ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII4594  suspect: LH   S     KOG4674  Function unknown                                               Uncharacterized conserved coiled-coil protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII4594 1622747  1624837 697  
         (697 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c [S] KOG4674 Uncharacterized conserved coiled-coil pr...    54   8e-07

>SPCC162.08c [S] KOG4674 Uncharacterized conserved coiled-coil protein
          Length = 1837

 Score = 53.9 bits (128), Expect = 8e-07
 Identities = 132/675 (19%), Positives = 255/675 (37%), Gaps = 94/675 (13%)

Query: 82   RILEVALRETASEETLNKYLPQIRDIIXXXXXXXXXXQAMI-KLSRNEDALKYQHTPQRX 140
            RILE++     +   L++    +R +           Q ++ +L  N   LK   T QR 
Sbjct: 840  RILELSNDLRVANSKLSECSDDVRRLTLQNSFDLREHQTLVLQLQSNITELKQDITLQRT 899

Query: 141  XXXXXXXATTSL--------------------AGAGPTSTSAHIETKQIPTLEVPKGSES 180
                    TT L                    A    T    ++E + I ++E+ +  E 
Sbjct: 900  VRNQLEIQTTELKERLKFMEERQENLQSKLIAANKDTTQNPDNVEVEAI-SIELERTKEK 958

Query: 181  DALTQLKKGNNLQRRASKRFSAYHMAKLANQTASDPSNSPTSKNLAVPXXXXXXXXXNVS 240
              + +L+K N  Q+  +   +   M +   Q      +  +++   +          N  
Sbjct: 959  LRMAELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLN-K 1017

Query: 241  DTESIKMERQPSRISSASSVD--YHPMTGAPEPKGD----NSSIDEIVVFLKIG-EKVKR 293
              E +K E++ S    A  ++        A   K D     S  D ++  LK   EK + 
Sbjct: 1018 RVEVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKERS 1077

Query: 294  CVTSSHLSFN-----------KLRLLFVEKFAYSPGGDVFPDIYVKEPKYEAFYELEESH 342
             +   H ++            KLR L  E          F ++  K  K +A +E + S 
Sbjct: 1078 LMKECHSNYESEIVSHGRTTQKLRDLRTE----------FDEVNTKYLKLKANFEQQHSG 1127

Query: 343  LHGIIDGXXXXXXXXXXXXDEQFRQLQDGLL--EKQ--------DTIFQNLKEIIQNSTH 392
            L     G            +++   L+D +L  E Q        D++ Q +  + QNS+ 
Sbjct: 1128 L----SGAEKDWNIQRKAMEDEISSLKDYILGLENQNKLLHSQFDSLSQQITVLQQNSSE 1183

Query: 393  VXXXXXXXXXXXXXXAT--VIHEDHRKEVAHIRHEITVLKQIHSDQK-RSLQNTINAIVE 449
                               V +  H KE+   ++E+T+L     +Q+ +SLQ+T++++  
Sbjct: 1184 NLNISANLEAVQDNDLRELVSYLRHEKEIMDNKYELTILDNRGLNQQVKSLQSTVDSLQL 1243

Query: 450  KLQKFQSLSITTGK--------SANRDYMEKSQSKLSEVSDNLLSKVDDLQDVIEALRKD 501
            +L + QSL ++  +        S     + +S S L + +D  L K+ +L+  +E L   
Sbjct: 1244 ELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNAS 1303

Query: 502  VAIRGARTPKKKIENVSSELDSAKKDLDQMRNYIDVEKPNWKTIWEAELDRV--CEEQQF 559
            +        + +I  + +E+ +    L+ M+ Y       WK  +++ L++    +  Q 
Sbjct: 1304 L-----NPLQTEINELKAEIGAKTASLNLMKEY----NSRWKLRFQSVLNKYERVDPTQL 1354

Query: 560  MTLQ---EDLVFDLQEDLNKVMETFDLVKLCCEQQEKAPKKNKGNPILPIAKPGTYNMIR 616
              L+   E L  + QE   K+ ET        +QQ  +  +   N    + +  T N   
Sbjct: 1355 EELKKNCEALEKEKQELETKLQETAKETD-TFKQQVNSLNEEVENLKKEVEQANTKNTRL 1413

Query: 617  DQVLTE-VQNLNPDHDSRVEAIKKAEKLRNREKEYK--ENEAFEDELGNFVEKGNFKKAG 673
                 E  +NL     +R   +K+    +N+E   K  ENEA + E+ +  +  +  +  
Sbjct: 1414 AAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQES 1473

Query: 674  GIEEIERLRKQKDEE 688
               + E++ K++ E+
Sbjct: 1474 ASSDAEQITKEQFEQ 1488


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,611,067
Number of Sequences: 60738
Number of extensions: 1545301
Number of successful extensions: 4965
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4961
Number of HSP's gapped (non-prelim): 5
length of query: 697
length of database: 30,389,216
effective HSP length: 113
effective length of query: 584
effective length of database: 23,525,822
effective search space: 13739080048
effective search space used: 13739080048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)