ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4612 good BK KOG1649 Chromatin structure and dynamics SWI-SNF chromatin remodeling complex, Snf5 subunit
r_klactIII4612 good BK KOG1649 Transcription SWI-SNF chromatin remodeling complex, Snf5 subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4612 1630805 1629480 -442
(442 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR321c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 257 2e-68
SPCC16A11.14_1 [BK] KOG1649 SWI-SNF chromatin remodeling complex... 138 2e-32
Hs4507077 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5... 100 3e-21
Hs14777735 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf... 100 3e-21
CE01045 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 95 2e-19
7296745 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 91 3e-18
SPAC2F7.08c [BK] KOG1649 SWI-SNF chromatin remodeling complex Sn... 77 7e-14
YBR289w [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 s... 73 7e-13
At3g17590 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5... 68 2e-11
>YLR321c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 426
Score = 257 bits (657), Expect = 2e-68
Identities = 138/316 (43%), Positives = 199/316 (62%), Gaps = 16/316 (5%)
Query: 128 TGPDGTNDGTAGTSNPSSELDRIKLNDLPDLESQDDSATPLALLKYPRIRETFVQSRIAI 187
+G + N+ + G SN + D I LPDL QD P +L+YP+IR+TF+ ++
Sbjct: 126 SGLNSNNNASNGPSNKAQAQD-IGNAVLPDL--QDQHHNPFNILRYPKIRDTFINGKVVS 182
Query: 188 SYKDLLGDSIQDPQQVDIESPIMVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILC 247
Y+ L + + IM+PI L++E GH + D F+WN ND S++PE+FA+I C
Sbjct: 183 PYR--LNTDQETKANANSGEAIMIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYC 240
Query: 248 QDLDFPVLSNPNNSPYTQIISMINEQLQEYETLASLQV-PDLHVIINLTANLDSKLYDDT 306
+DLD + + TQI ++I EQL++ E +A+ ++ DLHVIINLT NL + ++D
Sbjct: 241 KDLDMT-----SATLQTQIANIIKEQLKDLENIAATEIMSDLHVIINLTCNLQDRFFEDN 295
Query: 307 FEWNLNDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHESLLKVKKDWLEGNLNLAHVEN 366
F+WNLND SL PE+FA +VQDLGL REF+P I+ SLHE++LK+KKDW++G+L HV N
Sbjct: 296 FQWNLNDKSLTPERFATSIVQDLGLTREFIPLISQSLHETILKIKKDWVDGHLIQDHVPN 355
Query: 367 KAAFGYTSGIRLDIDTLGASWFPKVEVLSQWXXXXXXXXXXXNMRRLKRESAKVXXXXXX 426
AAFGY SGIRLDID LG++W P+VE+L++ N+RRLKRE+ ++
Sbjct: 356 DAAFGYLSGIRLDIDELGSNWCPRVEILTKEEIQKREIEKERNLRRLKRETDRL-----S 410
Query: 427 XXXXXXXXXLETTLRI 442
LETT+R+
Sbjct: 411 RRGRRRLDDLETTMRM 426
Score = 70.1 bits (170), Expect = 6e-12
Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
Query: 3 LVPQAYLSNFHNRVKNED--VPLFTAAQLSR-NKRGKQVNYAEFDTDLLDEF 51
L+PQAY+SNFHNR+ NED +P+FT AQ +R +KR K VNYAE+D DL DEF
Sbjct: 7 LIPQAYISNFHNRLTNEDDGIPIFTMAQQTRQHKRAKVVNYAEYDNDLFDEF 58
>SPCC16A11.14_1 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 340
Score = 138 bits (347), Expect = 2e-32
Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 206 ESPIMVPIRLNVEF-SGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYT 264
E + +PIRL++E + ++L D F+WN+N+ MTP+ FA ILC DLD N T
Sbjct: 113 ERDVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLST-----NVYGT 167
Query: 265 QIISMINEQLQEYETLASLQVP---DLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQF 321
QI S I Q++EY +A + +P ++ V+ N+ L Y+D EWNL L PE+F
Sbjct: 168 QISSSIRAQIEEYAPVAEVPMPKGQEMLVVFNIQVQLAQLSYNDQVEWNLTSP-LTPEEF 226
Query: 322 AELVVQDLGLQREFVPAIAHSLHESLLKVKKDWLEGNLNLAHVENKAAFGYTSGIRLDID 381
+ L DLGL E P IA+++HE LLK+KK+ EG +L ++ A G +G R D+D
Sbjct: 227 SVLTCNDLGLSGESRPEIAYAIHECLLKLKKNACEG--DLPDYDSDAVPGTKAGPRQDMD 284
Query: 382 TLGASWFPKVEVLSQWXXXXXXXXXXXNMRRLKRESAK 419
TLGA W P +E +S +++ +RE++K
Sbjct: 285 TLGALWQPVLETVSLEDAKKNENNRENLVKQWRREASK 322
>Hs4507077 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 385
Score = 100 bits (250), Expect = 3e-21
Identities = 72/208 (34%), Positives = 103/208 (48%), Gaps = 16/208 (7%)
Query: 209 IMVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIIS 268
++VPIRL++E G KL D F WN+N+ MTPE F+ ILC DLD L+ I S
Sbjct: 185 VLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTF-----VPAIAS 239
Query: 269 MINEQLQEYETLASLQ-VPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQ 327
I +Q++ Y T + L+ D VII L ++ + D FEW++++ PE+FA +
Sbjct: 240 AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS 299
Query: 328 DLGLQREFVPAIAHSLHESLLKVKKDWLEGNLNLAHVENKAAFGYTSGIRLDIDTLGASW 387
+LGL EFV IA+S+ L +K + L VE A T D D W
Sbjct: 300 ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVE--IAIRNTG----DAD----QW 349
Query: 388 FPKVEVLSQWXXXXXXXXXXXNMRRLKR 415
P +E L+ N RR++R
Sbjct: 350 CPLLETLTDAEMEKKIRDQDRNTRRMRR 377
>Hs14777735 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 394
Score = 100 bits (250), Expect = 3e-21
Identities = 72/208 (34%), Positives = 103/208 (48%), Gaps = 16/208 (7%)
Query: 209 IMVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIIS 268
++VPIRL++E G KL D F WN+N+ MTPE F+ ILC DLD L+ I S
Sbjct: 194 VLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTF-----VPAIAS 248
Query: 269 MINEQLQEYETLASLQ-VPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQ 327
I +Q++ Y T + L+ D VII L ++ + D FEW++++ PE+FA +
Sbjct: 249 AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS 308
Query: 328 DLGLQREFVPAIAHSLHESLLKVKKDWLEGNLNLAHVENKAAFGYTSGIRLDIDTLGASW 387
+LGL EFV IA+S+ L +K + L VE A T D D W
Sbjct: 309 ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVE--IAIRNTG----DAD----QW 358
Query: 388 FPKVEVLSQWXXXXXXXXXXXNMRRLKR 415
P +E L+ N RR++R
Sbjct: 359 CPLLETLTDAEMEKKIRDQDRNTRRMRR 386
>CE01045 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 381
Score = 95.1 bits (235), Expect = 2e-19
Identities = 66/213 (30%), Positives = 106/213 (48%), Gaps = 19/213 (8%)
Query: 206 ESPIMVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPV-LSNPNNSPYT 264
E +VPIRL++E G KL D F +N N+ +TPE A I+C+DLD P+ + P
Sbjct: 177 EGEDLVPIRLDMELDGIKLRDTFTFNKNEKMITPEMIAEIMCEDLDLPLAVFQP------ 230
Query: 265 QIISMINEQLQEYETLASLQVP--DLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFA 322
I + IN+QL+ L V D ++ L N+ ++ D FEW+++D + PE+F+
Sbjct: 231 AITAAINQQLEASTEAPPLDVNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEFS 290
Query: 323 ELVVQDLGLQREFVPAIAHSLHESLLKVKKDWLEGNLNLAHVENKAAFGYTSGIRLDIDT 382
+ ++LGL EF+ IA+S+ L ++ + LA V+ F +S +
Sbjct: 291 RNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSESPLATVD--CPFRTSSEVE----- 343
Query: 383 LGASWFPKVEVLSQWXXXXXXXXXXXNMRRLKR 415
SW P +E L+ N RR++R
Sbjct: 344 ---SWGPFLETLTDAEIEKKMRDQDRNTRRMRR 373
>7296745 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 370
Score = 90.9 bits (224), Expect = 3e-18
Identities = 52/141 (36%), Positives = 80/141 (55%), Gaps = 9/141 (6%)
Query: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIISM 269
+VPIRL++E G KL D F WN N+ +TPEQFA +LC DLD N P+ I+
Sbjct: 170 LVPIRLDMELEGQKLRDTFTWNKNESMITPEQFAEVLCDDLDL------NPLPFVPAIAQ 223
Query: 270 -INEQLQEYETLASL--QVPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVV 326
I +Q++ + + + D VI+ L ++ + D EW++++ + PE+FA +
Sbjct: 224 AIRQQIEAFPNDPPILEETCDQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLC 283
Query: 327 QDLGLQREFVPAIAHSLHESL 347
+LGL EFV AIA+S+ L
Sbjct: 284 AELGLGGEFVTAIAYSIRGQL 304
>SPAC2F7.08c [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 632
Score = 76.6 bits (187), Expect = 7e-14
Identities = 55/169 (32%), Positives = 78/169 (45%), Gaps = 33/169 (19%)
Query: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFP-----VLSNPNNSPYT 264
+VPIRL ++ +KL D F WNL D ++ +QFA +C D D P ++ N + S
Sbjct: 141 LVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVHIVQNISKSIQA 200
Query: 265 QI------------------ISMINEQLQEYETLASL------QVP----DLHVIINLTA 296
QI S +E + +E SL Q+P DL ++I L
Sbjct: 201 QINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDLRILIKLDI 260
Query: 297 NLDSKLYDDTFEWNLNDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHE 345
+ D FEWNL E+FA ++ DLGL EF A+AHS+ E
Sbjct: 261 TIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCTAVAHSIRE 309
>YBR289w [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 905
Score = 73.2 bits (178), Expect = 7e-13
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 201 QQVDIESPIMVPIRLNVEFSGHK--LADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNP 258
Q ++ S +VPIRL + + L D +WN ND + E F + +D F +
Sbjct: 448 QAMNETSEQLVPIRLEFDQDRDRFFLRDTLLWNKNDKLIKIEDFVDDMLRDYRFEDATRE 507
Query: 259 NNSPYTQIISMINEQLQEYETLASLQV-------PDLHVIINLTANLDSKLYDDTFEWNL 311
+ I I EQ+QE++ +++ DL + I L + D FEW +
Sbjct: 508 QH--IDTICQSIQEQIQEFQGNPYIELNQDRLGGDDLRIRIKLDIVVGQNQLIDQFEWEI 565
Query: 312 NDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHESL 347
++ CPE+FAE + Q+L L EFV AIAHS+ E +
Sbjct: 566 SNSDNCPEEFAESMCQELELPGEFVTAIAHSIREQV 601
>At3g17590 [BK] KOG1649 SWI-SNF chromatin remodeling complex Snf5 subunit
Length = 240
Score = 68.2 bits (165), Expect = 2e-11
Identities = 44/144 (30%), Positives = 71/144 (48%), Gaps = 9/144 (6%)
Query: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIISM 269
+VPIRL+++F G + D F WN +D FA +DL P + TQI
Sbjct: 23 LVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPY------AFVTQIAQS 76
Query: 270 INEQLQEYETL--ASLQVPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQ 327
I QL ++ + + + I L ++ L D F W+LN+ PE+FA + +
Sbjct: 77 IQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCK 136
Query: 328 DLGLQ-REFVPAIAHSLHESLLKV 350
DLG++ E PA+A ++ E L ++
Sbjct: 137 DLGVEDPEVGPAVAFAIREQLYEI 160
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,872,985
Number of Sequences: 60738
Number of extensions: 883197
Number of successful extensions: 2282
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 19
length of query: 442
length of database: 30,389,216
effective HSP length: 109
effective length of query: 333
effective length of database: 23,768,774
effective search space: 7915001742
effective search space used: 7915001742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)