L L + + PTPIQ+++ I ++++ + G+G
Sbjct: 26 NLPEPVLSFE----RSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTG 81
Query: 183 KTLAFLIPLLQQIINDKTTV-GLKGLIISPTKELANQIFIECSKLA---NKIYLDKKRPL 238
KTL +L+P + ++ N + + KG I+ I ++C + A + L PL
Sbjct: 82 KTLGYLLPGIMKMHNQRGLMQHKKGPIV--------LILVDCREAAVMVQREVLYYTNPL 133
Query: 239 QVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITVV--QEEALNLGKVKHLIFDEADKL 296
++ + D+++++ RL+ ++ ++ + L + +L+ D D++
Sbjct: 134 ELRTHCLLGNSQWQ----GHAECDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRM 189
Query: 297 FDKTFVEQTDDILSSCTDPHLRKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINI 356
D +L PH + + S + SN++ +A + + +G E NI +
Sbjct: 190 IDVGLEGNICRLLCRLR-PHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVG--EINNIGV 246
Query: 357 DQQLVFCGNE-EGKLIAIRQLVLE-------GEFKPPVIIFLESITRAKALFHELLYDKL 408
Q + E L + +L+ E + V+I+++ + L +L+ + +
Sbjct: 247 RLQNIRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELV-DLIRNCV 305
Query: 409 NVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYV 468
+ IH RT + II F +G ++ T + + +D G+ VINYD P + YV
Sbjct: 306 PCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYV 365
Query: 469 HXXXXX--XXXXXXXKAITFYTKQDSLAIKPIINVMK 503
+ I+F+T + + +++ +K
Sbjct: 366 QRMSRTGCLSYNRNCEVISFFTMANYKLVTEVVDFLK 402
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 77.8 bits (190), Expect = 4e-14
Identities = 80/318 (25%), Positives = 134/318 (41%), Gaps = 57/318 (17%)
Query: 205 KGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDII 264
K LI+ P++ELA Q + I K R L + + E+ DI+
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLS----VLENGVDIV 343
Query: 265 ISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDK---TFVEQTDDILSSCTD--PHLRK 319
+ TP RL +V LNL +V+ L+ DEAD L + F+ + + + T L+
Sbjct: 344 VGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV 403
Query: 320 TMFSATIPS-NVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKL-------- 370
+ SAT+ S +V+++++ IM+ P V + +++ + +V + +L
Sbjct: 404 IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH 463
Query: 371 -----IAIRQLVLEGEFKPPV------IIFLESITRA---KALFHELLYDKLNVDVIHAE 416
+ + G P + I+ E RA + +++ + +D + E
Sbjct: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
Query: 417 RTQVQ-------------------------RDKIIERFKSGDLWCLICTDVLARGVDFKG 451
+ +Q R + +ERFK GD+ LICTDV ARG+D G
Sbjct: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
Query: 452 VNLVINYDVPRSAQAYVH 469
V VIN +P Q YVH
Sbjct: 584 VPYVINVTLPDEKQNYVH 601
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 77.0 bits (188), Expect = 7e-14
Identities = 80/350 (22%), Positives = 152/350 (42%), Gaps = 47/350 (13%)
Query: 192 LQQIINDKTTV-------GLKGLIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXX 244
L+Q ++DK+ L GL+++PT+ELA Q+ +A + ++ A
Sbjct: 369 LKQELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVA------RFTGIKTAILV 422
Query: 245 XXXXXXXXXXVISEDKYDIIISTPLRLITVVQEEAL---NLGKVKHLIFDEADKLFDKTF 301
+++ + +I+++TP RL +++E+ NL +++ L+ DEAD++ +K
Sbjct: 423 GGMSTQKQQRMLNR-RPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGH 481
Query: 302 VEQTDDILSSCTD----PHLRKTMFSATIP------------SNVEEIAQTIMNDPIRVI 345
+ +L D P + +FSAT+ + +++ +T D +
Sbjct: 482 FAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQK 541
Query: 346 IGHK-----------EAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPVIIFLESIT 394
IG + EA + + + C +E L+ ++ ++F SI+
Sbjct: 542 IGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLM---QYPGRSLVFANSIS 598
Query: 395 RAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNL 454
K L L + +HA Q QR + +E+F + L+ TDV ARG+D V
Sbjct: 599 CIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQH 658
Query: 455 VINYDVPRSAQAYVHXXXXXXXXXXXXKAITFYTKQDSLAIKPIINVMKQ 504
VI+Y VPR+++ YVH ++ +D + K I +K+
Sbjct: 659 VIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKK 708
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 74.3 bits (181), Expect = 5e-13
Identities = 74/323 (22%), Positives = 131/323 (39%), Gaps = 44/323 (13%)
Query: 159 IQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDK-------TTVGLKGLIISP 211
+Q SI ++ R ++ APTG GKT AFLIP ++ + ++ T LI++
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 212 TKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRL 271
T L +Q+F C + +D P++ ++ + DI T +L
Sbjct: 79 TSALVDQLFNRCELILGLQCMDNVEPIR----DIKIDKLVANHPFTKGQCDIAFCTIGKL 134
Query: 272 ITVVQEEALNLGKVKHLIFDEADKLFDK-TFVEQTDDILSSCTD---PHLRKTMFSATIP 327
++ + L +K +I DEADK+ D FV + IL + +L+ FSAT
Sbjct: 135 KATIECGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATYN 194
Query: 328 SNVE-EIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLVLEGEFKPPV 386
N IA T++ Q+ G ++ +G + +
Sbjct: 195 KNANGTIALTVL--------------------QMRMLGEDDP--------CKDGPYNETI 226
Query: 387 IIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARG 446
IF E++ R + L N + + T+ Q+ + + + ++CT++LARG
Sbjct: 227 AIFCETVQRVTQVTMTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARG 286
Query: 447 VDFKGVNLVINYDVPRSAQAYVH 469
+D V I ++ Y H
Sbjct: 287 IDVSSVKHTIIMEMSADFDTYKH 309
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 73.6 bits (179), Expect = 8e-13
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 45 ARDEQQLTKELDFFRNKKIMNKVKSESTKGXXXXXXXXXXXXXXXXXXXXXXXLSGKIIT 104
AR+ Q LTK+L FF + N ++T+ + ++ +
Sbjct: 279 ARNAQNLTKKLTFFNENYLKN---DQNTRWNNLDAPPSRGTSKWENRGARDERIEQELFS 335
Query: 105 KQDALKLRKSYQG---NVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQS 161
Q + Y+ +G+ VP PI F DL + + N+ + PTP+Q
Sbjct: 336 GQLSGINFDKYEEIPVEATGDDVPQPISLFSDL----SLHEWIEENIKTAGYDRPTPVQK 391
Query: 162 ESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND---------KTTVGLK-----GL 207
SIP L RD+++CA TGSGKT AFL+PL+ I+ D ++ G K L
Sbjct: 392 YSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSAL 451
Query: 208 IISPTKELANQI 219
++SPT+EL+ Q+
Sbjct: 452 VLSPTRELSLQV 463
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 69.7 bits (169), Expect = 1e-11
Identities = 80/337 (23%), Positives = 147/337 (42%), Gaps = 35/337 (10%)
Query: 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKE 214
E + ++P+ L + C GSGKTL +L+ L+ +IN + + ++ +I+ PT+E
Sbjct: 62 ESNSVTETTVPLTLRQ----ICQ--GSGKTLTYLL-LIFSLINPQRS-SVQAVIVVPTRE 113
Query: 215 LANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPLRLITV 274
L Q+ LA K +D K +A + +E I+++T L +
Sbjct: 114 LGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPA-ILVATVASLCHM 172
Query: 275 VQEEALNLGKVKHLIFDEADKLF-DKTFVEQTDDILSSCTDPHLRKTMF-SATIPSNVEE 332
+++ + V+ L+ DE D LF V +L+S + R+T+F SA+IP +
Sbjct: 173 LEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 232
Query: 333 IAQTIMN-----DPIRVIIGHKEAANINIDQQLVFCG--NEEGKLIAIRQLVLEGEFKPP 385
+ I D + V + + + + V C N+ L+A+ LE +
Sbjct: 233 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLAL----LESDAPES 288
Query: 386 VIIFL-ESITRAK--------ALFHELLYDK----LNVDVIHAERTQVQRDKIIERFKSG 432
IIF+ E ++K L E L L + ++ + R + + G
Sbjct: 289 AIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQG 348
Query: 433 DLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVH 469
+ L+ TD+ ARG+D + N+D+P++ Y+H
Sbjct: 349 GGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 385
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 63.2 bits (152), Expect = 1e-09
Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 52/254 (20%)
Query: 101 KIITKQDALKLRKSYQGNVSGNSVPLPIGSFEDLITRFQFDKRLLNNLIENNFTEPTPIQ 160
K I +++LKL+ S + S N +P PI + KR+ NL++ +Q
Sbjct: 114 KEIISKESLKLQDSRK-KTSENIIPSPIQTVAI--------KRISKNLMDPK------LQ 158
Query: 161 SESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIIND-----------KTTVGLKGLII 209
+I A TGSGKT+A+LIPL+ + + V ++ +I+
Sbjct: 159 IHAI-----------AAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIIL 207
Query: 210 SPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIISTPL 269
PT EL +Q++ SK + L+ + + +++ DI+++TP
Sbjct: 208 VPTHELVDQVYETVSKTKTLLGLNSFKWDKATSYRDLLENI-------KNRIDILVTTPG 260
Query: 270 RLITVVQEEALN-----LGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDPHLRKTMF-S 323
+L+ + + L KV ++ DEAD L D++++E+T + P++ +F S
Sbjct: 261 KLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRI--PNINHLIFCS 318
Query: 324 ATIPSNVEEIAQTI 337
ATIP + Q +
Sbjct: 319 ATIPQEFNKTMQRL 332
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 62.0 bits (149), Expect = 2e-09
Identities = 66/311 (21%), Positives = 126/311 (40%), Gaps = 52/311 (16%)
Query: 207 LIISPTKELANQIFIECSKLANKIYLDKKRPLQVAXXXXXXXXXXXXXVISEDKYDIIIS 266
+I+ PT+EL Q F A+ + K R + +A E DI++
Sbjct: 309 VILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTL----ETGCDIVVG 364
Query: 267 TPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTF-----VEQTDDILSSCTDPHLRKTM 321
TP R+ ++ L ++ ++ DE D+ +E +L R+ +
Sbjct: 365 TPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQV 424
Query: 322 F--SATIPS-NVEEIAQTIMNDP--------------IRVIIGHKEAAN----------- 353
SAT+ + V A M+ P + ++ H +A+
Sbjct: 425 IACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQ 484
Query: 354 INIDQQLVFCGNE------EGKLIAIRQLVLEGEF---------KPPVIIFLESITRAKA 398
++++ V G++ + I++ +L+G + I+F + +
Sbjct: 485 VHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTKQQCDH 544
Query: 399 LFHELLYDKLNVDVIHAERTQVQRDKIIERFKSGDLWCLICTDVLARGVDFKGVNLVINY 458
+ H L + L+ +H +R+ +R +E FK G + L+C+DV+ARG+D +GV VI+
Sbjct: 545 MEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVPFVISV 604
Query: 459 DVPRSAQAYVH 469
+P YVH
Sbjct: 605 TLPDEKSMYVH 615
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 57.8 bits (138), Expect = 4e-08
Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 263 IIISTPLRLITVVQEEALNLGKVKHLIFDEADKLFDKTFVEQTDDILSSCTDP-----HL 317
++++TP L+ +++ + L K+L+ DEAD++ D F Q IL T P H+
Sbjct: 241 LLVATPGGLVDLMERGKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHI 300
Query: 318 RKTMFSATIPSNVEEIAQTIMNDPIRVIIGHKEAANINIDQQLVFCGNEEGKLIAIRQLV 377
MFSAT P+ ++ +A+ +++ I + +G + + I Q++V+ + + + L
Sbjct: 301 --MMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSETITQEVVWVEEPDKRSFLLDLLN 358
Query: 378 LEGEFKPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQRD 423
G+ ++F+E+ +L + L ++ IH +++Q R+
Sbjct: 359 APGK-DSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDRE 403
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 56.6 bits (135), Expect = 1e-07
Identities = 36/87 (41%), Positives = 54/87 (61%), Gaps = 5/87 (5%)
Query: 142 KRLLNNLIENNFTEPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTT 201
+RLL + E + +P+P Q ESIPI L RD++A A G+GK+ A IPLL+++ K T
Sbjct: 58 RRLLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDLKKDT 117
Query: 202 VGLKGLIISPTKELA---NQIFIECSK 225
+ + ++I PT A +QI I+ SK
Sbjct: 118 I--QTIVIVPTGGPALQVSQICIQVSK 142
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,968,225
Number of Sequences: 60738
Number of extensions: 1128310
Number of successful extensions: 4424
Number of sequences better than 1.0e-05: 232
Number of HSP's better than 0.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3436
Number of HSP's gapped (non-prelim): 335
length of query: 579
length of database: 30,389,216
effective HSP length: 112
effective length of query: 467
effective length of database: 23,586,560
effective search space: 11014923520
effective search space used: 11014923520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)