ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4478 check: MH A KOG0951 RNA processing and modification RNA helicase BRR2, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4478 1586201 1579755 -2149
(2149 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1975 0.0
SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1518 0.0
Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1403 0.0
At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1345 0.0
At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1325 0.0
CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1286 0.0
Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 979 0.0
At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 977 0.0
7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 916 0.0
YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 911 0.0
SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box sup... 900 0.0
CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 878 0.0
ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 336 2e-91
ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 314 1e-84
CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 292 5e-78
7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 291 1e-77
YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 241 7e-63
Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 205 7e-52
At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 200 2e-50
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 144 2e-33
Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 130 3e-29
CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 127 2e-28
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 122 6e-27
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 119 4e-26
7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 113 4e-24
At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 112 8e-24
7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 111 1e-23
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 106 5e-22
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 103 2e-21
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 103 3e-21
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 102 9e-21
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 101 1e-20
CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 101 1e-20
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 99 1e-19
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 98 2e-19
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 92 9e-18
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 83 6e-15
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 73 6e-12
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 72 7e-12
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 72 1e-11
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 71 2e-11
ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily 69 8e-11
At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 64 3e-09
CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily 62 1e-08
Hs6005872_2 [UO] KOG4434 Molecular chaperone SEC63 endoplasmic r... 61 2e-08
SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily 59 7e-08
Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily 55 9e-07
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 1975 bits (5117), Expect = 0.0
Identities = 1036/2186 (47%), Positives = 1439/2186 (65%), Gaps = 62/2186 (2%)
Query: 1 MTE-DAKERKQKIKEIYRYDEMSNQVLRADRSLIENRTDVHRDAEISQPKSMSGRIRLTE 59
MTE + K++ +KI+EIYRYDEMSN+VL+ D+ + + RDAEISQPKSMSGRI +
Sbjct: 1 MTEHETKDKAKKIREIYRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKD 60
Query: 60 MGSAVKEN---GLEDNERATAEKEFEKRMKSSSPQQTNSSRLDRTTVLDDITS--LNYIP 114
MG + N GL++N+ A EK KS+S ++ T+L+ + L+Y P
Sbjct: 61 MGQGLCNNINKGLKENDVAV-----EKTGKSASLKKIQQ----HNTILNSSSDFRLHYYP 111
Query: 115 TDDRNTEIYDEITTWCSEILGDDIPHSIIVDATDLIIVTLKQDESVD---LESKKKTIEV 171
D N E Y++I W +E+LG+DIPH +I+ D+ I LK++E + +E +K+ I+
Sbjct: 112 KDPSNVETYEQILQWVTEVLGNDIPHDLIIGTADIFIRQLKENEENEDGNIEERKEKIQH 171
Query: 172 ALDTELDNASFNSLVKLVKSISDYYAESADTGRTVNVAIXXXXXXXXXXXXXXXXXXXXX 231
L +D+ FN LVKL+K+I+DY ++ + VAI
Sbjct: 172 ELGINIDSLKFNELVKLMKNITDYETHPDNSNKQA-VAILADDEKSDEEEVTEMSNNANV 230
Query: 232 XXXXXXXXXXXXXXY-------NEKTDNSNDNFSVRSDIMNNSESLQIQSAAVMEEIIDI 284
Y N K N ++ +DI+ S+S E + I
Sbjct: 231 LGGEINDNEDDDEEYDYNDVEVNSKKKNKRALPNIENDIIKLSDSKTSNI-----ESVPI 285
Query: 285 KDIDGFYLQRKIRKQLKNIEETKVQEMANNVYDLLANDISEEE-----LTQNLHDIFGPD 339
ID F+LQRK+R +L + + +Q+++ + NDI E L Q L D+ +
Sbjct: 286 YSIDEFFLQRKLRSELGYKDTSVIQDLSEKIL----NDIETLEHNPVALEQKLVDLLKFE 341
Query: 340 AKQLIRLIVSNRETLYWGHNLQRSANENIDEILGEMAQRNLSHLVEAYKAKPDS-AKRKL 398
L I+ NR T++WG L +S I ++ +M + L+ LVE YK + + +KR+L
Sbjct: 342 NISLAEFILKNRSTIFWGIRLAKSTENEIPNLIEKMVAKGLNDLVEQYKFRETTHSKREL 401
Query: 399 NS---EPEVG-TKKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYE 454
+S +P+ K+ K P VI L+ +K +++K ++ K+SLPE SFKRVK Y+
Sbjct: 402 DSGDDQPQSSEAKRTKFSNPAIPPVIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQYD 461
Query: 455 EIHVPPPKKVDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCA 514
EIH+P P K ++ L +I SLP W + AFP+SETTSLN IQS+V+ AF D+N+L+CA
Sbjct: 462 EIHIPAPSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICA 521
Query: 515 PTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHF 574
PTG+GKTN+A+LTVL+A+SH+Y + +L FK+VYIAPLKALVQEQVREFQRRL
Sbjct: 522 PTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFL 581
Query: 575 GVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHD 634
G+KVAELTGDS LS++QI+ETQ+LV+TPEKWD+ TR S + + +LVRL+IIDE+HLLHD
Sbjct: 582 GIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHD 641
Query: 635 ERGPVIESIVARVLRDTT--AEIPTRLVALSATLPNYIDVAKFLHVPDNGLFYFDSTFRP 692
+RGPV+ESIVAR + E P R++ LSATLPNY DV +FL VP GLFYFDS+FRP
Sbjct: 642 DRGPVLESIVARTFWASKYGQEYP-RIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRP 700
Query: 693 CPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQK 752
CPL+QQ+CGI E+N+LKK AMN ACY+K+LE+ EG+Q+I+FVHSRK+T+RTA WL K
Sbjct: 701 CPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNK 760
Query: 753 LINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLF 812
E+ D GS +ILKTE++N D SL LI G G HHAGLT+ DRSLSEDLF
Sbjct: 761 FAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLF 820
Query: 813 ADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRY 872
ADGLL+VLV TATLAWGVNLPAHTVIIKGT++YSPEK W L PQD+LQMLGRAGRPRY
Sbjct: 821 ADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRY 880
Query: 873 DVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLG 932
D GEGIIIT+QS+V+YYL+VLNQQLPIESQ +SK+VDNLNAE+V GN+ ++AVNWL
Sbjct: 881 DTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLA 940
Query: 933 YSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQ 992
Y+YL VRM SP LY + S SD +L + ++VH+AL +L+ LV YD+ + ++
Sbjct: 941 YTYLYVRMLASPMLYKVPDIS---SDGQLKKFRESLVHSALCILKEQELVLYDAENDVIE 997
Query: 993 PTELGRXXXXXXXXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNITVRQEEKTELEKL 1052
T+LG YNREL ++T ID+ RIF+MSEEFK ++VR EEK EL++L
Sbjct: 998 ATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQL 1057
Query: 1053 VERCPIPIKEKATDSLAKANILLQVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCL 1112
+E+ PIPI+E D LAK N+LLQ Y S+L+ EGFALN+D+++I Q+AGRL RA+FE+CL
Sbjct: 1058 LEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICL 1117
Query: 1113 RKGWPRLTKLLLTICKCVDSRMWPTNSPFRQFKRCPQEIIRRAEASGLPWNDFLLLKNAH 1172
++GW T++LL +CK ++MWPTN P RQFK CP E+I+R EAS +PW D+L L+
Sbjct: 1118 KRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPA 1177
Query: 1173 EVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWDLDSSSYSE 1232
EVG A+RS K GK +DLL+RFPK+ + C QP+T S++RF +E+ WIWD++ E
Sbjct: 1178 EVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLE 1237
Query: 1233 TFLVLVEDTDGEQTIYHETLHVGRNAINSIVYLDFVVFLK---QKMLPPNYFVSVISEKW 1289
FL+++EDTDG+ +Y++ L + + + L F LK Q LPPN+F+++ISE W
Sbjct: 1238 PFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENW 1297
Query: 1290 LNCEYKIPVILSEIKLPKPFPPAISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFD 1349
+ E++IPV + KLPK FPP + ++I ST EL D+F ++ F +FNK+Q++VF+
Sbjct: 1298 WHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFEFKTFNKIQSQVFE 1357
Query: 1350 TLYHETENALICATKGSGKTIMAELSLLNHWREGRGRAIYICPFKTKITELLKNWKKRFS 1409
+LY+ ++ + + KG+GKT MAEL+LLNHWR+ +GRA+YI P KI LL +W KRFS
Sbjct: 1358 SLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSGEKIDFLLSDWNKRFS 1417
Query: 1410 HLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIH 1469
HLAGGK+IN + + K LA+SH++LATP +FE LSRRW +RKNIQ +EL+I DD H
Sbjct: 1418 HLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAH 1477
Query: 1470 EIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTA 1529
EI + G +YE +I+RMIFIATQLEK IR V L LANA+DFGEW G KS+I+NF+
Sbjct: 1478 EISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSP 1537
Query: 1530 LERQTPLTVDIETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATE 1589
ER PL ++I++ V+ + N L E+S A + +VF+ R +C+ A+
Sbjct: 1538 SERIEPLEINIQSFKDVEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASA 1597
Query: 1590 LVGLAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHE 1649
+ + A D+L EE + Y+ K+ D +L+ L+ G+GILY+GM +D +V++L+E
Sbjct: 1598 FMKFSKAIEWDMLNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYE 1657
Query: 1650 YKVISILVASRDCCFDAPSSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQ 1709
Y +S+L+ S+DC A + V + T ++G E++Y+ Y +N +LEM+G A + ++
Sbjct: 1658 YGAVSVLLISKDCSAFACKTDEVIILGTNLYDGAEHKYMPYTINELLEMVGLA-SGNDSM 1716
Query: 1710 QAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYT 1769
++T+ K YYKKFL + LPTES L Y + D L E AN +++KQDC+D TY+
Sbjct: 1717 AGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYS 1776
Query: 1770 YLYRRIHANPSFYGIQDVTADEISSYLTELVEEAVTTMKETELISVE-------GEANDS 1822
Y YRRIH NPS+YG++D + IS +L+ LVE + + E+ I ++ E N
Sbjct: 1777 YFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGG 1836
Query: 1823 TEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRL 1882
+ A E+IS + LI++ + VS TI +F + S + + F+++PLR
Sbjct: 1837 DDEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRK 1896
Query: 1883 HDIKPLRKLYDISPLKLSSEFDPRSTTAKVFVLLQAHFSGLHLPMDLSLDLSEILSKAPS 1942
D L KL PL+ S + KVF+LLQA+FS L LP+D DL +IL K
Sbjct: 1897 GDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVP 1956
Query: 1943 LAGTMVDILSMNGYLNATTAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNHNVETV 2002
L +VDILS NGYLNATTAMDL+QM++QGVWD D+PL+QIP F+ ILEKCK NVETV
Sbjct: 1957 LINVVVDILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETV 2016
Query: 2003 YDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTVS 2062
YD+MALEDEER++I+TL +++L +VA FVN+YPN+EL Y+L+ S + K+ +T+ ++
Sbjct: 2017 YDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLT 2076
Query: 2063 RDEEPETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYAIRKIALTKMTQDYELEIELEDPG 2122
RD EPE L V+S+ P +K E+WW+ +GE S ++LYAI+K+ L K TQ YELE + G
Sbjct: 2077 RDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSG 2136
Query: 2123 DHELTIWCVCDSYLDADKEVTFNVNI 2148
H LTIWCVCDSYLDADKE++F +N+
Sbjct: 2137 KHNLTIWCVCDSYLDADKELSFEINV 2162
>SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2176
Score = 1518 bits (3929), Expect = 0.0
Identities = 864/2191 (39%), Positives = 1296/2191 (58%), Gaps = 90/2191 (4%)
Query: 4 DAKERKQKIKEIYRYDEMSNQVLRADRSLIENRTDVHRDAE-ISQPKSMSGRIRLTEMGS 62
++KE+ + Y Y MSN V +ADR + R DAE +P+S+ R+ + +MGS
Sbjct: 18 NSKEKPNYGQSQYSYSAMSNLVTQADRRFVSRR-----DAEPTGEPESLVNRVSIADMGS 72
Query: 63 AVKENGLEDNERATAEKEFEKRMKSSSPQQTN-----SSRLDRTTVL----DDITSLNYI 113
+ ++ E R+ + R R++ + D L Y
Sbjct: 73 RARIEKPSTLPLELTQEVQEVRLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYN 132
Query: 114 PTDDRNTEIYDEITTWCSEILGDDIPHSIIVDATDLIIVTLKQDESVDLESKKKTIEVAL 173
P D E+YD I ++ + LGD P I+ A DLII LK D S+D + +KK IE L
Sbjct: 133 PLTDETREVYDYILSFIQQYLGDQSPE-ILRSAADLIIELLK-DSSLDEQGRKKQIEEVL 190
Query: 174 DTELDNASFNSLVKLVKSISDYYAESADT----GRTVNVAIXXXXXXXXXXXXXXXXXXX 229
TEL F+ LV L ++DY E + G +
Sbjct: 191 STELPQDRFSQLVNLGNRLTDYTVEQEEELNEEGVNESGVPVLFNEADEEEEAVEAMEED 250
Query: 230 XXXXXXXXXXXXXXXXYNEKTDNSNDNFSVRSDIMNNSESLQIQSAAVMEEIIDIKDIDG 289
EK + N + V + + +I + + ++ID
Sbjct: 251 EVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKVTEIPT-------VHPREIDA 303
Query: 290 FYLQRKIRKQLKNIEETKVQEMANNVYDLLANDISEEELTQNLHDIFGPDAKQLIRLIVS 349
F+LQR+I K + QE N ++ L+ D EL L IF + L++L+
Sbjct: 304 FWLQREIAKYFA--DAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTK 361
Query: 350 NRETLYWGHNLQRSANENIDEILG---EMAQRNLSHLVEAYKAK----PDSAKRKLNS-- 400
NR T+ L+R+A + +E LG ++ S ++EA + PD +LN+
Sbjct: 362 NRWTIVSCTMLKRAATD--EERLGVEEQIRAAGRSWILEALRPGAITIPDDGLNELNNNV 419
Query: 401 ----EP----EVGTKKQKIEAEDEPK-VIALDDLKLSQNTKFLSDVKISLPENSFKRVKD 451
EP E+ K + PK + L++ ++ ++ +S+ + LPE SF+R
Sbjct: 420 VEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 452 SYEEIHVPPPKK--VDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDAN 509
YEEIHVP P K + + LV+I+ LP+W+ AF T SLNRIQS +YP AF TD N
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAF--LNTQSLNRIQSHLYPIAFGTDEN 537
Query: 510 VLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQR 569
+LLCAPTGAGKTNVAML +L + + RE+ + F+L+ FK+VYIAPLKALVQE V F +
Sbjct: 538 ILLCAPTGAGKTNVAMLCILNELQKHLREDLS-FNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 570 RLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEV 629
RL + ++VAELTGDS L+KQQI ETQ++V TPEKWD+ITRK+ D S+ LVRL+IIDEV
Sbjct: 597 RLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEV 656
Query: 630 HLLHDERGPVIESIVARVLRDTTAEIP-TRLVALSATLPNYIDVAKFLHV-PDNGLFYFD 687
HLLHDERGPV+ESIVAR+ R + RLV LSATLPNY DVA FLHV P GLFYFD
Sbjct: 657 HLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFD 716
Query: 688 STFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTAR 747
ST+RPCPL Q++ GITEK K+ N+ACY+K+++ A + +QV+IFVHSRK+TA+TAR
Sbjct: 717 STYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGK-NQVLIFVHSRKETAKTAR 775
Query: 748 WLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSL 807
++ K + E+ I +D S EIL+ E+ + +D +L DL+PYGF IHHAG+ ++DR
Sbjct: 776 FIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQT 835
Query: 808 SEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRA 867
SEDLFADG ++VLVSTATLAWGVNLPAHTVIIKGT++YSPEK W L PQD+LQMLGRA
Sbjct: 836 SEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRA 895
Query: 868 GRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEA 927
GRP++D GEGIIIT S+++YYL+++NQQLPIESQ + ++ D LNAE+ LG V S+++
Sbjct: 896 GRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDG 955
Query: 928 VNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNYDSL 987
V+WLGY+YL VRM +SP LY++ D D L++ +++H+A LL+ L+ Y+
Sbjct: 956 VDWLGYTYLYVRMLRSPALYSVGPEYDD--DKYLVQKRADLLHSAAILLEKCKLLVYNRQ 1013
Query: 988 SKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNITVRQEEKT 1047
S ++ TELG+ A YNR L ++ I++ R+F+ S+EFK+I VR+EEK
Sbjct: 1014 SGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKV 1073
Query: 1048 ELEKLVERCPIPIKEKATDSLAKANILLQVYISKLRLEGFALNADMIYISQSAGRLFRAL 1107
EL KL+ER PIPI+E+ + AK N LLQ YIS+ RL+GFAL ADM+Y++QSAGR+ RA+
Sbjct: 1074 ELAKLLERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAI 1133
Query: 1108 FEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFRQFKRCPQEIIRRAEASGLPWNDFLL 1167
FE+ LR+GW + L L CK ++ R+WPT SP RQF CP E+IRR E PW +
Sbjct: 1134 FEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFD 1193
Query: 1168 LKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWDLDS 1227
L A E+GE + PK G+ ++++Q FP++ + +QP+T SL+R EL + + WD
Sbjct: 1194 LDPA-ELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHL 1252
Query: 1228 SSYSETFLVLVEDTDGEQTIYHETLHVGRNAINSIVYLDFVVFLKQKMLPPNYFVSVISE 1287
S SE F +LVED DG++ +++E + + + ++F V L + LPP YF+ ++S+
Sbjct: 1253 SGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEP-LPPCYFIKIVSD 1311
Query: 1288 KWLNCEYKIPVILSEIKLPKPFPPAISVSDSIKKSTKELQIDEFEALY-NFHSFNKVQTE 1346
+WL+ K+P+ + +P+ FP + D L F +LY NF FNK+QT+
Sbjct: 1312 RWLHSITKVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQ 1371
Query: 1347 VFDTLYHETENALICATKGSGKTIMAELSLLNHW-REGRGRAIYICPFKTKITELLKNWK 1405
VF+++Y ++ I A GSGKT+ AEL+LL+HW +E G A+YI P + + + W
Sbjct: 1372 VFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWY 1431
Query: 1406 KRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIIC 1465
+FS L GK++ +G D K + + LI TP++++ LS+RW ++IQ+++ IC
Sbjct: 1432 GKFSDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYIC 1491
Query: 1466 DDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIF 1525
D++ +G GP+YEI+I+R+ ++A QLEKNIR+VGL +ANA+D GEWLG IF
Sbjct: 1492 DELQLLGG-FYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIF 1550
Query: 1526 NFTALERQTPLTVDIETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVS 1585
NF+ +R PLT+ +++ + P+ I S S ++ VF DR
Sbjct: 1551 NFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQ 1610
Query: 1586 FATELVGLAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVR 1645
A +LV ++A + L + + NKV+D+ L+ L+ GI + + +D+N+V+
Sbjct: 1611 LAFDLVTFSMADEDEYLFSLME--NEAFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQ 1668
Query: 1646 KLHEYKVISILVASRDCCFDAPS-SSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFT 1704
L+ + +I +L+ASRD + + S+ V V TQY++G+E+RYIDYP++ +L+M+G +
Sbjct: 1669 YLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTAS 1728
Query: 1705 ASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCID 1764
+ + + L+T +KEYYKKFL + LP ES L + D +E + QT+E+KQD +D
Sbjct: 1729 IGSSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVD 1788
Query: 1765 LLTYTYLYRRIHANPSFYGIQDVTADEISSYLTELVEEAVTTMKETELISVEGEANDSTE 1824
LT++Y+YRR+ ANP++YG+QD+T + +S +L++LVE + + E LI+V+ E +
Sbjct: 1789 WLTWSYMYRRLVANPAYYGLQDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVA 1848
Query: 1825 IAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHD 1884
+ N +I++ + ++ +T+ F+ + S +M G ++ LP+R ++
Sbjct: 1849 L--------NLAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYE 1900
Query: 1885 IKPLRKLYDISPLKLSSE--FDPRSTTAKVFVLLQAHFSGLHLPMDLSLDLSEILSKAPS 1942
L +++ P++LS+ DP + K F+LL AHFS LP L +D IL++ +
Sbjct: 1901 DIVLERIHSRLPVRLSNPNYEDPHT---KSFILLAAHFSRFELPPGLVIDQKFILTRVHN 1957
Query: 1943 LAGTMVDILSMNGYLNA-TTAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNHNVET 2001
L G VD LS G+L A M++SQM+ Q +WD DSPLKQIP+FD ++E+C V
Sbjct: 1958 LLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNKEGVHD 2017
Query: 2002 VYDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTV 2061
V+D++ L+DE+R +++ + L K AEF+N YP+I++ + ++ S + + ++ V +
Sbjct: 2018 VFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQL 2077
Query: 2062 SR----DEEPETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYAIRKIALTKMTQDYELEIE 2117
+R DEE +T V + P +KTE WW+ I + + L AI+KI L + + ++E
Sbjct: 2078 TRELEEDEEVDT-TVIAPYFPAQKTEHWWLVISD--DKTLLAIKKITLGR-SLTTKMEFV 2133
Query: 2118 LEDPGDHELTIWCVCDSYLDADKEVTFNVNI 2148
G + + C DSY+ D E F N+
Sbjct: 2134 PPAMGTLKYKLSCFSDSYMGVDYEKEFECNV 2164
>Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2136
Score = 1403 bits (3631), Expect = 0.0
Identities = 808/2167 (37%), Positives = 1261/2167 (57%), Gaps = 85/2167 (3%)
Query: 16 YRYDEMSNQVLRADRSLIENRTDVHRDAEISQPKSMSGRIRLTEMGSAVKENGLEDNERA 75
Y Y SN VL+ADRSLI+ RD + S+ G++ T MG + + E
Sbjct: 11 YEYKANSNLVLQADRSLIDR---TRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQMQEER 67
Query: 76 TAEKEFEKRMKSSSPQQTNSSRLDRTTVLDDITSLNYIPTDDRNTEIYDEITTWCSEILG 135
A++ + + + L +D++ + Y P E Y+ + ++ LG
Sbjct: 68 RAKRRKRDEDRHDINKMKGYTLLSEG--IDEMVGIIYKPKTKETRETYEVLLSFIQAALG 125
Query: 136 DDIPHSIIVDATDLIIVTLKQDESVDLESKKKTIEVALDTELDNASFNSLVKLVKSISDY 195
D P I+ A D ++ LK ++ D E ++K I++ L + D+ ++ LV L K I+DY
Sbjct: 126 DQ-PRDILCGAADEVLAVLKNEKLRDKE-RRKEIDLLLG-QTDDTRYHVLVNLGKKITDY 182
Query: 196 YAESADTGRTVNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNE-KTDNSN 254
+ N+ Y E + + S+
Sbjct: 183 GGDKEIQNMDDNI----------------DETYGVNVQFESDEEEGDEDVYGEVREEASD 226
Query: 255 DNFSVRSDIMNNSESLQIQSAAVM----EEIIDIKDIDGFYLQRKIRKQLKNIEETKVQE 310
D+ ++ + S + ++ + ++ + +DID F+LQR++ + + + Q+
Sbjct: 227 DDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVS--QK 284
Query: 311 MANNVYDLLANDISEEELTQNLHDIFGPDAKQLIRLIVSNRETLYWGHNLQRSANENIDE 370
A+ V ++L + E L + G + I+++ +R + + L + +E E
Sbjct: 285 KADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKE 344
Query: 371 -ILGEM-AQRNLSH------------LVEAYKAKPDSAKR-KLNSEPEVGTKKQKIEAED 415
I+G+M A LS L+ +++ + ++ +++++ E Q EA
Sbjct: 345 RIMGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALA 404
Query: 416 EPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPP--PKKVDDNFPLVQI 473
+V+ L+DL +Q + F+++ + LP+ SF+R + YEE+HVP PK L+ +
Sbjct: 405 PRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPV 464
Query: 474 ESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMS 533
E LPK+A++ F +T LNRIQS++Y A TD N+LLCAPTGAGKTNVA++ +LR +
Sbjct: 465 EKLPKYAQAGFEGFKT--LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIG 522
Query: 534 HYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIE 593
+ + ++ FK++YIAP+++LVQE V F +RL +G+ VAELTGD L K++I
Sbjct: 523 KHINMD-GTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEIS 581
Query: 594 ETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDTT- 652
TQ++V TPEKWD+ITRK + ++ +LVRLII+DE+HLLHD+RGPV+E++VAR +R+
Sbjct: 582 ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEM 641
Query: 653 AEIPTRLVALSATLPNYIDVAKFLHV-PDNGLFYFDSTFRPCPLAQQYCGITEKNALKKK 711
+ RL+ LSATLPNY DVA FL V P GLFYFD++FRP PL Q Y GITEK A+K+
Sbjct: 642 TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF 701
Query: 712 NAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLE 771
MN+ Y+K++E A + +QV++FVHSRK+T +TAR + + +D + F S E
Sbjct: 702 QIMNEIVYEKIMEHAGK-NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTE 760
Query: 772 ILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVN 831
+L+TE+ + L DL+PYGF IHHAG+T+ DR+L EDLFAD ++VLVSTATLAWGVN
Sbjct: 761 VLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 820
Query: 832 LPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYL 891
LPAHTVIIKGT++YSPEK W L DILQMLGRAGRP+YD GEGI+IT+ +++YYL
Sbjct: 821 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYL 880
Query: 892 AVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQG 951
++LNQQLPIESQM+SK+ D LNAEIVLGNV + +AVNWLGY+YL +RM +SP LY +
Sbjct: 881 SLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI-- 938
Query: 952 SSGDMSDAELIRVNR-NIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXX 1010
S D+ L+ R ++VHTA +L N LV YD + + Q TELGR
Sbjct: 939 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTV 998
Query: 1011 AKYNRELTINSTLIDILRIFAMSEEFKNITVRQEEKTELEKLVERCPIPIKEKATDSLAK 1070
YN+ L + I++ R+F++S EFKNITVR+EEK EL+KL+ER PIP+KE + AK
Sbjct: 999 QTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAK 1058
Query: 1071 ANILLQVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCV 1130
N+LLQ +IS+L+LEGFAL ADM+Y++QSAGRL RA+FE+ L +GW +LT L +CK +
Sbjct: 1059 INVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMI 1118
Query: 1131 DSRMWPTNSPFRQFKRCPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAFDL 1190
D RMW + P RQF++ P+E++++ E P+ L N +E+GE +R PK GK
Sbjct: 1119 DKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDL-NHNEIGELIRMPKMGKTIHKY 1177
Query: 1191 LQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGEQTIYHE 1250
+ FPK+ + +QP+T S L+ EL + P + WD SE F +LVED D E ++HE
Sbjct: 1178 VHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHE 1237
Query: 1251 TLHVGRNAINSIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLPKPFP 1310
+ + F V + + LPP YF+ V+S++WL+CE ++PV + LP+ +P
Sbjct: 1238 YFLLKAKYAQDEHLITFFVPVFEP-LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYP 1296
Query: 1311 PAISVSDSIKKSTKELQIDEFEALY--NFHSFNKVQTEVFDTLYHETENALICATKGSGK 1368
P + D L+ FE+LY F FN +QT+VF+T+Y+ +N + A GSGK
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query: 1369 TIMAELSLLNH-WREGRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHD 1427
TI AE ++L + GR +YI P + ++ +W ++F K++ +G D
Sbjct: 1357 TICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV-LLTGETSTD 1415
Query: 1428 QKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRM 1487
K L + ++I++TP +++ LSRRW +RKN+Q I L + D++H IG E GP+ E+I +RM
Sbjct: 1416 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRM 1474
Query: 1488 IFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIETSILVK 1547
+I++Q+E+ IRIV L + L+NAKD WLG +S FNF R PL + I+ +
Sbjct: 1475 RYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQ-GFNIS 1533
Query: 1548 SPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVA--KGIDLLRAE 1605
+ +++ + V + SP + + VFV R + A +++ A + L
Sbjct: 1534 HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT 1593
Query: 1606 ESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASRDCCFD 1665
E L YL K+ DS LK L +G+G L++G+ +R +V +L I ++VASR C+
Sbjct: 1594 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWG 1653
Query: 1666 A-PSSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEY 1724
++ V + TQY+ G+ + Y+DYP+ +L+M+G A + ++ +K++
Sbjct: 1654 MNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1713
Query: 1725 YKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGI 1784
+KKFL + LP ES L + + D E +T+E KQD +D LT+T+LYRR+ NP++Y +
Sbjct: 1714 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1773
Query: 1785 QDVTADEISSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISPNNACLISAIHAV 1844
Q ++ +S +L+ELVE+ ++ +++++ IS+E E + ++P N +I+A + +
Sbjct: 1774 QGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMD---------VAPLNLGMIAAYYYI 1824
Query: 1845 SCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLSSE-- 1902
+ TI FS + + ++ G ++ +P+R H+ LR+L P KL++
Sbjct: 1825 NYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKF 1884
Query: 1903 FDPRSTTAKVFVLLQAHFSGLHLPMDLSLDLSEILSKAPSLAGTMVDILSMNGYLN-ATT 1961
DP K +LLQAH S + L +L D EILSKA L VD+LS NG+L+ A
Sbjct: 1885 NDPH---VKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALA 1941
Query: 1962 AMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNHNVETVYDVMALEDEEREDIITLPE 2021
AM+L+QM+ Q +W DS LKQ+P F ++ +++C + VE+V+D+M +EDEER ++ L +
Sbjct: 1942 AMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTD 2001
Query: 2022 NKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTVSRDEEPETLNVSSKSLPHEK 2081
+++ VA F N YPNIEL Y + ++ +V V + R+EE T V + P ++
Sbjct: 2002 SQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEE-VTGPVIAPLFPQKR 2060
Query: 2082 TEAWWIFIGEKSSRQLYAIRKIALTKMTQDYELEIELEDPGDHELTIWCVCDSYLDADKE 2141
E WW+ IG+ S L +I+++ L + + +L+ G H T++ + D+Y+ D+E
Sbjct: 2061 EEGWWVVIGDAKSNSLISIKRLTLQQKAK-VKLDFVAPATGAHNYTLYFMSDAYMGCDQE 2119
Query: 2142 VTFNVNI 2148
F+V++
Sbjct: 2120 YKFSVDV 2126
>At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2171
Score = 1345 bits (3481), Expect = 0.0
Identities = 811/2189 (37%), Positives = 1234/2189 (56%), Gaps = 115/2189 (5%)
Query: 27 RADRSLIENRTDVHRDAE--ISQPKSMSGRIRLTEMGSAV---KENGLEDNERATAEKEF 81
RA+ SL+ + RD +P+++ G+I G V + LED + + +KE
Sbjct: 20 RANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKGRPQELEDKLKKSKKKER 79
Query: 82 EKRMKSSSPQQTNSSRLDRTTVLDDITSLNYIPTDDRNTEIYDEITTWCSEILGDDIPHS 141
+ + +Q+ RL +VL D Y P Y+ + + LG P S
Sbjct: 80 DVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYEAMLGLIQKQLGGQ-PPS 138
Query: 142 IIVDATDLIIVTLKQDESVDLESKKKTIEVALDTELDNASFNSLVKLVKSISDYYAESAD 201
I+ A D I+ LK D + E KK IE L+ +++N F+ LV + K I+D+ E D
Sbjct: 139 IVSGAADEILAVLKNDAFRNPE-KKMEIEKLLN-KIENHEFDQLVSIGKLITDFQ-EGGD 195
Query: 202 TGRTVNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNEKTDNSNDNFSVRS 261
+G E+ D+ D+ R+
Sbjct: 196 SG---------GGRANDDEGLDDDLGVAVEFEENEEDDEESDPDMVEEDDDEEDDEPTRT 246
Query: 262 DIMNNSESLQIQSAAVMEE--IIDIKDIDGFYLQRKIRKQLKN-IEETKVQEMANNVYDL 318
M + + A E ++++DID ++LQRKI + + I+ + Q +A + +
Sbjct: 247 GGMQVDAGINDEDAGDANEGTNLNVQDIDAYWLQRKISQAYEQQIDPQQCQVLAEELLKI 306
Query: 319 LAND---ISEEELTQNLHDIFGPDAKQLIRLIVSNRETLYWGHNLQRSANEN----IDEI 371
LA + E++L +L + L++ ++ NR + W L R+ ++ I+E
Sbjct: 307 LAEGDDRVVEDKLLMHLQY----EKFSLVKFLLRNRLKVVWCTRLARAEDQEERNRIEEE 362
Query: 372 LGEMAQRNLSHLVEAYKAKPDSAKRKLNSEPEVGTKKQKIEAED---------------- 415
+ + + + + + + + +R+ N + + + ++++ E
Sbjct: 363 MRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDVADRDS 422
Query: 416 -------EPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVP-PPKKVDDN 467
+ +++ L+ L Q +++ K LP S++ Y+E+HVP KKVD N
Sbjct: 423 ESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSKKVDRN 482
Query: 468 FPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLT 527
LV+I +P WA+ AF + LNR+QS+VY TA N+LLCAPTGAGKTNVAMLT
Sbjct: 483 EKLVKITEMPDWAQPAFKGMQ--QLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLT 540
Query: 528 VLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNL 587
+L+ + R ++ +K+VY+AP+KALV E V RL +GV V EL+GD +L
Sbjct: 541 ILQQLE-MNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSL 599
Query: 588 SKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARV 647
+ ++IEETQ++V TPEKWD+ITRKS D ++ +LVRL+IIDE+HLLHD RGPV+ESIVAR
Sbjct: 600 TGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVART 659
Query: 648 LR--DTTAEIPTRLVALSATLPNYIDVAKFLHVP-DNGLFYFDSTFRPCPLAQQYCGITE 704
LR +TT E RLV LSATLPNY DVA FL V GLF FD ++RP PL QQY GI+
Sbjct: 660 LRQIETTKE-NIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISV 718
Query: 705 KNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQG 764
K L++ MN CY K+L A + HQV+IFVHSRK+T++TAR + + D +S F
Sbjct: 719 KKPLQRFQLMNDLCYQKVLAGAGK-HQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLK 777
Query: 765 TDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTA 824
D + ++L + + L D++PYGF IHHAGL++ DR + E LF+ G ++VLVSTA
Sbjct: 778 EDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTA 837
Query: 825 TLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQ 884
TLAWGVNLPAHTVIIKGT++Y+PEK W+ L P D++QMLGRAGRP+YD +GEGIIIT
Sbjct: 838 TLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGY 897
Query: 885 SDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSP 944
S+++YYL+++N+QLPIESQ ISK+ D LNAEIVLG V + EA +WLGY+YL +RM ++P
Sbjct: 898 SELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNP 957
Query: 945 HLYNLQGSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXX 1004
LY L D L +++H+A +L N LV YD S Q T+LGR
Sbjct: 958 TLYGL-APDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016
Query: 1005 XXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNITVRQEEKTELEKLVERCPIPIKEKA 1064
A YN L ID+ R+F++S+EFK +TVRQ+EK EL KL++R PIPIKE
Sbjct: 1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076
Query: 1065 TDSLAKANILLQVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLL 1124
+ AK N+LLQ YIS+L+LEG +L +DM+YI+QSAGRL RAL+E+ L++GW +L + L
Sbjct: 1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136
Query: 1125 TICKCVDSRMWPTNSPFRQFKRCPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNG 1184
+ K V RMW +P RQF +I+ + E L W + L +A E+GE +RSPK G
Sbjct: 1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDL-SAQELGELIRSPKMG 1195
Query: 1185 KVAFDLLQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGE 1244
K + +FPK+ + +QP+T ++L EL + P ++WD Y E F ++VED DGE
Sbjct: 1196 KPLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGE 1255
Query: 1245 QTIYHETLHVGRNAINSIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIK 1304
+ ++HE + + I+ L F V + + LPP YFV V+S+KWL E +PV +
Sbjct: 1256 KILHHEYFLLKKQYIDEDHTLHFTVPIFEP-LPPQYFVRVVSDKWLGSETVLPVSFRHLI 1314
Query: 1305 LPKPFPPAISVSDSIKKSTKELQIDEFEALY-NFHSFNKVQTEVFDTLYHETENALICAT 1363
LP+ +PP + D L+ +E LY +F FN VQT+VF LY+ +N L+ A
Sbjct: 1315 LPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAP 1374
Query: 1364 KGSGKTIMAELSLLNHWREGRG---RAIYICPFKTKITELLKNWKKRFSHLAGGKLINAF 1420
GSGKTI AE ++L + EG R +YI P + E + W+ +F G +++
Sbjct: 1375 TGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVE-L 1433
Query: 1421 SGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMY 1480
+G D K L + +I++TP +++ LSRRW +RK +Q++ L I D++H IG + GP+
Sbjct: 1434 TGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQ-HGPVL 1492
Query: 1481 EIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDI 1540
E+I++RM +I++Q+ IRIV L T LANAKD GEW+GA +FNF R PL + I
Sbjct: 1493 EVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHI 1552
Query: 1541 E----TSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVG---L 1593
+ +S + + T IV+ A + VFV R A +L+ +
Sbjct: 1553 QGVDISSFEARMQAMTKPTYTAIVQH----AKNKKPAIVFVPTRKHVRLTAVDLMAYSHM 1608
Query: 1594 AVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVI 1653
+ D L + L ++ ++++ LK L GIG L++G+ D+ +V +L E I
Sbjct: 1609 DNPQSPDFLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRI 1668
Query: 1654 SILVASRDCCFDAP-SSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAH 1712
+ V S C+ P ++ V V TQY++GREN + DYPV +L+MMG A
Sbjct: 1669 QVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGK 1728
Query: 1713 AKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLY 1772
+ RKEYYKKFL + P ES L + + D E +E KQD +D LT+T++Y
Sbjct: 1729 CVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMY 1788
Query: 1773 RRIHANPSFYGIQDVTADEISSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISP 1832
RR+ NP++Y +Q V+ +S +L+ELVE ++ ++ ++ I VE E +SP
Sbjct: 1789 RRLPQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEME---------LSP 1839
Query: 1833 NNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLY 1892
N +I++ + +S TI FS S +M G + +P+R + +R+L
Sbjct: 1840 LNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRL- 1898
Query: 1893 DISPLKLSSEFDPRSTT--AKVFVLLQAHFSGLHLPMDLSLDLSEILSKAPSLAGTMVDI 1950
I+ + S E +P+ T K LLQAHFS ++ +L++D ++L A L MVD+
Sbjct: 1899 -INHQRFSFE-NPKCTDPHVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDV 1956
Query: 1951 LSMNGYLN-ATTAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNH---NVETVYDVM 2006
+S NG+LN A AM++SQM+ QG+W+ DS L Q+P F D+ ++C+ + N+ETV+D++
Sbjct: 1957 ISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLV 2016
Query: 2007 ALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTVSRDEE 2066
+EDEER++++ + + +L +A F N +PNI+L Y + S + P + + V + RD E
Sbjct: 2017 EMEDEERQELLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDME 2076
Query: 2067 --PETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYAIRKIALTKMTQDYELEIELE----- 2119
E V S P K E WW+ +G+ + QL AI++++L + +++++L+
Sbjct: 2077 GRTEVGPVDSLRYPKTKEEGWWLVVGDTKTNQLLAIKRVSLQR-----KVKVKLDFTAPS 2131
Query: 2120 DPGDHELTIWCVCDSYLDADKEVTFNVNI 2148
+PG+ T++ +CDSYL D+E +F+V++
Sbjct: 2132 EPGEKSYTLYFMCDSYLGCDQEYSFSVDV 2160
>At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2172
Score = 1325 bits (3429), Expect = 0.0
Identities = 815/2205 (36%), Positives = 1240/2205 (55%), Gaps = 116/2205 (5%)
Query: 7 ERKQKIKEIYRYDEMSNQVLRADRSLIENRTDVHRDAEISQPKSMSGRIRLTEMGS-AVK 65
E + ++K+ Y Y S+ VL +D E R D H + +P+S+ GRI G V+
Sbjct: 10 EEQARLKQ-YGYKVNSSLVLNSD----ERRRDTHESS--GEPESLRGRIDPKSFGDRVVR 62
Query: 66 ENGLEDNERATAEKEFEKRMKSS-SPQQTNSSRLDRTTVLDDITSLNYIPTDDRNTEIYD 124
E +ER K+ ++R S +++ RL +VL+D Y P ++
Sbjct: 63 GRPHELDERLNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFE 122
Query: 125 EITTWCSEILGDDIPHSIIVDATDLIIVTLKQDESVDLESKKKTIEVALDTELDNASFNS 184
+ + LG P I+ A D I+ LK +ESV KK IE L+ D F+
Sbjct: 123 IMLGLIQQQLGGQ-PLDIVCGAADEILAVLK-NESVKNHEKKVEIEKLLNVITDQV-FSQ 179
Query: 185 LVKLVKSISDYYAESADTGRTVNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 244
V + K I+DY E D+
Sbjct: 180 FVSIGKLITDY-EEGGDS----------LSGKASEDGGLDYDIGVALECEEDDDESDLDM 228
Query: 245 XYNEKTDNSNDNFSV-RSDIMNNSESLQIQSAAVMEE--IIDIKDIDGFYLQRKIRKQLK 301
+EK + D + ++ ++ ++ + A +E +++ DID ++LQRKI ++ +
Sbjct: 229 VQDEKDEEDEDVVELNKTGVVQVGVAINGEDARQAKEDTSLNVLDIDAYWLQRKISQEYE 288
Query: 302 N-IEETKVQEMANNVYDLLANDISEEELTQNLHDIFGPDAKQLIRLIVSNRETLYWGHNL 360
I+ + QE+A + +LA ++ ++ L + + L++ ++ NR + W L
Sbjct: 289 QKIDAQECQELAEELLKILAEG-NDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRL 347
Query: 361 -----QRSANENIDEILGEMAQRNLSHLVEAYKAKPDSAK-RKLNSEPEVGTKKQKIEAE 414
Q N+ +E+LG ++ L+ +V+ AK +AK R+ E ++ + Q + +
Sbjct: 348 ARGRDQEERNQIEEEMLGLGSE--LAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDD 405
Query: 415 D------------------------EPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVK 450
D + +V+ L+ L +Q + K LP+ SF+
Sbjct: 406 DSGVDGDRGMRDVDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRG 465
Query: 451 DSYEEIHVP-PPKKVDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDAN 509
++E+HVP KK D N LV+I LP+WA+ AF + LNR+QS+VY TA N
Sbjct: 466 KEFDEVHVPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQ--QLNRVQSKVYGTALFKADN 523
Query: 510 VLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQR 569
+LLCAPTGAGKTNVA+LT+L + F+ +K+VY+AP+KALV E V +
Sbjct: 524 ILLCAPTGAGKTNVAVLTILHQLG-LNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQ 582
Query: 570 RLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEV 629
RL FGV V EL+GD +L+ Q+I+ETQ++V TPEKWD+ITRKS D ++ +LVRL+IIDE+
Sbjct: 583 RLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEI 642
Query: 630 HLLHDERGPVIESIVARVLR--DTTAEIPTRLVALSATLPNYIDVAKFLHVP-DNGLFYF 686
HLL D RGPV+ESIVAR LR ++T E RLV LSATLPN DVA FL V NGLF F
Sbjct: 643 HLLDDNRGPVLESIVARTLRQIESTKE-HIRLVGLSATLPNCDDVASFLRVDLKNGLFIF 701
Query: 687 DSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTA 746
D ++RP PL QQY GI K L++ MN CY K++ A + HQV+IFVHSRK+TA+TA
Sbjct: 702 DRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVAVAGK-HQVLIFVHSRKETAKTA 760
Query: 747 RWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRS 806
R + + D +S F D S EILK + + L +L+PYGF IHHAGLT+ DR
Sbjct: 761 RAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDRE 820
Query: 807 LSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGR 866
+ E+ F G L+VL+STATLAWGVNLPAHTVIIKGT++Y+PE+ +W+ L P D++QM+GR
Sbjct: 821 IVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGR 880
Query: 867 AGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDE 926
AGRP+YD GEGIIIT S ++YYL ++N+QLPIESQ ISK+ D LNAEIVLG + + E
Sbjct: 881 AGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNARE 940
Query: 927 AVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNR--NIVHTALNLLQNNGLVNY 984
A +WLGY+YL VRM ++P LY G S D +L+ R +++H+A +L N L+ Y
Sbjct: 941 ACHWLGYTYLYVRMVRNPTLY---GVSPDALAKDLLLEERRADLIHSAATILDKNNLIKY 997
Query: 985 DSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNITVRQE 1044
D S Q T+LGR A YN L I++ R+F++SEEFK +TVRQ+
Sbjct: 998 DRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQD 1057
Query: 1045 EKTELEKLVERCPIPIKEKATDSLAKANILLQVYISKLRLEGFALNADMIYISQSAGRLF 1104
EK EL KL++R PIP+KE D AK N+LLQVYISKL+LEG +L +DM+YI+QSAGRL
Sbjct: 1058 EKMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLL 1117
Query: 1105 RALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFRQFKRCPQEIIRRAEASGLPWND 1164
RA+FE+ L++GW +L++ L + K V RMW +P QF P+EI+ + E + L W
Sbjct: 1118 RAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWER 1177
Query: 1165 FLLLKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWD 1224
+ L ++ E+GE + +PK G+ + +FPK+ + +QP++ S+L+ EL + P + WD
Sbjct: 1178 YYDL-SSQELGELICNPKMGRPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWD 1236
Query: 1225 LDSSSYSETFLVLVEDTDGEQTIYHETLHVGRNAINSIVYLDFVVFLKQKMLPPNYFVSV 1284
++ Y E F ++VED DGE+ ++HE + I+ L+F V + + +PP YF+ V
Sbjct: 1237 DKANKYVEPFWIIVEDNDGEKILHHEYFLFKKRVIDEDHTLNFTVPISEP-IPPQYFIRV 1295
Query: 1285 ISEKWLNCEYKIPVILSEIKLPKPFPPAISVSDSIKKSTKELQIDEFEALY-NFHSFNKV 1343
+S+KWL+ +PV + LP+ +PP + D L+ +E LY +F FN V
Sbjct: 1296 VSDKWLDSPTVLPVSFRHLILPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPV 1355
Query: 1344 QTEVFDTLYHETENALICATKGSGKTIMAELSLLNHWREGRG---RAIYICPFKTKITEL 1400
QT+VF LY+ ++N ++ A GSGKTI AE ++L + EG R +YI P + E
Sbjct: 1356 QTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQ 1415
Query: 1401 LKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRI 1460
++W+K+F G +++ +G D K L + +I++TP +++ LSRRW +RK IQ++
Sbjct: 1416 FRDWEKKFGKGLGLRVVE-LTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQV 1474
Query: 1461 ELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAK 1520
L I D++H IG + G + E+I++RM +I++Q+ IRIV L T LANAKD GEW+GA
Sbjct: 1475 SLFIVDELHLIGGQ-GGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGAS 1533
Query: 1521 KSSIFNFTALERQTPLTVDIE----TSILVKSPTSNRMALTEIVESSNRVASPDETITVF 1576
+FNF R PL + I S + + T IV+ A + VF
Sbjct: 1534 SCGVFNFPPNVRPVPLEIHIHGVDILSFEARMQAMTKPTYTAIVQH----AKNKKPAIVF 1589
Query: 1577 VTDRYECVSFATELVG---LAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILY 1633
V R A +L+ + K D L L +L ++ + LK L+ GIG L+
Sbjct: 1590 VPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEPFLIQICEETLKETLRHGIGYLH 1649
Query: 1634 QGMHYSDRNVVRKLHEYKVISILVASRDCCFDAP-SSSFVFVTTTQYFEGRENRYIDYPV 1692
+G+ D+ +V +L E I + V S C+ P + V V T +++GREN + DYP+
Sbjct: 1650 EGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPI 1709
Query: 1693 NTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFA 1752
+ +L+MMG + RKEYYKKFL + LP ES L + + D E
Sbjct: 1710 SNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVV 1769
Query: 1753 NQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADEISSYLTELVEEAVTTMKETEL 1812
+ +E KQD +D LT++++YRR+ NP++Y + V+ +S +L+ELVE ++ ++ ++
Sbjct: 1770 ARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLGVSHRHLSDHLSELVENTLSDLEVSKC 1829
Query: 1813 ISVEGEANDSTEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXX 1872
I ++ E + +SP N +I++ + ++ TI FS + +M G
Sbjct: 1830 IEIDNELD---------LSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSA 1880
Query: 1873 XXFKTLPLRLHDIKPLRKLYDISPLKLSSEFDPRST--TAKVFVLLQAHFSGLHLPMDLS 1930
+ +P+R + +R+L I+ + S + +PR T K LLQAHFS + +L
Sbjct: 1881 SEYDLIPIRPGEEDAVRRL--INHQRFSFQ-NPRCTDPRVKTSALLQAHFSRQKISGNLV 1937
Query: 1931 LDLSEILSKAPSLAGTMVDILSMNGYLN-ATTAMDLSQMIVQGVWDTDSPLKQIPFFDTD 1989
+D E+L A L MVD++S NG LN A AM++SQM+ QG+WD DS L Q+P F D
Sbjct: 1938 MDQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKD 1997
Query: 1990 ILEKC---KNHNVETVYDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALDMS 2046
+ ++C +N+ET++D++ +ED++R++++ + + +L +A F N +PNI+L Y + S
Sbjct: 1998 LAKRCHENPGNNIETIFDLVEMEDDKRQELLQMSDAQLLDIARFCNRFPNIDLTYEIVGS 2057
Query: 2047 APMKPHDKKMVTVTVSRDEE--PETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYAIRKIA 2104
+ P + V + RD E E V + P K E WW+ +GE + QL AI++I+
Sbjct: 2058 NEVSPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVGEAKTNQLMAIKRIS 2117
Query: 2105 LTKMTQDYELEIEL-EDPGDHELTIWCVCDSYLDADKEVTFNVNI 2148
L + Q +LE + + G+ T++ +CDSYL D+E +F V++
Sbjct: 2118 LQRKAQ-VKLEFAVPTETGEKSYTLYFMCDSYLGCDQEYSFTVDV 2161
>CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2145
Score = 1286 bits (3327), Expect = 0.0
Identities = 735/1907 (38%), Positives = 1127/1907 (58%), Gaps = 73/1907 (3%)
Query: 281 IIDIKDIDGFYLQRKIRKQLKNIEETKVQEMANNVYDLLANDISEEELTQNLHDIFGPDA 340
I+ +DID ++QR + K K + Q+ V +L N + + L + G D
Sbjct: 254 ILHPRDIDAHWIQRSLAKYFK--DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQ 311
Query: 341 KQLIRLIVSNRETLYWGHNLQRSANEN--------------IDEILGEMAQRNLSHLVEA 386
+ I+ + NR + + L R ANE + IL + + + +V+
Sbjct: 312 FEFIKCLRQNRLMILYC-TLLRQANEKERLQIEDDMRSRPELHPILALLQETDEGSVVQV 370
Query: 387 YKAKPDSAKRKLNSEPEVGTKKQKIEA---EDEPKVIALDDLKLSQNTKFLSDVKISLPE 443
K+K D+ K S+ + I A + K++ L+DL SQ + +S+ + LP+
Sbjct: 371 EKSKRDAEK----SKKAATAANEAISAGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPD 426
Query: 444 NSFKRVKDSYEEIHVPP--PKKVDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYP 501
S++R K SYEEIHVP P+ + LV + LPKWA+ AF + SLNRIQS +
Sbjct: 427 GSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYK--SLNRIQSRLCD 484
Query: 502 TAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQ 561
+A + ++LLCAPTGAGKTNVA+LT+L+ + ++ E+ + L +FK+VYIAP+K+LVQ
Sbjct: 485 SALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAED-GSVKLDEFKIVYIAPMKSLVQ 543
Query: 562 EQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLV 621
E V F +RL FG+ V E+TGD+ +SK+Q TQ++V TPEK+DV+TRK + +++++V
Sbjct: 544 EMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMV 603
Query: 622 RLIIIDEVHLLHDERGPVIESIVARVLRDTTAEIPT-RLVALSATLPNYIDVAKFLHVPD 680
RL+IIDE+HLLHD+RGPV+ESIV R +R RLV LSATLPNY DVA FL V
Sbjct: 604 RLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKP 663
Query: 681 NGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRK 740
L +FD+++RP PL QQY G+TEK ALK+ AMN+ YDK++E A + QV++FVHSRK
Sbjct: 664 EHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKS-QVLVFVHSRK 722
Query: 741 DTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGL 800
+TA+TA+ + + +D +SAF S EIL+TE+ A + L DL+PYGF IHHAG+
Sbjct: 723 ETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGM 782
Query: 801 TKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDI 860
+ DR+L EDLFAD ++VL STATLAWGVNLPAHTVIIKGT++Y+PEK W L DI
Sbjct: 783 NRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDI 842
Query: 861 LQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGN 920
+QMLGRAGRP+YD GEGI+ITN S+++YYL+++NQQLP+ESQM+S++ D LNAE+VLG
Sbjct: 843 MQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGT 902
Query: 921 VTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNRNIVHTALNLLQNNG 980
V+S+ EA NWLGY++L VRM ++P LY + +D L + +++HTA LL G
Sbjct: 903 VSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQA-RADPLLEQRRADLIHTACVLLDKAG 961
Query: 981 LVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNIT 1040
L+ YD S +Q TELGR YN+ L + ID+ RIF+MS EFK ++
Sbjct: 962 LIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLS 1021
Query: 1041 VRQEEKTELEKLVERCPIPIKEKATDSLAKANILLQVYISKLRLEGFALNADMIYISQSA 1100
VR EEK EL+K+ E PIPIKE ++ AK N+LLQ YIS+L+LEGFAL ADM++++QSA
Sbjct: 1022 VRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSA 1081
Query: 1101 GRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFRQFKRCPQEIIRRAEASGL 1160
GRLFRALFE+ L +GW L + +LT+CK V R W + +P QFK+ P E++R +
Sbjct: 1082 GRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNY 1141
Query: 1161 PWNDFLLLKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQPVTNSLLRFELELQPT 1220
+ D L + H++G+ ++ PK GK F +++FPK+ + +QP+T + +R EL + P
Sbjct: 1142 SF-DRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPD 1200
Query: 1221 WIWDLDSSSYSETFLVLVEDTDGEQTIYHETLHVGRNAINSIVYLDFVVFLKQKMLPPNY 1280
+ WD +E F + +EDTDGE+ ++HE + + + + +V + M PP Y
Sbjct: 1201 FKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPM-PPLY 1259
Query: 1281 FVSVISEKWLNCEYKIPVILSEIKLPKPFPPAISVSDSIKKSTKELQIDEFEALY---NF 1337
+V ++S++W+ E +P+ + LP+ +PP + D + EF+ ++ F
Sbjct: 1260 YVRIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGF 1319
Query: 1338 HSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNHWRE-GRGRAIYICPFKTK 1396
FN +QT+VF T++ EN ++CA GSGKT +AEL++L H+ +A+YI P +
Sbjct: 1320 KVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDM 1379
Query: 1397 ITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKN 1456
T++ +WK+R G ++ +G D K + LI++TP ++ +SRRW +RK+
Sbjct: 1380 ATKVYADWKRRLEPAIGHTIV-LLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKS 1438
Query: 1457 IQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEW 1516
+Q ++L I DD+H IG G ++E++ +R +I++QLE +R+V L + L NA+D G W
Sbjct: 1439 VQNVKLFIADDLHMIGAS-NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMW 1497
Query: 1517 LGAKKSSIFNFTALERQTPLTVDIETSILVKSPTSNRMALTE--IVESSNRVASPDE--T 1572
LG S+ FNF R PL ++I++ L S ++R A E + ++ R A E
Sbjct: 1498 LGCSASATFNFMPSTRPVPLDLEIKSFNL--SHNASRFAAMERPVYQAICRHAGKLEPKP 1555
Query: 1573 ITVFVTDRYECVSFATELVGLAVAKGID----LLRAEESSLHSYLNKVQDSNLKTLLQSG 1628
VFV R + A L+ +A+A G L + + + L ++D +L+ + G
Sbjct: 1556 ALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCG 1615
Query: 1629 IGILYQGMHYSDRNVVRKLHEYKVISILVASRDCCFDAPSSSF-VFVTTTQYFEGRENRY 1687
+G L++G D ++V++L E I + V R C+ S++ V V TQ++ G+ + Y
Sbjct: 1616 VGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVY 1675
Query: 1688 IDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLL 1747
DYP+ +L M+G A A ++ ++ YYKKFLCD LP ES L + + D
Sbjct: 1676 EDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHF 1735
Query: 1748 TTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADEISSYLTELVEEAVTTM 1807
E +T+E KQD ID LT+T LYRR+ NP++Y +Q T +S L+ELVE + +
Sbjct: 1736 NAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDL 1795
Query: 1808 KETELISVEGEANDSTEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXX 1867
+ ++ I+V+ E D+ + N +I++ + +S TI FS + +
Sbjct: 1796 ENSKCIAVKDEM-DTVSL--------NLGMIASYYYISYQTIELFSMSLKEKTKTRALIE 1846
Query: 1868 XXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLSSE--FDPRSTTAKVFVLLQAHFSGLHL 1925
F +P+R + LR+L + P +L ++ DP KV +L+ AH S + L
Sbjct: 1847 IISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPH---VKVNLLIHAHLSRVKL 1903
Query: 1926 PMDLSLDLSEILSKAPSLAGTMVDILSMNGYLN-ATTAMDLSQMIVQGVWDTDSPLKQIP 1984
+L+ D I+ +A L VD+LS NG+L+ A AM+LSQM+ Q ++ + LKQ+P
Sbjct: 1904 TAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLP 1963
Query: 1985 FFDTDILEKCKNHNVETVYDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALD 2044
+LE+ K V +V++++ LE+++R DI+ + +L VA F N YP+IE+ L+
Sbjct: 1964 HCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELE 2023
Query: 2045 MSAPMKPHDKKMVTVTVSRDEEPETL--NVSSKSLPHE-KTEAWWIFIGEKSSRQLYAIR 2101
+ +D M+ V++ RD + + L V + P + K E WW+ IG+ S L I+
Sbjct: 2024 NDV-VTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIK 2082
Query: 2102 KIALTKMTQDYELEIELEDPGDHELTIWCVCDSYLDADKE--VTFNV 2146
++ + + + +L+ PG H+ ++ + DSYL AD+E V F V
Sbjct: 2083 RLVINEKS-SVQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFKV 2128
Score = 53.1 bits (126), Expect = 5e-06
Identities = 50/186 (26%), Positives = 85/186 (44%), Gaps = 19/186 (10%)
Query: 16 YRYDEMSNQVLRADRSLIENRTDVHRDAEISQPKSMSGRIRLTEMGS-AVKENG-LEDNE 73
Y Y + SN VL D +L + R E+ +R +MG A+K ++D +
Sbjct: 11 YEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKE--MRKMKMGDRAIKGKAPVQDQK 68
Query: 74 RATAEKEFEKRMKSSSPQQTNSSRLDRTTVLDDITSLN-YIPTDDRNTEIYDEITTWCSE 132
+ +K+ EK + + R ++D+ + Y P + Y+ I ++ +
Sbjct: 69 KKRKKKDDEK-----------AQQFGRNVLVDNNELMGAYKPRTQETKQTYEVILSFILD 117
Query: 133 ILGDDIPHSIIVDATDLIIVTLKQDESVDLESKKKTIEVALDTELDNASFNSLVKLVKSI 192
LGD +P ++ A D +++TLK D+ D E KKK +E L D+ L+ L K I
Sbjct: 118 ALGD-VPREVLCGAADEVLLTLKNDKFRDKE-KKKEVEALLGPLTDD-RIAVLINLSKKI 174
Query: 193 SDYYAE 198
SD+ E
Sbjct: 175 SDFSIE 180
>Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1866
Score = 979 bits (2532), Expect = 0.0
Identities = 610/1790 (34%), Positives = 957/1790 (53%), Gaps = 94/1790 (5%)
Query: 429 QNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPKKVDDNFPL--VQIESLPKWARSAFPT 486
+ + F++ K+ LPE + YEE+ +P + + +F V I+ L + + AF
Sbjct: 78 KTSAFIAGAKMILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKG 137
Query: 487 SETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLK 546
+ LNRIQS V+ TA+NT+ N+L+CAPTGAGKTN+AMLTVL + ++++
Sbjct: 138 MKR--LNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQ--GVIKKN 193
Query: 547 KFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWD 606
+FK+VY+AP+KAL E F RRL G+ V ELTGD LSK +I TQ+LV TPEKWD
Sbjct: 194 EFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWD 253
Query: 607 VITRKST-DTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDT-TAEIPTRLVALSA 664
V+TRKS D + ++VRL+I+DEVHLLH++RGPV+ESIVAR LR + + R++ LSA
Sbjct: 254 VVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 313
Query: 665 TLPNYIDVAKFLHV-PDNGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLL 723
TLPNY+DVA FLHV P GLF+FD FRP PL Q + GI N +++ N M++ CY+ +L
Sbjct: 314 TLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVL 373
Query: 724 EAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDR 783
+ K GHQV++FVH+R T RTA LI++ N I F T + + + + ++
Sbjct: 374 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNK 433
Query: 784 SLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTE 843
+ +L P GF IHHAG+ + DR+L E+LF++G +KVLV TATLAWGVNLPAH VIIKGT+
Sbjct: 434 QVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 493
Query: 844 MYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQ 903
+Y+ ++ +V L D++Q+ GRAGRP++D GEGIIIT + +YL +L Q+ PIESQ
Sbjct: 494 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQ 553
Query: 904 MISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIR 963
+ + DNLNAEI LG VT+++EAV W+ Y+YL VRM+ +P Y + + + D L +
Sbjct: 554 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQI-DPTLRK 612
Query: 964 VNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTL 1023
+V L ++ ++ + T+LGR +N + T
Sbjct: 613 HREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTE 672
Query: 1024 IDILRIFAMSEEFKNITVRQEEKTELEKLVER-CPIPIKEKATDSLAKANILLQVYISKL 1082
DI I + +EEF I VR+EE EL+ L+ C + +S K NILLQ YIS+
Sbjct: 673 GDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRG 732
Query: 1083 RLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFR 1142
++ F+L +D Y++Q+A R+ RALFE+ LRK WP +T LL + K +D R+W SP R
Sbjct: 733 EMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLR 792
Query: 1143 QFKRCPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCA 1202
QF P I+ R E L D L E+G L G + + P + + +
Sbjct: 793 QFSILPPHILTRLEEKKLT-VDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEAS 851
Query: 1203 MQPVTNSLLRFELELQPTWIW-DLDSSSYSETFLVLVEDTDGEQTIYHET--LHVGRNAI 1259
+QP+T ++LR L + + W D + E + + VED + IYH L + + I
Sbjct: 852 IQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDH-IYHSEYFLALKKQVI 910
Query: 1260 NSIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLPKPFPPAISVSDSI 1319
+ L + LP Y++ +S++WL E + + LP+ PP + D
Sbjct: 911 SKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQ 970
Query: 1320 KKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNH 1379
L +EALYNF FN VQT++F TLYH N L+ A GSGKT+ AEL++
Sbjct: 971 PLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRV 1030
Query: 1380 WRE-GRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLIL 1438
+ + +A+YI P K + E + +WK R G K+I +G++ D K +A++ LI+
Sbjct: 1031 FNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIE-LTGDVTPDMKSIAKADLIV 1089
Query: 1439 ATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNI 1498
TP +++ +SR W R +Q++ ++I D+IH +G E GP+ E+I++R FI++ EK +
Sbjct: 1090 TTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEE-RGPVLEVIVSRTNFISSHTEKPV 1148
Query: 1499 RIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIE----TSILVKSPTSNRM 1554
RIVGL T LANA+D +WL K+ +FNF R PL V I+ + + N+
Sbjct: 1149 RIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKP 1208
Query: 1555 ALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVAK--GIDLLRAEESSLHSY 1612
A I R SP + + +FV+ R + A EL+ + L +E + +
Sbjct: 1209 AFQAI-----RSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENI 1263
Query: 1613 LNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASRDCCFDAP-SSSF 1671
+ V+DSNLK L GIG+ + G+H DR V +L + +L+A+ + +
Sbjct: 1264 IATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHL 1323
Query: 1672 VFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCD 1731
V + T+Y++G+ RY+D+P+ +L+MMG A Q A ++ +K++YKKFL +
Sbjct: 1324 VIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYE 1383
Query: 1732 GLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADE 1791
P ESSL + D L E A T+ +KQD +D +T+TY +RR+ NPS+Y + DV+ D
Sbjct: 1384 PFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDS 1443
Query: 1792 ISSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISPNNACLISAIHAVSCLTICN 1851
++ +L+ L+E+++ ++ + I + GE N S I P I++ + + T+
Sbjct: 1444 VNKFLSHLIEKSLIELELSYCIEI-GEDNRS-------IEPLTYGRIASYYYLKHQTVKM 1495
Query: 1852 FSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLSSEFDPRSTTAK 1911
F + LP+R ++ +L P++ S+ S K
Sbjct: 1496 FKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIE-SNPHSFDSPHTK 1554
Query: 1912 VFVLLQAHFSGLHLPM-DLSLDLSEILSKAPSLAGTMVDILSMNGYL-NATTAMDLSQMI 1969
+LLQAH S LP D D +L +A + M+D+ + G+L +L QM+
Sbjct: 1555 AHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMV 1614
Query: 1970 VQGVWDTDSPLKQIPFFDTDILEKCK-------------NHNVETVYDVMALEDEEREDI 2016
+QG W DS L +P + L K ++E++ +++ +
Sbjct: 1615 IQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVF 1674
Query: 2017 ITLPENKLN-----KVAEFVNSYPNIELKYAL------------DMSAPMKPHDKK---- 2055
++ E++L+ + F++ P I + ++ ++S DK+
Sbjct: 1675 SSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDDNK 1734
Query: 2056 ----------MVTVTVSR------DEEPETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYA 2099
++ V++ R +PE+ V+ + P K E W++ +GE R+L A
Sbjct: 1735 WIKLHADQEYVLQVSLQRVHFGFHKGKPESCAVTPR-FPKSKDEGWFLILGEVDKRELIA 1793
Query: 2100 IRKIALTKMTQDYELEIEL-EDPGDHELTIWCVCDSYLDADKEVTFNVNI 2148
++++ + L E PG + T++ + D YL D++ +N+
Sbjct: 1794 LKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMSDCYLGLDQQYDIYLNV 1843
>At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 2137
Score = 977 bits (2525), Expect = 0.0
Identities = 627/1869 (33%), Positives = 990/1869 (52%), Gaps = 151/1869 (8%)
Query: 309 QEMANNVYDLLANDISEEELTQNLHDIFGPDAKQLIRLIVSNR----ETLYWGHNLQRS- 363
+E+A + L +D EE+ +L D+ G A + ++ ++ +R + ++ G + +S
Sbjct: 314 EELAMAICRFLDSDKPGEEIAGDLLDLVGDGAFETVQDLIMHRKEIVDAIHHGQMILKSD 373
Query: 364 -ANENIDEILGEMA-----QRNLSHLVEAYKAKPDSAKRK---LNSEPEVGTKKQKIEAE 414
A N + Q + +E + K + ++ L E E+ E
Sbjct: 374 KAASNTQSRMPTYGTQVTVQTESAKQIEKLRRKEEKKNKRNADLGLESEISEANFSSLLE 433
Query: 415 DEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPK--KVDDNFPLVQ 472
K A +DL S L+ ++LP+ + ++ YEE+ +PP ++ L++
Sbjct: 434 ASEKKTAFEDLIGSGEANSLA---LALPQGTVRKHLKGYEEVFIPPTPTAQMKPGEKLIE 490
Query: 473 IESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAM 532
I+ L +A++AF + SLNRIQS ++ T ++T+ N+L+CAPTGAGKTN+AM++VL +
Sbjct: 491 IKELDDFAQAAFHGYK--SLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEI 548
Query: 533 SHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQI 592
++R+ +FK+VY+AP+KAL E F RRL + V ELTGD L+K ++
Sbjct: 549 KQHFRD--GYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTEL 606
Query: 593 EETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDT- 651
EETQ++V TPEKWDVITRKS+D S LV+L+IIDEVHLL+D+RG VIE++VAR LR
Sbjct: 607 EETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVE 666
Query: 652 TAEIPTRLVALSATLPNYIDVAKFLHV-PDNGLFYFDSTFRPCPLAQQYCGITEKNALKK 710
+ + R+V LSATLP+Y+ VA+FL V D GLFYFDS++RP PLAQQY GITE N +
Sbjct: 667 STQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFAAR 726
Query: 711 KNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSL 770
+N+ CY K++++ K+GHQ +IFVHSRKDT++TA L+ + + F
Sbjct: 727 NELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQF 786
Query: 771 EILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGV 830
+++K + + ++ L GFGIHHAG+ + DR+L+E LF+DGLLKVLV TATLAWGV
Sbjct: 787 QLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGV 846
Query: 831 NLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYY 890
NLPAHTV+IKGT++Y + W L D++Q+ GRAGRP++D +GEGIIIT+ + YY
Sbjct: 847 NLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY 906
Query: 891 LAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQ 950
L +L QLPIESQ IS + DNLNAE+VLG VT++ EA WLGY+YLS+RMK +P Y +
Sbjct: 907 LRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGI- 965
Query: 951 GSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXX 1010
G ++D L R +V A L ++ +D S + TELGR
Sbjct: 966 GWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSV 1025
Query: 1011 AKYNRELTINSTLIDILRIFAMSEEFKNITVRQEEKTELEKLVER-CPIPIKEKATDSLA 1069
YN L + +I+ + A S EF+NI VR+EE+ ELE L CP+ +K ++
Sbjct: 1026 ETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKHG 1085
Query: 1070 KANILLQVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKC 1129
K +IL+Q+YIS+ ++ F+L +D YIS S R+ RALFE+CLRKGW +T +L CK
Sbjct: 1086 KISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCKA 1145
Query: 1130 VDSRMWPTNSPFRQFKR-CPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAF 1188
VD ++WP P RQF+R P + RR + D L E+G +R G+
Sbjct: 1146 VDRQLWPHQHPLRQFERDLPSD--RRDDL------DHLYEMEEKEIGALIRYNPGGR--- 1194
Query: 1189 DLLQRFPKIGIHCAMQPVTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGEQTIY 1248
L FP I + + P+T ++L+ +L + P +IW + + +L+EDT+ + IY
Sbjct: 1195 -HLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTENDY-IY 1252
Query: 1249 HETLH--VGRNAINSIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLP 1306
H L R A L F V + + PP Y+V +S+ WL+ E + + LP
Sbjct: 1253 HSDLFTLTKRMARGEPQKLSFTVPIFEPH-PPQYYVHAVSDSWLHAETYFTISFHNLALP 1311
Query: 1307 KPFPPAISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGS 1366
+ + D L +E+LY F FN +QT++F LYH N L+ A GS
Sbjct: 1312 EARTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPTGS 1371
Query: 1367 GKTIMAELSLLNHW-REGRGRAIYICPFKTKITELLKNWKKRFSHLAG--GKLINAFSGN 1423
GKTI AEL++L + + + +YI P K + E + +WKK HL GK + +G+
Sbjct: 1372 GKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKK---HLVAPLGKEMVEMTGD 1428
Query: 1424 LQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEII 1483
D L + +I++TP +++ +SR W R ++++ L+I D+IH +G + GP+ E +
Sbjct: 1429 YTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGAD-RGPILE-L 1486
Query: 1484 ITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIE-- 1541
++ L K++ + G+ LANA D +WLG + +FNF R P+ V I+
Sbjct: 1487 YHDTCNVSMVLVKSLYL--FGSALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGY 1544
Query: 1542 --TSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVA--K 1597
+ + N+ A I SP + + +FV+ R + A +L+ A +
Sbjct: 1545 PGKYYCPRMNSMNKPAYAAIC-----THSPTKPVLIFVSSRRQTRLTALDLIQFAASDEH 1599
Query: 1598 GIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKL---------- 1647
L E L L+++ D NL+ LQ GIG+ + G++ DR+ V +L
Sbjct: 1600 PRQFLSVSEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQAIS 1659
Query: 1648 -----------HEYKV-----------ISILVASRDCCFDAP-SSSFVFVTTTQYFEGRE 1684
H Y + +LV++ + + V + T+YF+G+
Sbjct: 1660 STYSLCCLYRIHGYTFTLRLMMESMLPLQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKT 1719
Query: 1685 NRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVI 1744
RY+D+P+ IL+MMG A Q A ++ +K +YKKFL + P ESSL +
Sbjct: 1720 KRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKLH 1779
Query: 1745 DLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADEISSYLTELVEEAV 1804
D E + T+ K+D + LT+TYL+RR+ ANP++YG++ + I SYL+ LV+
Sbjct: 1780 DHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETICSYLSRLVQTTF 1839
Query: 1805 TTMKETELISVEGEANDSTEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSG 1864
++++ + V E+ + P I++ + + +T+ F +
Sbjct: 1840 EDLEDSGCLKVN----------EDSVEPTMLGTIASQYYLCYMTVSMFGSNIGPDTSLEA 1889
Query: 1865 XXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLSSEFDPRSTTAKVFVLLQAHFSGLH 1924
+ LP+R ++ + L D +
Sbjct: 1890 FLHILAGASEYDELPVRHNEENYNKTLSD----------------------------RVR 1921
Query: 1925 LPMDLSLDLSEILSKAPSLAGTMVDILSMNGYLNAT-TAMDLSQMIVQGVW-DTDSPLKQ 1982
P+D + L + KA L M+DI + +G+L+++ T M L QM++QG+W D DS L
Sbjct: 1922 YPVD-NNHLDDPHVKANLLFQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSDQDSSLWM 1980
Query: 1983 IPFFDTDILEKCKNHNVETVYDVMALEDEEREDIITLPEN-KLNKVAEFVNSYPNIELKY 2041
IP + +L + T++ ++ L RE + ++ EN +++++ + +P I++
Sbjct: 1981 IPCMNDLLLGSLTARGIHTLHQLLNL---PRETLQSVTENFPASRLSQDLQRFPRIQMNV 2037
Query: 2042 ALDMSAPMKPHDKKMVTVTVSRDEEPETLNVSSKSL----PHEKTEAWWIFIGEKSSRQL 2097
L K D K T+ E + SS++L P K EAWW+ +G+ S+ +L
Sbjct: 2038 RLQ----KKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDTSTSEL 2093
Query: 2098 YAIRKIALT 2106
+A+++++ T
Sbjct: 2094 FAVKRVSFT 2102
Score = 189 bits (479), Expect = 5e-47
Identities = 195/885 (22%), Positives = 391/885 (44%), Gaps = 92/885 (10%)
Query: 1302 EIKLPKPFPPAISVSDSIKKSTKELQIDEFE-----ALYNFHSFNKVQTEVFDTLYHETE 1356
E+ +P P P A +K K ++I E + A + + S N++Q+ +F T+YH E
Sbjct: 471 EVFIP-PTPTA-----QMKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNE 524
Query: 1357 NALICATKGSGKTIMAELSLLN----HWREG-----RGRAIYICPFKTKITELLKNWKKR 1407
N L+CA G+GKT +A +S+L+ H+R+G + +Y+ P K E+ + +R
Sbjct: 525 NILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRR 584
Query: 1408 FSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDD 1467
+ L ++ +G++Q + +L ++ +I+ TP +++ ++R+ + ++L+I D+
Sbjct: 585 LAPL--NMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDE 642
Query: 1468 IHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSS-IFN 1526
+H + N+ G + E ++ R + + IRIVGL L + ++L + +F
Sbjct: 643 VHLL-NDDRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFY 701
Query: 1527 FTALERQTPLTVDI----ETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYE 1582
F + R PL E + ++ N + ++V+S + +FV R +
Sbjct: 702 FDSSYRPVPLAQQYIGITEHNFAARNELLNEICYKKVVDSIKQ----GHQAMIFVHSRKD 757
Query: 1583 CVSFATELVGLAVA-KGIDLLRAEESSLHSYLNK----VQDSNLKTLLQSGIGILYQGMH 1637
A +LV LA + +DL E + K ++ +L ++G GI + GM
Sbjct: 758 TSKTAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGML 817
Query: 1638 YSDRNVVRKLHEYKVISILVASRDCCF--DAPSSSFVFVTTTQYFEGRENRYIDYPVNTI 1695
SDR + +L ++ +LV + + + P+ + V + TQ ++ + + D + +
Sbjct: 818 RSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVV-IKGTQLYDAKAGGWKDLGMLDV 876
Query: 1696 LEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQT 1755
+++ G A + +IT+ + YY + L LP ES + D L E T
Sbjct: 877 MQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGT 936
Query: 1756 LETKQDCIDLLTYTYLYRRIHANPSFYGI--QDVTAD-EISSYLTELVEEAVTTMKETEL 1812
+ ++ L YTYL R+ NP YGI +++ AD +S LV +A ++ + ++
Sbjct: 937 VTNVKEACAWLGYTYLSIRMKLNPLAYGIGWEEIIADPSLSLKQRALVADAARSLDKAKM 996
Query: 1813 ISVEGEAND--STEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXX 1870
+ + ++ + TE+ +++ + ++ ++ R + S
Sbjct: 997 MRFDEKSGNFYCTELGR----------VASHFYIQYSSVETYNEMLKRHMNESEIINMVA 1046
Query: 1871 XXXXFKTLPLR---LHDIKPLRKLYDISPLKLSSEFDPRSTTAKVFVLLQAHFS-GLHLP 1926
F+ + +R H+++ L + PL++ P + K+ +L+Q + S G
Sbjct: 1047 HSSEFENIVVREEEQHELETLAR--SCCPLEVKG--GPSNKHGKISILIQLYISRGSIDA 1102
Query: 1927 MDLSLDLSEILSKAPSLAGTMVDILSMNGYLNATTAM-DLSQMIVQGVWDTDSPLKQIPF 1985
L D S I + + + +I G+ T M + + + + +W PL+Q
Sbjct: 1103 FSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCKAVDRQLWPHQHPLRQ--- 1159
Query: 1986 FDTDILEKCKNHNVETVYDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIELKYALDM 2045
F+ D L + +++ +Y+ +E++E +I + N + +P+I+L
Sbjct: 1160 FERD-LPSDRRDDLDHLYE---MEEKEIGALI-----RYNPGGRHLGYFPSIQL------ 1204
Query: 2046 SAPMKPHDKKMVTVTVSRDEEPETLNVSSKSLPHEKTEAWWIFIGEKSSRQLYAIRKIAL 2105
+A + P +T TV + + T N K H WWI I + + +Y L
Sbjct: 1205 AATVSP-----ITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTENDYIYHSDLFTL 1259
Query: 2106 TKM-----TQDYELEIELEDPGDHELTIWCVCDSYLDADKEVTFN 2145
TK Q + + +P + + V DS+L A+ T +
Sbjct: 1260 TKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTIS 1304
>7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1809
Score = 916 bits (2367), Expect = 0.0
Identities = 583/1787 (32%), Positives = 942/1787 (52%), Gaps = 92/1787 (5%)
Query: 425 LKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVP----PPKKVDDNFPLVQIESLPKWA 480
L Q+ F+ +I+LP+N+ + +EE+ +P PP V + VQIE L
Sbjct: 46 LLAKQHAGFIGGSRITLPDNAQRIDNKQWEEVKIPASEPPPLSVGNK--RVQIEELDDVG 103
Query: 481 RSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREER 540
R AF + LNRIQS V+P A++++ N+L+CAPTGAGKTNVAML+++ + + E+
Sbjct: 104 RLAFANCK--ELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHL--EQ 159
Query: 541 NAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVA 600
+ +FK+VYIAP+KAL E V F +RL + V ELTGD L+K ++ TQ+LV
Sbjct: 160 GVINRDEFKIVYIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVT 219
Query: 601 TPEKWDVITRK-STDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDT-TAEIPTR 658
TPEKWDV+TRK S D + LV L+IIDEVHLLH ERGPV+E++VAR LR +++ R
Sbjct: 220 TPEKWDVVTRKGSGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIR 279
Query: 659 LVALSATLPNYIDVAKFLHV-PDNGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQA 717
+V LSATLPNYIDVA FL V P GLFYFDS FRP PL + GI L++ M+Q
Sbjct: 280 IVGLSATLPNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQC 339
Query: 718 CYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISA-FQGTDKGSLEILKTE 776
CY K +E +EGHQ+++FVH+R T RTA +I++L ++ SA F D + +
Sbjct: 340 CYQKCVEMVQEGHQIMVFVHARNATVRTAN-VIRELAQQNNTSALFLPKDSAAHGLATRS 398
Query: 777 SSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHT 836
+ ++ L +L G +HHAG+ + DR + E F +G + VLV TATLAWGVNLPAH
Sbjct: 399 IQRSRNKQLVELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHA 458
Query: 837 VIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQ 896
VII+GT++Y + +V L D+LQ+ GRAGRP++D +G G IIT+ + +YL++L
Sbjct: 459 VIIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTN 518
Query: 897 QLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDM 956
Q PIES ++ + DNLNAEI LG +T++DEA+ WL Y+YL VRM+ +PH+Y ++ S +
Sbjct: 519 QFPIESNFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELE- 577
Query: 957 SDAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRE 1016
D L R ++ +A L ++ ++ + + T+LGR +N
Sbjct: 578 KDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNEL 637
Query: 1017 LTINSTLIDILRIFAMSEEFKNITVRQEEKTELEKLVER-CPIPIKEKATDSLAKANILL 1075
+ T +IL + + ++EF+ + VR +E EL++L C I + + K NIL+
Sbjct: 638 MKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKIKPYGGSENVHGKVNILI 697
Query: 1076 QVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMW 1135
Q Y+S ++ F+L++DM YI+ + GR+ RALF + LR+ L+ +L +CK + R W
Sbjct: 698 QTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNMLQLCKMFERRQW 757
Query: 1136 PTNSPFRQFKRCPQEIIRRAEASGLPWNDFLLLKNAH-EVGEALRSPKNGKVAFDLLQRF 1194
+ +QF E I + E GL + + L H E+ E LRS +
Sbjct: 758 DFDCHLKQFPTINAETIDKLERRGL--SVYRLRDMEHRELKEWLRSNTYADLVIRSAHEL 815
Query: 1195 PKIGIHCAMQPVTNSLLRFELELQPTWIW-DLDSSSYSETFLVLVEDTDGEQTIYHETLH 1253
P + + ++QP+T ++LR ++++ P++ W D ++F + +ED + + E
Sbjct: 816 PLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELFQ 875
Query: 1254 VGRNAINSIVYLDFVVFLKQK-MLPPNYFVSVISEKWLNCEYKIPVILSEIKLPKPFPPA 1312
V R + S V+ + K LPP Y++ V S+ WL IP+ + LP+ PP
Sbjct: 876 VTRKLVMSGQSQQLVMTIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHPPL 935
Query: 1313 ISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSGKTIMA 1372
+ L+ +E+LY F FN +QT++F LYH N L+ A GSGKTI+A
Sbjct: 936 TELLPLRPLPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVA 995
Query: 1373 ELSLLNHWREG-RGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQL 1431
E+++ + + + +YI P K + E + +W++RF + G + +G++ D + +
Sbjct: 996 EIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAI 1055
Query: 1432 AQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIA 1491
+S LI+ TP +++ +SR W R+ +Q + LI+ D+IH +G E GP+ E+I++R FI+
Sbjct: 1056 RESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLG-EDRGPVIEVIVSRTNFIS 1114
Query: 1492 TQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIE----TSILVK 1547
+ + IRIVGL T LANA+D WLG K ++NF R PL V I +
Sbjct: 1115 SHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPR 1174
Query: 1548 SPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVAKG--IDLLRAE 1605
T NR I R SP E VFV+ R + A +L+ + L
Sbjct: 1175 MATMNRPTFQAI-----RTYSPCEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIP 1229
Query: 1606 ESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASRDCCFD 1665
E + L +++ NLK L GIG+ + G+ DR V +L + I ILVA+ +
Sbjct: 1230 EDEIELILQNIREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWG 1289
Query: 1666 AP-SSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEY 1724
+ V + T+YF+G+ +Y+D P+ +L+MMG A + A ++ ++K +
Sbjct: 1290 VNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNF 1349
Query: 1725 YKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGI 1784
YKKFL D P ESSL + + + E T+++KQ +D LT+TY +RR+ NPS+Y +
Sbjct: 1350 YKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQL 1409
Query: 1785 QDVTADEISSYLTELVEEAVTTMKETE-LISVEGEANDSTEIAEEVISPNNACLISAIHA 1843
QD+ + ++++++ LVE V + L+ +G + P IS+ +
Sbjct: 1410 QDIEPENVNNFMSNLVERVVYELSAAACLVERDG-----------CLIPTFLGRISSYYY 1458
Query: 1844 VSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLK-LSSE 1902
+S T+ +F + F LP+R ++ K ++ ++S + SS
Sbjct: 1459 LSYRTMKHFLEDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSS 1518
Query: 1903 FDPRSTTAKVFVLLQAHFSGLHLP-MDLSLDLSEILSKAPSLAGTMVDILSMNGYLNAT- 1960
+D S+ K F+LLQAHF+ LP D D L A + MVD + G+L+ T
Sbjct: 1519 WD--SSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTL 1576
Query: 1961 TAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKN--HNVETVYDVMALED--EEREDI 2016
L Q ++Q W S +P + D L+ N H+ + L++ ++ ++
Sbjct: 1577 VVQQLMQSVIQARWFDGSEFLTLPGVNEDNLDAFLNIPHDDYDYLTLPVLKELCKQEYEV 1636
Query: 2017 ITLP------ENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTVSRDEE---- 2066
+ P E+++ K+ + + P I ++ ++ + K+ ++++ E
Sbjct: 1637 LAKPLRDAFEEHEIEKMYKVIQDLPEIAIQIFVEGRHMENEYAKRPLSLSDDTRGEWMSL 1696
Query: 2067 -----------PETLNVSSK-------------SLPHEKTEAWWIFIGEKSSRQLYAIRK 2102
+ LNVS + P K EAW++ +G +++ +L A+++
Sbjct: 1697 HANEDYVLIVNLQRLNVSGQRRGGGQSYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKR 1756
Query: 2103 IALTKMTQDYELEIELEDP-GDHELTIWCVCDSYLDADKEVTFNVNI 2148
+++ + + G +LT++ + D + D++ I
Sbjct: 1757 VSIRGQRCTNRISFQATPRLGRLQLTLYLMSDCLMGFDQQYDLQFEI 1803
>YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1967
Score = 911 bits (2355), Expect = 0.0
Identities = 608/1936 (31%), Positives = 1005/1936 (51%), Gaps = 135/1936 (6%)
Query: 260 RSDIMNNSESLQIQSAAVMEEIID-IKDIDGFYLQRKIRKQLKNIEETKVQEMANNVYDL 318
R+D + E + S A ++ IID K + + +KI K + E T +
Sbjct: 64 RNDWDDIFEEFKDISFAQLQSIIDSYKTKNAVAVYKKIGKLINEAETTLSSNVLLETVLQ 123
Query: 319 LANDISEEELTQNLHDIFGPDAKQLIRLIVSNRETLYWGHN-----LQRSANENIDEILG 373
+ ++EL + L D G L+ L++ +R + L ++A + E L
Sbjct: 124 MVYKHQKQELEKELLDFLGTGNIDLVSLLLQHRRMIVATPIETTILLIKNAVNSTPEFLT 183
Query: 374 EMAQRNLSHLVEAYKAKPDSAKRKLNSEPEVGTKKQKIEAEDEPKVIALDDLKLSQNTKF 433
+ RN + ++ D+ RKLN ++ + A+
Sbjct: 184 QQDIRN-----QVLESAEDAKNRKLNPATKIIKYPHVFRKYEAGSTTAMA---------- 228
Query: 434 LSDVKISLPENSFKRVKDSYEEIHVPPPKKVDDN----FPLVQIESLPKWARSAFPTSET 489
+ K +LP + + +++EEI +P + + L++I L + ++ FP
Sbjct: 229 FAGQKFTLPVGTTRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTVFPYE-- 286
Query: 490 TSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHY-YREERNAFDLK-- 546
+LN+IQS VYP A+ T+ N+L+CAPTGAGKT++A+LT++ + + N D++
Sbjct: 287 -TLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYD 345
Query: 547 KFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWD 606
FKV+Y+APLKAL E V +F ++L F ++V ELTGD L+K +I TQ++V TPEKWD
Sbjct: 346 DFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWD 405
Query: 607 VITRKST-DTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDT-TAEIPTRLVALSA 664
V+TRK+ D V+L+IIDEVHLLH++RGPVIE++VAR LR +++ R++ LSA
Sbjct: 406 VVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGPVIETLVARTLRQVESSQSMIRIIGLSA 465
Query: 665 TLPNYIDVAKFLHVPDN-GLFYFDSTFRPCPLAQQYCGITEK-NALKKKNAMNQACYDKL 722
TLPN++DVA FL V G+FYFD +FRP PL QQ G K + + K +++ YDKL
Sbjct: 466 TLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKL 525
Query: 723 LEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGT----DKGSLEILKTESS 778
E + G+QV++FVHSRK+T ++AR I+ + ++ F DK S ++K
Sbjct: 526 SEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKNR-- 583
Query: 779 NATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVI 838
D+ + ++ +GFGIHHAG+ + DR+L+E +F DG +KVL TATLAWGVNLPA VI
Sbjct: 584 ---DKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVI 640
Query: 839 IKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRY-DVNGEGIIITNQSDVRYYLAVLNQQ 897
IKGT++Y +K ++ L D++Q+ GR GRP + NG GI+ T+ + +Y++++ QQ
Sbjct: 641 IKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQ 700
Query: 898 LPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMS 957
PIES+ SK+VDNLNAEI LG+VT++DEA+ WLGY+Y+ VRM+++P Y + +
Sbjct: 701 HPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEE-IAN 759
Query: 958 DAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNREL 1017
D +L R ++ A L ++ +D +S +LGR +N+
Sbjct: 760 DPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMC 819
Query: 1018 TINSTLIDILRIFAMSEEFKNITVRQEEKTELEKLV-ERCPIPIKEKATDSLAKANILLQ 1076
+T D+L + +MS EF I R+EE EL++L E I + KAN+LLQ
Sbjct: 820 DPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQ 879
Query: 1077 VYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWP 1136
YIS+ R+ AL++D Y++Q++ R+ RALF + + + W + + ++L ICK ++ R+W
Sbjct: 880 AYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWA 939
Query: 1137 TNSPFRQFKRCPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAFDLLQRFPK 1196
+ P QF P+ IIRR + P + LL A E+GE + + K G + +L RFPK
Sbjct: 940 FDHPLCQFD-LPENIIRRIRDT-KPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPK 997
Query: 1197 IGIHCAMQPVTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGEQTIYHETLHVGR 1256
I I + P+T +++R + L P ++WD ++ F V VE++D Q ++ E + R
Sbjct: 998 INIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNR 1057
Query: 1257 NAINSIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLPKPFPPAISVS 1316
+N+ +DF++ L LPP V V+S+ W+ CE + + P +
Sbjct: 1058 RQLNNQHEMDFMIPLSDP-LPPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLL 1116
Query: 1317 DSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSL 1376
T LQ E++Y F FN +QT F TLY+ ENA + + GSGKTI+AEL++
Sbjct: 1117 KLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAI 1176
Query: 1377 LNHWREGRGRAI-YICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSH 1435
+ ++ G+ I YI P K + E + +W+K+ + + G K++ +G+ D K + +
Sbjct: 1177 WHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVE-LTGDSLPDPKDVHDAT 1235
Query: 1436 LILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLE 1495
+++ TP +F+ +SR W RK +Q + LII D+IH + ++ GP+ E+I++RM +I++Q +
Sbjct: 1236 IVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASD-RGPILEMIVSRMNYISSQTK 1294
Query: 1496 KNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIETSILVKSPTSNRMA 1555
+ +R++G+ T ++NA D WLG K ++NF + R PL + I+ + +A
Sbjct: 1295 QPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYID-------GFPDNLA 1347
Query: 1556 LTEIVESSNRVA-------SPDETITVFVTDRYECVSFATELVGLAVAKGID------LL 1602
++++ N+ SPD+ +FV R + A +L+ L G++ L
Sbjct: 1348 FCPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLC---GMEDNPRRFLN 1404
Query: 1603 RAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASRDC 1662
+E L YL++V D LK LQ GIG+ + G+ DR++ +L + I IL+A+
Sbjct: 1405 IDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTL 1464
Query: 1663 CFDAP-SSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQR 1721
+ + V + TQ+F+ + Y D + IL+MMG A + A + T +
Sbjct: 1465 AWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESK 1524
Query: 1722 KEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSF 1781
K +YK FL G P ESSL + D L E + ++ KQ+ +D L++T+L+RR H NP++
Sbjct: 1525 KMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTY 1584
Query: 1782 YGIQDVTADE-ISSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISPNNACLISA 1840
YGI+D T+ +S +L+ L++ + ++E++ + + G+ +T IS+
Sbjct: 1585 YGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVATPFLS----------ISS 1634
Query: 1841 IHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLS 1900
+ +S LTI + + LP+R +I ++ S +
Sbjct: 1635 YYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVE 1694
Query: 1901 SEF---------DPRSTTAKVFVLLQAHFSGLHLPM-DLSLDLSEILSKAPSLAGTMVDI 1950
S F DP K F+LLQAH S + LP+ D D +L ++ + +D+
Sbjct: 1695 STFTDEFELPMWDPH---VKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDV 1751
Query: 1951 LSMNGYLNAT-TAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNHNVETVYDVMALE 2009
S GY + T + + Q I QG W D P+ +P L + K++ +
Sbjct: 1752 ASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQ---LRRIKDYTFSEQGFIEMTP 1808
Query: 2010 DEEREDIITLPENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTV---------- 2059
++++ ++TL E + +N + +L + + S K K+ V+V
Sbjct: 1809 QQKKKKLLTLEEIGRFGYKKLLNVFD--QLTFGMTESEDTK---KRFVSVCQRLPVLEGM 1863
Query: 2060 TVSRDEEPETLNVSSKSLPHEKTEAW--------------WIFIGEKSSRQLYAIRKIAL 2105
E E L SK L + + W IG K +L I++
Sbjct: 1864 KFEEQENNEVLTFYSKHLSSKHNNGFEVYCDKFPKIQKELWFLIGHKGD-ELLMIKRCQP 1922
Query: 2106 TKMTQDYELEIELEDP 2121
+M ++ + +L P
Sbjct: 1923 KQMNKEVIIHCDLFIP 1938
>SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1935
Score = 900 bits (2327), Expect = 0.0
Identities = 587/1862 (31%), Positives = 958/1862 (50%), Gaps = 104/1862 (5%)
Query: 328 LTQNLHDIFGPDAKQLIRLIVSNRETLYWGHNLQRSANENIDEILGEMAQRNLSH----- 382
+ ++L ++ G D LI IV+N L ++ N+N I +++ S
Sbjct: 112 IQEDLLNLVGLDHIDLISDIVANSSNL-----IEEYMNQNDTSIAAQLSDGYTSEAGSSA 166
Query: 383 -----LVEAYKAKPDSAKRKLNSEPEVGTKKQKIEAEDEPKVIALDDLKLSQNTKFLSDV 437
L+++ K++P R ++ + T +Q E E P V D +L NT +
Sbjct: 167 THGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFEVEKYPHVYG--DKRLG-NTISVIGK 223
Query: 438 KISLPENSFKRVKDSYEEIHVPPPKKVDD--NFPLVQIESLPKWARSAFPTSETTSLNRI 495
K +LP S + YEEI VP ++ L++I S+ R F + +T LNRI
Sbjct: 224 KFALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQT--LNRI 281
Query: 496 QSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYR-----EERNAFDLKK--F 548
QS VYP A+ T+ N+L+CAPTGAGKT+VA+L +L+ +S+Y +E D+ + F
Sbjct: 282 QSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDF 341
Query: 549 KVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVI 608
K+VYIAP+KAL E V + +RL G+K ELTGD L+K +I ETQ+LV TPEKWDV+
Sbjct: 342 KIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVV 401
Query: 609 TRKST-DTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDT-TAEIPTRLVALSATL 666
TRKS DT + VRL+IIDEVH+LHDERG VIES+VAR R T++ R+V LSATL
Sbjct: 402 TRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATL 461
Query: 667 PNYIDVAKFLHVPD-NGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEA 725
PNY+DVA FL V GLFYF S FRPCP+ Q + G + N +++AC+DK+L+
Sbjct: 462 PNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSN-IDEACFDKVLKL 520
Query: 726 AKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSL 785
+EGHQV+IFVHSRK+T +A+ L ++ +E + + + + + S + ++ L
Sbjct: 521 IQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKEL 580
Query: 786 SDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMY 845
+L Y GIH+AG+ + DR L+E LF+ G+LK+L TATLAWGVNLPA+ V+IKGT++Y
Sbjct: 581 KELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLY 640
Query: 846 SPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMI 905
P+K +V L D+LQ+ GRAGRP+++ + IIT + +Y++V+ QQ PIES+
Sbjct: 641 DPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFT 700
Query: 906 SKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVN 965
++VDNLNAE+ LG VT++DEAV+WLGY+YL +RM+++P +Y + + D L
Sbjct: 701 DRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGI-AYDELVEDPLLGSKR 759
Query: 966 RNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLID 1025
R +V A L +N ++ Y+ + + P +LGR + N L + D
Sbjct: 760 RELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEAD 819
Query: 1026 ILRIFAMSEEFKNITVRQEEKTELEKLVER-CPIPIKEKATDSLAKANILLQVYISKLRL 1084
I+ + + EF I R+ E ELE L+E P +++ +++ K N++LQ YIS+ +
Sbjct: 820 IIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHV 879
Query: 1085 EGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFRQF 1144
E F L +D Y++Q+AGR+ RALFE+ + + W +L++ K +D R W P QF
Sbjct: 880 EDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQF 938
Query: 1145 KRCPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQ 1204
++ G + L + E+G+ + + K G + + P + I+ +
Sbjct: 939 DLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLL 998
Query: 1205 PVTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGEQTIYHETLHVGRNAINSIVY 1264
P+T ++LR L + P + WD+ S+ F + VED++G + ++HE L + + +++
Sbjct: 999 PLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHL 1058
Query: 1265 LDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLPKPFPPAISVSDSIKKSTK 1324
L F + + LP ++ +S+KWL E PV LS + P + D
Sbjct: 1059 LSFTIPVSNP-LPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLPIT 1117
Query: 1325 ELQIDEFEAL--YNFHSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNHWRE 1382
L E + F FN VQT+ F T+YH N + A GSGKT+ AEL+ WR
Sbjct: 1118 ALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELAT---WRA 1174
Query: 1383 ----GRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLIL 1438
+ + +YI P K + E +K+W R G +I +G+ D K + +++I+
Sbjct: 1175 LHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIE-LTGDTNPDVKAVTNANIII 1233
Query: 1439 ATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNI 1498
TP +++ ++R W RK +Q + LII D+IH +G++ GP+ E+I++RM ++A+Q K +
Sbjct: 1234 TTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSD-RGPVLEMIVSRMNYVASQTNKKV 1292
Query: 1499 RIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIETSILVKSPTSNRMALTE 1558
R++GL T +ANA D WL + +FNF R PL + I+ ++ M++ +
Sbjct: 1293 RVLGLSTAVANANDLANWLNI-RDGLFNFRHSVRPVPLEIYID-GFPGRAYCPRMMSMNK 1350
Query: 1559 IVESSNRVASPDETITVFVTDRYECVSFATELVGLAVAKGID-----LLRAEESSLHSYL 1613
+ + SP + + +FV+ R + A +L+ G++ L +E L +
Sbjct: 1351 PAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFC---GLEDNPRRFLYMDEEELEMIV 1407
Query: 1614 NKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASRDCCFDAPS-SSFV 1672
++V+D +LK L GI + + G+ +DR + +L + IL+A+ + + + V
Sbjct: 1408 SEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLV 1467
Query: 1673 FVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDG 1732
V T+Y++ + Y D + +L+M+G A A++ +K +YK FL G
Sbjct: 1468 IVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSG 1527
Query: 1733 LPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADEI 1792
P ES L + + L E A T++ Q +D LT TY YRR+H NP +YG I
Sbjct: 1528 FPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGDDQKSI 1587
Query: 1793 SSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISPNNACLISAIHAVSCLTICNF 1852
+YL++LV A ++++ I + EE +P I + + + TI NF
Sbjct: 1588 DTYLSKLVVTAFNELEKSACI---------YRVNEETYAPTTLGRIVSYYYLFHTTIRNF 1638
Query: 1853 SRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISPLKLSS---EFDPRSTT 1909
+ + + F L +R ++ L + LK S+
Sbjct: 1639 VQKITENAEFDLALQLLAEASEFDDLAIRHNE--DLINIEINKSLKYSAACLNLPMVDAH 1696
Query: 1910 AKVFVLLQAHFSGLHLPM-DLSLDLSEILSKAPSLAGTMVDILSMNGYLNATTA-MDLSQ 1967
K F+L QAH + L LP+ D D S +L + + + +D+ + GY + + L Q
Sbjct: 1697 VKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQ 1756
Query: 1968 MIVQGVWDTDSPLKQIPFFDT-------DILEKCKNHNVETVYDVMALEDEEREDIITLP 2020
+ Q + ++ +P + D L K + + +Y M D DI +L
Sbjct: 1757 CLKQACYPSEIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQ-MLCNDPNVFDIESLV 1815
Query: 2021 ENKLNKVAEFVNSYPNIELKYALDMSAPMKPHDKKMVTVTVSRDEEPETLNVSSKSLPHE 2080
+ + SYP + ++ + S DK ++ + + + P
Sbjct: 1816 NSLI--------SYPKMNIEVSQSSS------DKLLLYLRRLNQPLNPDFYIFAPLFPKP 1861
Query: 2081 KTEAWWIFIGEKSSRQLYAIRKIALTKMTQDYELEIELEDPGD-------HELTIWCVCD 2133
++E +++ I + +++L+AIR+ + D + + L D + + VCD
Sbjct: 1862 QSEGFFVLIIDSETQELFAIRRASFAGRRNDDSIRLSLRISMDIPPTCRNRNVKVMVVCD 1921
Query: 2134 SY 2135
Y
Sbjct: 1922 GY 1923
>CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1798
Score = 878 bits (2269), Expect = 0.0
Identities = 570/1786 (31%), Positives = 943/1786 (51%), Gaps = 95/1786 (5%)
Query: 434 LSDVKISLPENSFKRVKDSYEEIHVPPPKKVD-DNFPLVQIESLPKWARSAFPTSETTSL 492
++ +K +LPE S + ++E ++VPP K D + V ++ + + + F E L
Sbjct: 36 INGMKFALPEGSKRDTFKTHESVYVPPSNKGDIEKIQHVYVKDMDELGQKGFKGFE--KL 93
Query: 493 NRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVY 552
N IQS V+ A+ T N+L+CAPTGAGKTN+AMLT+L + H ++ R FK++Y
Sbjct: 94 NVIQSIVFEQAYKTKENLLICAPTGAGKTNIAMLTILNTI-HEHQNSRGDIMKDDFKIIY 152
Query: 553 IAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKS 612
IAP+KAL E F +RL G+KV ELTGD+ LS+ ++ +TQ+LV TPEKWDVITRKS
Sbjct: 153 IAPMKALATEMTESFGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKS 212
Query: 613 T-DTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDTT-AEIPTRLVALSATLPNYI 670
T D S +VRL+IIDEVHLLHDERGPVIE++VAR LR ++ R+V LSATLPN+I
Sbjct: 213 TSDNSLINVVRLLIIDEVHLLHDERGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFI 272
Query: 671 DVAKFLHV-PDNGLFYFDSTFRPCPLAQQYCGITEKNALKKK-NAMNQACYDKLLEAAKE 728
DVA+FL V P GLF+FD FRP PL Q++ G + + M+ CYD++++ K
Sbjct: 273 DVARFLRVNPYKGLFFFDGRFRPVPLTQKFIGTRKAGNFRDNLTLMDNVCYDEVVDFVKR 332
Query: 729 GHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRS---L 785
GHQV++FVH+R TA+ + ++ F D+ S + ++ + + R+ +
Sbjct: 333 GHQVLVFVHTRNGTAKLGEAFCARASVLGQMDLFLPKDRASSKYIQADKAINICRNRAQI 392
Query: 786 SDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMY 845
S L G GIHHAGL + DR L E FA+G + VL TATLAWGVNLPAH V+IKGT+++
Sbjct: 393 SPLFQRGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVF 452
Query: 846 SPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMI 905
EK + L D+ Q+ GRAGRP+++ G GIIIT + + YL +L Q PIESQ
Sbjct: 453 DAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQFY 512
Query: 906 SKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVN 965
+++ DNLNAE+ LG V+++DE V WL Y+Y+ R ++P Y + ++ + D L
Sbjct: 513 ARLHDNLNAEVALGTVSTVDEGVEWLTYTYMYTRALKNPMAYGIAYNAIE-RDPNLRDHF 571
Query: 966 RNIVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNR-------ELT 1018
N++ A L N ++ +D ++ + T+LGR N +T
Sbjct: 572 GNVIREAAMQLDQNKMIRFDMATEYLNSTDLGRIASNFYVKYETIQLLNEAEKGVGLPVT 631
Query: 1019 INSTLID--ILRIFAMSEEFKNITVRQEEKTELEKLVE-RCPIPIKEKATDSLA-KANIL 1074
S + D ++ + +MS EF N+ R+EE +LE+L+ C + ++ S+A K N+L
Sbjct: 632 FTSFMPDDMVIGLISMSTEFANLKCREEEIGDLEELMSYGCMMNVRGGGLASVAGKVNVL 691
Query: 1075 LQVYISKLRLEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRM 1134
LQ IS+ AL ++ +Y+ Q+AGRL RA+FEM L+ GW + L I KCV+ +M
Sbjct: 692 LQSLISRTSTRNSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQM 751
Query: 1135 WPTNSPFRQFKR---CPQEIIRRAEASGLPWNDFLLLKNAHEVGEALRSPKNGKVAFDLL 1191
W RQF + P I + E +D L L +A ++G +G + L
Sbjct: 752 WMNQCALRQFIQIINIPITWIEKIERKKARESDLLEL-SAKDLGYMFSC--DGDRLYTYL 808
Query: 1192 QRFPKIGIHCAMQPVTNSLLRFELELQPTWIWD--LDSSSYSETFLVLVEDTDGEQTIYH 1249
+ P++ + +P+T ++++ E+ L PT+IW+ + S ++F +++E+ + I+
Sbjct: 809 RYLPRMDVQAKFKPITYTIVQVEVTLTPTFIWNDQIHGKSGQQSFYLVLENLNENLIIHQ 868
Query: 1250 ETLHVGRNAIN--SIVYLDFVVFLKQKMLPPNYFVSVISEKWLNCEYKIPVILSEIKLPK 1307
E + +G+ +N L F + + L N+ + + SE ++ + +P+ L LPK
Sbjct: 869 ERIGIGKMKVNRQETQNLVFTIPIVDCQLTNNFQLRLASEYFVTDDVVVPMSLHNCILPK 928
Query: 1308 PFPPAISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSG 1367
F + D K L+ +FEA+YNF FN +Q +VF LY ++ALI A GSG
Sbjct: 929 SFKSHTDLLDLEPLPIKTLKNSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSG 988
Query: 1368 KTIMAELSLLNHWREGRG-RAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQH 1426
KT+ AEL++ ++ G + +YI P K+ + E + +WKK+F G +++ SG++
Sbjct: 989 KTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEV-SGDVTP 1047
Query: 1427 DQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITR 1486
D ++LA S +++ TP +++ +SR W R+ ++R+ LI+ D++H +G + G + E I++R
Sbjct: 1048 DPEELAASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVD-RGAVLEAIVSR 1106
Query: 1487 MIFIATQ---LEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDIE-- 1541
+ I + E+ +R++GL T LANA D EWLG + +NF R P++V I+
Sbjct: 1107 LKMITRRSHVTEEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVPISVHIQGF 1166
Query: 1542 --TSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVA--K 1597
+ N+ A I+ SP + + +FV+ R + A V L +A
Sbjct: 1167 PGQHYCPRMGLMNKPAYKAIL-----TYSPRKPVLIFVSSRRQTRLTALAFVNLLIADHN 1221
Query: 1598 GIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILV 1657
L + L + ++D NLK L GIG+ + G+ +R +V +L K I +L+
Sbjct: 1222 PKQWLNMDMLELEDLMAAIKDENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLI 1281
Query: 1658 ASRDCCFDAP-SSSFVFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLI 1716
A+ + + V V T+YF+G++ +Y+D+PV +L+MMG A A A +
Sbjct: 1282 ATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIY 1341
Query: 1717 TTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIH 1776
+K +YKKFL + P ESSL + + + E + T+++KQ ++ L+ TYLYRR+
Sbjct: 1342 VQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLF 1401
Query: 1777 ANPSFYGIQDVTADEISSYLTELVEEAVTTMKETELISVEGEANDSTEIAEEVISPNNAC 1836
ANP++YG+++ + + + ++T++V+++V + +E I V+ E ++VI P
Sbjct: 1402 ANPNYYGLEEDSEEAMLKFITKIVDDSVAELLASECIHVDSE--------QDVIKPTPCG 1453
Query: 1837 LISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKTLPLRLHDIKPLRKLYDISP 1896
I++++ + T+ ++ + + +P+R ++ +L
Sbjct: 1454 RIASVYYLQHETVRFLVKSLHSGCSVENMLKILTDVPEYAEIPVRHNEDLINTELQKKLR 1513
Query: 1897 LKLSSEFDPRSTTAKVFVLLQAHFSGLHLPMDLSLDLSEILSKAPSLAGTMVDILSMNGY 1956
++ S+ ++ K +L QAHF LP D DL +L + + M ++ + +
Sbjct: 1514 IRFSTSV-MGTSACKAHLLFQAHFMRTVLPTDYRTDLKSVLDQCIRILQAMREMARLKNW 1572
Query: 1957 LNAT-TAMDLSQMIVQGVWDTDSPLKQIPFF---------DTDILEKCKNH---NVETVY 2003
L+AT + L QM W D PL +P D + + +NH T
Sbjct: 1573 LSATMNIILLQQMCHSARWHDDHPLLCLPHLSHEDARSIGDGMTIPQLQNHLEIEKSTSL 1632
Query: 2004 DVMALEDEERE---DIITLPENKLNKVAEFVNSYPNIELKYAL------------DMSAP 2048
D L ++ + L E + +V + + ++P I +K + P
Sbjct: 1633 DDAKLARRAQKLFRECTKLDEAQSREVLKALCNWPIINMKIMQLVDSRGNCVDIDETKKP 1692
Query: 2049 MKPHDKKMVTVTVSRDEEPETLNVSSKSLPH---EKTEAWWIFIGEKSSRQLYAIRKIAL 2105
+K ++ + + + N SS LP K W I +G S+ + +
Sbjct: 1693 VKVTAGEVYKLRIVMERVGPGKNNSSMHLPQWPKPKQAGWIIVVGNVSADMILNTTTVTG 1752
Query: 2106 TKMTQDYELEIELEDP---GDHELTIWCVCDSYLDADKEVTFNVNI 2148
+ T+ ++++ P G+HEL + + D YL D+E T +++
Sbjct: 1753 SHSTRS-TAKLDIRAPATKGNHELAVLILSDCYLGIDQEYTLRLDV 1797
>ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1058
Score = 336 bits (862), Expect = 2e-91
Identities = 220/651 (33%), Positives = 342/651 (51%), Gaps = 56/651 (8%)
Query: 491 SLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKV 550
+ N +QS V+ A+ +D N+L+CAPTG+GKT+VA+L +LRA+ K KV
Sbjct: 105 AFNAVQSRVFKPAYRSDGNMLVCAPTGSGKTDVALLCILRALK------------KGDKV 152
Query: 551 VYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITR 610
VY+ P++AL E +++++L G +V E TGD+ + + ++V+TPEK+DV TR
Sbjct: 153 VYVVPMRALATEIALKYKKKLG--GHRVVEYTGDTEAGAEDVMRCDVVVSTPEKFDVATR 210
Query: 611 KSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDTT-AEIPTRLVALSATLPNY 669
+ F + L+++DE+H+L D+RGPV+E+IV RVLR + R+V LSATLPNY
Sbjct: 211 RQHSV-FQGRIGLVVLDEIHMLQDDRGPVVETIVCRVLRHVELGQRLIRIVGLSATLPNY 269
Query: 670 IDVAKFLHVPDNGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEG 729
DV +FL +F FD +RP PL G+ K+ K ++ +K+ E G
Sbjct: 270 EDVGRFLRAEH--VFSFDQGYRPVPLKMSVIGMKRKS---KPQLEDELLQEKVREYLSNG 324
Query: 730 HQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLI 789
QV++FVHSR DT R AR L D+G +K + +L +L+
Sbjct: 325 KQVLVFVHSRGDTIRIARLL---------------GDEGERRNVK---AGTVTGALLELV 366
Query: 790 PYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEK 849
G G+HHAGL + R ED F ++VLV+T+TLAWGVNLPA+ VIIKGT Y K
Sbjct: 367 RRGVGVHHAGLPRRIRLYMEDEFKRRGVRVLVTTSTLAWGVNLPAYAVIIKGTRFYDSSK 426
Query: 850 SDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVV 909
+ + D+LQ+ GRAGRP++D GEG +IT + YY+++L +ES+++ V
Sbjct: 427 GGFADVGILDVLQIFGRAGRPQFDSRGEGCLITTGDKMDYYVSLLKNSRDVESRLLQHVA 486
Query: 910 DNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNRNIV 969
D +NAEI LG + + AV WL +++ VRM ++P Y L S D+ D E + I+
Sbjct: 487 DVMNAEIYLGTIEDVSTAVEWLKSTFMYVRMSKNPMYYGL--SREDLYDEERALSDYGIL 544
Query: 970 HTALNLLQNNGLVNY------DSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTL 1023
L+ G+V DS + TE GR K+ ++
Sbjct: 545 --TCRRLEECGMVRIYRQVAGDSRTWRFCSTEYGRVASMYYLSHETMEKWLEDIGNVYDE 602
Query: 1024 IDILRIFAMSEEFKNITVRQEEKTELEKLVERCPIPIKEKATDSLAKANILLQVYISKLR 1083
ILR+ + E + R E++ +++L E I + K L++ +I +
Sbjct: 603 DSILRLCFEARELSALRCRDEDEESIKELCEDLGIKYEVSVE---CKLMALVKAHIKRHP 659
Query: 1084 LEGFALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRM 1134
+ F+L D Y+ ++ R+ L ++ + +G T LL+ C + R+
Sbjct: 660 VTRFSLMCDGEYVIKNLRRILMGLCQVLMFQG----THLLVVRCSILLKRI 706
Score = 156 bits (394), Expect = 4e-37
Identities = 117/485 (24%), Positives = 225/485 (46%), Gaps = 32/485 (6%)
Query: 1302 EIKLPKPFPPAISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALIC 1361
E P+ P + S+ + + E + ++ +FN VQ+ VF Y N L+C
Sbjct: 72 EYSFPESVPMEVDASEIVYTDA----VGEDKQYFDHGAFNAVQSRVFKPAYRSDGNMLVC 127
Query: 1362 ATKGSGKTIMAELSLLNHWREGRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFS 1421
A GSGKT +A L +L ++G + +Y+ P + TE+ +KK+ GG + ++
Sbjct: 128 APTGSGKTDVALLCILRALKKG-DKVVYVVPMRALATEIALKYKKKL----GGHRVVEYT 182
Query: 1422 GNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQ-RIELIICDDIHEIGNEIIGPMY 1480
G+ + + + + ++++TP +F+ +RR + Q RI L++ D+IH + ++ GP+
Sbjct: 183 GDTEAGAEDVMRCDVVVSTPEKFDVATRR--QHSVFQGRIGLVVLDEIHMLQDDR-GPVV 239
Query: 1481 EIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALERQTPLTVDI 1540
E I+ R++ ++ IRIVGL L N +D G +L A+ +F+F R PL + +
Sbjct: 240 ETIVCRVLRHVELGQRLIRIVGLSATLPNYEDVGRFLRAEH--VFSFDQGYRPVPLKMSV 297
Query: 1541 ETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFATELVGLAVAKGID 1600
I +K + ++ + E S + + VFV R + + A
Sbjct: 298 ---IGMKRKSKPQLEDELLQEKVREYLSNGKQVLVFVHSRGDTIRIAR------------ 342
Query: 1601 LLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVASR 1660
L +E + L L++ G+G+ + G+ R + + + + +LV +
Sbjct: 343 -LLGDEGERRNVKAGTVTGALLELVRRGVGVHHAGLPRRIRLYMEDEFKRRGVRVLVTTS 401
Query: 1661 DCCFDAPSSSF-VFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASNKQQAHAKLITTM 1719
+ ++ V + T++++ + + D + +L++ G A + LITT
Sbjct: 402 TLAWGVNLPAYAVIIKGTRFYDSSKGGFADVGILDVLQIFGRAGRPQFDSRGEGCLITTG 461
Query: 1720 QRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLTYTYLYRRIHANP 1779
+ +YY L + ES L HV D++ E T+E ++ L T++Y R+ NP
Sbjct: 462 DKMDYYVSLLKNSRDVESRLLQHVADVMNAEIYLGTIEDVSTAVEWLKSTFMYVRMSKNP 521
Query: 1780 SFYGI 1784
+YG+
Sbjct: 522 MYYGL 526
>ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1481
Score = 314 bits (804), Expect = 1e-84
Identities = 242/791 (30%), Positives = 395/791 (49%), Gaps = 101/791 (12%)
Query: 488 ETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKK 547
E N IQS V + D NVL+CAPTG+GKT + M+++LR ER KK
Sbjct: 243 EDFMFNYIQSMVQDSVLKGDGNVLVCAPTGSGKTVIGMMSILR------EAERR----KK 292
Query: 548 FKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDV 607
+V YI P+KAL +E R R +G+ V E T D +E T ++V+TPEK+DV
Sbjct: 293 MRVGYIVPMKALAREICRTISRWFSGYGISVVEHTSDVYSGYAHLERTGVIVSTPEKFDV 352
Query: 608 ITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDTTAEIPTRLVALSATLP 667
+TR +TD F L++IDE+H++ D RG +E++VAR+ R+V LSATLP
Sbjct: 353 LTR-NTDLWFD----LVVIDEIHMVGDSRGAAVEAVVARM----AVRGGCRIVGLSATLP 403
Query: 668 NYIDVAKFLHVPDNGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAK 727
NY+DV F+ D +FYF FR P+ + + A +++ M +K+LE
Sbjct: 404 NYMDVGAFIGCNDPDIFYFGPEFRKSPIDYEVINV---GAREREMDMT---IEKVLENLD 457
Query: 728 EGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSD 787
V++FVHSR + A NE + + +D G+ + +
Sbjct: 458 SNGPVLVFVHSRNEALEVA--------NEIRRYMEKASDDGA----------DVSPEVRE 499
Query: 788 LIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSP 847
L+ + GIHHAGL + R EDL+ +G + V+VSTATLAWGVNLP TVIIKGTE+Y
Sbjct: 500 LLKHRVGIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKTVIIKGTEVYDA 559
Query: 848 EKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISK 907
S W + +++QM GRAGR D +GI+I+++ + +L Q I+S+++
Sbjct: 560 STSRWRPIKQIEMIQMFGRAGRSG-DDGCKGILISSKEN--EFLV----QRSIDSRLLPS 612
Query: 908 VVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLYNLQGSSGDMSDAELIRVNRN 967
+ D LNAEIV G + ++ ++W +++ R+ + E R+ +
Sbjct: 613 LCDCLNAEIVKG-MRRFEDMIDWFKHTFYYTRLVK--------------VSREPARMVKE 657
Query: 968 IVHTALNLLQNNGLVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLIDIL 1027
+V++AL LL++ GL+ +L ++ PTE+G + L+ I
Sbjct: 658 LVYSALKLLEDAGLI---ALEPAIHPTEVGEVSSRYYVHYRDARRLFDGLSHVMLEPSIF 714
Query: 1028 RIFAMSEEFKNITVRQEEKTELEKLVERCPIPIKEKATDSLAKANILLQVYISKLRLEGF 1087
+I + EF ++++ ++ L LV PIP + + +LLQ Y++ R+E
Sbjct: 715 QILEKAREFSDLSIDEKAMESLRGLV---PIPTE-------SSFGVLLQCYVAN-RIEST 763
Query: 1088 ALNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPFRQFKRC 1147
+L SQ+ R+FRALFE+ +RK ++K++L CK + R++P +P RQF
Sbjct: 764 SL-------SQNLCRMFRALFEIGVRKRL-GISKMILGWCKAAEHRIFPYQTPLRQFAD- 814
Query: 1148 PQEIIRRAEASGLPWN--DFLLLKNAHEVGEALRSPKNGKVAFDLLQRFPKIGIHCAMQP 1205
+ +R E +P+ + L + EVG G + L+ P+ I +++
Sbjct: 815 DKNALRDLEMKEIPFGMLEILGKEGLDEVG------IRGSGIIEHLRYVPRFSISPSVRV 868
Query: 1206 VTNSLLRFELELQPTWIWDLDSSSYSETFLVLVEDTDGEQTIYHETLHVGRNAINSIVYL 1265
+ L ++ + DS +S T+ + + D + E+ ++ + + + VY
Sbjct: 869 AESGYYVISLGMEKAFD---DSKVHSNTYYLFITDAEEEELVFCDAIVFEKGC--EYVYQ 923
Query: 1266 DFVVFLKQKML 1276
++ VF Q L
Sbjct: 924 NYGVFTGQPFL 934
Score = 103 bits (257), Expect = 3e-21
Identities = 115/500 (23%), Positives = 213/500 (42%), Gaps = 73/500 (14%)
Query: 1340 FNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNH-WREGRGRAIYICPFKTKIT 1398
FN +Q+ V D++ N L+CA GSGKT++ +S+L R + R YI P K
Sbjct: 247 FNYIQSMVQDSVLKGDGNVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAR 306
Query: 1399 ELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRR---WPERK 1455
E+ + + FS G + + ++ L ++ +I++TP +F+ L+R W
Sbjct: 307 EICRTISRWFS--GYGISVVEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDLW---- 360
Query: 1456 NIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGE 1515
+L++ D+IH +G+ G E ++ RM + RIVGL L N D G
Sbjct: 361 ----FDLVVIDEIHMVGDS-RGAAVEAVVARM-----AVRGGCRIVGLSATLPNYMDVGA 410
Query: 1516 WLGAKKSSIFNFTALERQTPLTVDIETSILVKSPTSNRMALTEIVESSNRVASPDETITV 1575
++G IF F R++P +D E + M + +++E+ + + V
Sbjct: 411 FIGCNDPDIFYFGPEFRKSP--IDYEVINVGAREREMDMTIEKVLEN----LDSNGPVLV 464
Query: 1576 FVTDRYECVSFATELVGLAVAKGIDLLRAEESSLHSYLNKVQDS------NLKTLLQSGI 1629
FV R E + A E + Y+ K D ++ LL+ +
Sbjct: 465 FVHSRNEALEVANE-------------------IRRYMEKASDDGADVSPEVRELLKHRV 505
Query: 1630 GILYQGMHYSDRNVVRKLHEYKVISILVASRDCCF--DAPSSSFVFVTTTQYFEGRENRY 1687
GI + G+ R V L+ I ++V++ + + P + V + T+ ++ +R+
Sbjct: 506 GIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKT-VIIKGTEVYDASTSRW 564
Query: 1688 IDYPVNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLL 1747
+++M G A S LI++ + + ++ + +S L + D L
Sbjct: 565 RPIKQIEMIQMFGRA-GRSGDDGCKGILISSKENEFLVQRSI------DSRLLPSLCDCL 617
Query: 1748 TTEFANQTLETKQDCIDLLTYTYLYRRIHANPSFYGIQDVTADEISSYLTELVEEAVTTM 1807
E + + +D ID +T+ Y R+ + E + + ELV A+ +
Sbjct: 618 NAEIV-KGMRRFEDMIDWFKHTFYYTRLVK----------VSREPARMVKELVYSALKLL 666
Query: 1808 KETELISVEGEANDSTEIAE 1827
++ LI++E A TE+ E
Sbjct: 667 EDAGLIALE-PAIHPTEVGE 685
>CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1002
Score = 292 bits (747), Expect = 5e-78
Identities = 184/468 (39%), Positives = 265/468 (56%), Gaps = 54/468 (11%)
Query: 368 IDEILGEMAQRNLSHLVEAYKAKPDSAKR-KLNSEPEVGTKKQKI--------EAEDE-P 417
ID + +R L + E K+ PD + ++ EP K KI EAE
Sbjct: 134 IDLLTDCNVERELKSIEECMKSLPDVQRIVEITEEPHESPPKTKITRLPSVLREAEKAIE 193
Query: 418 KVIALDDLKL-----------SQNTKFLSDVKISLPENSFKRVKDSYEEIHVPP--PKKV 464
K L++L L S+ F K LP S++ K SYEE HVP P+
Sbjct: 194 KQKTLNNLDLNFGERKMKKEESEQRGFFQSCK--LPVGSYRLQKKSYEEFHVPALQPRPF 251
Query: 465 DDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVA 524
+ + LPKWA+ AF + SLNRIQS + +A + ++LLCAPTGAGKTNV
Sbjct: 252 AGGEKITSVSELPKWAKPAFDGYK--SLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVG 309
Query: 525 MLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGD 584
+LT+L+ + ++ E+ + L++FK+VYIAP K+LVQE V F +RL FG+ V E+TG
Sbjct: 310 LLTMLQEIGNHLAED-GSVKLEEFKIVYIAPTKSLVQEMVGSFSKRLAPFGITVGEMTGQ 368
Query: 585 SNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIV 644
N K+Q TQ++V TPEK+DV+TRK + +++++VRL+IIDE+HLLHD+RGPV+ESIV
Sbjct: 369 MN--KEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIV 426
Query: 645 ARVLRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGLFYFDSTFRPCPLAQQYCGITE 704
+L + + HV L +FD+++RP PL QQ G+TE
Sbjct: 427 -------------QLFRIR---------KMWRHVKTEHLHFFDNSYRPVPLKQQIIGVTE 464
Query: 705 KN-ALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQ 763
KN AMN+A YDK+++ A + QV++FVH RK+T TA+ + + +D +SAF
Sbjct: 465 KNDDSATSQAMNEAVYDKIMKHAGKS-QVLVFVHYRKETTETAKAIRDACLEKDTLSAFM 523
Query: 764 GTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDL 811
S EIL+TE+ A + L DL+PYGF IH+AG+ + + E L
Sbjct: 524 REGSASTEILRTEAEQAKNLDLKDLLPYGFAIHNAGMNRPQKDDKEKL 571
Score = 77.4 bits (189), Expect = 2e-13
Identities = 85/372 (22%), Positives = 153/372 (40%), Gaps = 53/372 (14%)
Query: 1293 EYKIPVILSEIKLPKPFPPAISVSDSIKKSTKELQIDEFEALYNFHSFNKVQTEVFDTLY 1352
E+ +P + P+PF ++ S EL A + S N++Q+ + D+
Sbjct: 240 EFHVPALQ-----PRPFAGGEKIT-----SVSELPKWAKPAFDGYKSLNRIQSRLCDSAL 289
Query: 1353 HETENALICATKGSGKTIMAELSLL----NHWREGRG------RAIYICPFKTKITELLK 1402
E+ L+CA G+GKT + L++L NH E + +YI P K+ + E++
Sbjct: 290 RSKEHLLLCAPTGAGKTNVGLLTMLQEIGNHLAEDGSVKLEEFKIVYIAPTKSLVQEMVG 349
Query: 1403 NWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIEL 1462
++ KR + G + +G Q +++Q + +I+ TP +++ ++R+ ER Q + L
Sbjct: 350 SFSKRLAPF--GITVGEMTG--QMNKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRL 405
Query: 1463 IICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKS 1522
+I D+IH + ++ GP+ E I+ +F ++ W K
Sbjct: 406 LIIDEIHLLHDD-RGPVLESIV--QLFRIRKM---------------------WRHVKTE 441
Query: 1523 SIFNFTALERQTPLTVDIETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYE 1582
+ F R PL I ++ A+ E V + + VFV R E
Sbjct: 442 HLHFFDNSYRPVPLKQQIIGVTEKNDDSATSQAMNEAVYDKIMKHAGKSQVLVFVHYRKE 501
Query: 1583 CVSFATELVGLAVAKGIDLLRAEESS-----LHSYLNKVQDSNLKTLLQSGIGILYQGMH 1637
A + + K E S L + + ++ +LK LL G I GM+
Sbjct: 502 TTETAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHNAGMN 561
Query: 1638 YSDRNVVRKLHE 1649
++ KL E
Sbjct: 562 RPQKDDKEKLLE 573
>7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 678
Score = 291 bits (744), Expect = 1e-77
Identities = 218/678 (32%), Positives = 346/678 (50%), Gaps = 60/678 (8%)
Query: 16 YRYDEMSNQVLRADRSLIENRTDVHRDAEISQPKSMSGRIRLTEMGSAVKENGLEDNERA 75
Y Y SN VL+AD LIE RD + S+ G++ T MG +R
Sbjct: 11 YEYKANSNLVLQADVRLIERP---RRDEATGEVCSLVGKLDGTRMGDRY--------QRT 59
Query: 76 TAEKEFEKRMKSSSPQ--QTNSSRLDRTTVL----DDITSLNYIPTDDRNTEIYDEITTW 129
EK E+++K Q + R+ T+L D++ + Y P + Y+ + ++
Sbjct: 60 KPEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSF 119
Query: 130 CSEILGDDIPHSIIVDATDLIIVTLKQDESVDLESKKKTIEVALDTELDNASFNSLVKLV 189
E LGD P I+ A D I+ LK D D E +KK I+ L D F LV L
Sbjct: 120 IQEALGDQ-PRDILCGAADEILAVLKNDRLKDRE-RKKDIDSLLGAVTDER-FALLVNLG 176
Query: 190 KSISDYYAESADTGRTVNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNEK 249
K I+D+ +++ + Y E
Sbjct: 177 KKITDFGSDAVNA-----------LTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEI 225
Query: 250 TDNS--NDNFSVRSDIMNNSESLQIQSAA---VMEEIIDIKDIDGFYLQRKIRKQLKNIE 304
D+ ++ R D ++E+L + AA E + DID ++LQR + K K+
Sbjct: 226 RDDDAQDEGEEARIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDAM 285
Query: 305 ETKVQEMANNVYDLLANDISEEELTQNLHDIFGPDAKQLIRLIVSNRETLYWGHNLQRSA 364
+ Q A +V +L + + + L + G D I+ + NR+ + + L +
Sbjct: 286 VS--QSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQ 343
Query: 365 NENIDEILGEMAQRNLSHLVEAYKAKPDSAKRKLNSEPEV-GTKKQKIEAEDEP------ 417
++ + + E + N S L + + + D+ K + E E G+K+ K +AED
Sbjct: 344 TDSERQRIREKMRGN-SALAKILR-QLDTGKSEDQEEGEARGSKRGKGDAEDGGAAAAGQ 401
Query: 418 -----KVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPKKV--DDNFPL 470
+++ L+++ +Q + F+++ + LP+ S+++ + YEE+HVP K V D N L
Sbjct: 402 VAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEEL 461
Query: 471 VQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLR 530
++ LPK+ + F +T LNRIQS +Y A ++D N+LLCAPTGAGKTNVA+LT++R
Sbjct: 462 QPVDKLPKYVQPVFEGFKT--LNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMR 519
Query: 531 AMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQ 590
+ + E+ + + FK++Y+AP+K+LVQE V F RRL + + V+ELTGD L+++
Sbjct: 520 EIGKHINED-GTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 591 QIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIVARVLRD 650
QI TQ++V TPEKWD+ITRK + +F LVRL+IIDE+HLLHDERGPV+E++VAR +R+
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 651 -TTAEIPTRLVALSATLP 667
T + RL LSA +P
Sbjct: 639 IETTQEEVRL--LSACVP 654
Score = 79.7 bits (195), Expect = 5e-14
Identities = 46/180 (25%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 1337 FHSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLN----HWREGRG------R 1386
F + N++Q+ ++ EN L+CA G+GKT +A L+++ H E +
Sbjct: 478 FKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFK 537
Query: 1387 AIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEY 1446
IY+ P K+ + E++ N+ +R + ++ +G+ Q ++Q+A + +I+ TP +++
Sbjct: 538 IIYVAPMKSLVQEMVGNFGRRLA--CYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDI 595
Query: 1447 LSRRWPERKNIQRIELIICDDIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTP 1506
++R+ ER + + L+I D+IH + +E GP+ E ++ R I ++ +R++ P
Sbjct: 596 ITRKGGERTFVSLVRLVIIDEIHLLHDE-RGPVLEALVARTIRNIETTQEEVRLLSACVP 654
>YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1187
Score = 241 bits (616), Expect = 7e-63
Identities = 205/722 (28%), Positives = 351/722 (48%), Gaps = 85/722 (11%)
Query: 476 LPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHY 535
LP R F + T N++QSE +P+ + ++ N ++ +PTG+GKT + L +LR +
Sbjct: 126 LPDSFRGVF---KFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLI--- 179
Query: 536 YREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSN-LSKQQIEE 594
+E N+ D K++YIAP K+L E + + + V LT D++ L ++ ++
Sbjct: 180 --KETNS-DTNNTKIIYIAPTKSLCYEMYKNWFPSF--VNLSVGMLTSDTSFLETEKAKK 234
Query: 595 TQLLVATPEKWDVITRKSTDTS-FHKLVRLIIIDEVHLLHDERGPVIESIVARVLRDTTA 653
+++ TPEKWD++TR+ +D S +LV+L+++DE+H + ++RG +E I+ R+ T
Sbjct: 235 CNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRM---NTM 291
Query: 654 EIPTRLVALSATLPNYIDVAKFL----HVPDNGLFYFDSTFRPCPLAQQYCGITE--KNA 707
R VALSAT+PN D+A +L +P N + FD ++R L + G + KN
Sbjct: 292 CQNIRFVALSATVPNIEDLALWLKTNNELPAN-ILSFDESYRQVQLTKFVYGYSFNCKND 350
Query: 708 LKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDK 767
+K N + ++E + V+IF +R T TA++L+ I F + K
Sbjct: 351 FQKDAIYNSKLIE-IIEKHADNRPVLIFCPTRASTISTAKFLLNNHI-------FSKSKK 402
Query: 768 GSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLA 827
+ N +D+ L++ + G HHAG++ +DR+ E F G + +L ST+TLA
Sbjct: 403 RC-------NHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLA 455
Query: 828 WGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDV 887
GVNLPA+ VIIKGT+ ++ S+ D+LQM+GRAGRP+++ +G +I+T+
Sbjct: 456 VGVNLPAYLVIIKGTKSWN--SSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMK 513
Query: 888 RYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNVTSLDEAVNWLGYSYLSVRMKQSPHLY 947
+ Y +++ +ES + ++++L AE L V S++ AVNWL ++ VR ++P Y
Sbjct: 514 QTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAY 573
Query: 948 NLQGSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNY--DSLSK----SVQPTELGRXXX 1001
VNR + ++ Q N Y D+L K + E
Sbjct: 574 Q--------------EVNRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAY 619
Query: 1002 XXXXXXXXXAKYNRELTINS----TLIDILRIFAMSEEFKNITVRQEEKTELEKLVERCP 1057
+ + + IN+ +L IL + A SEEF + VR EK +L K + P
Sbjct: 620 GNAMTRHYISFESMKQFINAKKFLSLQGILNLLATSEEFSVMRVRHNEK-KLFKEINLSP 678
Query: 1058 IP----IKEKATDSL-----AKANILLQVYISKLRLEGF--------ALNADMIYISQSA 1100
+ + EK + K ++L+Q + L + L D + +
Sbjct: 679 LLKYPFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHC 738
Query: 1101 GRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSP--FRQFKRCPQEIIRRAEAS 1158
RL + + + + K K L + + ++ W N+P RQ K +RR
Sbjct: 739 FRLLKCMVDTFIEKSDGTSLKNTLFLLRSLNGHCW-ENTPMVLRQLKTIGLVSVRRLIRH 797
Query: 1159 GL 1160
G+
Sbjct: 798 GI 799
Score = 159 bits (402), Expect = 5e-38
Identities = 178/786 (22%), Positives = 330/786 (41%), Gaps = 100/786 (12%)
Query: 1310 PPAISVSDSIKKSTKELQI-DEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSGK 1368
P +++ S KK + D F ++ F FNK+Q+E F ++Y EN +I + GSGK
Sbjct: 108 PKKVTIRKSAKKCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGK 167
Query: 1369 TIMAELSLLNHWRE-----GRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGN 1423
T++ EL++L +E + IYI P K+ E+ KNW F +L+ G L S
Sbjct: 168 TVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLT---SDT 224
Query: 1424 LQHDQKQLAQSHLILATPNEFEYLSRRWPERKNI-QRIELIICDDIHEIGNEIIGPMYEI 1482
+ ++ + ++I+ TP +++ L+RRW + + + ++L++ D+IH I E G E+
Sbjct: 225 SFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTI-KEKRGASLEV 283
Query: 1483 IITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKK---SSIFNFTALERQTPLTV- 1538
I+TRM + +NIR V L + N +D WL ++I +F RQ LT
Sbjct: 284 ILTRM----NTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKF 339
Query: 1539 ----------DIETSILVKSPTSNRMALTEIVESSNRVASPDETITVFVTDRYECVSFAT 1588
D + + S L EI+E + + + +F R +S A
Sbjct: 340 VYGYSFNCKNDFQKDAIYNS------KLIEIIEKH----ADNRPVLIFCPTRASTISTAK 389
Query: 1589 ELVGLAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILYQGMHYSDRNVVRKLH 1648
L+ + ++++ H+ +K+ L +Q GI + G+ DR V K
Sbjct: 390 FLLNNHI-----FSKSKKRCNHNPSDKI----LNECMQQGIAFHHAGISLEDRTAVEKEF 440
Query: 1649 EYKVISILVASRDCCFDAPSSSF-VFVTTTQYFEGRENRYIDYPVNTILEMMGTAFTASN 1707
I+IL ++ ++ V + T+ + E + +Y +L+M+G A
Sbjct: 441 LAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQ--EYSDLDVLQMIGRAGRPQF 498
Query: 1708 KQQAHAKLITTMQRKEYYKKFLCDGLPTESSLPYHVIDLLTTEFANQTLETKQDCIDLLT 1767
+ A ++T + K+ Y+ + ESSL ++I+ L E + +T+ + + ++ L
Sbjct: 499 ETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLR 558
Query: 1768 YTYLYRRIHANP----------SFYGIQDVTADEISSYLTELVEEAVTTMKETELISVEG 1817
T+ Y R NP SF+ ++D ++ YL + T+ + ++I +
Sbjct: 559 NTFFYVRFGKNPAAYQEVNRYVSFHSVEDSQINQFCQYLLD-------TLVKVKIIDISN 611
Query: 1818 EANDSTEIAEEVISPNNACLISAIHAVSCLTICNFSRAASRSLRMSGXXXXXXXXXXFKT 1877
ST + H +S ++ F A + L + G F
Sbjct: 612 GEYKSTAYGNAMTR----------HYISFESMKQFIN-AKKFLSLQGILNLLATSEEFSV 660
Query: 1878 LPLRLHDIKPLRKLYDISPL--------KLSSEFDPRSTTAKVFVLLQAHFSGLHLP--- 1926
+ +R H+ K L K ++SPL K S+ R + KV +L+Q GL P
Sbjct: 661 MRVR-HNEKKLFKEINLSPLLKYPFLTEKKQSQIIDR-VSQKVSLLIQYELGGLEFPSYE 718
Query: 1927 ------MDLSLDLSEILSKAPSLAGTMVD-ILSMNGYLNATTAMDLSQMIVQGVWD-TDS 1978
L D + L MVD + + + + L + + W+ T
Sbjct: 719 GASKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWENTPM 778
Query: 1979 PLKQIPFFDTDILEKCKNHNVETVYDVMALEDEEREDIITLPENKLNKVAEFVNSYPNIE 2038
L+Q+ + + H + + ++ L D + E + L K+ ++ P +
Sbjct: 779 VLRQLKTIGLVSVRRLIRHGITNLEEMGHLSDTQIEYYLNLKIGNGIKIKNDISLLPCLN 838
Query: 2039 LKYALD 2044
++ L+
Sbjct: 839 IRTKLE 844
>Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 731
Score = 205 bits (521), Expect = 7e-52
Identities = 148/445 (33%), Positives = 227/445 (50%), Gaps = 38/445 (8%)
Query: 480 ARSAFPTSETTSLNRIQSEVYPTAFNT----DANVLLCAPTGAGKTNVAMLTVLRAMSHY 535
A +AF SE ++ + AF D N ++CAPTG+GKT V L + R +
Sbjct: 283 ANNAFSASEIGE-GMFKAPSFSVAFQPHDIQDRNFVICAPTGSGKTVVFELAITRLLMEV 341
Query: 536 YREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQ-QIEE 594
N K+VY+AP+KAL ++ +++ + G+ ELTGD+ + +I+
Sbjct: 342 PLPWLN------IKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH 395
Query: 595 TQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDE-RGPVIESIVARV------ 647
+++ TPEKWD +TRK D S +LVRL +IDEVH++ DE RGP +E +V+R+
Sbjct: 396 AHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSV 455
Query: 648 ---LRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGL--FYFDSTFRPCPLAQQYCGI 702
L++T+ IP R VA+SAT+PN D+A++L + D + RP L + G
Sbjct: 456 SQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGF 515
Query: 703 ---TEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKI 759
+ + K +N +++ + ++F +RK + A L+ K
Sbjct: 516 PCSSNQTEFKFDLTLNYKIAS-VIQMYSDQKPTLVFCATRKGVQQAASVLV-------KD 567
Query: 760 SAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKV 819
+ F T + + K S D L D++ G HHAG+ DR + E F G L V
Sbjct: 568 AKFIMTVEQKQRLQKYAYS-VRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPV 626
Query: 820 LVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGI 879
L +T+TLA GVNLPAH V+IK T Y+ + DILQM+GRAGRP++D +
Sbjct: 627 LFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFE--EYSETDILQMIGRAGRPQFDTTATAV 684
Query: 880 IITNQSDVRYYLAVLNQQLPIESQM 904
I+T S Y+ +L + +ES M
Sbjct: 685 IMTRLSTRDKYIQMLACRDTVESSM 709
Score = 116 bits (291), Expect = 3e-25
Identities = 101/408 (24%), Positives = 185/408 (44%), Gaps = 32/408 (7%)
Query: 1354 ETENALICATKGSGKTIMAELSLLNHWREG-----RGRAIYICPFKTKITELLKNWKKRF 1408
+ N +ICA GSGKT++ EL++ E + +Y+ P K ++ +WK++F
Sbjct: 312 QDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKF 371
Query: 1409 SHLAGGKLINAFSGN-LQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDD 1467
+ G +G+ + D ++ +H+I+ TP +++ ++R+W + +Q + L + D+
Sbjct: 372 GPI--GLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 429
Query: 1468 IHEIGNEIIGPMYEIIITRM--IFIATQLEKN------IRIVGLGTPLANAKDFGEWLGA 1519
+H + +E GP E++++RM + +Q KN +R V + + NA+D EWL
Sbjct: 430 VHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSD 489
Query: 1520 KKSSIFNFTALERQTPLTVDIETSILVKSPTSNR------MALTEIVESSNRVASPDETI 1573
+ E P V ++ +L +SN+ + L + S ++ S +
Sbjct: 490 GERPAVCLKMDESHRP--VKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPT 547
Query: 1574 TVFVTDRYECVSFATELVGLAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQSGIGILY 1633
VF R A+ LV AK I + ++ L Y V+DS L+ +L+ G +
Sbjct: 548 LVFCATRKGVQQAASVLV--KDAKFI-MTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHH 604
Query: 1634 QGMHYSDRNVVRKLHEYKVISILVASRDCCF--DAPSSSFVFVTTTQYFEGRENRYIDYP 1691
GM SDR VV + +L + + P+ V +T Y G + +Y
Sbjct: 605 AGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGG---LFEEYS 661
Query: 1692 VNTILEMMGTAFTASNKQQAHAKLITTMQRKEYYKKFLCDGLPTESSL 1739
IL+M+G A A A ++T + ++ Y + L ESS+
Sbjct: 662 ETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSM 709
>At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1113
Score = 200 bits (509), Expect = 2e-50
Identities = 200/713 (28%), Positives = 325/713 (45%), Gaps = 84/713 (11%)
Query: 466 DNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAM 525
D L + LP RSAF N +QSE +P F++D N+++ APTG+GKT +
Sbjct: 2 DTHTLKSVSDLPGNFRSAF---SFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFE 58
Query: 526 LTVLRAMSHYYREERNAFDLK-KFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGD 584
L +LR S +E + K K VYI+P KALVQE++R++ ++ + +G+ ELTGD
Sbjct: 59 LCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGD 118
Query: 585 S-NLSKQQIEETQLLVATPEKWDVITR---KSTDTSFHKLVRLIIIDEVHLLHDERGPVI 640
+ S + I++ +++ TPEK+D ++R S F + L++IDEVHLL+D RG +
Sbjct: 119 NETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAAL 178
Query: 641 ESIVARV--------LRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNG---------- 682
E+IV+R+ LR +T RL+A+SAT+PN D+A++L VP G
Sbjct: 179 EAIVSRLKILSSNHELRSSTL-ASVRLLAVSATIPNIEDLAEWLKVPTAGIKSFIIVYLP 237
Query: 683 LFY-FDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEAAKEGHQVIIFVHSRKD 741
+FY F RP L + G T A K N ++K+ I+ + SR
Sbjct: 238 MFYRFGEEMRPVKLTTKVFG-TGYAAAK-----NDFLFEKVYSFC------ILDLDSRAQ 285
Query: 742 TARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLT 801
A A+ L Q + + F + LE L+ S +D+ + I G G
Sbjct: 286 EA--AQKLAQTAMTYGYSNPFI-KSREQLERLREASPMCSDKQMQSYILQG------GPQ 336
Query: 802 KDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDIL 861
R+L E + L + W N PA T ++ + W M+ P
Sbjct: 337 PRRRALPEWRYP----SYLHDQHSCPW--NQPACTYSATRKKV-----TTWNMIVP---- 381
Query: 862 QMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAEIVLGNV 921
+ RAGRP +D G II+T + V Y +LN +ESQ++ ++++L AEIV +
Sbjct: 382 -LYYRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTI 440
Query: 922 TSLDEAVNWLGYSYLSVRMKQSPHLYNL-QGSSGDMSDAELIRVNRNIVHTALNLLQNNG 980
+ + A+ W+ SYL VRMK++P Y + +G D + L + + +N L
Sbjct: 441 SDITRAIEWMKCSYLYVRMKKNPENYAIKKGIPKDRVEKHL----QELCLQKINELSQYQ 496
Query: 981 LVNYDSLSKSVQPTELGRXXXXXXXXXXXXAKYNRELTINSTLIDILRIFAMSEEFKNIT 1040
++ D+ ++P E GR KY + +L + L I +EE I
Sbjct: 497 MIWTDTDGFVLKPEEPGR-LMTKYYLKFETMKYIINTPTSYSLDEALHIVCHAEEISWIQ 555
Query: 1041 VRQEEKTELEKLVERCPIPIKEKATDSLAKANILLQVYISKL------------RLEGFA 1088
+R+ EK L + ++ D+ K +Q KL + +
Sbjct: 556 LRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLS 615
Query: 1089 LNADMIYISQSAGRLFRALFEMCLRKGWPRLTKLLLTICKCVDSRMWPTNSPF 1141
+ D I + R+ R + E + K + T + K + ++W +SP+
Sbjct: 616 MTQDANSICSNGSRIARCMKEYFIYKKNYKGTLSSTLLAKSLYQKLW-DDSPY 667
Score = 88.6 bits (218), Expect = 1e-16
Identities = 59/228 (25%), Positives = 110/228 (47%), Gaps = 24/228 (10%)
Query: 1321 KSTKELQIDEFEALYNFHSFNKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNHW 1380
KS +L F + ++F FN +Q+E F +H N +I A GSGKT++ EL +L +
Sbjct: 7 KSVSDLP-GNFRSAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLF 65
Query: 1381 ------------REGRGRAIYICPFKTKITELLKNWKKRFSHLAGGKLINAFSGNLQHDQ 1428
+G + +YI P K + E L++W ++F+ G + N +
Sbjct: 66 SKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSW-GISCLELTGDNETYST 124
Query: 1429 KQLAQSHLILATPNEFEYLSRRWPERKNI---QRIELIICDDIHEIGNEIIGPMYEIIIT 1485
K + + +IL TP +F+ +SR + I L++ D++H + N+ G E I++
Sbjct: 125 KNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLL-NDPRGAALEAIVS 183
Query: 1486 RMIFIATQLE------KNIRIVGLGTPLANAKDFGEWLGAKKSSIFNF 1527
R+ +++ E ++R++ + + N +D EWL + I +F
Sbjct: 184 RLKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKSF 231
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 144 bits (362), Expect = 2e-33
Identities = 156/638 (24%), Positives = 275/638 (42%), Gaps = 89/638 (13%)
Query: 348 VSNRETLYWGHNLQRSANENIDEILGEMAQRNLSH----------LVEAYKAKPDSAKRK 397
V + + +Y+ NLQ S+N+ D + E ++ SH +E + +S+ +
Sbjct: 195 VPSSQAIYF-ENLQNSSNDLGDHSMKERDWKSSSHNTVNEELPHNCIEQPQQNDESSSKV 253
Query: 398 LNSEPEVGTKKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIH 457
S K K ++ A + +K L D +S N K+ +S
Sbjct: 254 RTSSDMNRRKSIKDHLKNAMTGNAKAQTPIFSRSKQLKDTLLSEEINVAKKTIESSSNDL 313
Query: 458 VP---PPKKVDDNFPLVQ-IESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLC 513
P P KV D + + IE L +W + +LN +Q N++
Sbjct: 314 GPFYSLPSKVRDLYAQFKGIEKLYEWQHTCL------TLNSVQER---------KNLIYS 358
Query: 514 APTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHH 573
PT GKT VA + +L+ + ++ V+ I P A+VQE++
Sbjct: 359 LPTSGGKTLVAEILMLQELLCCRKD-----------VLMILPYVAIVQEKISGLSSFGIE 407
Query: 574 FGVKVAELTGDSNL--SKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHL 631
G V E G ++ E+ L +AT EK + +T + L+++DE+H+
Sbjct: 408 LGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHM 467
Query: 632 LHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGLFYFDSTF 690
+ + RG +E +A++L + T+++ +SATL N D+ KFL Y+ S F
Sbjct: 468 IGEGSRGATLEMTLAKILYTSKT---TQIIGMSATLNNVEDLQKFLQAE-----YYTSQF 519
Query: 691 RPCPLAQQYCGITEKNALKKKNAMNQACYDKLL-----EAAKE---------------GH 730
RP L ++Y I + A N + +LL + K+ +
Sbjct: 520 RPVEL-KEYLKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNY 578
Query: 731 QVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIP 790
++F S+K+ A +I K ++++ + + ++ LK + L IP
Sbjct: 579 SCLVFCPSKKNCENVAE-MICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIP 637
Query: 791 YGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKS 850
+G HH+GLT D+R L E+ ++ G+L + T+TLA GVNLPA VI++ +
Sbjct: 638 FGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKE--- 694
Query: 851 DWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIES------QM 904
L QM+GRAGR D GE I+I + D + L ++ + P+E+ Q
Sbjct: 695 ---FLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITK--PLENCYSHLVQE 749
Query: 905 ISKVVDNLNAEIV-LGNVTSLDEAVNWLGYSYLSVRMK 941
+K + L ++ L T+LD+ +++ ++ V+ K
Sbjct: 750 FTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQK 787
>Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2724
Score = 130 bits (326), Expect = 3e-29
Identities = 137/539 (25%), Positives = 242/539 (44%), Gaps = 82/539 (15%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
N++ APT AGKT VA L +L+ + +++K K ++I P ++ +E+ Q
Sbjct: 243 NLVYSAPTSAGKTLVAELLILKRV----------LEMRK-KALFILPFVSVAKEKKYYLQ 291
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
G+KV G ++ S+ + V T E+ + + + + + L+ ++++DE
Sbjct: 292 SLFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDE 350
Query: 629 VHLLHDE-RGPVIESIVARVLRDTTAEIP------------TRLVALSATLPNYIDVAKF 675
+H+L D RG ++E ++ ++ T ++V +SATLPN VA +
Sbjct: 351 LHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASW 410
Query: 676 LHVPDNGLFYFDSTFRPCPLAQQY-----CGITEKNALKKKNAMNQACYDK------LLE 724
L+ L++ D FRP PL + + +++ M Q D+ E
Sbjct: 411 LNAE---LYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYE 465
Query: 725 AAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGS------------LEI 772
+ H V++F S+K + A + ++ N + +G K S LE+
Sbjct: 466 TICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGEGLVKPSECPPVILEQKELLEV 525
Query: 773 LKT--ESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGV 830
+ + D L +P+G HHAGLT ++R + E F GL++VL +T+TL+ GV
Sbjct: 526 MDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGV 585
Query: 831 NLPAHTVIIKGTEMYSPEKSDWVMLPPQDIL---QMLGRAGRPRYDVNGEGIIITNQSDV 887
NLPA VII+ T ++ P DIL QM+GRAGR D G I+I S+
Sbjct: 586 NLPARRVIIR-TPIFGGR--------PLDILTYKQMVGRAGRKGVDTVG-SILICKNSEK 635
Query: 888 RYYLAVLNQQL-PIESQMISKVVDNLNA-------EIVLGNVTSLDEAVN-WLGYSYLSV 938
+A+L L P+ S + + + + EI++G V S + ++ + ++L+
Sbjct: 636 SKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAA 695
Query: 939 RMKQSPHLYNLQGSSGDMSDAELIRVNRNIVHTALNLLQNNGLVNYDSLSKSVQPTELG 997
MK+ QG + +L + ++ N + + + K PT LG
Sbjct: 696 SMKEGK-----QGIQRNQESVQLGAIEACVMWLLENEFIQSTEASDGTEGKVYHPTHLG 749
Score = 60.5 bits (145), Expect = 3e-08
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 14/178 (7%)
Query: 1354 ETENALICATKGSGKTIMAELSLLNHWREGRGRAIYICPFKTKITELLKNWKKRFSHLAG 1413
E +N + A +GKT++AEL +L E R +A++I PF + E + F +
Sbjct: 240 EGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV-- 297
Query: 1414 GKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGN 1473
G ++ + G+ + + + + T L R E + + +++ D++H +G+
Sbjct: 298 GIKVDGYMGSTS-PSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGD 356
Query: 1474 EIIGPMYEIIITRMIFI-----------ATQLEKNIRIVGLGTPLANAKDFGEWLGAK 1520
G + E+++T++ +I A+ L ++IVG+ L N + WL A+
Sbjct: 357 SHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAE 414
>CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 923
Score = 127 bits (319), Expect = 2e-28
Identities = 123/451 (27%), Positives = 199/451 (43%), Gaps = 55/451 (12%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
N +L PTGAGKT +A + +LR ++K + + P A+VQE++
Sbjct: 186 NCILSLPTGAGKTLIAEVLMLREAI-----------VRKRNAILVLPYVAIVQEKISALA 234
Query: 569 RRLHHFGVKVAELTGDSNLSK--QQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIII 626
FG+ + E + ++ + + VAT EK +++ V ++++
Sbjct: 235 PFEDAFGINIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDRVGMVVV 294
Query: 627 DEVHLLHDE-RGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGLFY 685
DE+H++ D RG ++E ++A+ L T +I V +SATLPN D+ L F
Sbjct: 295 DELHMIGDGGRGAILEQLLAKFLYKGTGQI----VGMSATLPNIDDLKFALRA-----FV 345
Query: 686 FDSTFRPCPLA------QQYCGITEKNALKKKNAM---NQACYD-----KLLEAAKEGHQ 731
+ + FRP L Q ++E L + N D +LL +
Sbjct: 346 YSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLAKLIPKNS 405
Query: 732 VIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPY 791
+IF ++K+ A + + L + + +D L D L I
Sbjct: 406 AVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILS 465
Query: 792 GFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSD 851
G HH+GLT+D+R E F +GL+ V+ +T+TLA GVNLP VIIK M E+
Sbjct: 466 GVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIK-APMVGRER-- 522
Query: 852 WVMLPPQDILQMLGRAGRPRYDVNGEGI-IITNQSDVRYYLAVLNQQLP-------IESQ 903
L LQM GRAGR +D G+ I II + R++ +L +P E
Sbjct: 523 ---LGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEES 579
Query: 904 MISKVVDNLNAEIVLGNVTSLDEAVNWLGYS 934
M S ++D +VL +++E + + YS
Sbjct: 580 MGSFILDC----VVLKLAENIEEIMTAVRYS 606
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 122 bits (306), Expect = 6e-27
Identities = 140/540 (25%), Positives = 225/540 (40%), Gaps = 115/540 (21%)
Query: 393 SAKRKLNSEPEVGTKKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDS 452
S KRK E QK++ ED+ I ++L + DV S PEN
Sbjct: 3 SVKRKSVEESSDSAPPQKVQREDDSTQIINEEL-----VGCVHDV--SFPENYVPLAPS- 54
Query: 453 YEEIHVPPPKKVDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLL 512
+H PP K +FP +L+ QSE N ++ V++
Sbjct: 55 ---VHNKPPAK---DFPF--------------------TLDSFQSEAIKCLDNGES-VMV 87
Query: 513 CAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLH 572
A T AGKT VA + ++ R V+Y +P+KAL ++ R+F+
Sbjct: 88 SAHTSAGKTVVASYAIAMSLKENQR------------VIYTSPIKALSNQKYRDFKEEFS 135
Query: 573 HFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLL 632
G+ ++T D N S + T++L + K I R+ V II DEVH +
Sbjct: 136 DVGLMTGDVTIDPNASCL-VMTTEILRSMQYKGSEIMRE---------VAWIIFDEVHYM 185
Query: 633 HD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPN---YIDVAKFLHVPDNGLFYFDS 688
D ERG V E + +++ R V LSAT+PN + D +H + Y D
Sbjct: 186 RDSERGVVWEESIVMAPKNS------RFVFLSATVPNAKEFADWVAKVHQQPCHIVYTD- 238
Query: 689 TFRPCPLAQQ---------YCGITEKNAL------KKKNAM----------NQACYDKLL 723
+RP PL Y + EK+ K NA+ + + K L
Sbjct: 239 -YRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQKGL 297
Query: 724 EAAKEGHQ-----------------VIIFVHSRKDTARTARWLIQKLIN-EDKISAFQGT 765
K G + VI+F S+K+ A + + ++N +D+ A +
Sbjct: 298 VIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETI 357
Query: 766 DKGSLEILKTESSNATDRS-LSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTA 824
++++L + S + ++ G G+HH+GL + + E LF +GL+K L +T
Sbjct: 358 FASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE 417
Query: 825 TLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQ 884
T + G+N+PA TV+ + +K W L + +QM GRAGR D G I++ ++
Sbjct: 418 TFSIGLNMPAKTVVFTNVRKFDGDKFRW--LSSGEYIQMSGRAGRRGIDKRGICILMVDE 475
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 119 bits (299), Expect = 4e-26
Identities = 149/580 (25%), Positives = 240/580 (40%), Gaps = 110/580 (18%)
Query: 359 NLQRSANENIDEILGEMAQRNLSHLVEAYKAKPDSAKRKLNSEPEVGTKKQKIEAEDEPK 418
N S N E E + L L+ + K D NSE E + + + K
Sbjct: 4 NSTDSKNFQFSEGSRESSNDELKVLLRDTETKEDEKSSFSNSEEE--SIIENLSDSSVNK 61
Query: 419 VIALDDLKLSQ---NTKFLSDV-KISLPENSFKR----VKDSYEEI----HVP--PPKKV 464
A + LKLS +K+L+ + K + SF V D Y+ I H+P PP K
Sbjct: 62 EYAKNSLKLSDAVSESKYLNPLLKDKRHDRSFALHKVVVPDDYDYIPLNKHIPSDPPAKT 121
Query: 465 DDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVA 524
+P + F ++ + R++S VL+ A T AGKT +A
Sbjct: 122 ---YP---------FELDPFQSTAIKCVERMES------------VLVSAHTSAGKTVIA 157
Query: 525 MLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGD 584
+ +A+ + R V+Y +P+K+L ++ RE L FG V +TGD
Sbjct: 158 EYAIAQALKNRQR------------VIYTSPIKSLSNQKYREL---LSEFG-DVGLMTGD 201
Query: 585 SNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDERGPVIESIV 644
+++ L+ T E + K+++ + +I DEVH + D+ V+
Sbjct: 202 VSINPS----ASCLIMTTEILRAMLYKNSEIMHE--IAWVIFDEVHYMRDKDRGVVWEET 255
Query: 645 ARVLRDTTAEIPTRLVALSATLPNYIDVAKFL---HVPDNGLFYFDSTFRPCPLAQQ--- 698
+L D R + LSATLPN + A+++ H + Y D +RP PL
Sbjct: 256 LILLPDAI-----RFIFLSATLPNALQFARWISEIHKQPCHVVYTD--YRPTPLQHFIYP 308
Query: 699 ------YCGITEKNALKKKN----------AMNQACYDKLLEAAKEGHQ----------- 731
Y + EKN K +N + Q Y K + K+
Sbjct: 309 QGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSN 368
Query: 732 ----VIIFVHSRKDTARTARWLIQKLIN--EDKISAFQGTDKGSLEILKTESSNATDRSL 785
+I+F S+K+ A + +N E+K + D ++ + + +
Sbjct: 369 RYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEM 428
Query: 786 SDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMY 845
L+ G GIHH+GL + L E LF +GL+++L +T T + G+N+PA TV+ + +
Sbjct: 429 RSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKF 488
Query: 846 SPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQS 885
S W L + +QM GRAGR D G I+I +QS
Sbjct: 489 SGNNFRW--LTSGEYMQMSGRAGRRGIDTKGLSIVILDQS 526
>7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1051
Score = 113 bits (282), Expect = 4e-24
Identities = 113/404 (27%), Positives = 180/404 (43%), Gaps = 53/404 (13%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
N++ PT GKT VA + +LR + ERN V++I P ++VQE+V
Sbjct: 282 NLIYALPTSGGKTLVAEILMLREL---LCRERN--------VLFILPYVSIVQEKVSAMS 330
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQ--LLVATPEKWDVITRKSTDTSFHKLVRLIII 626
V E T Q + L +A+ EK V+ D + L+++
Sbjct: 331 PFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVV 390
Query: 627 DEVHLLHDE-RGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGLFY 685
DE+HL+ ++ RG +E+ + +V+ A I ++V +SAT+ N +++ FL+
Sbjct: 391 DELHLIGEKGRGATLEAFLTKVMF-LNANI--QIVGMSATIGNLSEISSFLNAD-----V 442
Query: 686 FDSTFRPCPLAQQY-CG--ITEKNALKK----------------KNAMNQACYDKLL--- 723
+ FRP L + CG + E N+ + A+ +A D L
Sbjct: 443 YTRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAGLI 502
Query: 724 -EAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATD 782
E A E H ++F SRK+ A L+ +++ + K + ++K L +
Sbjct: 503 SECAPE-HCCLVFCPSRKNCENVAL-LLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILS 560
Query: 783 RSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGT 842
L+ +PYG HH+GLT D+R E + G++ V+ T+TLA GVNLPA VII+
Sbjct: 561 PVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAP 620
Query: 843 EMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSD 886
+ L QM+GRAGR GE I+I D
Sbjct: 621 YVGQE------FLTLCKYKQMVGRAGRAGLGEAGESILIAQSKD 658
>At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1548
Score = 112 bits (279), Expect = 8e-24
Identities = 105/377 (27%), Positives = 172/377 (44%), Gaps = 57/377 (15%)
Query: 593 EETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDE-RGPVIESIVARVLRDT 651
++T + V T EK + + + + + +I+IDE+H++ D+ RG ++E ++ + LR
Sbjct: 54 KDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTK-LRYA 112
Query: 652 TAEIPT---------------------RLVALSATLPNYIDVAKFLHVPDNG------LF 684
E + ++V +SAT+PN VA +L V
Sbjct: 113 AGEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQVSKTNHNLCVYAA 172
Query: 685 YFDSTFRPCPLAQQY-CGITEKN-------ALKKKNAMNQACYDKLLE----AAKEGHQV 732
+ + FRP PL + G T N + K M D ++E +EG+ V
Sbjct: 173 LYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSV 232
Query: 733 IIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKT-----ESSNATDRSLSD 787
+IF SRK TAR I KLI ++ G + ++I S + D L +
Sbjct: 233 LIFCSSRKGCESTARH-ISKLIKNVPVNV-DGENSEFMDIRSAIDALRRSPSGVDPVLEE 290
Query: 788 LIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSP 847
+P G HHAGLT ++R + E + GL++VL +T+TLA GVNLPA VI + M
Sbjct: 291 TLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR-QPMIGR 349
Query: 848 EKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISK 907
+ D QM GRAGR D G+ ++I +++ +A+LN+ P +S+
Sbjct: 350 DFIDGTRYK-----QMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSE 404
Query: 908 VVDNLN---AEIVLGNV 921
+ + E+V G +
Sbjct: 405 DKNGMTHAILEVVAGGI 421
Score = 52.8 bits (125), Expect = 6e-06
Identities = 66/331 (19%), Positives = 127/331 (37%), Gaps = 59/331 (17%)
Query: 1414 GKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGN 1473
GK + ++ GN Q + + + T + L R E + + +I+ D++H +G+
Sbjct: 37 GKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGD 95
Query: 1474 EIIGPMYEIIITRMIFIATQLEKN-------------------IRIVGLGTPLANAKDFG 1514
+ G + E+++T++ + A + ++IVG+ + N
Sbjct: 96 QHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVA 155
Query: 1515 EWLGAKKSS--IFNFTALERQTPLTVDIETSILVKSPTSNRMALT--------------- 1557
+WL K++ + + AL + V +E I V S N+
Sbjct: 156 DWLQVSKTNHNLCVYAALYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKDP 215
Query: 1558 -EIVESSNRVASPDETITVFVTDRYECVSFATELVGLA--VAKGIDLLRAEESSLHSYLN 1614
IVE N V ++ +F + R C S A + L V +D +E + S ++
Sbjct: 216 DHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAID 275
Query: 1615 KVQ------DSNLKTLLQSGIGILYQGMHYSDRNVVRKLHEYKVISILVA---------- 1658
++ D L+ L SG+ + G+ +R +V + ++ +L A
Sbjct: 276 ALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
Query: 1659 -SRDCCFDAPSSSFVFVTTTQY--FEGRENR 1686
+R F P F+ T+Y GR R
Sbjct: 336 PARRVIFRQPMIGRDFIDGTRYKQMSGRAGR 366
>7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2059
Score = 111 bits (278), Expect = 1e-23
Identities = 126/492 (25%), Positives = 214/492 (42%), Gaps = 56/492 (11%)
Query: 426 KLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPKKVDDN-FPLVQIESLPKWARSAF 484
+++QN +S ++ + NS R++++ E P +D N + +LP ++ +
Sbjct: 169 QVTQNLSSMSPNQLRVSPNS-SRIREAMPE---RPAMPLDLNTLRSISAWNLPMSIQAEY 224
Query: 485 PTSETTSLNRIQSEVY--PTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNA 542
+ Q E P N++ APT AGKT V+ + +L+ + ER
Sbjct: 225 KKKGVVDMFDWQVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEILMLKTVL-----ERGK 279
Query: 543 FDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATP 602
KV+ I P ++V+E++ Q L G +V G E + + T
Sbjct: 280 ------KVLLILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYT-PPGGFESLHVAICTI 332
Query: 603 EKWDVITRKSTDTSFHKLVRLIIIDEVHLLHDE-RGPVIESIVARVLRDTTAE-IPTRLV 660
EK + I K + + + ++++DEVHL+ D+ RG ++E ++A++L + + +++
Sbjct: 333 EKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVI 392
Query: 661 ALSATLPNYIDVAKFLHVPDNGLFYFDSTFRPCPLAQQYCGITE---------KNALKKK 711
+SATL N + +L + + +RP L + T ++ K+K
Sbjct: 393 TMSATLENVQLLQSWLDAE-----LYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQK 447
Query: 712 NAMNQACYDK------LLEAAKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQG- 764
+ D +E EG VI+F S+ A L + + K G
Sbjct: 448 VLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQ 507
Query: 765 ---TDKGSLEILKTESS-----NATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGL 816
T+ I + + D +S I Y HHAGLT ++R + E F G
Sbjct: 508 RLRTNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGA 567
Query: 817 LKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNG 876
LKVLV+T+TL+ GVNLPA V+I+ + S QM+GRAGR D G
Sbjct: 568 LKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLT------YRQMIGRAGRMGKDTLG 621
Query: 877 EGIIITNQSDVR 888
E I+I N+ + R
Sbjct: 622 ESILICNEINAR 633
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 106 bits (264), Expect = 5e-22
Identities = 100/397 (25%), Positives = 180/397 (45%), Gaps = 52/397 (13%)
Query: 507 DANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVRE 566
D +VL+ A T +GKT VA + ++ R VVY +P+KAL ++ RE
Sbjct: 85 DESVLVSAHTSSGKTVVAEYAIAMSLRSNQR------------VVYTSPIKALSNQKYRE 132
Query: 567 FQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIII 626
G+ ++T + S + T++L + + R+ + II
Sbjct: 133 LLSEFSDVGLMTGDVTINPTASCL-VMTTEILRNMLYRGGEVVRE---------IHWIIF 182
Query: 627 DEVHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL-HVPDNGLF 684
DE+H + D ERG V E + + + R+V LSAT+PN ++ A+++ H+ +
Sbjct: 183 DEIHYMRDKERGVVWEETIILLPKHV------RMVFLSATIPNALEFAEWISHIQSQVVH 236
Query: 685 YFDSTFRPCPLAQQYCG----------------ITEKNALKKKNAMNQACYDKLLEAAKE 728
+ R PL + ++ +++K+N + + + +A+
Sbjct: 237 VVYTEKRVTPLVHYFRSNKLYKIKDAKFHKSNFLSAMRSIRKRNVGPREVGEAIGDASLP 296
Query: 729 GHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNATD-RSLSD 787
V++F RKD R A L + + +++ Q ++ L+ E +++
Sbjct: 297 ---VVVFSFKRKDCERFAMKLDGRYLTDEEARTVQTIFTNAIMSLRKEDREIPIIQNILP 353
Query: 788 LIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSP 847
L+ G GIHH+GL + + E LF +GLLKVL +T T + G+N+PA +V+ + +
Sbjct: 354 LLMRGIGIHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDG 413
Query: 848 EKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQ 884
E ++ + +QM GRAGR D G I I ++
Sbjct: 414 EAMR--LVSSGEYIQMSGRAGRRGIDSMGIVISIISE 448
Score = 64.3 bits (155), Expect = 2e-09
Identities = 89/363 (24%), Positives = 147/363 (39%), Gaps = 59/363 (16%)
Query: 1356 ENALICATKGSGKTIMAELSLLNHWREGRGRAIYICPFKTKITELLKNWKKRFSHLAGGK 1415
E+ L+ A SGKT++AE ++ R + R +Y P K L N K R +
Sbjct: 86 ESVLVSAHTSSGKTVVAEYAIAMSLRSNQ-RVVYTSPIKA-----LSNQKYR-------E 132
Query: 1416 LINAFS--GNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICDDIHEIGN 1473
L++ FS G + D + ++ T + R E ++ I II D+IH + +
Sbjct: 133 LLSEFSDVGLMTGDVTINPTASCLVMTTEILRNMLYRGGEV--VREIHWIIFDEIHYMRD 190
Query: 1474 EIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLGAKKSSIFNFTALE-R 1532
+ G ++E I L K++R+V L + NA +F EW+ +S + + E R
Sbjct: 191 KERGVVWEETIIL-------LPKHVRMVFLSATIPNALEFAEWISHIQSQVVHVVYTEKR 243
Query: 1533 QTPLTVDIETSIL-----VKSPTSNRMALTEIVESSN--------RVASPDETITVFVTD 1579
TPL ++ L K SN ++ + N + + VF
Sbjct: 244 VTPLVHYFRSNKLYKIKDAKFHKSNFLSAMRSIRKRNVGPREVGEAIGDASLPVVVFSFK 303
Query: 1580 RYECVSFATELVG------------LAVAKGIDLLRAEESSLHSYLNKVQDSNLKTLLQS 1627
R +C FA +L G I LR E+ + N+ LL
Sbjct: 304 RKDCERFAMKLDGRYLTDEEARTVQTIFTNAIMSLRKEDREIPII------QNILPLLMR 357
Query: 1628 GIGILYQGMHYSDRNVVRKLHEYKVISILVASR--DCCFDAPSSSFVFVTTTQYFEGREN 1685
GIGI + G+ + VV L + ++ +L A+ + P+ S VF T + F+G
Sbjct: 358 GIGIHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVF-TALKKFDGEAM 416
Query: 1686 RYI 1688
R +
Sbjct: 417 RLV 419
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 103 bits (258), Expect = 2e-21
Identities = 114/432 (26%), Positives = 182/432 (41%), Gaps = 99/432 (22%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
+V + A T AGKT VA + A H R +Y +P+KAL ++ R+F+
Sbjct: 327 SVFVAAHTSAGKTVVAEYAIALAQKHMTR------------TIYTSPIKALSNQKFRDFR 374
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
G+ LTGD L E L+ T E + +D + + +I DE
Sbjct: 375 NTFGDVGL----LTGDVQLHP----EASCLIMTTEILRSMLYSGSDVI--RDLEWVIFDE 424
Query: 629 VHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL-HVPDNGLFYF 686
VH ++D ERG V E ++ +L D + ++ LSAT+PN ++ A ++ + ++
Sbjct: 425 VHYINDVERGVVWEEVLI-MLPDHVS-----IILLSATVPNALEFADWIGRLKRRQIYVI 478
Query: 687 DSTFRPCPLAQQ-YCGITEKNA------LKKKNAMNQACYDKLLEAAKEG---------- 729
+ RP PL + G + K L + A + Y +EA KE
Sbjct: 479 STVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGA 538
Query: 730 ----HQ------------------------VIIFVHSRKDTARTARWLIQ---------- 751
HQ V++F SR A L
Sbjct: 539 KQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKS 598
Query: 752 --KLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSE 809
L + ++ +G+D+ ++L +S+L+ G G+HH+G+ + + E
Sbjct: 599 EIHLFLQRCLARLRGSDRQLPQVLH----------MSELLNRGLGVHHSGILPILKEIVE 648
Query: 810 DLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGR 869
LF+ GL+KVL +T T A GVN+PA TV+ M + S + L P + +QM GRAGR
Sbjct: 649 MLFSRGLVKVLFATETFAMGVNMPARTVVF--DSMRKHDGSTFRDLLPGEYVQMAGRAGR 706
Query: 870 PRYDVNGEGIII 881
D G I++
Sbjct: 707 RGLDPTGTVILL 718
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 103 bits (257), Expect = 3e-21
Identities = 116/428 (27%), Positives = 193/428 (44%), Gaps = 84/428 (19%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
+VL+ A T AGKT VA + +++ + K +V+Y +P+KAL ++ RE
Sbjct: 166 SVLVSAHTSAGKTVVAEYAIAQSLKN------------KQRVIYTSPIKALSNQKYREL- 212
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
L FG V +TGD ++ + LV T E + + ++ + V +I DE
Sbjct: 213 --LAEFG-DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGSEVM--REVAWVIFDE 263
Query: 629 VHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL---HVPDNGLF 684
VH + D ERG V E + +L D R V LSAT+PN ++ A+++ H +
Sbjct: 264 VHYMRDKERGVVWEETII-LLPDKV-----RYVFLSATIPNAMEFAEWICKIHSQPCHIV 317
Query: 685 YFDSTFRPCPLAQQ---------YCGITEKNALKKKNAM-------NQACYD-------- 720
Y + FRP PL Y + EK+ +++N NQ D
Sbjct: 318 Y--TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRG 375
Query: 721 --------------------KLLEAA--KEGHQVIIFVHSRKDTARTARWLIQKLIN-ED 757
K+++ K+ + VI+F S++D A + + N +D
Sbjct: 376 KKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 435
Query: 758 KISAFQGTDKGSLEIL-KTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGL 816
+ A ++ +L +T+ + + L+ G GIHH+GL + + E LF +G
Sbjct: 436 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF 495
Query: 817 LKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNG 876
LKVL +T T + G+N+PA TV+ + ++ WV + +QM GRAGR D G
Sbjct: 496 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV--SGGEYIQMSGRAGRRGLDDRG 553
Query: 877 EGIIITNQ 884
I++ ++
Sbjct: 554 IVIMMIDE 561
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 102 bits (253), Expect = 9e-21
Identities = 112/422 (26%), Positives = 177/422 (41%), Gaps = 78/422 (18%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
+VL+ A T AGKT VA + ++++ K +V+Y P+KAL ++ REF
Sbjct: 168 SVLVSAHTSAGKTVVAEYAIAKSLA------------AKQRVIYTTPIKALSNQKFREFT 215
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
G+ +TGD ++ + L++ T +++ R S + V ++ DE
Sbjct: 216 DEFKDVGL----VTGDVTINPSA---SCLIMTTEILRNMLYRGS---EIMREVGWVVFDE 265
Query: 629 VHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKF---LHVPDNGLF 684
+H + D ERG V E + +L D R V LSAT+PN A++ LH +
Sbjct: 266 IHYMRDKERGVVWEETLI-LLPDNV-----RYVFLSATIPNARQFAEWVCHLHKQPCHVV 319
Query: 685 YFDSTFRPCPLAQQ---------YCGITEKNALKKKNAMNQACYDKLLEAAKEGHQ---- 731
Y D +RP PL + + EK K+ N A +G Q
Sbjct: 320 YTD--YRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAGKGDQKGRH 377
Query: 732 ---------------------------VIIFVHSRKDTARTARWLIQKLINE-DKISAFQ 763
VIIF S+KD A + + N D+
Sbjct: 378 GGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVD 437
Query: 764 GTDKGSLEILKTESSNATD-RSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVS 822
++++L E ++ L+ G GIHH GL + E LF +GL+K L +
Sbjct: 438 EVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFA 497
Query: 823 TATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIIT 882
T T A G+N+PA TV+ + +K W+ + +QM GRAGR D G I++
Sbjct: 498 TETFAMGLNMPARTVLFTAPRKFDGKKFRWI--SSGEYIQMAGRAGRRGLDDKGIVILMI 555
Query: 883 NQ 884
++
Sbjct: 556 DE 557
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 101 bits (251), Expect = 1e-20
Identities = 162/669 (24%), Positives = 280/669 (41%), Gaps = 131/669 (19%)
Query: 283 DIKDIDGFYLQRKIRKQLKNIEETKVQEMANNVYDLLA-----NDISEEELTQNLHDIFG 337
++ D G + + K+ K LK EE+K + + N + N ++E+ T+ L G
Sbjct: 5 ELDDAFGVF-EGKVPKSLK--EESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKLESSVG 61
Query: 338 PDAKQLIRLIVSNRETLYWGHNLQRSANENIDEILGEMAQRNLSHLVEAYKAKP---DSA 394
R + N + N N +++ I N S + + K KP D A
Sbjct: 62 EQESATKRAKIENLKD-----NQDLIPNNDVNGI-----HINNSAVADT-KHKPKIGDIA 110
Query: 395 KRKLNSEPEVGTKKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYE 454
+++E + K E + P+ D + + + V ++ ++S + V +
Sbjct: 111 ADDISNEVSI-----KNEGDTIPEATVADSFEQEASLQVAGKVGMTEAKSSTEEVVELRH 165
Query: 455 EIH----VPPPKKVDDNFPLVQIESLPKWARSAFPTSETT--SLNRIQSEVYPTAFNTDA 508
++ +PP N+ V I +S P + T +L+ Q+ V
Sbjct: 166 QVRHQVSIPP------NYDYVPISK----HKSPIPPARTYPFTLDPFQA-VSIACIERQE 214
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
+VL+ A T AGKT VA V +++ K +V+Y +P+KAL ++ RE
Sbjct: 215 SVLVSAHTSAGKTVVAEYAVAQSLRD------------KQRVIYTSPIKALSNQKYREL- 261
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
L FG V +TGD ++ + T L++ T ++ R S + V +I DE
Sbjct: 262 --LAEFG-DVGLMTGDVTINP---DATCLVMTTEILRSMLYRGS---EVMREVAWVIFDE 312
Query: 629 VHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKF---LHVPDNGLF 684
+H + D ERG V E + +L D + V LSAT+PN + A++ +H +
Sbjct: 313 IHYMRDKERGVVWEETII-LLPD-----KSHFVFLSATIPNAMQFAEWITKIHRQPCHVV 366
Query: 685 YFDSTFRPCPLAQQ---------YCGITEKNALKKKNAMNQACYDKLLEA---------- 725
Y D FRP PL + + EK+ +++N Q L+E
Sbjct: 367 YTD--FRPTPLQHYLFPSGSDGIHLVVDEKSNFREENF--QRAMSALMEKQGDDPAAMAT 422
Query: 726 ---AKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAF--QGTDKGSLEILKTESSNA 780
AK+G V D + + ++ K N + +F + + +L++ K + ++
Sbjct: 423 KGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQ 482
Query: 781 TDRSL-------------------------SDLIPYGFGIHHAGLTKDDRSLSEDLFADG 815
T+R L L+ G GIHH+GL + + E LF +G
Sbjct: 483 TERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 542
Query: 816 LLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVN 875
LLKVL +T T + G+N+PA TV+ + + W+ + +QM GRAGR D
Sbjct: 543 LLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWI--SGGEYIQMSGRAGRRGLDDR 600
Query: 876 GEGIIITNQ 884
G I++ ++
Sbjct: 601 GIVILMIDE 609
>CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 273
Score = 101 bits (251), Expect = 1e-20
Identities = 80/272 (29%), Positives = 132/272 (48%), Gaps = 34/272 (12%)
Query: 623 LIIIDEVHLLHDE-RGPVIESIVARVLR-DTTAEIPTRLVALSATLPNYIDVAKFLHVPD 680
+I++DE+H++ D RG IE ++++VL + +A R++ +SAT+P + K+L
Sbjct: 1 MIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWL---- 56
Query: 681 NGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLL----EAAKEGHQVIIFV 736
+G F++ FRP L +E + + D L+ E+ + Q ++ +
Sbjct: 57 DGAKVFEARFRPIVLQNHIVIGSELRKSGDNKVLREFSEDPLILLTEESFRRNSQTLVMI 116
Query: 737 HSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKT------------ESSNATDRS 784
S+ D +TA + + +K TD LEILK E + DR+
Sbjct: 117 SSKLDAEKTALNIASRFHEINK------TDSSLLEILKERANGLLFIKHGLERNGCKDRN 170
Query: 785 LSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEM 844
+ + +G HHAGLT ++R E F + + +LV+T+TLA GVNLPA V+IK +
Sbjct: 171 VMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIK-AQP 229
Query: 845 YSPEKSDWVMLPPQDILQMLGRAGRPRYDVNG 876
P L + QM+GRAGR + G
Sbjct: 230 RGPS-----ALTSLNYRQMVGRAGRTGHATRG 256
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 98.6 bits (244), Expect = 1e-19
Identities = 113/477 (23%), Positives = 196/477 (40%), Gaps = 93/477 (19%)
Query: 505 NTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQV 564
+ + +VL+ A T AGKT VA + + + +K +V+Y +P+KAL ++
Sbjct: 138 DNNQSVLVSAHTSAGKTVVATYAIAKCLR------------EKQRVIYTSPIKALSNQKY 185
Query: 565 REFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLI 624
RE + G+ +TGD L+ + LV T E + + ++ K V +
Sbjct: 186 RELEEEFKDVGL----MTGDVTLNP----DASCLVMTTEILRSMLYRGSEIM--KEVGWV 235
Query: 625 IIDEVHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL----HVP 679
+ DE+H + D ERG V E + + ++ + LSAT+PN A+++ P
Sbjct: 236 VYDEIHYMRDKERGVVWEETIILMSKNI------KQAFLSATIPNARQFAQWVASIKQQP 289
Query: 680 DNGLFYFDSTFRPCPLAQQYCGITEKNALKKKNAMNQACYDKLLEA-------------- 725
N ++ + +RP PL + + + N + DK +A
Sbjct: 290 VNVVY---TDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSF 346
Query: 726 -----------------------AKEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAF 762
+ +G I+F SRK+ A L N+D
Sbjct: 347 NKRRTGGGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGM 406
Query: 763 -QGTDKGSLEILKTESSNATD-RSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVL 820
+ + ++ L E ++ L+ G G+HH+GL + E LF +GL+KVL
Sbjct: 407 VKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVL 466
Query: 821 VSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGII 880
+T T + G+N+PA TV+ + + SD + + +QM GRAGR D G I+
Sbjct: 467 FATETFSMGLNMPARTVVFTSARKF--DGSDNRYITSGEYIQMAGRAGRRGKDDRGTVIL 524
Query: 881 ITNQSDVRYYLAVLNQQLPIESQMISKVVDNLNAE------IVLGNVTSLDEAVNWL 931
+ + + Q+I D LN++ +VL + AV+W+
Sbjct: 525 MVDSA----------MSADDAKQIIKGATDPLNSQFRLTYNMVLNLMRVEGMAVSWI 571
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 97.8 bits (242), Expect = 2e-19
Identities = 135/550 (24%), Positives = 223/550 (40%), Gaps = 94/550 (17%)
Query: 387 YKAKPDSAKR-------KLNSEPEVGTKKQK---IEAEDEPKVIALDDLKLSQNTKF-LS 435
+K P SA + KL SE K ++ E DEP ++ S L+
Sbjct: 34 WKGPPGSADKAGKRFDGKLQSESTNNGKNKRDVDFEGTDEPIFGKKPRIEESITEDLSLA 93
Query: 436 DVKISLPENSFKRVKDSYEEIHVPPPKKVDDNFPLVQIESLPKWARSAFPTSETTSLNRI 495
D+ + S + V+ E+ +P +D PL P+ ++A L+
Sbjct: 94 DLMPRVKVQSVETVEGCTHEVALPAE---EDYLPLK-----PRVGKAA--KEYPFILDAF 143
Query: 496 QSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAP 555
Q E N + VL+ A T AGKT A + A+ +K +V++ +P
Sbjct: 144 QREAIQCVDNNQS-VLVSAHTSAGKTVCAEYAIALALR------------EKQRVIFTSP 190
Query: 556 LKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDT 615
+KAL ++ RE G+ +TGD ++ LV T E + + ++
Sbjct: 191 IKALSNQKYREMYEEFQDVGL----MTGDVTINPT----ASCLVMTTEILRSMLYRGSEV 242
Query: 616 SFHKLVRLIIIDEVHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAK 674
+ V +I DE+H + D ERG V E + +L D V LSAT+PN A+
Sbjct: 243 M--REVAWVIFDEIHYMRDSERGVVWEETII-LLPDNV-----HYVFLSATIPNARQFAE 294
Query: 675 FL-HVPDNGLFYFDSTFRPCPLAQQYCG---------ITEKNALKKKNAMNQACY----- 719
++ H+ + +RP PL Q Y + ++N +++ N A
Sbjct: 295 WICHLHKQPCHVIYTDYRPTPL-QHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDA 353
Query: 720 DKLLEAAKEGHQ-----------------------VIIFVHSRKDTARTARWLIQKLINE 756
L + ++G + VIIF S+KD A + + N
Sbjct: 354 GDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNT 413
Query: 757 DKISAF-QGTDKGSLEILKTESSNATD-RSLSDLIPYGFGIHHAGLTKDDRSLSEDLFAD 814
D+ + +++ L E + L+ G GIHH GL + E LF++
Sbjct: 414 DEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSE 473
Query: 815 GLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDV 874
GL+K L +T T A G+N+PA TV+ + + W+ + +QM GRAGR D
Sbjct: 474 GLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWI--SSGEYIQMSGRAGRRGMDD 531
Query: 875 NGEGIIITNQ 884
G I++ ++
Sbjct: 532 RGIVILMVDE 541
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 92.0 bits (227), Expect = 9e-18
Identities = 118/464 (25%), Positives = 188/464 (40%), Gaps = 99/464 (21%)
Query: 485 PTSETTSLNRIQSEVYP-----------TAFNTDANVLLCAPTGAGKTNVAMLTVLRAMS 533
PT E T + + YP ++L+ A T AGKT VA + A
Sbjct: 51 PTKEETIHGTLDNPTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMA-- 108
Query: 534 HYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIE 593
+R+++ +V+Y +PLKAL ++ RE Q G+ +TGD LS
Sbjct: 109 --FRDKQ--------RVIYTSPLKALSNQKYRELQHEFKDVGL----MTGDVTLSPN--- 151
Query: 594 ETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHD-ERGPVIESIVARVLRDTT 652
LV T E + + ++ K V +I DE+H + D ERG V E + +
Sbjct: 152 -ASCLVMTTEILRAMLYRGSEVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFL----- 203
Query: 653 AEIPTRLVALSATLPNYIDVAK----------------------------------FLHV 678
++V LSAT+ N + A+ +L V
Sbjct: 204 -PPAIKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFRPTPLQHYAFPMGGGGLYLVV 262
Query: 679 PDNGLFYFDSTFR-----PCPLA----QQYCGITEKNALKKKNAMNQACYDKLLEAAKEG 729
DN F DS + P P + + G + K + K+++ E
Sbjct: 263 DDNEQFREDSFVKMQDTFPKPKSNDGKKSANGKSGGRGAKGGGGPGDSDVYKIVKMIMER 322
Query: 730 --HQVIIFVHSRKDTARTARWLIQKLINEDKIS-AFQGTDKGSLEILKTESSNATDRSLS 786
VIIF SR++ + A + + N D+ + +++ L E DRSL
Sbjct: 323 KFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNNAMQCLNEE-----DRSLP 377
Query: 787 ------DLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIK 840
L+ G +HH+GL + L E LF +GL+K L +T T A G+N+PA TV+
Sbjct: 378 AIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 437
Query: 841 GTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQ 884
+ + + ++ + +QM GRAGR D G II+ ++
Sbjct: 438 AVKKWDGDSHRYI--GSGEYIQMSGRAGRRGKDERGICIIMIDE 479
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 82.8 bits (203), Expect = 6e-15
Identities = 100/409 (24%), Positives = 173/409 (41%), Gaps = 76/409 (18%)
Query: 508 ANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREF 567
++V + A T +GKT VA + + H R +Y +P+KAL ++ +F
Sbjct: 80 SSVFVSAHTSSGKTLVAEYAISLSQIHGTR------------TIYTSPIKALSNQKYHDF 127
Query: 568 QRRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIID 627
+++ G+ +TGD ++ + LV T E + ++ D + ++ D
Sbjct: 128 KQKYDDVGI----ITGDVQVNPA----AKCLVMTTEILRNLVYRNGDLL--RDTEFVVFD 177
Query: 628 EVHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL-HVPDNGLFY 685
EVH ++D ERG V E + + R + LSAT+PN ++ ++++ D ++
Sbjct: 178 EVHYINDSERGVVWEECIIMIPRHIN------FIMLSATIPNSLEFSEWVGRTKDKTIYV 231
Query: 686 FDSTFRPCPLAQ----QYCGITEKNALKKKNAMN-------------QACYDKLLEAA-- 726
++ R PL +C + + K+NA N K+L+ A
Sbjct: 232 ISTSKRAVPLEHVIYCDWCVYSIDDGGGKRNASNFKGDLVPFSKKTRPTGKFKILDVANF 291
Query: 727 ---KEGHQVIIFVHSRKDTARTARWLIQKLINEDKISAFQGTDKGSLEILKTESSNAT-- 781
K+ I F S++ A L +N+ K S E +K S AT
Sbjct: 292 VVKKKLTPAIFFCFSKRKCEDYAEILRTLNLNDTK----------SREEVKLFLSEATRC 341
Query: 782 ----DR------SLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVN 831
DR S+S ++ G +HH L + E LF+ L+K+L++T T A GVN
Sbjct: 342 LSPEDRNLPQVLSMSSMVLNGVAVHHGSLLPFVKECVELLFSMNLVKLLIATETFAMGVN 401
Query: 832 LPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGII 880
+PA + + + + + + +QM GRAGR D G +I
Sbjct: 402 MPAKCCVF--LSLSKIDGGVFRYISSGEYIQMSGRAGRRGMDAVGTVMI 448
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 72.8 bits (177), Expect = 6e-12
Identities = 52/178 (29%), Positives = 91/178 (50%), Gaps = 5/178 (2%)
Query: 732 VIIFVHSRKDTARTARWLIQKLIN--EDKISAFQGTDKGSLEILKTESSNATDRSLSDLI 789
VI+FV S+K L + +N ++K +K + K + + +++
Sbjct: 553 VIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREML 612
Query: 790 PYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEK 849
G +HH GL + + E LF GL+KVL +T T A GVN+PA +V+ GT+ + +
Sbjct: 613 SRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKH--DG 670
Query: 850 SDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDVRYYLAVLNQQLPIESQMISK 907
++ L P + Q GRAGR DV G +II ++S++ ++ + + S++IS+
Sbjct: 671 RNFRDLLPGEYTQCSGRAGRRGLDVTGT-VIILSRSELPDTASLRHMIMGPSSKLISQ 727
Score = 65.1 bits (157), Expect = 1e-09
Identities = 81/295 (27%), Positives = 125/295 (41%), Gaps = 39/295 (13%)
Query: 406 TKKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPEN-SFKRVKDSYEEIHVPPPKK- 463
TKK K + + L++ + N+K S++ LP+ S + S +H P
Sbjct: 197 TKKVKSSNRNFVTIHELNEHLKNVNSKH-SEIDDLLPDKRSIVSLPPSTLNLHKQPDYAH 255
Query: 464 -VDDNFPLVQIESLPKWARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTN 522
VD + P+ + L FP L+ Q E D+ V + A T AGKT
Sbjct: 256 VVDSSAPIENFQQLVPEMALDFPFE----LDNFQKEAIYHLEMGDS-VFVAAHTSAGKTV 310
Query: 523 VAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELT 582
VA + A H K +Y +P+KAL ++ R+F+ + G+ LT
Sbjct: 311 VAEYAIALAQKHMT------------KAIYTSPIKALSNQKFRDFKHKFEDVGI----LT 354
Query: 583 GDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHD-ERGPVIE 641
GD ++ E L+ T E + + D + V +I DEVH ++D ERG V E
Sbjct: 355 GDVQVN----PEGSCLLMTTEILRSMLYRGAD--LIRDVEFVIFDEVHYVNDLERGVVWE 408
Query: 642 SIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFLHVPDNGLFYFDSTF-RPCPL 695
++ + T L+ LSAT+PN + A ++ Y ST RP PL
Sbjct: 409 EVIIMLPPHVT------LILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPL 457
Score = 53.5 bits (127), Expect = 4e-06
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 1349 DTLYHET--ENALICATKGSGKTIMAELSLLNHWREGRGRAIYICPFKTKITELLKNWKK 1406
+ +YH ++ + A +GKT++AE ++ + +AIY P K + +++K
Sbjct: 287 EAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKH-MTKAIYTSPIKALSNQKFRDFKH 345
Query: 1407 RFSHLAGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNIQRIELIICD 1466
+F + G L D + + +L T + R + I+ +E +I D
Sbjct: 346 KFEDV----------GILTGDVQVNPEGSCLLMTTEILRSMLYRGADL--IRDVEFVIFD 393
Query: 1467 DIHEIGNEIIGPMYEIIITRMIFIATQLEKNIRIVGLGTPLANAKDFGEWLG-AKKSSIF 1525
++H + + G ++E +I L ++ ++ L + N K+F W+G KK +I+
Sbjct: 394 EVHYVNDLERGVVWEEVII-------MLPPHVTLILLSATVPNTKEFASWVGRTKKKNIY 446
Query: 1526 NFTALERQTPL 1536
+ L+R PL
Sbjct: 447 VISTLKRPVPL 457
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 72.4 bits (176), Expect = 7e-12
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 732 VIIFVHSRKDTARTARWL--IQKLINEDKISAFQGTDKGSLEILKTESSNATDRSLSDLI 789
+++FV S+K A WL I N++K +K + K + L+
Sbjct: 629 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 688
Query: 790 PYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEK 849
G +HH GL + L E LF+ G +KVL +T T A G+NLP TVI + +
Sbjct: 689 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKH--DG 746
Query: 850 SDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQS 885
+ L P + QM GRAGR D G I++ S
Sbjct: 747 NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNS 782
Score = 58.9 bits (141), Expect = 9e-08
Identities = 87/338 (25%), Positives = 143/338 (41%), Gaps = 49/338 (14%)
Query: 365 NENIDEILGEMAQRN-----LSHLVEAYKAKPDSAKRKLNSEPEVGTKKQKIEAEDEPKV 419
NE+ + E+ Q N L +EA +AK ++ S E + EA +E
Sbjct: 213 NEDQNGQFKELKQLNEIDNELDIRIEANEAKLKEEEKSAKSISEEIME----EATEETTA 268
Query: 420 IALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPKKVDDNFPLVQIESLPKW 479
DD ++ + D + P + VK + HV +NF E +P
Sbjct: 269 DNADDAEIDELLPIGIDFGRTKPVSKSVPVKKEWA--HVVDLNHKIENFD----ELIPNP 322
Query: 480 ARSAFPTSETTSLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREE 539
ARS +P L+ Q E D+ V + A T AGKT VA + AM+H
Sbjct: 323 ARS-WPFE----LDTFQKEAVYHLEQGDS-VFVAAHTSAGKTVVAEYAI--AMAH----- 369
Query: 540 RNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTGDSNLSKQQIEETQLLV 599
RN K +Y +P+KAL ++ R+F+ V + +TGD ++ + L+
Sbjct: 370 RNMT-----KTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN----PDANCLI 418
Query: 600 ATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLLHD-ERGPVIESIVARVLRDTTAEIPTR 658
T E + + D + V +I DEVH ++D +RG V E ++ + + +
Sbjct: 419 MTTEILRSMLYRGAD--LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH------VK 470
Query: 659 LVALSATLPNYIDVAKFL-HVPDNGLFYFDSTFRPCPL 695
+ LSAT+PN + A ++ ++ + RP PL
Sbjct: 471 FILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPL 508
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 72.0 bits (175), Expect = 1e-11
Identities = 48/149 (32%), Positives = 76/149 (50%), Gaps = 19/149 (12%)
Query: 760 SAFQGTDKGSLEILKTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKV 819
S +G+D+ ++L+ +S L+ G G+HHAGL + + E LF G++KV
Sbjct: 683 SRLKGSDRNLPQVLRLQS----------LLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKV 732
Query: 820 LVSTATLAWGVNLPAHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGI 879
L ST T A GVN PA TV+ + + ++ L P + QM GRAGR D G +
Sbjct: 733 LFSTETFAMGVNAPARTVVFDALRKF--DGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVV 790
Query: 880 I-----ITNQSDVRYYLAVLNQQLPIESQ 903
+ + ++SD+R ++ +ESQ
Sbjct: 791 VMCRDEVPDESDLR--RVIVGSATRLESQ 817
Score = 52.8 bits (125), Expect = 6e-06
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 509 NVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQ 568
+V + A T AGKT VA A H R VY AP+K + ++ R+F
Sbjct: 368 SVFVAAHTSAGKTVVAEYAFALATKHCTR------------AVYTAPIKTISNQKYRDFC 415
Query: 569 RRLHHFGVKVAELTGDSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDE 628
+ V LTGD ++ E L+ T E + + D + + +I DE
Sbjct: 416 GKF-----DVGLLTGDVSIR----PEASCLIMTTEILRSMLYRGAD--IIRDIEWVIFDE 464
Query: 629 VHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL-HVPDNGLFYF 686
VH ++D ERG V E ++ + R V LSAT+PN + A ++ +
Sbjct: 465 VHYVNDVERGVVWEEVIIMLPRH------INFVLLSATVPNTFEFADWIGRTKQKEIRVT 518
Query: 687 DSTFRPCPL 695
+T RP PL
Sbjct: 519 GTTKRPVPL 527
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 71.2 bits (173), Expect = 2e-11
Identities = 51/168 (30%), Positives = 79/168 (46%), Gaps = 24/168 (14%)
Query: 732 VIIFVHSRKDTARTARWLIQ------------KLINEDKISAFQGTDKGSLEILKTESSN 779
+++FV SRK A+ L +L + +G+DK ++L
Sbjct: 559 MVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVL------ 612
Query: 780 ATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVII 839
++ DL GF +HH+G+ + + E LF G +K+L +T T A GVN+PA V+
Sbjct: 613 ----TMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVF 668
Query: 840 KGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIITNQSDV 887
+ + ++ ML P + QM GRAGR D+ G III S V
Sbjct: 669 --DSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTV 714
Score = 59.7 bits (143), Expect = 5e-08
Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 407 KKQKIEAEDEPKVIALDDLKLSQNTKFLSDVKISLPENSFKRVKDSYEEIHVPPPKKVDD 466
K + IE+E+ P+ DD K+S+N + +++I + + ++V + + P +K +
Sbjct: 205 KSESIESEETPE----DDKKVSENE--IDEIEIPIIPGNTEKVIEIFGAATEPTKEKFEF 258
Query: 467 NFPLVQIESLPKWARSAFPTSETT---SLNRIQSEVYPTAFNTDANVLLCAPTGAGKTNV 523
LV + PT SL+ Q ++ + A T AGKT V
Sbjct: 259 AQRLVLSADEEDEYKRLVPTMARKYPFSLDPFQQSSV-LCMERGESLFVAAHTSAGKTVV 317
Query: 524 AMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQEQVREFQRRLHHFGVKVAELTG 583
A + +H K + VY +P+KAL ++ R+F++ G+ +TG
Sbjct: 318 AEYAIALCQAH------------KTRAVYTSPIKALSNQKFRDFKQIFGDVGL----VTG 361
Query: 584 DSNLSKQQIEETQLLVATPEKWDVITRKSTDTSFHKLVRLIIIDEVHLL-HDERGPVIES 642
D L E L+ T E + ++ + + ++ DEVH + ++ERG V E
Sbjct: 362 DIQLH----PEAACLIMTTEILRSMLYNGSEVI--RDLEWVVFDEVHYINNEERGHVWEE 415
Query: 643 IVARVLRDTTAEIPTRLVALSATLPNYIDVAKFL-HVPDNGLFYFDSTFRPCPL 695
++ + ++V LSAT+PN ++ A ++ + + + + RP PL
Sbjct: 416 VLIML------PAHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRPVPL 463
>ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1337
Score = 68.9 bits (167), Expect = 8e-11
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 774 KTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLP 833
+T+ TD D++ G G+HHA + + RSL E LF L+VL +T TLA G+N+P
Sbjct: 949 ETKFIKNTDFEFIDMLYRGMGVHHAHMNRKYRSLVEILFRQKHLQVLFATETLALGINMP 1008
Query: 834 AHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIII 881
TV+ G D + L P + QM GRAGR +D G + +
Sbjct: 1009 CRTVVFAG---------DSLQLDPMNYKQMAGRAGRRGFDTLGNVVFM 1047
>At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1171
Score = 63.9 bits (154), Expect = 3e-09
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 792 GFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYSPEKSD 851
G HHAG +S E+LF GL+KV+ +T TLA G+N+PA T +I + + ++
Sbjct: 497 GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVI--SSLSKKAGNE 554
Query: 852 WVMLPPQDILQMLGRAGRPRYDVNGEGIII 881
+ L P ++ QM GRAGR D G +++
Sbjct: 555 RIELGPNELYQMAGRAGRRGIDEKGYTVLV 584
Score = 62.4 bits (150), Expect = 8e-09
Identities = 63/201 (31%), Positives = 97/201 (47%), Gaps = 35/201 (17%)
Query: 503 AFNTDANVLLCAPTGAGKTNVAMLTVLRAMSHYYREERNAFDLKKFKVVYIAPLKALVQE 562
AF ++V++ APT +GKT +A + ++ K ++ Y PLKAL +
Sbjct: 165 AFLRGSSVVVSAPTSSGKTLIAEAAAVSTVA------------KGRRLFYTTPLKALSNQ 212
Query: 563 QVREFQRRLHHFG-VKVAELTGDSNLSKQQIEETQLLVATPE-----KWDVITRKSTDTS 616
+ REF+ FG V LTGDS ++K + Q+++ T E + + S+ T
Sbjct: 213 KFREFRET---FGDDNVGLLTGDSAINK----DAQIVIMTTEILRNMLYQSVGMASSGTG 265
Query: 617 -FHKLVRLIIIDEVHLLHD-ERGPVIESIVARVLRDTTAEIPTRLVALSATLPNYIDVAK 674
FH V I++DEVH L D RG V E IV ++ +L+ LSAT+ N ++A
Sbjct: 266 LFH--VDAIVLDEVHYLSDISRGTVWEEIVIYCPKE------VQLICLSATVANPDELAG 317
Query: 675 FLHVPDNGLFYFDSTFRPCPL 695
++ ST RP PL
Sbjct: 318 WIGEIHGKTELVTSTRRPVPL 338
>CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1714
Score = 61.6 bits (148), Expect = 1e-08
Identities = 41/109 (37%), Positives = 54/109 (48%), Gaps = 9/109 (8%)
Query: 774 KTESSNATDRSLSDLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLP 833
K + + + L L G G HHAGL +R E LF G L VL ST+TL+ GVN+P
Sbjct: 1263 KGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMP 1322
Query: 834 AHTVIIKGTEMYSPEKSDWVMLPPQDILQMLGRAGRPRYDVNGEGIIIT 882
TV+ D + L P QM GRAGR +D +G I ++
Sbjct: 1323 CKTVMF---------GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMS 1362
>Hs6005872_2 [UO] KOG4434 Molecular chaperone SEC63 endoplasmic reticulum
translocon component
Length = 518
Score = 60.8 bits (146), Expect = 2e-08
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 1911 KVFVLLQAHFSGLHLPMDLSLDLSEILSKAPSLAGTMVDILSMNGYL------------- 1957
K VLL +H + + +P L D +L K P+L MV+++ +
Sbjct: 58 KARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPT 117
Query: 1958 --NATTAMDLSQMIVQGVWDTDSPLKQIPFFDTDILEKCKNH---NVETVYDVMALEDEE 2012
+ M LSQM VQG+ SPL Q+P + D L + NH ++T+ D+++L++ +
Sbjct: 118 LASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESD 177
Query: 2013 REDII-TLPENKLNKVAEFVNSYPNIEL 2039
R ++ L + K +V + S+P + +
Sbjct: 178 RHTLLHFLEDEKYEEVMAVLGSFPYVTM 205
>SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1717
Score = 59.3 bits (142), Expect = 7e-08
Identities = 34/90 (37%), Positives = 49/90 (53%), Gaps = 9/90 (10%)
Query: 787 DLIPYGFGIHHAGLTKDDRSLSEDLFADGLLKVLVSTATLAWGVNLPAHTVIIKGTEMYS 846
D + G GIHH+GL + R + E LF G L V+++T TL+ G+N+P TV+ G
Sbjct: 1219 DALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLG----- 1273
Query: 847 PEKSDWVMLPPQDILQMLGRAGRPRYDVNG 876
D + L + Q GRAGR +D+ G
Sbjct: 1274 ----DSLQLNALNFHQAAGRAGRRGFDLLG 1299
>Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 556
Score = 55.5 bits (132), Expect = 9e-07
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 1341 NKVQTEVFDTLYHETENALICATKGSGKTIMAELSLLNHWREGR-GRAIYICPFKTKITE 1399
N Q E+ D + + E+A+I A SGKT + + RE G +Y+ P K+ + +
Sbjct: 308 NAWQQELLDVV-DKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQ 366
Query: 1400 LLKNWKKRFSHL--AGGKLINAFSGNLQHDQKQLAQSHLILATPNEFEYLSRRWPERKNI 1457
+ + RF+ AG L AF+ + H+ + +++ P FE L +K +
Sbjct: 367 VAATVENRFTKTLPAGRTLCGAFTRDYCHN---VLNCQVLITVPECFEILLLAPHRQKWV 423
Query: 1458 QRIELIICDDIHEIGNEIIGPMYEIII 1484
+RI +I D++H +G E+ +E+++
Sbjct: 424 ERIRYVIFDEVHYLGREVGAKFWELLL 450
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,356,202
Number of Sequences: 60738
Number of extensions: 5097156
Number of successful extensions: 17095
Number of sequences better than 1.0e-05: 47
Number of HSP's better than 0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 16453
Number of HSP's gapped (non-prelim): 145
length of query: 2149
length of database: 30,389,216
effective HSP length: 122
effective length of query: 2027
effective length of database: 22,979,180
effective search space: 46578797860
effective search space used: 46578797860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)