ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4615.1 suspect: Pn K KOG1668 Transcription Elongation factor 1 beta/delta chain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4615.1 1631384 1631617 78
(78 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAL003w [K] KOG1668 Elongation factor 1 beta/delta chain 42 1e-04
Hs4503477 [K] KOG1668 Elongation factor 1 beta/delta chain 38 0.002
Hs22057527 [K] KOG1668 Elongation factor 1 beta/delta chain 38 0.003
SPCC1450.04 [K] KOG1668 Elongation factor 1 beta/delta chain 35 0.014
7302868 [K] KOG1668 Elongation factor 1 beta/delta chain 35 0.018
Hs17456323 [K] KOG1668 Elongation factor 1 beta/delta chain 33 0.070
Hs20469472 [K] KOG1668 Elongation factor 1 beta/delta chain 29 1.0
SPBC1921.03c [A] KOG3763 mRNA export factor TAP/MEX67 29 1.3
At1g52510 [R] KOG1454 Predicted hydrolase/acyltransferase (alpha... 27 5.0
CE23650 [Q] KOG0054 Multidrug resistance-associated protein/mito... 26 8.6
CE23649 [Q] KOG0054 Multidrug resistance-associated protein/mito... 26 8.6
>YAL003w [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 206
Score = 42.4 bits (98), Expect = 1e-04
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEG 75
M+ +DFSK+ETL++LN LADKSYIEG
Sbjct: 1 MASTDFSKIETLKQLNASLADKSYIEG 27
>Hs4503477 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 225
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEGYV 77
M F D LQ LN +LADKSYIEGYV
Sbjct: 1 MGFGDLKSPAGLQVLNDYLADKSYIEGYV 29
>Hs22057527 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 225
Score = 37.7 bits (86), Expect = 0.003
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEGYV 77
M F D LQ LN +LADKSYIEGYV
Sbjct: 1 MGFRDLKSPAGLQVLNDYLADKSYIEGYV 29
>SPCC1450.04 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 214
Score = 35.4 bits (80), Expect = 0.014
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEGY 76
M FSD + L++LN FL DKS+IEGY
Sbjct: 1 MGFSDLTSDAGLKQLNDFLLDKSFIEGY 28
>7302868 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 222
Score = 35.0 bits (79), Expect = 0.018
Identities = 15/28 (53%), Positives = 20/28 (70%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEGY 76
M+F D + + L++LN FLAD SYI GY
Sbjct: 1 MAFGDVTTPQGLKELNAFLADNSYISGY 28
>Hs17456323 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 122
Score = 33.1 bits (74), Expect = 0.070
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIEG 75
M F D +LQ LN +L DKSYIEG
Sbjct: 1 MGFRDLKSPASLQVLNDYLVDKSYIEG 27
>Hs20469472 [K] KOG1668 Elongation factor 1 beta/delta chain
Length = 132
Score = 29.3 bits (64), Expect = 1.0
Identities = 14/26 (53%), Positives = 15/26 (56%)
Query: 49 MSFSDFSKVETLQKLNTFLADKSYIE 74
M F D L LN +LADKSYIE
Sbjct: 1 MGFRDLKSPAGLHVLNDYLADKSYIE 26
>SPBC1921.03c [A] KOG3763 mRNA export factor TAP/MEX67
Length = 596
Score = 28.9 bits (63), Expect = 1.3
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 32 IDSFLVSSLTRFNYPLTMSFSDFSKVETLQKLNTFLA 68
I+S +++S + +P+ SF F KVET Q +N+FLA
Sbjct: 310 INSEIIASQSTVPFPVYQSF--FDKVETEQIVNSFLA 344
>At1g52510 [R] KOG1454 Predicted hydrolase/acyltransferase (alpha/beta
hydrolase superfamily)
Length = 330
Score = 26.9 bits (58), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 35 FLVSSLTRFNYPLTMSFSDFSKVETLQKLNTFLADKSYIEGYVK 78
FLV + +Y LT + + SKVE L LN+ L S + G K
Sbjct: 200 FLVVQVRMCSYGLTWALKNPSKVEKLAILNSPLTVSSPVPGLFK 243
>CE23650 [Q] KOG0054 Multidrug resistance-associated protein/mitoxantrone
resistance protein ABC superfamily
Length = 1427
Score = 26.2 bits (56), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 25 LVRRRRGI-----DSFLVSSLTRFNYPLTMSFSDFSKVETLQK 62
LV+ RRGI D L S RFN ++ +SD E L+K
Sbjct: 1187 LVKLRRGISAIAQDPSLFSGTVRFNLDPSLEYSDSMIWEALEK 1229
>CE23649 [Q] KOG0054 Multidrug resistance-associated protein/mitoxantrone
resistance protein ABC superfamily
Length = 1400
Score = 26.2 bits (56), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 25 LVRRRRGI-----DSFLVSSLTRFNYPLTMSFSDFSKVETLQK 62
LV+ RRGI D L S RFN ++ +SD E L+K
Sbjct: 1160 LVKLRRGISAIAQDPSLFSGTVRFNLDPSLEYSDSMIWEALEK 1202
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.138 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,636,463
Number of Sequences: 60738
Number of extensions: 66660
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 11
length of query: 78
length of database: 30,389,216
effective HSP length: 54
effective length of query: 24
effective length of database: 27,109,364
effective search space: 650624736
effective search space used: 650624736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)