ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4556 good A KOG2808 RNA processing and modification U5 snRNP-associated RNA splicing factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4556 1608468 1608013 -152 
         (152 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR006w [A] KOG2808 U5 snRNP-associated RNA splicing factor            64   1e-10
SPCC126.14 [A] KOG2808 U5 snRNP-associated RNA splicing factor         52   4e-07
At1g03140 [A] KOG2808 U5 snRNP-associated RNA splicing factor          51   5e-07
Hs4506123 [A] KOG2808 U5 snRNP-associated RNA splicing factor          47   1e-05
At1g54590 [A] KOG2808 U5 snRNP-associated RNA splicing factor          47   1e-05

>YGR006w [A] KOG2808 U5 snRNP-associated RNA splicing factor
          Length = 219

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 43/109 (39%), Positives = 58/109 (52%), Gaps = 6/109 (5%)

Query: 10  NSQQKPL-NESCNEYIHEILKEWETQESEYTVVPLKRVKVALFPLLVALRKQELGQLQLS 68
           +++ KPL +  CN YIHEIL  W+     Y        K ALFPLL+ LR+ +L    L 
Sbjct: 102 STEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFPLLLQLRRNQLAPDLLI 161

Query: 69  QLARVLDAIVDEDYVR-AKQEYLTLSIGKGKFPIGLTNVG----IHERK 112
            LA VL  +     +  A Q Y+ LSIG   +PIG+T+V     +H RK
Sbjct: 162 SLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVAFMLVVHIRK 210


>SPCC126.14 [A] KOG2808 U5 snRNP-associated RNA splicing factor
          Length = 343

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 35/124 (28%), Positives = 62/124 (49%), Gaps = 5/124 (4%)

Query: 28  LKEWETQESEYTVVPLKRVKVALFPLLVALRKQELGQLQLSQLARVLDAIVDEDYVRAKQ 87
           +  +E+ ES+  +   ++ K  L  L+  +  + L       +A +       ++V+A  
Sbjct: 214 INSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQKHEFVKAND 273

Query: 88  EYLTLSIGKGKFPIGLTNVGIHERKQQLQGSKAQTQENMVLDD---WCVN-IKRLVNFKQ 143
            YL L+IG   +PIG+T VGIHER    Q  +A    N++ D+    C+  +KR + F++
Sbjct: 274 MYLRLTIGNAPWPIGVTMVGIHERSAH-QRLQANPSSNILKDEKKRKCLQALKRFITFQE 332

Query: 144 WTSS 147
             SS
Sbjct: 333 RESS 336


>At1g03140 [A] KOG2808 U5 snRNP-associated RNA splicing factor
          Length = 420

 Score = 51.2 bits (121), Expect = 5e-07
 Identities = 35/117 (29%), Positives = 54/117 (45%), Gaps = 3/117 (2%)

Query: 30  EWETQESEYTVVPLKRVKVALFPLLVALRKQELGQLQLSQLARVLDAIVDEDYVRAKQEY 89
           E  T + +  V   K+    L PL    RK+ L       L  +++  +  DY+ A   Y
Sbjct: 251 ERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIKRDYLAAMDHY 310

Query: 90  LTLSIGKGKFPIGLTNVGIHERKQQ---LQGSKAQTQENMVLDDWCVNIKRLVNFKQ 143
           + L+IG   +PIG+T VGIHER  +      S A    +     +  ++KRL+ F Q
Sbjct: 311 IKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQ 367


>Hs4506123 [A] KOG2808 U5 snRNP-associated RNA splicing factor
          Length = 342

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 44  KRVKVALFPLLVALRKQELGQLQLSQLARVLDAIVDEDYVRAKQEYLTLSIGKGKFPIGL 103
           K+ +  L PL   LRK+ L       +  ++  ++  +YV+A   YL ++IG   +PIG+
Sbjct: 224 KQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGV 283

Query: 104 TNVGIHER 111
           T VGIH R
Sbjct: 284 TMVGIHAR 291


>At1g54590 [A] KOG2808 U5 snRNP-associated RNA splicing factor
          Length = 256

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 37/136 (27%), Positives = 60/136 (43%), Gaps = 12/136 (8%)

Query: 20  CNEYIHEILKEWETQESEYTVVPLKRVKVALF--------PLLVALRKQELGQLQLSQLA 71
           C + + E  +E E  E+      + +  +A F        PL    R + L       L 
Sbjct: 68  CKKLLLEWKQELEAMENTERRTAIGKQMLATFNQCARYLTPLFHLCRNKCLPADIRQGLM 127

Query: 72  RVLDAIVDEDYVRAKQEYLTLSIGKGKFPIGLTNVGIHER----KQQLQGSKAQTQENMV 127
            +++  +  DY+ A  +++ L+IG   +PIG+T VGIHER    K     S A    N  
Sbjct: 128 VMVNCWIKRDYLDATAQFIKLAIGNAPWPIGVTMVGIHERSAREKISTSSSVAHIMNNET 187

Query: 128 LDDWCVNIKRLVNFKQ 143
              +  ++KRL+ F Q
Sbjct: 188 TRKYLQSVKRLMTFCQ 203


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,406,092
Number of Sequences: 60738
Number of extensions: 306612
Number of successful extensions: 961
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 5
length of query: 152
length of database: 30,389,216
effective HSP length: 97
effective length of query: 55
effective length of database: 24,497,630
effective search space: 1347369650
effective search space used: 1347369650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)