ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4523  suspect: LH   A     KOG2253  RNA processing and modification                                U1 snRNP complex, subunit SNU71 and related PWI-motif proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4523 1601674 1599971 -568 
         (568 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR013w [A] KOG2253 U1 snRNP complex subunit SNU71 and related P...   255   1e-67

>YGR013w [A] KOG2253 U1 snRNP complex subunit SNU71 and related PWI-motif
           proteins
          Length = 620

 Score =  255 bits (651), Expect = 1e-67
 Identities = 183/628 (29%), Positives = 290/628 (46%), Gaps = 74/628 (11%)

Query: 1   MDTVLFVSPTLYCCGDTKNWQSQVPKPGYVPILKSDIPKFEQSLKQANSHRD-------- 52
           M  ++FVSP LY     + W+S   K G++PILK+D+ +F+ SLK     R+        
Sbjct: 1   MRDIVFVSPQLYLSSQ-EGWKSDSAKSGFIPILKNDLQRFQDSLKHIVDARNSLSETLLN 59

Query: 53  -HDKGNSVASKTN------------ETDNSDEFKTSTSRYVDLKSFLPISLEQQLHTVCL 99
            +D G+   S  N            + +++++  TS+SRY +LK FLPISL+QQ+HTV L
Sbjct: 60  SNDDGSIHNSDQNTGLNKDKEASIADNNSANKCATSSSRYQELKQFLPISLDQQIHTVSL 119

Query: 100 AHFPLGLGSKGIDKVMDRLDNLIRKKLQVEDNETKFIKQWS-YVDCVNTLTVYISFQESI 158
                      I+ ++D   NL   + Q   N    ++ WS +   ++T  ++I F +  
Sbjct: 120 QGVSSSFSRGQIESLLDHCLNLALTETQ--SNSALKVEAWSSFSSFLDTQDIFIRFSKVD 177

Query: 159 VEE-------YGKAI-QLLEKLFDNGSDGIGLHMDENTRRFVCDLTEGSPAKELDETAKD 210
            +E       Y KA+   + KL ++    I LH+D NT+ +V D T   P+ + ++ +  
Sbjct: 178 EDEAFVNTLNYCKALFAFIRKLHEDFK--IELHLDLNTKEYVEDRTGTIPSVKPEKAS-- 233

Query: 211 EFSALITMLRSEPGSISQEKGLAGNSAVEYNVXXXXXXXXXXXXXXQLCKDIVEFRTRVI 270
           EF ++   +  +    + +K    +S+ +Y V              QLCKDI+EFRT+V+
Sbjct: 234 EFYSVFKNIEDQTDERNSKKEQLDDSSTQYKVDTNTLSDLPSDALDQLCKDIIEFRTKVV 293

Query: 271 TLEKEKRNKELAEEEKRRKQNLKHIFDRIKVTNGGSEKGXXXXXXXXXXXXXXXXXXXXX 330
           ++EKEK+ K   EE +R++  ++ +FD+I+  + G++                       
Sbjct: 294 SIEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAK-----GSANTEEEDTNMEDEDEE 348

Query: 331 XXXXXXXXXKKRVQAERDAQEA--QYESMVHSFQDSLLVQYSSLRQEYQRLQNYETHLQK 388
                    +KR + ERD +E+  +YE M+H    +   +  S+R +    +NYE HL+K
Sbjct: 349 DDTEDDLALEKRKE-ERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEK 407

Query: 389 NKGPMLKELLHLAMDPYHDHHRPYKESESKADEEDRKRESXXXXXXXXXXXXXXXXXXXX 448
           N+   LKELLHLA D ++DHHR +KE E + DEEDR +                      
Sbjct: 408 NRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGK 467

Query: 449 XXXXXXXXXXXVSD---ADATTAAP----KIKLALKKSIGKT------------------ 483
                       S+   AD   +      KIK   KK+I  +                  
Sbjct: 468 AAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPT 527

Query: 484 ----KNXXXXXXXXXXDAFQQKLNLLRESGVVEELVKEYLGVYEPDLVSYIFENIEEHQS 539
               ++          D    +L  L+ES  V+ELV+E+LGVYE +LV YI ENI  +QS
Sbjct: 528 KPSERSAAEDRLPFTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENIRVNQS 587

Query: 540 KQAXXXXXXXXFDEDSPVLVSRIWEAME 567
           KQA        FDED   +  R+W   E
Sbjct: 588 KQALLNELRETFDEDGETIADRLWSRKE 615


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,958,910
Number of Sequences: 60738
Number of extensions: 1136317
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3544
Number of HSP's gapped (non-prelim): 2
length of query: 568
length of database: 30,389,216
effective HSP length: 112
effective length of query: 456
effective length of database: 23,586,560
effective search space: 10755471360
effective search space used: 10755471360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)