ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4567  suspect: LH   R     KOG3669  General function prediction only                               Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4567 1612956 1611379 -526 
         (526 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7293668 [R] KOG3669 Uncharacterized conserved protein contains d...    52   2e-06

>7293668 [R] KOG3669 Uncharacterized conserved protein contains dysferlin
           TECPR and PH domains
          Length = 823

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 20/121 (16%)

Query: 280 PIRFTYVLYENQRRWLGI-GWTANMLTYERSSWTDEFLNEAPSPEQFKLPEEASGMAWRW 338
           PIR     YEN+R WL I G++  +L  +R  ++    +     ++ +LP     MAW+W
Sbjct: 64  PIRIREESYENER-WLPIEGFSKTLLPTDRYRYSSADGSVERGVDKIRLPS----MAWQW 118

Query: 339 VDKTWRLDMTNDGAIQLSSTRPKTTASPGADDGFIYYDNTWKKPSTEDSFSKYTRRRRWI 398
            D  W LD+  DG              P  +DG++Y  +     S + S++ Y RRR+W+
Sbjct: 119 -DGDWHLDLELDG-------------QPLTEDGWMYALDFPATYSAKKSWNSYVRRRKWV 164

Query: 399 R 399
           R
Sbjct: 165 R 165


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,445,911
Number of Sequences: 60738
Number of extensions: 1442297
Number of successful extensions: 6689
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6689
Number of HSP's gapped (non-prelim): 1
length of query: 526
length of database: 30,389,216
effective HSP length: 111
effective length of query: 415
effective length of database: 23,647,298
effective search space: 9813628670
effective search space used: 9813628670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)