ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4600 good LB KOG1005 Chromatin structure and dynamics Telomerase catalytic subunit/reverse transcriptase TERT
r_klactIII4600 good LB KOG1005 Replication, recombination and repair Telomerase catalytic subunit/reverse transcriptase TERT
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4600 1627450 1624868 -861
(861 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR318w [LB] KOG1005 Telomerase catalytic subunit/reverse transc... 550 e-156
SPBC29A3.14c [LB] KOG1005 Telomerase catalytic subunit/reverse t... 155 2e-37
Hs4507439 [LB] KOG1005 Telomerase catalytic subunit/reverse tran... 125 4e-28
At5g16850 [LB] KOG1005 Telomerase catalytic subunit/reverse tran... 83 2e-15
ECU09g0310 [LB] KOG1005 Telomerase catalytic subunit/reverse tra... 81 6e-15
>YLR318w [LB] KOG1005 Telomerase catalytic subunit/reverse transcriptase
TERT
Length = 884
Score = 550 bits (1418), Expect = e-156
Identities = 322/886 (36%), Positives = 486/886 (54%), Gaps = 65/886 (7%)
Query: 1 MKILVEYLES-----LECYETLRKSDILINADSNGVSNLLLSCFAQVNSKH----CVPPE 51
MKIL E+++ L+ T +++ L NG+ +L +CFA NS+ C+P +
Sbjct: 1 MKILFEFIQDKLDIDLQTNSTYKEN--LKCGHFNGLDEILTTCFALPNSRKIALPCLPGD 58
Query: 52 IEISSTFSSSYHCETIETCILYLLHKNFTNNILTYGYQLGKNSDVMTKLFCRSSNISVSV 111
+ H I+ CI+YLL NN+LT+GY++ +N DV LFC S+N++V++
Sbjct: 59 LS---------HKAVIDHCIIYLLTGELYNNVLTFGYKIARNEDVNNSLFCHSANVNVTL 109
Query: 112 LKCNSWRLFHQLVGTDNFVNLLINYSVYFNTGHYFRQIIGTPANAPQVPPAWLDRSYRRE 171
LK +W++FH LVGT FV+LLINY+V G +F QI+G N P +PP W+ RS
Sbjct: 110 LKGAAWKMFHSLVGTYAFVDLLINYTVIQFNGQFFTQIVGNRCNEPHLPPKWVQRSSSSS 169
Query: 172 RNT-----------------KLTIDWNSAL-YHKIRPQDYKNIIETDQGLLIAEIFPKIS 213
KL I+ +S Y KI P TD L IFP +
Sbjct: 170 ATAAQIKQLTEPVTNKQFLHKLNINSSSFFPYSKILPSSSSIKKLTD---LREAIFP--T 224
Query: 214 ESSKTPRSLNFALNNLKPILYELIRAHERFSYRHIINNICPK--------SDTFYSSPKS 265
K P+ L +N L +L++ H+R +Y I+N+ICP S SPK
Sbjct: 225 NLVKIPQRLKVRINLT---LQKLLKRHKRLNYVSILNSICPPLEGTVLDLSHLSRQSPKE 281
Query: 266 -VIKLLIVCVRKTFPLDLLGSNSNYSVLSKAIAILVKKPLHSKILFDELCKGLRVKDVKW 324
V+K +IV ++K P ++ GS N + K + +L+ PL+ + FD L K LR+KD +W
Sbjct: 282 RVLKFIIVILQKLLPQEMFGSKKNKGKIIKNLNLLLSLPLNGYLPFDSLLKKLRLKDFRW 341
Query: 325 LETRRLPAGEQTQKIPYYDVKNRQALLYKLFFWILSCYVPKLLSTFFYVTELSSTVDIVY 384
L + ++ +N L W+ +PK++ TFFY TE+SSTV IVY
Sbjct: 342 LFISDI-------WFTKHNFENLNQLAICFISWLFRQLIPKIIQTFFYCTEISSTVTIVY 394
Query: 385 IRHDTWKTMSQPFLKSYFRRYLLENKYCFQHRSFTESKFNHRNLRLIPKKSGLDFRIIAV 444
RHDTW + PF+ YF+ YL+EN C H S+T S FNH +R+IPKKS +FRIIA+
Sbjct: 395 FRHDTWNKLITPFIVEYFKTYLVENNVCRNHNSYTLSNFNHSKMRIIPKKSNNEFRIIAI 454
Query: 445 PCKGVNIQEFNEFNDYVTNALKPTKIILERLRMRRNTKFTKAFSPLEIPKIVLSYKQRLL 504
PC+G + +EF + + NA++PT+ ILE LR +R T FTK +SP +I + +KQRLL
Sbjct: 455 PCRGADEEEFTIYKENHKNAIQPTQKILEYLRNKRPTSFTKIYSPTQIADRIKEFKQRLL 514
Query: 505 LKHGKI-PNLYLLKFDIQSCYDSIPVQKVMKLVEARICEEQQFFIRSQDILTTASTRLKR 563
K + P LY +KFD++SCYDSIP + M++++ + E FF+RSQ T + LK
Sbjct: 515 KKFNNVLPELYFMKFDVKSCYDSIPRMECMRILKDALKNENGFFVRSQYFFNTNTGVLKL 574
Query: 564 LHAVNGDIQFQENDLVIDSVKTTVLSKEDVLTVVKMELFKTSIFYRGKCYLRKDGLFQGT 623
+ VN + +L ID+V+T LS +DV+ VV+ME+FKT+++ KCY+R+DGLFQG+
Sbjct: 575 FNVVNASRVPKPYELYIDNVRTVHLSNQDVINVVEMEIFKTALWVEDKCYIREDGLFQGS 634
Query: 624 PLSSVLVDILYDDLLEFYTEFTDENDSDPMIIRLVDDFLIVSTSKKYIERLNNLAQTGFK 683
LS+ +VD++YDDLLEFY+EF D +I++L DDFLI+ST ++ + + LA GF+
Sbjct: 635 SLSAPIVDLVYDDLLEFYSEFKASPSQDTLILKLADDFLIISTDQQQVINIKKLAMGGFQ 694
Query: 684 SFNTYINPQKVLVXXXXXXXXXNVPFCALQLNLRTLEVWKDRSSYNVLGTVLGSSKQLYN 743
+N N K+L + FCA+ + ++ LEVWK S+ N SSK ++
Sbjct: 695 KYNAKANRDKILAVSSQSDDDTVIQFCAMHIFVKELEVWKHSSTMNNFHIRSKSSKGIFR 754
Query: 744 KLLWIFEMRLSYNMLDERLNSWETAARFLREVALNVIQSFIVLFNRKKSSRRSFKQFVFN 803
L+ +F R+SY +D LNS T + V N+ + + F + QF
Sbjct: 755 SLIALFNTRISYKTIDTNLNSTNTVLMQIDHVVKNISECYKSAFKDLSINVTQNMQFHSF 814
Query: 804 IFQRIDLNLSSANMFSMEKSV--ASKELVLSVFLEQLKLRKNAFAD 847
+ + I++ +S + + + + +L+ FLE L + F D
Sbjct: 815 LQRIIEMTVSGCPITKCDPLIEYEVRFTILNGFLESLSSNTSKFKD 860
>SPBC29A3.14c [LB] KOG1005 Telomerase catalytic subunit/reverse transcriptase
TERT
Length = 988
Score = 155 bits (393), Expect = 2e-37
Identities = 159/744 (21%), Positives = 303/744 (40%), Gaps = 104/744 (13%)
Query: 65 ETIETCILYLLHKNFTN--NILTYGYQLGKN-------SDVMTKLFCRSSNISVSVLKCN 115
E I + + ++F N+L G+ + + V L N +S+L+
Sbjct: 86 ELIANVVKQMFDESFERRRNLLMKGFSMNHEDFRAMHVNGVQNDLVSTFPNYLISILESK 145
Query: 116 SWRLFHQLVGTDNFVNLLINYSVY-FNTGHYFRQIIGTPANAPQVPPAWLDRSYRRERNT 174
+W+L +++G+D LL S++ + QI G P V + + +R T
Sbjct: 146 NWQLLLEIIGSDAMHYLLSKGSIFEALPNDNYLQISGIPLFKNNVFEETVSKKRKRTIET 205
Query: 175 KLT--------IDWNS-----------ALYHKIRPQDYKN-------------------- 195
+T + WNS + Y K + Y N
Sbjct: 206 SITQNKSARKEVSWNSISISRFSIFYRSSYKKFKQDLYFNLHSICDRNTVHMWLQWIFPR 265
Query: 196 ---IIETDQGLLIAEIFPKISESSKTPRSLNFALNNLKPILYELIRAHERFSYRHIINNI 252
+I Q + ++ P +S+S+ P+ L + P++ + + R S + N+
Sbjct: 266 QFGLINAFQVKQLHKVIPLVSQSTVVPK----RLLKVYPLIEQTAKRLHRISLSKVYNHY 321
Query: 253 CPKSDT--------FYSSPKSVIKLLIVCVRKTFPLDLLGSNSNYSVLSKAIAILVKKPL 304
CP DT + P V L + + FP + G+ + ++ K + +K
Sbjct: 322 CPYIDTHDDEKILSYSLKPNQVFAFLRSILVRVFPKLIWGNQRIFEIILKDLETFLKLSR 381
Query: 305 HSKILFDELCKGLRVKDVKWLETRRLPAGEQTQKIPYYDVKNRQALLYKLFFWILSCYVP 364
+ L +++ +++WL + K+ D + R+ + + +W+ + ++
Sbjct: 382 YESFSLHYLMSNIKISEIEWLVLGK----RSNAKMCLSDFEKRKQIFAEFIYWLYNSFII 437
Query: 365 KLLSTFFYVTELSSTVD-IVYIRHDTWKTMSQPFLKSYFRRYLLENKYCFQHRSFTESKF 423
+L +FFY+TE S + VY R D WK + +PF+ S + ++
Sbjct: 438 PILQSFFYITESSDLRNRTVYFRKDIWKLLCRPFITSMKMEAFEKINENNVRMDTQKTTL 497
Query: 424 NHRNLRLIPKKSGLDFRIIAVPCKGVNIQEFNEFNDYVT--NALKPTKIILERLRMRRNT 481
+RL+PKK+ FR+I K I+ + V+ L+P IL+ L N
Sbjct: 498 PPAVIRLLPKKN--TFRLITNLRKRFLIKMGSNKKMLVSTNQTLRPVASILKHL---INE 552
Query: 482 KFTKAFSPLEIPKIVLSYKQRLLLKHGKIPNLYLLKFDIQSCYDSIPVQKVMKLVEARIC 541
+ + LE+ +L++K+ LL Y ++ DI+SCYD I + ++V+ ++
Sbjct: 553 ESSGIPFNLEVYMKLLTFKKDLLKHRMFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKL- 611
Query: 542 EEQQFFIRSQDILTTASTRLKRLHAVNGDIQFQ---------------ENDLVIDSVKTT 586
++ +F IR + S R + F + L +D V
Sbjct: 612 KDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQLLSMKTSDTLFVDFVDYW 671
Query: 587 VLSKEDVLTVVKMELFKTSIFYRGKCYLRKDGLFQGTPLSSVLVDILYDDLLEFYTEFTD 646
S ++ ++K L + YL+K G+ QG+ LSS L +DL++ Y FT
Sbjct: 672 TKSSSEIFKMLKEHLSGHIVKIGNSQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTK 731
Query: 647 ENDSDPMIIRLVDDFLIVSTSKKYIERLNNLAQTGFKSFNTYINPQKVLVXXXXXXXXXN 706
+ S +++R+VDDFL ++ +KK ++ NL+ GF+ N + +K ++ N
Sbjct: 732 KKGS--VLLRVVDDFLFITVNKKDAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIIN 789
Query: 707 ----------VPFCALQLNLRTLE 720
+PF +N+R+L+
Sbjct: 790 NTFFNESKKRMPFFGFSVNMRSLD 813
>Hs4507439 [LB] KOG1005 Telomerase catalytic subunit/reverse transcriptase TERT
Length = 1132
Score = 125 bits (313), Expect = 4e-28
Identities = 133/566 (23%), Positives = 232/566 (40%), Gaps = 62/566 (10%)
Query: 260 YSSPKSVIKLLIVCVRKTFPLDLLGSNSNYSVLSKAIAILVKKPLHSKILFDELCKGLRV 319
+SSP V + C+R+ P L GS N + + H+K+ EL + V
Sbjct: 455 HSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSV 514
Query: 320 KDVKWLETRRLPAGEQTQKIPYYDVKNRQALLYKLFFWILSCYVPKLLSTFFYVTELSST 379
+D WL RR P +P + + R+ +L K W++S YV +LL +FFYVTE +
Sbjct: 515 RDCAWL--RRSPG---VGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQ 569
Query: 380 VD-IVYIRHDTWKTMSQPFLKSYFRRYL---LENKYCFQHRSFTESKFNHRNLRLIPKKS 435
+ + + R W + ++ + +R L QHR + R LR IPK
Sbjct: 570 KNRLFFYRKSVWSKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSR-LRFIPKPD 628
Query: 436 GLDFRIIAVPCKGVNIQEFNEFNDYVTNALKPTKIILERLRMRRNTKFTKAFSPLEIPKI 495
GL + G + + +T+ +K +L R RR S L + I
Sbjct: 629 GLRPIVNMDYVVGARTFRREKRAERLTSRVKALFSVLNYERARRPGLL--GASVLGLDDI 686
Query: 496 VLSYKQRLLLKHGK--IPNLYLLKFDIQSCYDSIPVQKVMKLVEARICEEQQFFIRSQDI 553
+++ +L + P LY +K D+ YD+IP ++ +++ + I + + +R +
Sbjct: 687 HRAWRTFVLRVRAQDPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAV 746
Query: 554 LTTAS-----TRLKRLHAVNGDIQ---------FQENDLVIDSVKTTVLSKEDVLTVVKM 599
+ A+ K + D+Q QE + D+V V+ + L
Sbjct: 747 VQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHLQETSPLRDAV---VIEQSSSLNEASS 803
Query: 600 ELFKT--------SIFYRGKCYLRKDGLFQGTPLSSVLVDILYDDLLEFYTEFTDENDSD 651
LF ++ RGK Y++ G+ QG+ LS++L + Y D+ + D
Sbjct: 804 GLFDVFLRFMCHHAVRIRGKSYVQCQGIPQGSILSTLLCSLCYGDM---ENKLFAGIRRD 860
Query: 652 PMIIRLVDDFLIVSTSKKYIERLNNLAQTGFKSFNTYINPQKVLVXXXXXXXXXN----- 706
+++RLVDDFL+V+ + + G + +N +K +V
Sbjct: 861 GLLLRLVDDFLLVTPHLTHAKTFLRTLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFV 920
Query: 707 -------VPFCALQLNLRTLEVWKDRSSYN--------VLGTVLGSSKQLYNKLLWIFEM 751
P+C L L+ RTLEV D SSY + + + KL + +
Sbjct: 921 QMPAHGLFPWCGLLLDTRTLEVQSDYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRL 980
Query: 752 RLSYNMLDERLNSWETAARFLREVAL 777
+ LD ++NS +T + ++ L
Sbjct: 981 KCHSLFLDLQVNSLQTVCTNIYKILL 1006
>At5g16850 [LB] KOG1005 Telomerase catalytic subunit/reverse transcriptase TERT
Length = 1123
Score = 83.2 bits (204), Expect = 2e-15
Identities = 119/592 (20%), Positives = 229/592 (38%), Gaps = 87/592 (14%)
Query: 253 CPKSDT--FYSSPKSVIKLLIVCVRKTFPLDLLGSNSNYSVLSKAIAILVKKPLHSKILF 310
CP + Y + V+ + R P LLG+ VL K IA V + + K
Sbjct: 438 CPSVEERKLYCTNDQVVSFIWAICRYIVPESLLGTTHQMRVLRKNIAWFVSRRRNEKCTV 497
Query: 311 DELCKGLRVKDVKWLETRRLPAGEQTQKIPYYDVKNRQALLY-KLFFWILSCYVPKLLST 369
++ ++ D + + L ++ +++ Q +L K W+ V KL+
Sbjct: 498 NQFLHKVKPSDFPFFARKELCCMVNGHELQSESIRSTQQMLCTKWISWLFLEIVKKLVHF 557
Query: 370 FFYVTELSS-TVDIVYIRHDTWKTMSQPFLKSYFRRYLLENKYCFQHRSFTESKFNHRNL 428
FY TE ++I Y R +W+ + + Y+L + + SKF
Sbjct: 558 NFYATESQGGRLNIYYYRKRSWERLISKEISKALDGYVLVDDAEAESSRKKLSKF----- 612
Query: 429 RLIPKKSGLDFRIIAVPCKGVNIQEFNEFNDYVTNALKPTKIILERLRMRR-NTKFTKAF 487
R +PK +G+ + +F+ + + +L+ T +L+ ++++ + + F
Sbjct: 613 RFLPKANGVRM-----------VLDFSSSSR--SQSLRDTHAVLKDIQLKEPDVLGSSVF 659
Query: 488 SPLEIPKIVLSYKQRLLLKHGKIPNLYLLKFDIQSCYDSIPVQKVMKLVEARICEEQQFF 547
+ + + Y L + G++P LY + D+ +DS+ K++ ++++ + +E +
Sbjct: 660 DHDDFYRNLCPYLIHLRSQSGELPPLYFVVADVFKAFDSVDQGKLLHVIQSFLKDE---Y 716
Query: 548 IRSQDILTTASTRLKRLHAVNGDIQFQEN--------------DLVIDSVKTTVLSKEDV 593
I ++ L R ++ + N +V+D + + K+D+
Sbjct: 717 ILNRCRLVCCGKRSNWVNKILVSSDKNSNFSRFTSTVPYNALQSIVVDKGENHRVRKKDL 776
Query: 594 LTVVKMELFKTSIFYRGKCYLRKDGLFQGTPLSSVLVDILYDDLLE-FYTEFTDENDSDP 652
+ + L + Y++ G+ QG LSS+L Y L F +E D
Sbjct: 777 MVWIGNMLKNNMLQLDKSFYVQIAGIPQGHRLSSLLCCFYYGHLERTLIYPFLEEASKDV 836
Query: 653 M-----------------IIRLVDDFLIVSTSKKYIERLNNLAQTGFKSFNTYINPQKVL 695
++R +DD+L VSTS+ + + GFK +N ++N K
Sbjct: 837 SSKECSREEELIIPTSYKLLRFIDDYLFVSTSRDQASSFYHRLKHGFKDYNCFMNETKFC 896
Query: 696 V-----------XXXXXXXXXNVPF---CALQLNLRTLEVWKDRSSY-----NVLGTVLG 736
+ VPF L +N RT EV D + Y + +V
Sbjct: 897 INFEDKEEHRCSSNRMFVGDNGVPFVRWTGLLINSRTFEVQVDYTRYLSGHISSTFSVAW 956
Query: 737 SSKQLYN---KLLWIFEMRLSYNMLDERLNSWETAARFLREVALNVIQSFIV 785
+K + N KL + + + D +NS E V LN+ Q F++
Sbjct: 957 QNKPVRNLRQKLCYFLVPKCHPILFDSNINSGEI-------VRLNIYQIFLL 1001
>ECU09g0310 [LB] KOG1005 Telomerase catalytic subunit/reverse transcriptase
TERT
Length = 823
Score = 81.3 bits (199), Expect = 6e-15
Identities = 129/655 (19%), Positives = 254/655 (38%), Gaps = 94/655 (14%)
Query: 54 ISSTFSSSYHCETIETCILYLLHKNFTNNILTYGYQLGKNS--DVMTKLFCRSSNISVSV 111
+SS S+ E I + LL KN N++ GY+ TK+ C N S +
Sbjct: 50 VSSFKSTQKDVELISKAVRTLLIKNRDNHLCA-GYKWWSPGLPGASTKIICYFPNSSSRI 108
Query: 112 LKCNSWRLFHQLVGTDNFVNLLINYSVY--FNTGHYFRQIIGTPANAPQVPPAWLDRSYR 169
L+ + W + +G + +L V N+G+ F + + S
Sbjct: 109 LRSHEWSWLMRSIGDELAFFILTECLVIQMLNSGYVF------------LAGDFKSLSGM 156
Query: 170 RERNTKLTIDWNSALYHKIRPQDYKNIIETDQGLLIAEIFPKISESSKTPRSLNFALNNL 229
I N Y + R + ++ F + E+ + + +
Sbjct: 157 ATERVSNAIGRNVLFYKETRRISFCSL----------SAFEYVFEAHNSEK-YKVIQKDA 205
Query: 230 KPILYELIRAHERFSYRHIINN-------ICPKSDTFYSSPKS--VIKLLIVCVRKTFP- 279
+ +L + R ++ S I + I KS K ++ L + +K F
Sbjct: 206 RDVLESIERRWKKISTHAIFKSFFKDELAIEDKSSALECGVKQSKLVNFLFLISKKLFKD 265
Query: 280 -LDLLGSNSNYSVLSKAIAILVKKPLHSKILFDELCKGLRVKDVKWLETRRLPAGEQTQK 338
DL G + +L +++L+ + + + +EL K R+ K+ T R E +
Sbjct: 266 AFDLHG----FRILKSRLSLLIHRNRYETVSKNELVKYFRISRFKFFRTLRCTRSEFVFR 321
Query: 339 IPYYDVKNRQALLYKLFFWILSCYVPKLLSTFFYVTELS-STVDIVYIRHDTWKTMSQPF 397
+ V +R +I + ++S +FY TE S S + Y W+ S
Sbjct: 322 ---FRVSSR------FLVYITEKLIIPIISKYFYCTETSFSKFKVHYFPRSIWRHFSSIH 372
Query: 398 LKSYFRRYLLENKYCFQHRSFTESKFNHRNLRLIPKKSGLDFRIIAVPCKGVNIQEFNEF 457
+ + ++ + + ++ LR IPK +G RII+ N+ +
Sbjct: 373 IDRFLEKF---------EPAKGSTTHSYSELRCIPKMNGA--RIIS------NMSKARNG 415
Query: 458 NDYVTNALKPTKIILERLRMRRNTKFTKAFSPLEIPKIVLSYKQRLLLKHGKIPNLYLLK 517
+ ++ P +L R T S L + Y++ + LY+LK
Sbjct: 416 RPSINKSIYPEFCVL-----RHETHGMLGNSILNHSGM---YEKLSSYLSRSVRPLYILK 467
Query: 518 FDIQSCYDSIPVQKVMKLVEARICEEQQFFIRSQDILTTASTRLKRLHAVN--------G 569
D+ C+D+IP +V+ LV R+ + ++ +S IL L+ +
Sbjct: 468 VDLSGCFDNIPQDEVVSLVR-RLLHKSRYHTKSFSILEEVGGELRSRYVCKVTENAETIN 526
Query: 570 DIQFQE----NDLVIDSVKTTVLSKEDVLTVVKMELFKTSIFYRGKCYLRKDGLFQGTPL 625
++ + N +V ++ +LS+E+V + + + + + GK +++K G+ QG+
Sbjct: 527 ELMMEPGAFVNKVVKENASQRILSREEVEGAMTNMIKRNYVKHNGKLFVQKTGIAQGSVA 586
Query: 626 SSVLVDILYDDLLEFYTEFTDENDSDPMIIRLVDDFLIVSTSKKYIERLNNLAQT 680
S++L + Y + + Y D + ++ R VDDFL++S I + ++Q+
Sbjct: 587 STLLCSLYYKSIDDLY---FDRVFKEGILTRYVDDFLVISPCIDEIMKFLEVSQS 638
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,822,402
Number of Sequences: 60738
Number of extensions: 2158211
Number of successful extensions: 5020
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4994
Number of HSP's gapped (non-prelim): 8
length of query: 861
length of database: 30,389,216
effective HSP length: 115
effective length of query: 746
effective length of database: 23,404,346
effective search space: 17459642116
effective search space used: 17459642116
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)