ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4465 good KL KOG1131 Replication, recombination and repair RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3
r_klactIII4465 good KL KOG1131 Transcription RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4465 1577323 1579656 778
(778 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER171w [KL] KOG1131 RNA polymerase II transcription initiation/... 1285 0.0
SPAC1D4.12 [KL] KOG1131 RNA polymerase II transcription initiati... 1024 0.0
Hs15834617 [KL] KOG1131 RNA polymerase II transcription initiati... 754 0.0
7291258 [KL] KOG1131 RNA polymerase II transcription initiation/... 748 0.0
At1g03190 [KL] KOG1131 RNA polymerase II transcription initiatio... 717 0.0
CE28992 [KL] KOG1131 RNA polymerase II transcription initiation/... 700 0.0
ECU06g0200 [KL] KOG1131 RNA polymerase II transcription initiati... 646 0.0
Hs14042978 [L] KOG1132 Helicase of the DEAD superfamily 155 3e-37
7290625 [L] KOG1132 Helicase of the DEAD superfamily 149 2e-35
CE15894 [L] KOG1132 Helicase of the DEAD superfamily 138 3e-32
SPAC3G6.11 [L] KOG1133 Helicase of the DEAD superfamily 137 5e-32
At1g79950 [L] KOG1132 Helicase of the DEAD superfamily 131 5e-30
7290134 [L] KOG1133 Helicase of the DEAD superfamily 128 4e-29
Hs13787197 [L] KOG1133 Helicase of the DEAD superfamily 125 3e-28
Hs22057889 [L] KOG1133 Helicase of the DEAD superfamily 117 5e-26
Hs7706541_1 [L] KOG1132 Helicase of the DEAD superfamily 117 5e-26
Hs14790174_1 [L] KOG1132 Helicase of the DEAD superfamily 117 5e-26
YPL008w [L] KOG1133 Helicase of the DEAD superfamily 105 3e-22
At1g79890 [L] KOG1133 Helicase of the DEAD superfamily 104 5e-22
ECU02g1090 [L] KOG1132 Helicase of the DEAD superfamily 103 8e-22
CE03493 [L] KOG1133 Helicase of the DEAD superfamily 100 1e-20
CE17764 [L] KOG1132 Helicase of the DEAD superfamily 97 7e-20
ECU08g1120 [L] KOG1133 Helicase of the DEAD superfamily 94 6e-19
At1g20750 [L] KOG1132 Helicase of the DEAD superfamily 77 1e-13
Hs13787200 [L] KOG1133 Helicase of the DEAD superfamily 72 4e-12
Hs14765656 [L] KOG1133 Helicase of the DEAD superfamily 70 2e-11
At1g20720 [L] KOG1132 Helicase of the DEAD superfamily 65 3e-10
>YER171w [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 778
Score = 1285 bits (3324), Expect = 0.0
Identities = 638/780 (81%), Positives = 691/780 (87%), Gaps = 5/780 (0%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
MKFYIDDLPVLFPYPKIYPEQY YMCDIKKTLD GGNSILEMPSGTGKTVSLLSLT+AYQ
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 MHYPEHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRV 120
MHYPEHRKIIYCSRTMSEIEKALVELE+LMDYR+KELG+ EDFRGLGLTSRKNLCLHP V
Sbjct: 61 MHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEV 120
Query: 121 SKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFER 180
SKERKG VVDEKCRRMTNGQA++K EE+P+ANVELC+YHEN+YN +V DYLP GVFSFE+
Sbjct: 121 SKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEK 180
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
L+++CEEK +CPYF VRRMIS+CNIIIYSYHYLLDPKIAERVS EVSKD+IVIFDEAHNI
Sbjct: 181 LLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI 240
Query: 241 DNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIXX 300
DNVCIE GANALD ++ E++KVDSQKLQDEYEKLV GL ++DI
Sbjct: 241 DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILT 300
Query: 301 XXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSFL 360
D+L EAIPGNIRRA HF+SFLKR IEYLKTRMKVLHVISETP SFL
Sbjct: 301 DQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFL 360
Query: 361 LHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLII 420
HLKQLTFIERKPLRFC F ALKDIATFATLISTYE+GFLLII
Sbjct: 361 QHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLII 420
Query: 421 EPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQ 480
EPYEIENAAVPNPI+RFTCLDASIAIKP+FERFSSVIITSGTISPLDMYP+MLNF+TVLQ
Sbjct: 421 EPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ 480
Query: 481 QSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVF 540
+SY+MTLAKKSFLPMI+TKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDG+VVF
Sbjct: 481 KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVF 540
Query: 541 FPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLS 600
FPSYLYMESI+SMWQTMGILDEVWK+KLILVETPDAQET+LALETYRKACSNGRGAILLS
Sbjct: 541 FPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLS 600
Query: 601 VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMR 660
VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEF+RENY+IRENDFLSFDAMR
Sbjct: 601 VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRENDFLSFDAMR 660
Query: 661 HAAQCLGRVLRGKDDYGVMVLADRRFARKKSQLPKWIAQGLSDADMNLSTDMAIANTKQF 720
HAAQCLGRVLRGKDDYGVMVLADRRF+RK+SQLPKWIAQGLSDAD+NLSTDMAI+NTKQF
Sbjct: 661 HAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF 720
Query: 721 LRTMAQPTDPKDQEGVSVWSHAQLLAHQESVKKKQHNGFVDSDVTE---VKDNDGDIEMK 777
LRTMAQPTDPKDQEGVSVWS+ L+ HQ S +K GF++++ E +D D DIEM+
Sbjct: 721 LRTMAQPTDPKDQEGVSVWSYEDLIKHQNS--RKDQGGFIENENKEGEQDEDEDEDIEMQ 778
>SPAC1D4.12 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 772
Score = 1024 bits (2647), Expect = 0.0
Identities = 497/774 (64%), Positives = 611/774 (78%), Gaps = 11/774 (1%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
MKFYIDDLP+LFPYP+IYPEQYQYMCD+K +LDAGG ++LEMPSGTGKT+SLLSL V+YQ
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 61 MHYPEHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRV 120
HYPEHRK+IYCSRTMSEI+KAL EL+ LM YR+ +LG+ E F GLGLTSRKNLCLHP V
Sbjct: 61 QHYPEHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSV 120
Query: 121 SKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFER 180
+E+ GNVVD +CR +T G R+++ D V C++H+N+ + + + GV++ +
Sbjct: 121 RREKNGNVVDARCRSLTAGFVREQRLAGMD--VPTCEFHDNLEDLEPHSLISNGVWTLDD 178
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
+ + E+ CPYFTVRRM+ CN+IIYSYHYLLDPKIAERVS+E+SKD IV+FDEAHNI
Sbjct: 179 ITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 241 DNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIXX 300
DNVCIE +L++KV E+K+ DS+KLQDEY+KLV GL+ ++
Sbjct: 239 DNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDAN-AA 297
Query: 301 XXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSFL 360
D+LKEA+PGNIRRA HFI+FLKRF+EYLKTRMKVLHVI+ETP SFL
Sbjct: 298 NDEDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFL 357
Query: 361 LHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLII 420
H+K +TFI++KPLRFC F++L+ + FATL++TYE GF+LI+
Sbjct: 358 QHVKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILIL 417
Query: 421 EPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQ 480
EP+E ENA VPNPI+RF+CLDASIAIKP+FERF SVIITSGT+SPLDMYPKML F TV+Q
Sbjct: 418 EPFETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQ 477
Query: 481 QSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVF 540
+SY M+LA+ FLPM++T+GSDQVAISS+FE RNDPS+VRNYG++LVEF+KITPDGLV F
Sbjct: 478 ESYGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAF 537
Query: 541 FPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLS 600
FPSYLY+ESI+S WQ+MGILDEVWKYKLILVETPD ET LALETYR ACSNGRGA+LLS
Sbjct: 538 FPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLLS 597
Query: 601 VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMR 660
VARGKVSEG+DFDH YGR V+M GIP+QYTESR+LKARLEFLR+ YQIRE DFL+FDAMR
Sbjct: 598 VARGKVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFLRDTYQIREADFLTFDAMR 657
Query: 661 HAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANTK 718
HAAQCLGRVLRGKDD+G+MVLAD+R+ R K+++LPKWI Q +++ NLSTDM++A K
Sbjct: 658 HAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKLPKWIQQYITEGATNLSTDMSLALAK 717
Query: 719 QFLRTMAQPTDPKDQEGVSVWSHAQLLAHQE------SVKKKQHNGFVDSDVTE 766
+FLRTMAQP DQEG+S WS LL HQ+ ++++ +H +D DV E
Sbjct: 718 KFLRTMAQPFTASDQEGISWWSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771
>Hs15834617 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 760
Score = 754 bits (1948), Expect = 0.0
Identities = 379/756 (50%), Positives = 516/756 (68%), Gaps = 7/756 (0%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
MK +D L V FPY IYPEQ+ YM ++K+TLDA G+ +LEMPSGTGKTVSLL+L +AYQ
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 MHYP-EHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPR 119
YP E K+IYCSRT+ EIEK + EL L+++ K+ G F GL L+SRKNLC+HP
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
V+ R G VD KC +T R + + D ++ C ++E + LP G+++ +
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQH--DTSLPHCRFYEEFDAHGREVPLPAGIYNLD 178
Query: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
L + CPYF R I N+++YSYHYLLDPKIA+ VSKE+++ A+V+FDEAHN
Sbjct: 179 DLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHN 238
Query: 240 IDNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIX 299
IDNVCI+ L + V +K+ D Q+L+DEY +LV GLR +
Sbjct: 239 IDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREAS-A 297
Query: 300 XXXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSF 359
+++L+EA+PG+IR A HF+ FL+R +EY+K R++V HV+ E+P +F
Sbjct: 298 ARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF 357
Query: 360 LLHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLI 419
L L Q I+RKPLRFC F+ L +A FATL+STY GF +I
Sbjct: 358 LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTII 417
Query: 420 IEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVL 479
IEP++ + NPI+ F+C+DAS+AIKP+FERF SVIITSGT+SPLD+YPK+L+F V
Sbjct: 418 IEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVT 477
Query: 480 QQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVV 539
+++MTLA+ PMI+ +G+DQVAISS+FE R D +++RNYG++L+E + + PDG+V
Sbjct: 478 MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537
Query: 540 FFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILL 599
FF SY YMES ++ W GIL+ + + KL+ +ET D ET++ALE Y++AC NGRGAILL
Sbjct: 538 FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILL 597
Query: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAM 659
SVARGKVSEGIDF H YGR V+M G+P+ YT+SRILKARLE+LR+ +QIRENDFL+FDAM
Sbjct: 598 SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAM 657
Query: 660 RHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANT 717
RHAAQC+GR +RGK DYG+MV AD+RFAR K+ +LP+WI + L+DA++NL+ D +
Sbjct: 658 RHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVA 717
Query: 718 KQFLRTMAQPTDPKDQEGVSVWSHAQLLAHQESVKK 753
K FLR MAQP +DQ G+S+ S Q L +E++K+
Sbjct: 718 KYFLRQMAQPFHREDQLGLSLLSLEQ-LESEETLKR 752
>7291258 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 745
Score = 748 bits (1930), Expect = 0.0
Identities = 371/737 (50%), Positives = 507/737 (68%), Gaps = 6/737 (0%)
Query: 25 MCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQMHYPEH-RKIIYCSRTMSEIEKAL 83
M ++K++LDA G+ +LEMPSGTGKT +LLSL VAY + +PE RK+IYCSRT+ EIEK +
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60
Query: 84 VELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQARK 143
EL++LM Y + F GL L+SRKN+C+HP VSKER+G VD KC +T R+
Sbjct: 61 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 120
Query: 144 KKEENPDANVELCDYHENMYNYDVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMISMC 203
+ E D +C Y E LP GV+S + L + + CPYF R I+
Sbjct: 121 RHEM--DTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHA 178
Query: 204 NIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNIDNVCIEXXXXXXXXXXXXXXXXG 263
+I++YSYHYLLDPKIA+ VSKE+S+++ V+FDEAHNIDNVCI+
Sbjct: 179 HIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNA 238
Query: 264 ANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIXXXXXXXXXXXXXXSNDILKEAIPG 323
N L + V+++++ D+ +L +EY+++V GL+ + + ND+L E +PG
Sbjct: 239 LNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVL-PNDVLTEVVPG 297
Query: 324 NIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSFLLHLKQLTFIERKPLRFCXXXXXX 383
NIR A HF+SFL+RFIEY+KTR++V HV+ E+P FL + IERKPLRFC
Sbjct: 298 NIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSS 357
Query: 384 XXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLIIEPYEIENAAVPNPIVRFTCLDAS 443
+ AL I FATL+STY GF +IIEP++ + V NPI+ F+CLD+S
Sbjct: 358 LLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSS 417
Query: 444 IAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMILTKGSDQ 503
IA+ P+F RF +V+ITSGT+SP+DMYPK+L+F+ V+ S++MTLA+ LPMI++KG+DQ
Sbjct: 418 IAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQ 477
Query: 504 VAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEV 563
V ISS+FE R D +++RNYG +LVE AK PDG+V FF SYLY+ES+++ W GI+D +
Sbjct: 478 VTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTL 537
Query: 564 WKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMI 623
+YKL+ +ET D ET+ AL Y KAC GRGA+LL+VARGKVSEG+DFDH YGR VLM
Sbjct: 538 LRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMF 597
Query: 624 GIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLAD 683
GIP+ YT+SRILKARL++LR+ +QIRENDFL+FDAMRHAAQC+GR LRGK DYG+M+ AD
Sbjct: 598 GIPYVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFAD 657
Query: 684 RRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANTKQFLRTMAQPTDPKDQEGVSVWSH 741
+RF+R K+S+LPKWI + L D+ NLST+ A+ +++LR MAQP +DQ G+S+ +
Sbjct: 658 KRFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTL 717
Query: 742 AQLLAHQESVKKKQHNG 758
AQL ++ ++Q G
Sbjct: 718 AQLENMEQEKLERQAQG 734
>At1g03190 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 758
Score = 717 bits (1850), Expect = 0.0
Identities = 360/764 (47%), Positives = 497/764 (64%), Gaps = 12/764 (1%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
M F I+D+ V FPY IYPEQY+YM ++K+ LDA G+ +LEMP+GTGKT++LLSL +Y+
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 MHYPEHR-KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPR 119
+ P+ K++YC+RT+ E+EK L EL+ L DY+ + LG LGL+SRKNLC++ +
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
V + VD CR+ T R ENP NVELCD+ EN LPPGV++ E
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENP--NVELCDFFENYEKAAENALLPPGVYTLE 178
Query: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
L F + + CPYF R MI N+I+YSY YLLDPK+A +SKE+ K+++V+FDEAHN
Sbjct: 179 DLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHN 238
Query: 240 IDNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIX 299
IDNVCIE N + ++++ K D+ +L+ EY +LV GL
Sbjct: 239 IDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRG-D 297
Query: 300 XXXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSF 359
+DILKEA+PGNIRRA HF+ L+R ++YL R+ +V E+P SF
Sbjct: 298 LSGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSF 357
Query: 360 LLHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLI 419
+ L IE+K L+FC F ++ + FATL+ TY GF +I
Sbjct: 358 VSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSII 417
Query: 420 IEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVL 479
IEPY+ +P+PI++ +C DAS+AIKP+F+RF SV+ITSGT+SP+D+YP++LNF V+
Sbjct: 418 IEPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVV 477
Query: 480 QQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVV 539
+S+ M++ + PM+LT+GSDQ+ +S++F++R+DP +VRNYG +LVE I PDG+V
Sbjct: 478 SRSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVC 537
Query: 540 FFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILL 599
FF SY YM+ II+ W GIL E+ + KL+ +ET D ET LAL+ YR+AC GRGA+
Sbjct: 538 FFVSYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFF 597
Query: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAM 659
SVARGKV+EGIDFD YGR V+M G+PFQYT S+IL+ARLE+L + +QI+E DFL+FDA+
Sbjct: 598 SVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDAL 657
Query: 660 RHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANT 717
R AAQC+GRV+R K DYG+M+ AD+R++R K+S+LP WI L DA +NLSTDMAI
Sbjct: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIA 717
Query: 718 KQFLRTMAQPTDPKDQEGVSVWSHAQLLAHQESVKKKQHNGFVD 761
++FLR MAQP D G + L QE ++K G D
Sbjct: 718 REFLRKMAQPYDKAGTMG------RKTLLTQEDLEKMAETGVQD 755
>CE28992 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 751
Score = 700 bits (1807), Expect = 0.0
Identities = 361/757 (47%), Positives = 502/757 (65%), Gaps = 18/757 (2%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
M+ ID L VLFPY +YPEQ YM ++KK LDA G+ +LEMPSGTGKTVSLLSL +AY
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 61 MHYPEHR-KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPR 119
+ YP+ K++YCSRT+ EIEK + E++ L DY KE G + +++RKNLC++
Sbjct: 61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEP 120
Query: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
V+ R GN VD C+++T AR+K+ E+P +E CDY EN V + + E
Sbjct: 121 VAALRFGNTVDSACQKLTASSARQKRAEDP--TLEACDYFENFEAKSVP------MQNGE 172
Query: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
L EK++CPYFT R+ I+ +I++YSYHY+LDPKIAE VSK+ S+ ++V+FDEAHN
Sbjct: 173 DLRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHN 232
Query: 240 IDNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIX 299
IDNVCIE +L+ V MK +S+KLQ EY+KLV GL+ ++
Sbjct: 233 IDNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTE-R 291
Query: 300 XXXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSF 359
+ IL EA+PGNIR+A HF+ FLKRF+EY++ R++ V+ E+P +F
Sbjct: 292 ERANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAF 351
Query: 360 LLHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDGFLLI 419
+ + IERKP+RFC AL + T TL+STY GF +I
Sbjct: 352 MKDILDRMCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVI 411
Query: 420 IEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVL 479
+EP + AV + +C DASIAI+P+ RF SVIITSGT+SPL+MYPK+L+F+ +
Sbjct: 412 VEPQDGSQLAV----ITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSV 467
Query: 480 QQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVV 539
S++MTLA+ P+++ +G+DQVA++SRFE R D +++RNYG++++E A + PDG+VV
Sbjct: 468 IASFTMTLARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVV 527
Query: 540 FFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILL 599
FF SYLYME++I +W I+DE+ KYKL+ +ET DA ET+ ALE Y +AC +GRGA+L
Sbjct: 528 FFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLF 587
Query: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAM 659
SVARGKVSEGIDF H GR V+M+GIP+ YTESR+L+ARLE+LR+ + I+ENDFL+FDAM
Sbjct: 588 SVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDFLTFDAM 647
Query: 660 RHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANT 717
RH AQC+GR LR K DYG+MV AD+RF+R K+ +LP+W+ + L A NLS D A
Sbjct: 648 RHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPACTNLSIDEAAQVA 707
Query: 718 KQFLRTMAQPTDPKDQEGVSVWSHAQLLAHQESVKKK 754
+++L MAQP + + Q GVS+ + + H + K+
Sbjct: 708 RRWLTLMAQPFEKEHQLGVSLLD--KEMVHDSQIMKR 742
>ECU06g0200 [KL] KOG1131 RNA polymerase II transcription initiation/nucleotide
excision repair factor TFIIH 5'-3' helicase subunit RAD3
Length = 742
Score = 646 bits (1666), Expect = 0.0
Identities = 341/751 (45%), Positives = 475/751 (62%), Gaps = 55/751 (7%)
Query: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
MK +ID++ V FPY +YPEQ +YM ++K++LD G+ ++EMPSGTGKTV+LLS+T++YQ
Sbjct: 1 MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 61 MHYPE---HRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLH 117
+H H K++YCSRT+ E+EKAL EL+ +++Y K +F GLGLT RKNLC++
Sbjct: 61 LHMKSKNVHFKVVYCSRTVPEVEKALKELDRVVEYIKKHRPI--EFLGLGLTGRKNLCIN 118
Query: 118 PRVSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFS 177
K VD CRR+ N A K CD++EN+ ++ +P V+
Sbjct: 119 KAALKSFN---VDVACRRLVNKLAESK-----------CDFYENLADFRE---VPVAVYD 161
Query: 178 FERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEA 237
F +L E+K +CPY+ VRR I +C+ IIY Y+YL+DP+I VS E+ +++VIFDEA
Sbjct: 162 FLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRICAIVSSELGPNSVVIFDEA 221
Query: 238 HNIDNVCIEXXXXXXXXXXXXXXXXGANALDRKVEEMKKVDSQKLQDEY--EKLVHGLRA 295
HNID+ CIE L+ ++ K +Q E EKLV +
Sbjct: 222 HNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGKPASGVDIQYEKVREKLVGPVPE 281
Query: 296 SDIXXXXXXXXXXXXXXSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISET 355
S S + E +PGN+R + HF+S LKR E+ KT++K H+ +E+
Sbjct: 282 S----------IPYYYASGEGNYEFLPGNLRNSFHFVSALKRITEFFKTKLKTTHLTTES 331
Query: 356 PNSFLLHLKQLTFIERKPLRFCXXXXXXXXXXXXXXXXXXFNALKDIATFATLISTYEDG 415
SF +++L+F+E+K LRFC LK +A F+T++S Y G
Sbjct: 332 TESFCKSIRELSFVEKKALRFCSQRLGMLSQSLGLDDED-MGHLKTVADFSTMVSMYSKG 390
Query: 416 FLLIIEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNF 475
F++I EP++ + + V NP +R CLD+SIAI P+F RF +VIITSGT+SP+DMYPK+LNF
Sbjct: 391 FVVIFEPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTMSPIDMYPKILNF 450
Query: 476 ETVLQQSYSMTLAKKSFLPMILTKGSDQVAI------------------SSRFEIRNDPS 517
TL + S P+I+TKG+DQ+ + ++ F +R+DPS
Sbjct: 451 VPSRIAEIGATLDRNSISPLIITKGNDQMTLRALSDDMETTDACSGDVLTTSFSLRSDPS 510
Query: 518 IVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQ 577
+VRNYG ++VE +K+ PDG+V FFPSY+YME I+S+W I++E+ K KL+ VETPD +
Sbjct: 511 VVRNYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISKNKLVFVETPDGR 570
Query: 578 ETALALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKA 637
ET LAL Y++AC NGRG +L SVARGKVSEG+DF+ YGR V+M+G+PFQYTES LK
Sbjct: 571 ETELALANYKRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTESVRLKK 630
Query: 638 RLEFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPK 695
RL+FLRE Y I+E DFL+FDAMRHAAQCLGRVLR K+DYG+M+LAD RF R KKS+LPK
Sbjct: 631 RLDFLREEYGIKEYDFLTFDAMRHAAQCLGRVLRNKNDYGLMILADERFERNDKKSKLPK 690
Query: 696 WIAQGLSDADMNLSTDMAIANTKQFLRTMAQ 726
WI + + NLS DMA++ ++F R MAQ
Sbjct: 691 WIRNCIDGGNSNLSVDMALSIARRFFREMAQ 721
>Hs14042978 [L] KOG1132 Helicase of the DEAD superfamily
Length = 1249
Score = 155 bits (391), Expect = 3e-37
Identities = 146/624 (23%), Positives = 263/624 (41%), Gaps = 65/624 (10%)
Query: 108 LTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDV 167
L+SR + C+HP V N EKC + +G+ N + C ++ ++
Sbjct: 276 LSSRDHTCVHPEVVGNFNRN---EKCMELLDGK-----------NGKSCYFYHGVHKISD 321
Query: 168 ADYLPP-----GVFSFERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERV 222
L + E L+ ++ + CPY+T R +I +II Y+YLLD +I E +
Sbjct: 322 QHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESM 381
Query: 223 SKEVSKDAIVIFDEAHNIDNVCIEXXXXXXXXXXXXXXXXGANALDRKVEE-MKKVDSQK 281
+ K+ +VI DEAHNI++ E + LD V ++K D +
Sbjct: 382 DLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFAR---DELDSMVNNNIRKKDHEP 437
Query: 282 LQDEYEKLVHGLRAS-DIXXXXXXXXXXXXXXSNDILKEAIPGNIRRAT------HFISF 334
L+ L++ L A+ + N++L I AT HF +
Sbjct: 438 LRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAV 497
Query: 335 LKRFIE----YLKTRMKVLHVISETPNSFLLHLKQ-LTFIERKPLRFCXXXXXXXXXXXX 389
L++ + Y K + + VIS + L L L ++ R+ RF
Sbjct: 498 LQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKI------- 550
Query: 390 XXXXXXFNALKDIATFATLISTYE-DGFLLIIEPYEIENAAVPNPIVRFTCLDASIAIKP 448
A++ ++ I + +G L++ + + ++ F CL+ ++A
Sbjct: 551 --------AIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSD 602
Query: 449 IFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMILTKGSDQVAISS 508
I + ++++TSGT+SP+ + L +Q + + + G + +
Sbjct: 603 INGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCA 662
Query: 509 RFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKL 568
F+ G++L+ + G++ F PSY +E + W + G+ + K
Sbjct: 663 TFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 569 ILVETPDAQETAL--ALETYRKACS---NGRGAILLSVARGKVSEGIDFDHQYGRTVLMI 623
++VE ++T L+ Y A GA+L++V RGKVSEG+DF R V+ I
Sbjct: 723 VIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITI 782
Query: 624 GIPFQYTESRILKARLEFLRENYQIR----ENDFLSFDAMRHAAQCLGRVLRGKDDYGVM 679
GIPF + ++ + ++ + ++R + A R Q LGR +R ++D+G +
Sbjct: 783 GIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGAL 842
Query: 680 VLADRRF----ARKKSQLPKWIAQ 699
+L D RF +R S L KW+ Q
Sbjct: 843 ILVDDRFRNNPSRYISGLSKWVRQ 866
>7290625 [L] KOG1132 Helicase of the DEAD superfamily
Length = 985
Score = 149 bits (376), Expect = 2e-35
Identities = 90/298 (30%), Positives = 148/298 (49%), Gaps = 10/298 (3%)
Query: 434 IVRFTCLDASIAIKPIFE-RFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSF 492
I+ F C + ++ + + SVI+TSGT++PL L + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQV 512
Query: 493 LPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIIS 552
I+ G D+ + S + R++P + + G ++ A+I PDGL+VFFPSY + +
Sbjct: 513 YVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVD 572
Query: 553 MWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKVSEGIDF 612
WQ G+ ++ K I +E + +E + +A + +GA+ ++V RGKVSEG+DF
Sbjct: 573 AWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDF 632
Query: 613 DHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLS------FDAMRHAAQCL 666
+ GR V++ G+PF + + + +L N + REN LS DA R Q +
Sbjct: 633 ADRNGRAVIITGLPFPPLKDPKVILKRRYLEAN-RTRENQLLSGQEWYNLDATRAVNQAI 691
Query: 667 GRVLRGKDDYGVMVLADRRF--ARKKSQLPKWIAQGLSDADMNLSTDMAIANTKQFLR 722
GRV+R ++DYG ++L D RF A + QL KWI L D + +QF +
Sbjct: 692 GRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCSPFGPIVRELRQFFK 749
Score = 106 bits (265), Expect = 1e-22
Identities = 80/283 (28%), Positives = 124/283 (43%), Gaps = 66/283 (23%)
Query: 5 IDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAY-QMHY 63
I +PV FP+ YP Q YM + L G N +LE P+GTGKT+SLL ++A+ +
Sbjct: 6 IAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQ 64
Query: 64 PEHRK---------------------------------------IIYCSRTMSEIEKALV 84
EH+K +IY SRT S++ +A+
Sbjct: 65 SEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMR 124
Query: 85 ELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQARKK 144
EL+ + R + L SR LC+HP V +E+ + C+ + +
Sbjct: 125 ELKRTA---------YANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKT--- 172
Query: 145 KEENPDANVELCDYHENMYNY-DVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMISMC 203
C + + + D D P + E L++ + ++CPYF R ++
Sbjct: 173 -----------CSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQA 221
Query: 204 NIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNIDNVCIE 246
+I Y+YLLDPK A + +K + IVI DEAHNI+ +C E
Sbjct: 222 DITFMPYNYLLDPK-ARKANKIELGNTIVILDEAHNIEKICEE 263
>CE15894 [L] KOG1132 Helicase of the DEAD superfamily
Length = 994
Score = 138 bits (348), Expect = 3e-32
Identities = 96/308 (31%), Positives = 161/308 (52%), Gaps = 27/308 (8%)
Query: 435 VRFTCLDASIAIKPIFER-FSSVIITSGTISPLDM--YPKMLNFETVLQQSYSMTLAKKS 491
+++ C ASI+++ + R +V++ SGT+SP+ Y LNF +L+ ++ L +
Sbjct: 465 IKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHA--LKQVP 522
Query: 492 FLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESII 551
L I+T+G + ++ F+ R + V L+ ++ P G+++FF SY M+ ++
Sbjct: 523 VLTSIVTRGK-RGGLAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELV 581
Query: 552 SMWQTM--------GILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVAR 603
+ W+T +++ K K ++VE +E A Y + S GA LL+V R
Sbjct: 582 ATWKTTKWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRYTQGVSEQHGAALLAVCR 641
Query: 604 GKVSEGIDFDHQYGRTVLMIGIPFQ--YTESRILKAR----LEFLRENYQIREN--DFLS 655
GKVSEGIDF R V++IGIP+ + E +LK L ++ R++ D+
Sbjct: 642 GKVSEGIDFCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWYQ 701
Query: 656 FDAMRHAAQCLGRVLRGKDDYGVMVLADRRFARKKSQL-PKWIAQGLSDADMNLSTDMAI 714
+A R Q +GRVLR KDD+G +VL D R+A K ++ PKW+ +S +D TD
Sbjct: 702 MEAFRAVNQAIGRVLRHKDDFGTVVLMDTRYASAKPEMFPKWLRNTISRSD----TDGCA 757
Query: 715 ANTKQFLR 722
T +F +
Sbjct: 758 LKTSRFFK 765
Score = 92.8 bits (229), Expect = 2e-18
Identities = 75/269 (27%), Positives = 124/269 (45%), Gaps = 57/269 (21%)
Query: 8 LPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQMHYPEHR 67
L V FP+ Y Q +M ++ LD ++ LE P+GTGKT+SLL T+A+ E +
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75
Query: 68 ----------------------------KIIYCSRTMSEIEKALVELESLMDYRSKELGF 99
I Y SRT S++E+ + EL + +Y+ +
Sbjct: 76 PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHEL-NRTEYKWVKTTI 134
Query: 100 VEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQA----RKKKEENPDANVEL 155
L SR++ C++ +V K ++ N CR + + +A K D E
Sbjct: 135 --------LGSREHFCINQKVKKIKESNRQAHVCRGLVSKRACHYYNKFDACTTDKMTEF 186
Query: 156 CDYHENMYNYDVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLD 215
D E M D+ D++ G + +CPYF R+ +I+ Y+Y++D
Sbjct: 187 LDKGEAM---DIEDFVKLGT-----------QNSLCPYFMSRQRSETAELILLPYNYIID 232
Query: 216 PKIAERVSKEVSKDAIVIFDEAHNIDNVC 244
PK+ R ++ K++IVIFDEAHN++++C
Sbjct: 233 PKMRRRYKLDL-KNSIVIFDEAHNLESIC 260
>SPAC3G6.11 [L] KOG1133 Helicase of the DEAD superfamily
Length = 844
Score = 137 bits (346), Expect = 5e-32
Identities = 77/283 (27%), Positives = 152/283 (53%), Gaps = 13/283 (4%)
Query: 432 NPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFET---VLQQSYSMTLA 488
NP +++ LD S ++ + E+ SV + GT+SP+D + +L + +L S +
Sbjct: 538 NPYLKYLLLDPSKHVEILTEQCRSVNLAGGTMSPIDDFITLLFSDEQSRILPFSCDHIVP 597
Query: 489 KKSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYME 548
++ +++++G V + ++D +++++ G F I PDG+VVFFPS+ +++
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQ 657
Query: 549 SIISMWQTMGILDEVWKYKLILVETPDAQETAL-ALETYRKACSNGRGAILLSVARGKVS 607
+ +W+ GI + + K + +E+ D + L E Y+++ G +L SV G++S
Sbjct: 658 QAVKVWEMNGITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLS 717
Query: 608 EGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRE-------NYQIRENDFLSFDAMR 660
EGI+F + GR V+++G+PF ++ +A++ ++ E N + +F MR
Sbjct: 718 EGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEKGINAKQASQEFYENTCMR 777
Query: 661 HAAQCLGRVLRGKDDYGVMVLADRRFARKKSQ--LPKWIAQGL 701
Q +GR +R +DDY ++L D R+ R Q LP W+++ +
Sbjct: 778 AVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRKLPNWLSKNI 820
Score = 73.9 bits (180), Expect = 9e-13
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 64 PEHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKE 123
P +KI + SRT S++++ + E++ L + F R + L SRKNLC++ V K
Sbjct: 209 PIVQKIYFTSRTHSQLQQLVQEIKKLNNQT-----FSTPIRVVSLASRKNLCINNEVRKL 263
Query: 124 RKGNVVDEKCRRMTNGQARKKKEENPDANVELCDY-HENMYNYDVADYLPPGVFSFERLI 182
R + ++EKC + G A K C + +N +D D + E L+
Sbjct: 264 RPTSALNEKCIEL-QGSAHK------------CPFLQDNTQLWDFRDEALAEIMDIEELV 310
Query: 183 RFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN-ID 241
+ ++CPY+ R + I+ Y LL + A KD I I DEAHN ID
Sbjct: 311 ELGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQ-ESARNALNLTLKDNICIIDEAHNLID 369
Query: 242 NVC 244
+C
Sbjct: 370 AIC 372
>At1g79950 [L] KOG1132 Helicase of the DEAD superfamily
Length = 983
Score = 131 bits (329), Expect = 5e-30
Identities = 77/281 (27%), Positives = 144/281 (50%), Gaps = 22/281 (7%)
Query: 439 CLDASIAIKPIFER-FSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMIL 497
C I + I ++ S+I+TSGT+SP+D + L + ++ ++ ++
Sbjct: 410 CFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVV 469
Query: 498 TKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQ-- 555
+ G ++S + R+ P + G+ +V F+++ P+GL++FFPSY M+S I+ W+
Sbjct: 470 STGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNG 529
Query: 556 ----TMGILDEVWKYKLILVETPDAQETALALETYRKACSN--GRGAILLSVARGKVSEG 609
+M + + + K K ++E D+ A+ + + + G + +V RGKVSEG
Sbjct: 530 CYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEG 589
Query: 610 IDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRE-----------NDFLSFDA 658
+DF GR V++ G+P+ +K + EFL E Q+ + + + S +A
Sbjct: 590 LDFADGAGRAVVITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEA 649
Query: 659 MRHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQLPKWI 697
R Q +GRV+R + DYG ++ D RF + ++S++ WI
Sbjct: 650 ARAVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWI 690
>7290134 [L] KOG1133 Helicase of the DEAD superfamily
Length = 861
Score = 128 bits (321), Expect = 4e-29
Identities = 88/316 (27%), Positives = 155/316 (48%), Gaps = 27/316 (8%)
Query: 402 IATFATLISTYEDGFLLIIEPYEIENAAVPNPI---VRFTCLDASIAIKPIFERFSSVII 458
+A TL S EDG +L+ +P+ +++ LD + I +++I
Sbjct: 541 LAFLETLTSNAEDGRILV------------DPVGGTLKYILLDPAEQFADIVAEARAIVI 588
Query: 459 TSGTISPLDMYPKMLN---FETVLQQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRND 515
GT+ P + L + ++++ Y+ +A + LP +++ G +S +F R
Sbjct: 589 AGGTMQPTKELKEQLFTGCHDRLVERFYNHVVANDAILPFVISNGPSGAPLSFKFAHRGS 648
Query: 516 PSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETPD 575
++R +L ++ P G+V F PSY Y++ + + G L+ + K + E
Sbjct: 649 AEMLRELSMILRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQSGTLETISGRKSVFREVSG 708
Query: 576 AQETAL---ALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTES 632
+ E L AL R A GA+LLSV GK+SEG++F GR VL++G+P+ + S
Sbjct: 709 SAEQLLDNYALAIKRPA---SYGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPYSNSLS 765
Query: 633 RILKARLEFLRENY-QIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFARKK- 690
L+ R++ L E N++ ++ QC+GR +R DY + L D+RFA K
Sbjct: 766 PELRQRMQHLDEKLGPGAGNEYYENLCVKAVNQCIGRAVRHIKDYACVYLLDKRFADPKI 825
Query: 691 -SQLPKWIAQGLSDAD 705
+LPKWI++ + +A+
Sbjct: 826 RGKLPKWISRHIVEAN 841
Score = 58.2 bits (139), Expect = 5e-08
Identities = 47/177 (26%), Positives = 75/177 (41%), Gaps = 14/177 (7%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
+I +CSRT S++ + + EL +S R + L SR+ LC +P V K +
Sbjct: 189 QIFFCSRTHSQLAQIVAELRKTPHGQS--------VRSISLGSRQQLCGNPAVRKLKHVG 240
Query: 128 VVDEKCRRMTNGQAR----KKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFERLIR 183
+++E+C M +AR KK +AN C + + D E L
Sbjct: 241 LMNERCLDMATKKARPNPSKKSRLTAEAN-SRCPFKAASLVESLRDLALTEPLDIEELAN 299
Query: 184 FCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
C Y+ R + +I+ Y LL ++ + K +IVI DEAHN+
Sbjct: 300 EGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEAHNL 355
>Hs13787197 [L] KOG1133 Helicase of the DEAD superfamily
Length = 906
Score = 125 bits (313), Expect = 3e-28
Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 29/338 (8%)
Query: 406 ATLISTYEDGFLLIIEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISP 465
A L + +DG +++ + + + +F L+ ++ + + +V+I GT+ P
Sbjct: 571 AALTTANQDGRVILSRQGSLSQSTL-----KFLLLNPAVHFAQVVKECRAVVIAGGTMQP 625
Query: 466 LDMYPKML------NFETVLQQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIV 519
+ + + L E V++ S + + LP+++ G + F+ R P ++
Sbjct: 626 VSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMM 685
Query: 520 RNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQET 579
G +L + P G+V FFPSY Y+ + + W+ G+L + K I E A +
Sbjct: 686 DEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQV 745
Query: 580 ALALETYRK---ACSNGR----GAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTES 632
L Y + AC R GA+LLSV GK+SEGI+F GR V+M+G+PF S
Sbjct: 746 EQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRS 805
Query: 633 RILKARLEFLRENYQIREND------FLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRF 686
L+ ++ +L + + M+ Q +GR +R + D+ +VL D+R+
Sbjct: 806 AELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRY 865
Query: 687 ARKK--SQLPKWIAQGLSDADMNLSTDMAIANTKQFLR 722
AR ++LP WI + ++ + AIA ++F R
Sbjct: 866 ARPPVLAKLPAWIR---ARVEVKATFGPAIAAVQKFHR 900
Score = 71.6 bits (174), Expect = 4e-12
Identities = 52/180 (28%), Positives = 85/180 (46%), Gaps = 16/180 (8%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
KI YCSRT S++ + + E+ K+ F +D R + L SR+NLC++ V
Sbjct: 228 KIYYCSRTHSQLAQFVHEV--------KKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQ 279
Query: 128 VVDEKCRRMTNGQARKKK---EENPDANVELCDYHENMYNYD----VADYLPPGVFSFER 180
+++++C M + KKK EE P + YN++ + D V E+
Sbjct: 280 LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQ 339
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
L+ +E R CPY+ R I +++ Y LL + + +D +VI DEAHN+
Sbjct: 340 LLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNL 398
>Hs22057889 [L] KOG1133 Helicase of the DEAD superfamily
Length = 960
Score = 117 bits (294), Expect = 5e-26
Identities = 81/302 (26%), Positives = 143/302 (46%), Gaps = 24/302 (7%)
Query: 406 ATLISTYEDGFLLIIEPYEIENAAVPNPIVRFTCLDASIAIKPIFERFSSVIITSGTISP 465
A L + +DG +++ + + + +F L+ ++ + + +V+I GT+ P
Sbjct: 571 AALTTANQDGRVILSRQGSLSQSTL-----KFLLLNPAVHFAQVVKECRAVVIAGGTMQP 625
Query: 466 LDMYPKML------NFETVLQQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRNDPSIV 519
+ + + L E V++ S + + LP+++ G + F+ R+ P ++
Sbjct: 626 VSNFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGVSNQPLEFTFQKRDLPQMM 685
Query: 520 RNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETPDAQET 579
G +L + G+V FFPSY Y+ + + W+ G+L + K I E A +
Sbjct: 686 DEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQV 745
Query: 580 ALALETYRK---ACSNGR----GAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTES 632
L Y + AC R GA+LLSV GK+SEGI+F GR V+M+G+PF S
Sbjct: 746 EQVLLAYSRCGQACGQERGPVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRS 805
Query: 633 RILKARLEFL-----RENYQIRENDFLSFD-AMRHAAQCLGRVLRGKDDYGVMVLADRRF 686
L+ ++ +L R Q L + M+ Q +GR +R + D+ +VL D+R+
Sbjct: 806 AELQEKMAYLDQTLPRAPGQAHPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRY 865
Query: 687 AR 688
AR
Sbjct: 866 AR 867
Score = 68.6 bits (166), Expect = 4e-11
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
KI +CSRT S++ + + E+ K+ F +D R + L SR+NLC++ V
Sbjct: 228 KIYHCSRTHSQLAQFVHEV--------KKSPFGKDVRLVSLGSRQNLCVNEDVRSLGSVQ 279
Query: 128 VVDEKCRRMTNGQARKKK---EENPDANVELCDYHENMYNYD----VADYLPPGVFSFER 180
+++ +C M + KKK EE P + YN++ + D V E+
Sbjct: 280 LINNRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQ 339
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
L+ +E R CPY+ R I +++ Y LL + + +D +VI DEAHN+
Sbjct: 340 LLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNL 398
>Hs7706541_1 [L] KOG1132 Helicase of the DEAD superfamily
Length = 755
Score = 117 bits (294), Expect = 5e-26
Identities = 73/255 (28%), Positives = 121/255 (46%), Gaps = 12/255 (4%)
Query: 455 SVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRN 514
S+I+TSGT++P+ + + + + K ++ +G D +SS F+ R
Sbjct: 474 SLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRF 533
Query: 515 DPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETP 574
+ + G L A++ P GL++FFPSY ME + W+ + ++ K + VE
Sbjct: 534 SEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR 593
Query: 575 DAQETALALETY--RKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTES 632
+ + Y R A GA L+V RGK SEG+DF GR V++ G+P+
Sbjct: 594 SKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMD 653
Query: 633 RILKARLEFLRE--------NYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADR 684
+ +++FL E + ++ A R Q +GRV+R + DYG + L D
Sbjct: 654 PRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDH 713
Query: 685 R--FARKKSQLPKWI 697
R FA ++QLP W+
Sbjct: 714 RFAFADARAQLPSWV 728
Score = 111 bits (277), Expect = 5e-24
Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 69/319 (21%)
Query: 2 KFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQM 61
K ++ + V FP+ Y Q +YM + + L N ILE P+GTGKT+ LL T+A++
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWRE 61
Query: 62 H----------------------------------------YPEHRKIIYCSRTMSEIEK 81
H Y + KIIY SRT S++ +
Sbjct: 62 HLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQ 121
Query: 82 ALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQA 141
+ EL + YR K L SR+ LC+HP V K+ ++ CR+ ++
Sbjct: 122 VINELRN-TSYRPKV---------CVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRS 171
Query: 142 RKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMIS 201
C ++ N+ + L + E L++ + R+CPY+ R +
Sbjct: 172 --------------CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQ 217
Query: 202 MCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNIDNVCIEXXXXXXXXXXXXXXX 261
+II Y+YLLD K + R K +VIFDEAHN++ +C E
Sbjct: 218 QADIIFMPYNYLLDAK-SRRAHNIDLKGTVVIFDEAHNVEKMCEE---SASFDLTPHDLA 273
Query: 262 XGANALDRKVEEMKKVDSQ 280
G + +D+ +EE K Q
Sbjct: 274 SGLDVIDQVLEEQTKAAQQ 292
>Hs14790174_1 [L] KOG1132 Helicase of the DEAD superfamily
Length = 766
Score = 117 bits (294), Expect = 5e-26
Identities = 73/255 (28%), Positives = 121/255 (46%), Gaps = 12/255 (4%)
Query: 455 SVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMILTKGSDQVAISSRFEIRN 514
S+I+TSGT++P+ + + + + K ++ +G D +SS F+ R
Sbjct: 474 SLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRF 533
Query: 515 DPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWKYKLILVETP 574
+ + G L A++ P GL++FFPSY ME + W+ + ++ K + VE
Sbjct: 534 SEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR 593
Query: 575 DAQETALALETY--RKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTES 632
+ + Y R A GA L+V RGK SEG+DF GR V++ G+P+
Sbjct: 594 SKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMD 653
Query: 633 RILKARLEFLRE--------NYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADR 684
+ +++FL E + ++ A R Q +GRV+R + DYG + L D
Sbjct: 654 PRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDH 713
Query: 685 R--FARKKSQLPKWI 697
R FA ++QLP W+
Sbjct: 714 RFAFADARAQLPSWV 728
Score = 111 bits (277), Expect = 5e-24
Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 69/319 (21%)
Query: 2 KFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQM 61
K ++ + V FP+ Y Q +YM + + L N ILE P+GTGKT+ LL T+A++
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWRE 61
Query: 62 H----------------------------------------YPEHRKIIYCSRTMSEIEK 81
H Y + KIIY SRT S++ +
Sbjct: 62 HLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQ 121
Query: 82 ALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCRRMTNGQA 141
+ EL + YR K L SR+ LC+HP V K+ ++ CR+ ++
Sbjct: 122 VINELRN-TSYRPKV---------CVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRS 171
Query: 142 RKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMIS 201
C ++ N+ + L + E L++ + R+CPY+ R +
Sbjct: 172 --------------CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQ 217
Query: 202 MCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNIDNVCIEXXXXXXXXXXXXXXX 261
+II Y+YLLD K + R K +VIFDEAHN++ +C E
Sbjct: 218 QADIIFMPYNYLLDAK-SRRAHNIDLKGTVVIFDEAHNVEKMCEE---SASFDLTPHDLA 273
Query: 262 XGANALDRKVEEMKKVDSQ 280
G + +D+ +EE K Q
Sbjct: 274 SGLDVIDQVLEEQTKAAQQ 292
>YPL008w [L] KOG1133 Helicase of the DEAD superfamily
Length = 861
Score = 105 bits (262), Expect = 3e-22
Identities = 79/306 (25%), Positives = 141/306 (45%), Gaps = 25/306 (8%)
Query: 432 NPIVRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKS 491
N +++ L+ S + I + V++ GT+ P+ + + N + TL+
Sbjct: 555 NYSIKYMLLEPSKPFESILNQAKCVVLAGGTMEPMSEF--LSNLLPEVPSEDITTLSCNH 612
Query: 492 FLPM--ILTKGSDQVAISSRFEIRNDPSIVRNY-GSMLVEFAKITPD--GLVVFFPSYLY 546
+P + T ++Q + FE R PS+V N+ V+ +K P G+V FFPSY Y
Sbjct: 613 VIPKENLQTYITNQPELEFTFEKRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFPSYQY 672
Query: 547 MESIISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKV 606
+ +I W+ + + I E D + L Y + + GRG++LL++ GK+
Sbjct: 673 LAHVIQCWKQNDRFATLNNVRKIFYEAKDGDDI---LSGYSDSVAEGRGSLLLAIVGGKL 729
Query: 607 SEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFL----------RENYQIRENDFLSF 656
SEGI+F R V+M+G+PF S L + + L E +F+
Sbjct: 730 SEGINFQDDLCRAVVMVGLPFPNIFSGELIVKRKHLAAKIMKSGGTEEEASRATKEFMEN 789
Query: 657 DAMRHAAQCLGRVLRGKDDYGVMVLADRRFARK--KSQLPKWIAQGLSDADMNLSTDMAI 714
M+ Q +GR +R +DY + L D R+ R + +L +W+ ++ +T I
Sbjct: 790 ICMKAVNQSVGRAIRHANDYANIYLLDVRYNRPNFRKKLSRWVQDSINSEH---TTHQVI 846
Query: 715 ANTKQF 720
++T++F
Sbjct: 847 SSTRKF 852
Score = 57.8 bits (138), Expect = 6e-08
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVED--FRGLGLTSRKNLCLHPRVSKERK 125
KI Y SRT S++ + +L L + S V D + L L S+K LC++P+V K +
Sbjct: 232 KIYYASRTYSQLGQFTSQLR-LPSFPSSFRDKVPDEKVKYLPLASKKQLCINPKVMKWKT 290
Query: 126 GNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYD-------VADYLPPGVFSF 178
+++ C + + + E C +++N + + D + +
Sbjct: 291 LEAINDACADLRHSK-------------EGCIFYQNTNEWRHCPDTLALRDMIFSEIQDI 337
Query: 179 ERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVS-KDAIVIFDEA 237
E L+ + +CPY+ R + + ++ Y YLL + R S +++ +++IVI DEA
Sbjct: 338 EDLVPLGKSLGICPYYASREALPIAEVVTLPYQYLLSE--STRSSLQINLENSIVIIDEA 395
Query: 238 HNI 240
HN+
Sbjct: 396 HNL 398
>At1g79890 [L] KOG1133 Helicase of the DEAD superfamily
Length = 882
Score = 104 bits (260), Expect = 5e-22
Identities = 74/313 (23%), Positives = 139/313 (43%), Gaps = 47/313 (15%)
Query: 435 VRFTCLDASIAIKPIFERFSSVIITSGTISPLD-----MYPKMLNFETVLQQSYSMTLAK 489
+++ L + + + +VI+ GT+ P++ ++P L + S S +
Sbjct: 539 IKYVMLTGAKLFSEVVDEAHAVILAGGTLQPIEETRERLFP-WLPSNQLQFFSCSHIVPP 597
Query: 490 KSFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMES 549
+S +P+ ++ G + R+ +++ G ++ + P+G++VFF S+ Y
Sbjct: 598 ESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQ 657
Query: 550 IISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKVSEG 609
+ + W GIL + K K + E E L Y++A + RGAI+L+V GKVSEG
Sbjct: 658 VHTAWSNSGILRRIVKKKRVFREPRKNTEVEAVLRDYKEAIESERGAIMLAVVGGKVSEG 717
Query: 610 IDFDHQYGRTVLMIGIPF------------QYTESRI----LKARLEFLRENY------- 646
I+F R V+M+G+P+ ++ E R +K + + ++Y
Sbjct: 718 INFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGRADSDSIKPSVTLVDDSYYSGDVQA 777
Query: 647 --------QIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFARKKS------- 691
+ R ++ M+ Q +GR +R + DY ++L D R++ S
Sbjct: 778 GFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIRHEKDYASILLVDARYSNDPSKRTSHSH 837
Query: 692 ---QLPKWIAQGL 701
+LPKWI L
Sbjct: 838 PSNKLPKWIKDRL 850
Score = 68.9 bits (167), Expect = 3e-11
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
K+ +CSRT S++ + + EL + F + + + L SRKNLC++ V K
Sbjct: 184 KVFFCSRTHSQLSQFVKELRKTV--------FAKKLKVVCLGSRKNLCINEDVLKLGNVT 235
Query: 128 VVDEKCRRMTNGQ-ARKKKEENPDANVEL--------CDY---HENMYNYDVADYLPPGV 175
++E+C + + ++ K++N ANV + C H+ + A+
Sbjct: 236 RINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFK-AESFQQEA 294
Query: 176 FSFERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFD 235
E L++ E R CPY+ RRM +++I Y LL E + + K+++VI D
Sbjct: 295 MDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIID 353
Query: 236 EAHNI 240
EAHN+
Sbjct: 354 EAHNL 358
>ECU02g1090 [L] KOG1132 Helicase of the DEAD superfamily
Length = 678
Score = 103 bits (258), Expect = 8e-22
Identities = 74/289 (25%), Positives = 131/289 (44%), Gaps = 13/289 (4%)
Query: 437 FTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMI 496
F LD + + SV++ SGT++P + L E + +K
Sbjct: 395 FWLLDGGYTFRSFVGKVRSVVLLSGTLTPFSSFSSELGHEFAHTIVAPHLITQKQVFVSC 454
Query: 497 LTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPD--GLVVFFPSYLYMESIISMW 554
+ KG + + + + P + ++V+ + D G +VF PSY ++E++
Sbjct: 455 VRKGHLLKELIGTYGVSDTPQYLDQLCRVIVDVSCKIKDHGGTLVFVPSYSFLENL---Q 511
Query: 555 QTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKVSEGIDFDH 614
+ MG V L+ ++ E + Y+ + + A+ + V RGK SEGIDF
Sbjct: 512 KRMG---GVSSGLLVEPKSGAGNEFEKVMRRYKNRIATKQSAVFMCVYRGKASEGIDFKD 568
Query: 615 QYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKD 674
+ R V+ +GIP+ ++ + EF + + A R Q LGR +R KD
Sbjct: 569 SFARAVIAVGIPYPSLHDPQVELKKEFNDKYKSFNGRLWYEAQAFRAVNQALGRAIRHKD 628
Query: 675 DYGVMVLADRRFARKK--SQLPKWIAQGLSDADMNLSTDMAIANTKQFL 721
D+G+++L D R++ K+ SQL KW+A+ + D S D ++ +FL
Sbjct: 629 DWGIVMLLDSRYSEKRVQSQLSKWVAENIKTYD---SYDGCVSELVRFL 674
>CE03493 [L] KOG1133 Helicase of the DEAD superfamily
Length = 848
Score = 99.8 bits (247), Expect = 1e-20
Identities = 66/269 (24%), Positives = 127/269 (46%), Gaps = 9/269 (3%)
Query: 436 RFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLN-----FETVLQQSYSMTLAKK 490
RF L+ + + + + I+ GT+ P + + L+ +++ + S +
Sbjct: 555 RFMLLNPADRLSEVVTSARATILVGGTMEPAQLLVETLSRGSIGADSIRRFSCCHVIDDS 614
Query: 491 SFLPMILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESI 550
L + + + D ++ R + +R+ + + P+G+V+F PSY ++ +
Sbjct: 615 QLLAVTVERTVDGKPFQLTYQTRGADTTLRSLATSIQALIPHIPNGVVIFVPSYDFLFNF 674
Query: 551 ISMWQTMGILDEVWKYKLILVETPDAQETALALETYRKACSNGRGAILLSVARGKVSEGI 610
+ GIL + + K + E+ Q T+ + + +A +GAIL +V GK+SEGI
Sbjct: 675 QKKMKEFGILKRIEEKKAVFTES--RQPTSDVWDRFSRAAKTSKGAILFAVVGGKMSEGI 732
Query: 611 DFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMRHAAQCLGRVL 670
+F + GR V++IG+P+ S L+ R++FL N M Q +GR +
Sbjct: 733 NFCDELGRAVIVIGLPYPNKTSVELRERMKFLDTQMPNGGNLLYESLCMHAVNQAIGRAI 792
Query: 671 RGKDDYGVMVLADRRFARK--KSQLPKWI 697
R + DY + L D R+A++ + +L WI
Sbjct: 793 RHRRDYAAVYLFDDRYAKESTRRKLSTWI 821
Score = 66.6 bits (161), Expect = 1e-10
Identities = 49/185 (26%), Positives = 84/185 (44%), Gaps = 21/185 (11%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
KI Y SRT S++E+ EL R + SR LC++ V K + +
Sbjct: 185 KIFYASRTHSQLEQLAEELAKTRFQP----------RIVTCASRGTLCVNEEVKKLKLNH 234
Query: 128 VVDEKCRRMT-NGQARKKK----EENPDANVELCDYHENMYNYDVADYLPPGVFS--FER 180
+++EKC + NG + K+K E+ + C YN + + GV S +
Sbjct: 235 LINEKCMELRKNGMSEKEKVQKLEKGTTKKTKTCATSCEFYNSTQIEDVVNGVLSNKLKS 294
Query: 181 LIRFCEEKRM---CPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEA 237
+ ++ ++ CPYF R+ + C +++ Y LL + E+ KD +++ DEA
Sbjct: 295 TLEVSKQGKLSNGCPYFATRKSVPQCQLVLLPYQVLLHDGTRKAWGIEL-KDNVIVLDEA 353
Query: 238 HNIDN 242
HN+ N
Sbjct: 354 HNVLN 358
>CE17764 [L] KOG1132 Helicase of the DEAD superfamily
Length = 983
Score = 97.4 bits (241), Expect = 7e-20
Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 13/268 (4%)
Query: 439 CLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPMILT 498
C+ +++ F S+++ SGT+ P+D L E Q + K + +L
Sbjct: 666 CMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIFAAVLP 725
Query: 499 KGSDQVAISSRFEIRNDP--SIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQT 556
G I + +DP S G+++ P G++ F PSY ++ +
Sbjct: 726 IGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLKQCMIR 785
Query: 557 MGILDEVWKYKLILVETPDAQETALALETYRKAC-------SNGRGAILLSVARGKVSEG 609
+ ++ K++L E + E ++ + A +N G+++ +V RGKVSEG
Sbjct: 786 NSTMRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRGKVSEG 845
Query: 610 IDFDHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQ----IRENDFLSFDAMRHAAQC 665
IDF R V+ +GIP+ + A+ + +N + + +++ + A R Q
Sbjct: 846 IDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYRALNQA 905
Query: 666 LGRVLRGKDDYGVMVLADRRFARKKSQL 693
LGR LR K+D+G M++ D R R+ L
Sbjct: 906 LGRCLRHKNDWGAMLMIDERLERQTGNL 933
Score = 53.1 bits (126), Expect = 2e-06
Identities = 46/187 (24%), Positives = 87/187 (45%), Gaps = 29/187 (15%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
+I Y +RT +I + + E L + + + L SR+ C++P RK
Sbjct: 239 RIYYGTRTHKQIAQVVKEFS--------RLPYAKILKHTILASREQSCINPAA---RKHA 287
Query: 128 VVDEKCRRMTNGQA-----RKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFERLI 182
+ + C+ + + + + + + + L D+ E N V VF E+++
Sbjct: 288 DISQYCKEVNSAHSIGCSFKSAMKPRFEKALPLRDHLER--NGTV-------VFDMEKIV 338
Query: 183 RFC--EEKRMCPYFTVRRMISM-CNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
++CPYF+ R+++ +II + YL+DP I ++ +++IVI DEAHN
Sbjct: 339 ETLAISYPQLCPYFSTNRILTQDADIIFCPFSYLVDPLIRNSSDVQI-RNSIVILDEAHN 397
Query: 240 IDNVCIE 246
I++ C E
Sbjct: 398 IEDTCRE 404
>ECU08g1120 [L] KOG1133 Helicase of the DEAD superfamily
Length = 619
Score = 94.4 bits (233), Expect = 6e-19
Identities = 78/273 (28%), Positives = 128/273 (46%), Gaps = 27/273 (9%)
Query: 435 VRFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLP 494
VRFT LDAS+ + + E ++++ GT+ P+D +L ++ SY FL
Sbjct: 354 VRFTPLDASMYFEDVLE-CRALLLAGGTMEPVDQLMSVLGKKSPRYFSYGSVC--NDFLA 410
Query: 495 MILTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDG-LVVFFPSYLYMESIISM 553
+++ G I FE R P +++ S + + DG +V F PS Y+
Sbjct: 411 LVVGSGPSGREIIVNFETRERPESIKDVTSSISNLSNAVKDGGMVCFLPSKAYL------ 464
Query: 554 WQTMGILDEVWKYKLILVETPDA-QETALALETYRKACSNGRGAILLSVARGKVSEGIDF 612
GIL E +V T A E + E Y + G IL +V G++SEG++F
Sbjct: 465 ----GILRERCGD---MVGTKKALYEDLITFEGYAEEAGRGP-CILFAVMGGRLSEGVNF 516
Query: 613 DHQYGRTVLMIGIPFQYTESRILKARLEFLRENYQIRENDFLSFDAMRHAAQCLGRVLRG 672
R ++++G+P+ T+ LK R +F ++ + AMR Q LGR LR
Sbjct: 517 GDGLCRLLVVVGVPYP-TQDLELKERAKF-------NGGEYATSIAMRTVNQTLGRALRH 568
Query: 673 KDDYGVMVLADRRFARKKSQLPKWIAQGLSDAD 705
++DY V+VL D+R+ + + WI + + D
Sbjct: 569 RNDYAVLVLLDKRYIQLSRLVSPWIREKVVHCD 601
Score = 87.8 bits (216), Expect = 6e-17
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 47/242 (19%)
Query: 16 KIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAY---------------- 59
++Y Q + D ++ +D G I P+GTGKT+SLLS + Y
Sbjct: 5 ELYDVQKLLIRDARRVIDEGTAGIFSSPTGTGKTMSLLSAVIDYIGADEAGLDPRNRALE 64
Query: 60 -QMHYPEHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHP 118
+ K++YC+RT +++ +A+ EL+ L E G + L SR+ CL+
Sbjct: 65 QALFQGGRMKVLYCTRTHTQLTQAINELKKL------EAGC----NSVVLGSRRIYCLNE 114
Query: 119 RVSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSF 178
RV + R + V+E C+ KE LC +++ +D GV
Sbjct: 115 RVCQNRSSDAVNEGCKEAV-------KEG-------LCVFYDGCDLFD-----GHGVLDV 155
Query: 179 ERLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAH 238
E L+ +R+CPY+ +R C+I+ Y L + + + +V +++IV+ DEAH
Sbjct: 156 EDLVAMGRNERLCPYYVSKRYSQQCDIVFLPYQLLFAREGRKSMDIDV-RESIVVVDEAH 214
Query: 239 NI 240
NI
Sbjct: 215 NI 216
>At1g20750 [L] KOG1132 Helicase of the DEAD superfamily
Length = 1055
Score = 76.6 bits (187), Expect = 1e-13
Identities = 81/327 (24%), Positives = 132/327 (39%), Gaps = 86/327 (26%)
Query: 3 FYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAG-----GNSILEMPSGTGKTVSLLSLTV 57
+ I L V FPY Y Q +M + TLD +++LE P+GTGK++SLL +
Sbjct: 27 YQIGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHSHALLESPTGTGKSLSLLCSVL 85
Query: 58 AYQMHY-----------------------------PEHRKIIYCSRTMSEIEKALVELES 88
A+Q Y P+ I Y SRT ++I + + E
Sbjct: 86 AWQKSYKSRFPNGNLSHSKTQPSDIAGSSNVEPHEPQIPTIYYASRTHAQITQVIREY-- 143
Query: 89 LMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGNVVDEKCR--RMTNGQARKKKE 146
++ G+ LG SRK C + V + VDEKC R+ + ++
Sbjct: 144 ------RKTGYRVPMTVLG--SRKRYCTNSHVQGKEN---VDEKCGVGRILAYPSLQQTG 192
Query: 147 ENPDANVELCDYHENMYNYDVADYLPPGVFSFERLIRFCEEKRMCPYFTVRRMISMCNII 206
N GV E L++ + CPYF +M+ + ++
Sbjct: 193 HN-------------------------GVHDIEDLVKIGKTVTGCPYFASWKMLEVAQLV 227
Query: 207 IYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNIDNVCIEXXXXXXXXXXXXXXXXGANA 266
Y Y++DP I V+ + AI+IFDEAHN++++ E
Sbjct: 228 FCPYSYIIDPVIRGGVNLQ---GAIIIFDEAHNMEDIAREAGSINLEEDIIF-------K 277
Query: 267 LDRKVEEMKKVDSQKLQDEYEKLVHGL 293
L ++E+M +V+ + + D ++V GL
Sbjct: 278 LKNELEQMSEVEPE-IYDSLYEVVEGL 303
>Hs13787200 [L] KOG1133 Helicase of the DEAD superfamily
Length = 856
Score = 71.6 bits (174), Expect = 4e-12
Identities = 52/180 (28%), Positives = 85/180 (46%), Gaps = 16/180 (8%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
KI YCSRT S++ + + E+ K+ F +D R + L SR+NLC++ V
Sbjct: 228 KIYYCSRTHSQLAQFVHEV--------KKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQ 279
Query: 128 VVDEKCRRMTNGQARKKK---EENPDANVELCDYHENMYNYD----VADYLPPGVFSFER 180
+++++C M + KKK EE P + YN++ + D V E+
Sbjct: 280 LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQ 339
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
L+ +E R CPY+ R I +++ Y LL + + +D +VI DEAHN+
Sbjct: 340 LLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNL 398
Score = 70.1 bits (170), Expect = 1e-11
Identities = 52/171 (30%), Positives = 84/171 (48%), Gaps = 18/171 (10%)
Query: 567 KLILVETPDAQETALALETYRK---ACSNGRG----AILLSVARGKVSEGIDFDHQYGRT 619
++I E A + L Y + AC RG A+LLSV GK+SEGI+F GR
Sbjct: 683 QMIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRC 742
Query: 620 VLMIGIPFQYTESRILKARLEFLRENYQIREND------FLSFDAMRHAAQCLGRVLRGK 673
V+M+G+PF S L+ ++ +L + + M+ Q +GR +R +
Sbjct: 743 VVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQ 802
Query: 674 DDYGVMVLADRRFARKK--SQLPKWIAQGLSDADMNLSTDMAIANTKQFLR 722
D+ +VL D+R+AR ++LP WI + ++ + AIA ++F R
Sbjct: 803 KDFASVVLLDQRYARPPVLAKLPAWIR---ARVEVKATFGPAIAAVQKFHR 850
>Hs14765656 [L] KOG1133 Helicase of the DEAD superfamily
Length = 683
Score = 69.7 bits (169), Expect = 2e-11
Identities = 51/180 (28%), Positives = 85/180 (46%), Gaps = 16/180 (8%)
Query: 68 KIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLHPRVSKERKGN 127
KI +CSRT S++ + + E+ K+ F +D R + L SR+NLC++ V
Sbjct: 228 KIYHCSRTHSQLAQFVHEV--------KKSPFGKDVRLVSLGSRQNLCVNEDVRSLGSVQ 279
Query: 128 VVDEKCRRMTNGQARKKK---EENPDANVELCDYHENMYNYD----VADYLPPGVFSFER 180
+++++C M + KKK EE P + YN++ + D V E+
Sbjct: 280 LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDMEQ 339
Query: 181 LIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHNI 240
L+ +E R CPY+ R I +++ Y LL + + +D +VI DEAHN+
Sbjct: 340 LLALGKEARACPYYRSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNL 398
>At1g20720 [L] KOG1132 Helicase of the DEAD superfamily
Length = 986
Score = 65.5 bits (158), Expect = 3e-10
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 30/212 (14%)
Query: 439 CLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLN--FETVLQQSYSMTLAKKSFLPMI 496
C++ ++ K + + SVI+TSGT+SP++ + L F T L+ + + + + I
Sbjct: 432 CMNPAVVFKDLADISLSVILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAI 491
Query: 497 LTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQT 556
+ G +++ ++ + S G L E I P G +VFFPSY ME + W+
Sbjct: 492 -SNGPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRE 550
Query: 557 MGILDEVWKYKLILVETPDA--QETALALETY--------------RKACSNG------- 593
+ K + VE E L+ Y R+A G
Sbjct: 551 TEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSIRGKNKIIGRNRRAKKAGPIKTETQ 610
Query: 594 ----RGAILLSVARGKVSEGIDFDHQYGRTVL 621
+GA L+V RGKVSEGIDF R V+
Sbjct: 611 DDSKKGAAFLAVCRGKVSEGIDFADDNARAVV 642
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,890,712
Number of Sequences: 60738
Number of extensions: 1723381
Number of successful extensions: 4675
Number of sequences better than 1.0e-05: 27
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4493
Number of HSP's gapped (non-prelim): 68
length of query: 778
length of database: 30,389,216
effective HSP length: 114
effective length of query: 664
effective length of database: 23,465,084
effective search space: 15580815776
effective search space used: 15580815776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)