ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4577 good BK KOG2656 Chromatin structure and dynamics DNA methyltransferase 1-associated protein-1
r_klactIII4577 good BK KOG2656 Transcription DNA methyltransferase 1-associated protein-1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4577 1616549 1618039 497
(497 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR002c [BK] KOG2656 DNA methyltransferase 1-associated protein-1 382 e-106
SPAC9G1.13c [BK] KOG2656 DNA methyltransferase 1-associated prot... 108 2e-23
CE25166 [BK] KOG2656 DNA methyltransferase 1-associated protein-1 93 1e-18
Hs13123776 [BK] KOG2656 DNA methyltransferase 1-associated prote... 79 2e-14
At2g47210 [BK] KOG2656 DNA methyltransferase 1-associated protein-1 77 6e-14
7302347 [BK] KOG2656 DNA methyltransferase 1-associated protein-1 69 1e-11
>YGR002c [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 476
Score = 382 bits (981), Expect = e-106
Identities = 223/522 (42%), Positives = 286/522 (54%), Gaps = 71/522 (13%)
Query: 1 MSSSDIFDVLNIRPKSSSPDAEAQTPTPSSGTVKHNKPQVTGIQRELYSLLGDNTPTVPI 60
MSSSDIFDVLNI+ KS SP Q PSS KPQVTG+QREL++LLG+N P V I
Sbjct: 1 MSSSDIFDVLNIKQKSRSP-TNGQVSVPSSSAANRPKPQVTGMQRELFNLLGENQPPVVI 59
Query: 61 KQGNKFKDSLNSNIKPSPWSFVEFEANSHLKLRHWVKGSKELVGATVEPSSFAKFNQHLT 120
K GN FK+ + S KPSPWSFVEF+AN+ + LRHWVKGSKEL+G T + S ++KFNQHL+
Sbjct: 60 KSGNNFKEKMLSTSKPSPWSFVEFKANNSVTLRHWVKGSKELIGDTPKESPYSKFNQHLS 119
Query: 121 IPSFDEQEFQQFMNGN-------------------------NSEWKYGEVQYLFDLCRNY 155
IPSF ++E++ FMN N + W + E++YLF+LC+ Y
Sbjct: 120 IPSFTKEEYEAFMNENEGTQKSVESEKNHNENFTNEKKDESKNSWSFEEIEYLFNLCKKY 179
Query: 156 DMKWFVIADRFNYNGTERKLDDLKEMFYTVCQWYFLYKDPDNPLISQLNFPXXXXXXXXX 215
D++WF+I DR++YN + R L+DLKE FY C+ YF DP NPL+S LNF
Sbjct: 180 DLRWFLIFDRYSYNNS-RTLEDLKEKFYYTCRNYFKASDPSNPLLSSLNFSAEKEIERKK 238
Query: 216 XXXXXXXXTXXXXXXXXXXXXXSRKFEMAAKKTLQEREALLQLLDHPHSDKPISQFLTSQ 275
+ S+KFEMAAK+TL ERE+LL+LLD PHSD+ I+Q+LTSQ
Sbjct: 239 YLQRLLSRSAAEIAEEEALVVESKKFEMAAKRTLAERESLLRLLDSPHSDQTITQYLTSQ 298
Query: 276 GMSQLYANLLNDKNRKRKPDSNTPENPWMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 335
GMSQLY LL DK RKRK D N PENPWMK
Sbjct: 299 GMSQLYNALLADKTRKRKHDLNIPENPWMK-------------------------QQQQF 333
Query: 336 XXXXXXXXXXXXXXXXXXXXXXXTSKDQQPSENIEVKTEGQRLNKKQKIELQNALRRKQD 395
+K Q+ +K + + +Q ++ N+ RK
Sbjct: 334 AQHRQLQQLNVKKSEVKENLSPKKTKRQRQEMQTALKRKSESAYAEQLLKDFNSDERK-- 391
Query: 396 SEYAEHLLEKFTLEERKALGVIAHGEKLAPGVYLRSSKISTYKPAVQNKIVATLQELGLP 455
L T E+ + GV KL+ T+KPA+QNKI+A LQEL LP
Sbjct: 392 ------ALGVITHGEKLSPGVYLRSTKLS-----------TFKPALQNKILAILQELSLP 434
Query: 456 VRPAMPSLEVVQEHEKLLKKIATLLELKKQVDKLTAEKQIVK 497
RP MPS +V++ E+LLKKI TL++LKK VDK A I K
Sbjct: 435 SRPVMPSFDVMERQEELLKKINTLIDLKKHVDKYEAGMSITK 476
>SPAC9G1.13c [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 411
Score = 108 bits (270), Expect = 2e-23
Identities = 84/305 (27%), Positives = 133/305 (43%), Gaps = 53/305 (17%)
Query: 1 MSSSDIFDVLNIRPKSSSPDAEAQTPTPSSGTVKHNKPQVTGIQRELYSLLGDNTPTVPI 60
M+S+DI DV + P +++TPT +P+ GI RELYSLLG+N+ + I
Sbjct: 1 MTSADIRDVFELPPPEIGNKQKSKTPT-------ERRPE--GISRELYSLLGENSAPLAI 51
Query: 61 KQGNKFKDSLNSNIKPSPWSFVEFEANSH---LKLRHWVKGSKELVGATVEPSSFAKFNQ 117
Q KFK+ + K W F +S L HWV S+
Sbjct: 52 YQ-KKFKEKPKVSHKAKNWVRQPFSISSRKDDFTLHHWVLKSE----------------- 93
Query: 118 HLTIPSFDEQEFQQFMNGNNSEWKYGEVQYLFDLCRNYDMKWFVIADRFNYN--GTERKL 175
D + ++ +W E YLF LC++YD+++FVIADR++ R L
Sbjct: 94 ------VDSEAYE--------DWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKKHRTL 139
Query: 176 DDLKEMFYTVCQWYFLYKDPDN-------PLISQLNFPXXXXXXXXXXXXXXXXXTXXXX 228
+DLK+ FY+V + L ++P N L++ + + T
Sbjct: 140 EDLKDRFYSVSRKILLARNPINSMTAAQSSLLNTMEYNKEQEVIRKKYLIGLASRTPEEV 199
Query: 229 XXXXXXXXXSRKFEMAAKKTLQEREALLQLLDHPHSDKPISQFLTSQGMSQLYANLLNDK 288
++ E + K L +R+ +L+LLD D I ++ TS GMS L +++N +
Sbjct: 200 AEEEALFIELKRIETSQAKLLSDRDEVLRLLDEQKGDGGIHEYHTSAGMSSLIQDMINSQ 259
Query: 289 NRKRK 293
K K
Sbjct: 260 RTKNK 264
Score = 58.2 bits (139), Expect = 3e-08
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 415 GVIAHGEKLAPGVYLRSSKISTYKPAVQNKIVATLQELGLPVRPAMPSLEVVQEHEKLLK 474
G+ H EKL PG ++RS KI K ++ ++ + + ELG+ R MP+ + ++ +L
Sbjct: 309 GITWH-EKLHPGTFVRSQKIPAIKASLSQRVSSVMTELGVSSRLIMPTAKNFEKFVELQN 367
Query: 475 KIATLLELKKQVDKLTAEKQI 495
I +LLELK++VD+L+ E +I
Sbjct: 368 SIVSLLELKRKVDRLSQETEI 388
>CE25166 [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 562
Score = 92.8 bits (229), Expect = 1e-18
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 6 IFDVLNIRPKSSSPDAEAQTPTPSSGTVKHNKPQVTGIQRELYSLLG--DNTPTVPIKQG 63
I DV I + +P + P P GT KP+ G++REL++L+ D T +P
Sbjct: 2 IGDVHQILQSTEAPKDATKKP-PKPGTSAPRKPE--GMKRELFNLMSGKDLTAVMPTDVK 58
Query: 64 NKFKDSLNS---NIKPSPWS-FVEFEANSHLKLRHWVKGSKELVGATVEPSSFAKFNQHL 119
+K + +++ W F + L L HWV+ K ++P F++FN+ +
Sbjct: 59 KTYKQKFQTGFRSVRKYKWMPFTNESRDDGLMLHHWVRADKV---EAMQPYPFSRFNKVI 115
Query: 120 TIPSFDEQEFQQFMNGNNSEWKYGEVQYLFDLCRNYDMKWFVIADRFNYN--GTERKLDD 177
IP + + E++ ++ ++W E YLFD CR +D++W ++ DRF+ R ++D
Sbjct: 116 DIPIYTDDEYENYLK--IAKWSREETDYLFDTCRMFDLRWPIVYDRFDCKKFNQNRTVED 173
Query: 178 LKEMFYTVCQWYFLYKDPDN 197
LKE FY++ + +DP +
Sbjct: 174 LKERFYSITYELGILRDPSS 193
>Hs13123776 [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 467
Score = 79.0 bits (193), Expect = 2e-14
Identities = 52/169 (30%), Positives = 90/169 (52%), Gaps = 21/169 (12%)
Query: 29 SSGTVKHNKPQVTGIQRELYSLL----GDNTPTVPIKQGNKF---KDSLNSNIKPSPWSF 81
SS T+ +P+ G+ RE+Y+LL D P +P G + K L S K PW +
Sbjct: 41 SSETLTFKRPE--GMHREVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSK-KVRPWKW 97
Query: 82 VEFEANSH---LKLRHWVKGSKELVGATVEPSSFAKFNQHLTIPSFDEQEFQQFMNGNNS 138
+ F + HW + ++E + FA+FN+ + +P + EQE+Q +++ +
Sbjct: 98 MPFTNPARKDGAMFFHWRRAAEE-----GKDYPFARFNKTVQVPVYSEQEYQLYLH--DD 150
Query: 139 EWKYGEVQYLFDLCRNYDMKWFVIADRFNYNG-TERKLDDLKEMFYTVC 186
W E +LFDL R +D+++ VI DR+++ +R ++DLKE +Y +C
Sbjct: 151 AWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 199
>At2g47210 [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 486
Score = 77.0 bits (188), Expect = 6e-14
Identities = 56/188 (29%), Positives = 94/188 (49%), Gaps = 19/188 (10%)
Query: 1 MSSSDIFDVLNIRPKSSSPDAEAQTPTPSSGTVKHNKPQVTGIQRELYSLLGDNTPTVPI 60
M +D D+L + PK+ + + P + H KP GI RE+Y+L G P +P
Sbjct: 1 MGGTDAKDILGL-PKTPLSLTQEKKSRPQKES--HRKPD--GISREVYALTGGVAPLMP- 54
Query: 61 KQGNKFKDSLNSNIKPSPWSFVEFEANSHLKLRHWVKGSKELVGATVEPS---SFAKFNQ 117
K + + + SF L+L HWV+ V V P+ SFAK+N+
Sbjct: 55 SIDLKRRPPADEKVAWKWLSFTNSARKDDLQLYHWVR-----VVNDVPPTGDYSFAKYNK 109
Query: 118 HLTIPSFDEQEFQQFMNGNNSEWKYGEVQYLFDLCRNYDMKWFVIADRFNYNGTERKLDD 177
+ I + ++E++ + +S W E LF+ C+N+D+++ VIADRF R +++
Sbjct: 110 SVDILKYTDEEYENHLT--DSVWTKEETDQLFEFCQNFDLRFVVIADRF---PVSRTVEE 164
Query: 178 LKEMFYTV 185
LK+ +Y+V
Sbjct: 165 LKDRYYSV 172
>7302347 [BK] KOG2656 DNA methyltransferase 1-associated protein-1
Length = 433
Score = 69.3 bits (168), Expect = 1e-11
Identities = 56/202 (27%), Positives = 98/202 (47%), Gaps = 26/202 (12%)
Query: 3 SSDIFDVLNIRPKSSSP----DAEAQTPTPSSGTVKHNKPQVTGIQRELYSLL----GDN 54
S+D+ D+L++ ++++P D+ T + K + G+ RE+++LL D
Sbjct: 2 SADVRDILDME-RANTPEVTRDSFLATKKRNFERTKTASRRPEGMHREVFALLYTDKKDA 60
Query: 55 TPTVP------IKQGNKFKDSLNSNIKPSPWSFVEFE---ANSHLKLRHWVKGSKELVGA 105
P +P I G K + K W + F N HW + + +
Sbjct: 61 PPLLPTDTALGIGAGYKETKARLGMKKVRKWEWAPFSNPARNDSAVFHHWKRVTDN---S 117
Query: 106 TVEPSSFAKFNQHLTIPSFDEQEFQQFMNGNNSEWKYGEVQYLFDLCRNYDMKWFVIADR 165
T P FAKFN+ L +PS+ E+ + N + W + +LFDL R +D+++ V+ADR
Sbjct: 118 TDYP--FAKFNKQLEVPSYTMTEYNAHLRNNINNWSKVQTDHLFDLARRFDLRFIVMADR 175
Query: 166 FN--YNGTERKLDDLKEMFYTV 185
+N +GT + +++LKE +Y V
Sbjct: 176 WNRQQHGT-KTVEELKERYYEV 196
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,096,423
Number of Sequences: 60738
Number of extensions: 1091518
Number of successful extensions: 2757
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2738
Number of HSP's gapped (non-prelim): 9
length of query: 497
length of database: 30,389,216
effective HSP length: 111
effective length of query: 386
effective length of database: 23,647,298
effective search space: 9127857028
effective search space used: 9127857028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)