ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4560 good J KOG3499 Translation, ribosomal structure and biogenesis 60S ribosomal protein L38
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4560 1610542 1610775 78
(78 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR325c [J] KOG3499 60S ribosomal protein L38 122 7e-29
SPBC577.02 [J] KOG3499 60S ribosomal protein L38 74 3e-14
SPAC30D11.12 [J] KOG3499 60S ribosomal protein L38 70 5e-13
CE20485 [J] KOG3499 60S ribosomal protein L38 65 1e-11
Hs4506645 [J] KOG3499 60S ribosomal protein L38 65 2e-11
At3g59540 [J] KOG3499 60S ribosomal protein L38 62 1e-10
At2g43460 [J] KOG3499 60S ribosomal protein L38 62 1e-10
7289476 [J] KOG3499 60S ribosomal protein L38 62 1e-10
>YLR325c [J] KOG3499 60S ribosomal protein L38
Length = 78
Score = 122 bits (307), Expect = 7e-29
Identities = 60/78 (76%), Positives = 68/78 (86%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
MA+EI DIK+FLEL RR DV +ATVKINKKLNK GK FRQTKFK+RGS LYTL++NDAG
Sbjct: 1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60
Query: 61 KAKKLLQSLPPTFNVNKL 78
KAKKL+QSLPPT VN+L
Sbjct: 61 KAKKLIQSLPPTLKVNRL 78
>SPBC577.02 [J] KOG3499 60S ribosomal protein L38
Length = 74
Score = 74.3 bits (181), Expect = 3e-14
Identities = 41/78 (52%), Positives = 54/78 (68%), Gaps = 8/78 (10%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M ++I+DIK+FLE+ RR+D SA +K K NK+ KFKLR S+YLYTL+V DA
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIK--KNTNKD------VKFKLRCSKYLYTLVVADAK 52
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA+KL QSLPP V ++
Sbjct: 53 KAEKLRQSLPPDLTVTEV 70
>SPAC30D11.12 [J] KOG3499 60S ribosomal protein L38
Length = 74
Score = 70.1 bits (170), Expect = 5e-13
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M +++ DIK FL+L R D SA VK N+ + KFKLR SRYLYTL+V DA
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQN--------KAVKFKLRCSRYLYTLVVADAK 52
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA+KL QSLPP V ++
Sbjct: 53 KAEKLRQSLPPALTVTEV 70
>CE20485 [J] KOG3499 60S ribosomal protein L38
Length = 70
Score = 65.5 bits (158), Expect = 1e-11
Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 9/78 (11%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M KEI +IK+FL RR+D S VKI K N TKFK+R + YLYTL+V D
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKS--VKIKKNSNN-------TKFKVRCASYLYTLVVADKD 51
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA+KL QSLPP V +L
Sbjct: 52 KAEKLKQSLPPGIQVKEL 69
>Hs4506645 [J] KOG3499 60S ribosomal protein L38
Length = 70
Score = 64.7 bits (156), Expect = 2e-11
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 9/78 (11%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M ++I +IK+FL RR+D S +K NK KFK+R SRYLYTL++ D
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKD---------NVKFKVRCSRYLYTLVITDKE 51
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA+KL QSLPP V +L
Sbjct: 52 KAEKLKQSLPPGLAVKEL 69
>At3g59540 [J] KOG3499 60S ribosomal protein L38
Length = 69
Score = 62.0 bits (149), Expect = 1e-10
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M K+I +IK+FL RR+D S +K +K + KFK+R SRYLYTL V D
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDI---------VKFKVRCSRYLYTLCVFDQE 51
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA KL QSLPP +V L
Sbjct: 52 KADKLKQSLPPGLSVQDL 69
>At2g43460 [J] KOG3499 60S ribosomal protein L38
Length = 69
Score = 62.0 bits (149), Expect = 1e-10
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M K+I +IK+FL RR+D S +K +K + KFK+R SRYLYTL V D
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDI---------VKFKVRCSRYLYTLCVFDQE 51
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA KL QSLPP +V L
Sbjct: 52 KADKLKQSLPPGLSVQDL 69
>7289476 [J] KOG3499 60S ribosomal protein L38
Length = 70
Score = 62.0 bits (149), Expect = 1e-10
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYTLIVNDAG 60
M +EI ++K+FL RR D + +K N TKFK+R SR+LYTL+V D
Sbjct: 1 MPREIKEVKDFLNKARRSDARAVKIKKNPT---------NTKFKIRCSRFLYTLVVQDKE 51
Query: 61 KAKKLLQSLPPTFNVNKL 78
KA K+ QSLPP V ++
Sbjct: 52 KADKIKQSLPPGLQVKEV 69
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,076,718
Number of Sequences: 60738
Number of extensions: 129288
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 30,389,216
effective HSP length: 54
effective length of query: 24
effective length of database: 27,109,364
effective search space: 650624736
effective search space used: 650624736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)