ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4714 good A KOG0304 RNA processing and modification mRNA deadenylase subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4714 1670990 1669650 -447
(447 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR052c [A] KOG0304 mRNA deadenylase subunit 346 5e-95
SPCC18.06c [A] KOG0304 mRNA deadenylase subunit 184 3e-46
7294634 [A] KOG0304 mRNA deadenylase subunit 184 3e-46
At1g80780 [A] KOG0304 mRNA deadenylase subunit 173 4e-43
HsM4758946 [A] KOG0304 mRNA deadenylase subunit 168 1e-41
Hs21361073 [A] KOG0304 mRNA deadenylase subunit 168 1e-41
Hs7019339 [A] KOG0304 mRNA deadenylase subunit 164 2e-40
Hs17978500 [A] KOG0304 mRNA deadenylase subunit 164 2e-40
ECU08g0850 [A] KOG0304 mRNA deadenylase subunit 164 2e-40
At5g10960 [A] KOG0304 mRNA deadenylase subunit 164 2e-40
At2g32070 [A] KOG0304 mRNA deadenylase subunit 157 2e-38
At1g15920 [A] KOG0304 mRNA deadenylase subunit 149 1e-35
At5g22250 [A] KOG0304 mRNA deadenylase subunit 146 7e-35
At3g44260 [A] KOG0304 mRNA deadenylase subunit 143 5e-34
CE22588 [A] KOG0304 mRNA deadenylase subunit 140 3e-33
Hs17433778_2 [A] KOG0304 mRNA deadenylase subunit 94 5e-19
At1g27820 [A] KOG0304 mRNA deadenylase subunit 83 7e-16
At1g06450 [A] KOG0304 mRNA deadenylase subunit 81 3e-15
At3g44240 [A] KOG0304 mRNA deadenylase subunit 79 1e-14
At1g61470 [A] KOG0304 mRNA deadenylase subunit 77 5e-14
At1g27890 [A] KOG0304 mRNA deadenylase subunit 77 7e-14
>YNR052c [A] KOG0304 mRNA deadenylase subunit
Length = 433
Score = 346 bits (887), Expect = 5e-95
Identities = 197/459 (42%), Positives = 256/459 (54%), Gaps = 45/459 (9%)
Query: 1 MQSLNSQLGGLP-NSEQFFG-KGAVQQQGPVGMNGMLFSPSMNSTRMMPQQSQQPHVLHG 58
MQS+N Q L EQFF + A +Q M ++SP +N RM PQ + ++G
Sbjct: 1 MQSMNVQPRVLAVGGEQFFSQRQASEQHQQQNMGPQVYSPKVNRARMFPQ-GMPVNTING 59
Query: 59 LENNGGLQNSYLLKQKMDVV-----------NSAFGXXXXXXXXXXPGKMPLPNNGQVPM 107
N + N+YLLKQK + + F P + + Q
Sbjct: 60 SVNQE-MNNAYLLKQKNEPLLTQQQQQQQQQQQPFNIGTPVSVASLPPGLNVLQQQQQQQ 118
Query: 108 MMQXXXXXXXXXXXTIXXXXXXXXXXXXXXXGNVNGLDTTPLPNASHTPI--SSPAHLLI 165
Q + L N S PI P +L +
Sbjct: 119 QQQQQQQQGVGLNRPLASQLPKH------------------LTNQSMPPIFLPPPNYLFV 160
Query: 166 REVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLL 225
R+VW++N+ EFA+IR+++ QY +SISTEFVGT+ARPIG FRSK DYHYQTMR+NVD L
Sbjct: 161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFL 220
Query: 226 TPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNGV 285
PIQ+GLSLSD GNKPDN PSTWQFNF FD KE +++ESLELL+KSG+ E+H+ G+
Sbjct: 221 NPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTESLELLRKSGINFEKHENLGI 280
Query: 286 DFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIPT 345
D EF+QL+MDSGL+++D VTWI+YHAAYD GFLIN LMN +MPNNKEDFEWWV +Y+P
Sbjct: 281 DVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN 340
Query: 346 SYDLNLINKLVHEVTXXXXXXXXXXXXXXXXXXXXXXXXXYTLELLADELGIPIFPLFXX 405
YDLNL+ K++ E Y+L LADELG+P F +F
Sbjct: 341 FYDLNLVYKIIQE----------FKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTT 390
Query: 406 XXXXXXXXXXXYTQLGKLSLYKLRNGTDFSYYKNLIYGI 444
+ QL KLS++K NGTDF+ Y+ +IYGI
Sbjct: 391 TGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>SPCC18.06c [A] KOG0304 mRNA deadenylase subunit
Length = 332
Score = 184 bits (466), Expect = 3e-46
Identities = 88/192 (45%), Positives = 130/192 (66%), Gaps = 1/192 (0%)
Query: 165 IREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDL 224
IR+VW N+ E +I +IE+Y V+S+ TEF G +ARP+G F+S DYHYQT+R+NVD
Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81
Query: 225 LTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNG 284
L IQIGL+LSD +GN P TWQFNF F++ + ES+ELL KSG+ ++HQ+ G
Sbjct: 82 LKIIQIGLALSDEEGNAPVE-ACTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVG 140
Query: 285 VDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIP 344
++ +FA+L++ SGL+L +EVTWI++H+ YD+ +L+ + +P E+F + Y P
Sbjct: 141 IEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP 200
Query: 345 TSYDLNLINKLV 356
+YD+ I K V
Sbjct: 201 KNYDIKYIMKSV 212
>7294634 [A] KOG0304 mRNA deadenylase subunit
Length = 406
Score = 184 bits (466), Expect = 3e-46
Identities = 81/206 (39%), Positives = 136/206 (65%), Gaps = 1/206 (0%)
Query: 149 LPNASHTPISSPAHLLIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFR 208
+ A H I S IR+VW+ N+ EF IRK++++Y +++ TEF G +ARP+G FR
Sbjct: 9 ISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFR 68
Query: 209 SKTDYHYQTMRSNVDLLTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLE 268
S DYHYQ +R NVDLL IQ+GL+ D G P + STWQFNF F+++++ +S++
Sbjct: 69 STADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGY-STWQFNFKFNLSEDMYAQDSID 127
Query: 269 LLKKSGVILERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNM 328
LL+ SG+ ++H+++G+D +FA+L+M SG++L + + W+ +H+ YD+G+L+ L + N+
Sbjct: 128 LLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNL 187
Query: 329 PNNKEDFEWWVQKYIPTSYDLNLINK 354
P ++ +F + Y P +D+ + K
Sbjct: 188 PPDESEFFDLLHIYFPNIFDIKYLMK 213
>At1g80780 [A] KOG0304 mRNA deadenylase subunit
Length = 274
Score = 173 bits (439), Expect = 4e-43
Identities = 79/200 (39%), Positives = 133/200 (66%), Gaps = 6/200 (3%)
Query: 165 IREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDL 224
IREVW +N+ E +IR +++ + +++ TEF G + RP+G F+S DYHY+T+++NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 225 LTPIQIGLSLSDLQGNKP----DNFPSTWQFNFH-FDVTKETVNSESLELLKKSGVILER 279
L IQ+GL+ S+ QGN P D + WQFNF FD+ + +S+ELLK+SG+ L +
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKY-CIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 130
Query: 280 HQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWV 339
+ +G+D FA+L+M SG++LN+ V W+++H+ YD+G+L+ L N+P+++ DF +
Sbjct: 131 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 190
Query: 340 QKYIPTSYDLNLINKLVHEV 359
Y PT YD+ + K + +
Sbjct: 191 NVYFPTVYDIKHLMKFCNSL 210
>HsM4758946 [A] KOG0304 mRNA deadenylase subunit
Length = 292
Score = 168 bits (426), Expect = 1e-41
Identities = 75/191 (39%), Positives = 126/191 (65%), Gaps = 1/191 (0%)
Query: 164 LIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVD 223
+I EVW +N+ E IR+++ Y I++ TEF G + RPIG FRS DY YQ +R NVD
Sbjct: 11 VICEVWASNLEEEMRKIREIVPSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD 70
Query: 224 LLTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQN 283
LL IQ+GL+ ++ +G P +TWQFNF F++T++ + +S++LL SG+ ++H++
Sbjct: 71 LLKIIQLGLTFTNEKGEYPSGI-NTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEE 129
Query: 284 GVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYI 343
G+D FA+L+M SG++L D V W+S+H+ YD+G+++ L ++ +P + +F + +
Sbjct: 130 GIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFLHILNLFS 189
Query: 344 PTSYDLNLINK 354
P+ YD+ + K
Sbjct: 190 PSIYDVKYLMK 200
>Hs21361073 [A] KOG0304 mRNA deadenylase subunit
Length = 292
Score = 168 bits (426), Expect = 1e-41
Identities = 75/191 (39%), Positives = 126/191 (65%), Gaps = 1/191 (0%)
Query: 164 LIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVD 223
+I EVW +N+ E IR+++ Y I++ TEF G + RPIG FRS DY YQ +R NVD
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD 70
Query: 224 LLTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQN 283
LL IQ+GL+ ++ +G P +TWQFNF F++T++ + +S++LL SG+ ++H++
Sbjct: 71 LLKIIQLGLTFTNEKGEYPSGI-NTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEE 129
Query: 284 GVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYI 343
G+D FA+L+M SG++L D V W+S+H+ YD+G+++ L ++ +P + +F + +
Sbjct: 130 GIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF 189
Query: 344 PTSYDLNLINK 354
P+ YD+ + K
Sbjct: 190 PSIYDVKYLMK 200
>Hs7019339 [A] KOG0304 mRNA deadenylase subunit
Length = 262
Score = 164 bits (416), Expect = 2e-40
Identities = 76/175 (43%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 180 IRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLTPIQIGLSLSDLQG 239
IR++I +Y +++ TEF G +ARPIG FRS DY YQ +R NVDLL IQ+GL+ + QG
Sbjct: 4 IRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 63
Query: 240 NKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNGVDFDEFAQLMMDSGL 299
P STWQFNF F++T++ +S+ELL SG+ ++H++ G++ FA+L+M SG+
Sbjct: 64 EYPPG-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGV 122
Query: 300 LLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIPTSYDLNLINK 354
+L + V W+S+H+ YD+G+LI L N+N+P + DF ++ + P YD+ + K
Sbjct: 123 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMK 177
>Hs17978500 [A] KOG0304 mRNA deadenylase subunit
Length = 221
Score = 164 bits (416), Expect = 2e-40
Identities = 76/175 (43%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 180 IRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLTPIQIGLSLSDLQG 239
IR++I +Y +++ TEF G +ARPIG FRS DY YQ +R NVDLL IQ+GL+ + QG
Sbjct: 4 IRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 63
Query: 240 NKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNGVDFDEFAQLMMDSGL 299
P STWQFNF F++T++ +S+ELL SG+ ++H++ G++ FA+L+M SG+
Sbjct: 64 EYPPG-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGV 122
Query: 300 LLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIPTSYDLNLINK 354
+L + V W+S+H+ YD+G+LI L N+N+P + DF ++ + P YD+ + K
Sbjct: 123 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMK 177
>ECU08g0850 [A] KOG0304 mRNA deadenylase subunit
Length = 262
Score = 164 bits (415), Expect = 2e-40
Identities = 75/188 (39%), Positives = 125/188 (65%), Gaps = 1/188 (0%)
Query: 165 IREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDL 224
I VW++N++ E I ++I +Y IS+ TEF G +A+PIG+F+S + + YQ ++ NVD+
Sbjct: 6 ILNVWKDNLHGEMRKISQLIGRYNYISMDTEFPGVVAKPIGSFKSSSSFAYQQLKCNVDI 65
Query: 225 LTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNG 284
L IQ+G+SLSD QGN+P STWQFNF F + + ES++LL ++ + + H++ G
Sbjct: 66 LKIIQLGISLSDEQGNRPCPI-STWQFNFAFSLETDMYAQESIDLLIQARIDFKEHERRG 124
Query: 285 VDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIP 344
+ +EF +++M SGL+++++V W+S+H+AYD+G+LI L +P +EDF + P
Sbjct: 125 IKVEEFGEVLMTSGLVMSEDVVWVSFHSAYDFGYLIKILTCNPLPEREEDFYRLLAALFP 184
Query: 345 TSYDLNLI 352
YD+ +
Sbjct: 185 DFYDIKFL 192
>At5g10960 [A] KOG0304 mRNA deadenylase subunit
Length = 277
Score = 164 bits (415), Expect = 2e-40
Identities = 76/192 (39%), Positives = 126/192 (65%), Gaps = 6/192 (3%)
Query: 163 LLIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNV 222
++IREVW N+ EFA+IR++++++ I++ TEF G + +P+ F+ D +Y+T++ NV
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69
Query: 223 DLLTPIQIGLSLSDLQGNKP----DNFPSTWQFNFH-FDVTKETVNSESLELLKKSGVIL 277
DLL IQ+GL+ SD GN P D F WQFNF F++ ++ SES+ELL++ G+
Sbjct: 70 DLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLRQCGIDF 128
Query: 278 ERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEW 337
+++ + G+D F +LMM SG++LND ++W+++H YD+G+L+ L +P + DF
Sbjct: 129 KKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFK 188
Query: 338 WVQKYIPTSYDL 349
+ Y PT YD+
Sbjct: 189 LLYVYFPTVYDI 200
>At2g32070 [A] KOG0304 mRNA deadenylase subunit
Length = 252
Score = 157 bits (398), Expect = 2e-38
Identities = 69/187 (36%), Positives = 123/187 (64%), Gaps = 5/187 (2%)
Query: 178 AIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLTPIQIGLSLSDL 237
A+IR++++ + +++ TEF G + RP+G F++ T+YHY+T+++NV++L IQ+GL+ SD
Sbjct: 2 ALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDE 61
Query: 238 QGNKP----DNFPSTWQFNFH-FDVTKETVNSESLELLKKSGVILERHQQNGVDFDEFAQ 292
+GN P DN WQFNF FD+ + ++S+ELL++SG+ ++ + G+D FA+
Sbjct: 62 KGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAE 121
Query: 293 LMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIPTSYDLNLI 352
L+M SG++LN+ V W+++H+ YD+G+L+ L N+P + F + Y P YD+ +
Sbjct: 122 LLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHL 181
Query: 353 NKLVHEV 359
K + +
Sbjct: 182 MKFCNSL 188
>At1g15920 [A] KOG0304 mRNA deadenylase subunit
Length = 286
Score = 149 bits (375), Expect = 1e-35
Identities = 72/198 (36%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 165 IREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPI------GNFRSKTDYHYQTM 218
IREVW +N+ E A+I + I+ + +++ TEF G + + + + +Y+Y T+
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 219 RSNVDLLTPIQIGLSLSDLQGNKPD---NFPSTWQFNFH-FDVTKETVNSESLELLKKSG 274
++NV++L IQ+GL+LSD +GN P N WQFNF F+V + +S+ELL+KS
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135
Query: 275 VILERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKED 334
+ LE++ + GVD FA+L+M SG++LND++ W+++H YD+G+L+ L +P D
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISD 195
Query: 335 FEWWVQKYIPTSYDLNLI 352
F ++K+ P YD+ +
Sbjct: 196 FFDQMEKFFPVVYDIKYL 213
>At5g22250 [A] KOG0304 mRNA deadenylase subunit
Length = 278
Score = 146 bits (368), Expect = 7e-35
Identities = 74/181 (40%), Positives = 116/181 (63%), Gaps = 8/181 (4%)
Query: 163 LLIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNF--RSKTDYHYQTMRS 220
++IR+VW N+ EF +IR ++E Y IS+ TEF G I + + R +Y Y ++S
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71
Query: 221 NVDLLTPIQIGLSLSDLQGNKPD-----NFPSTWQFNFH-FDVTKETVNSESLELLKKSG 274
NVD L+ IQ+GL+LSD GN PD N W+FNF FDV ++ +S+ELL++ G
Sbjct: 72 NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131
Query: 275 VILERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKED 334
+ ER+++ GV+ + FA+LMM SGL+ N+ V+W+++H+AYD+G+L+ L +P +
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191
Query: 335 F 335
F
Sbjct: 192 F 192
>At3g44260 [A] KOG0304 mRNA deadenylase subunit
Length = 280
Score = 143 bits (361), Expect = 5e-34
Identities = 72/180 (40%), Positives = 117/180 (65%), Gaps = 7/180 (3%)
Query: 163 LLIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNV 222
++ REVW N+ EF +I ++I+ Y IS+ TEF G I + F + D Y +++NV
Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTLLKANV 75
Query: 223 DLLTPIQIGLSLSDLQGNKPD-----NFPSTWQFNFH-FDVTKETVNSESLELLKKSGVI 276
D L+ IQ+GL+LSD+ GN PD + W+FNF FDV ++ +S+ELL++ G+
Sbjct: 76 DALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGID 135
Query: 277 LERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFE 336
ER+ ++GV+ + FA+LMM SGL+ N+EV+W+++H+AYD+G+L+ L +P +F+
Sbjct: 136 FERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFK 195
>CE22588 [A] KOG0304 mRNA deadenylase subunit
Length = 310
Score = 140 bits (354), Expect = 3e-33
Identities = 65/195 (33%), Positives = 116/195 (59%), Gaps = 1/195 (0%)
Query: 158 SSPAHLLIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQT 217
S + I V+ +NV EFA IR +E Y +++ TEF G +A P+G FRSK D++YQ
Sbjct: 16 SGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQ 75
Query: 218 MRSNVDLLTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVIL 277
+ NV++L IQ+G ++ + +G P WQFNF+F ++ + ES+E+L+++G+
Sbjct: 76 VFCNVNMLKLIQVGFAMVNDKGELPPT-GDVWQFNFNFSFAEDMFSHESVEMLRQAGIDF 134
Query: 278 ERHQQNGVDFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEW 337
Q NG+ F +L+ SGL+ + +TW+++ + YD+G+L+ + ++P + F
Sbjct: 135 TLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFM 194
Query: 338 WVQKYIPTSYDLNLI 352
+ PTS+D+ ++
Sbjct: 195 CHKTLFPTSFDIKIL 209
>Hs17433778_2 [A] KOG0304 mRNA deadenylase subunit
Length = 125
Score = 93.6 bits (231), Expect = 5e-19
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 156 PISSPAHL-LIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYH 214
P ++ AH I EVW N++ E IR++I +Y +++ TEF G +ARPI RS DY
Sbjct: 1 PAATVAHSPRICEVWACNLDEEMKKIRQVIRKYHYVAMVTEFPGVVARPIRELRSNPDYQ 60
Query: 215 YQTMRSNVDLLTPIQIGLSLSDLQGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSG 274
YQ ++ NVD L IQ+GL+ + QG P STWQ NF F++ ++ S+ELL S
Sbjct: 61 YQLLQCNVDFLKIIQLGLTFMNEQGEYPPG-TSTWQLNFKFNLMEDMHAQHSIELLTTSD 119
Query: 275 VILERH 280
+ ++H
Sbjct: 120 IQYKKH 125
>At1g27820 [A] KOG0304 mRNA deadenylase subunit
Length = 310
Score = 83.2 bits (204), Expect = 7e-16
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 167 EVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLT 226
EVW+ N E IR ++ I+I TEF G + + + Y+ M+ NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 227 PIQIGLSLSDLQGNKPDNFPSTWQFNFH-FDVTKETVNSESLELLKKSGVILERHQQNGV 285
IQ+G +L D +G F TW+ N FD K N +S+ LK +G+ L++ ++ G+
Sbjct: 66 LIQLGFTLFDRRG-----FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI 120
Query: 286 DFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTN-MPNNKEDFEWWVQKYI 343
DEF + + ++TW+++ +YD +L+ L +P KE+F VQ+ +
Sbjct: 121 GIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLL 179
>At1g06450 [A] KOG0304 mRNA deadenylase subunit
Length = 360
Score = 81.3 bits (199), Expect = 3e-15
Identities = 54/193 (27%), Positives = 99/193 (50%), Gaps = 12/193 (6%)
Query: 164 LIREVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVD 223
L R VW++NV+ E A + + ++++ +I+ TE+ G I R F S +D Y+ M+ NV+
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVE 65
Query: 224 LLTPIQIGLSLSDLQGNKPDNFPSTWQFNF-HFDVTKETVNSESLELLKKSGVILERHQQ 282
IQ G +L + +G W+ NF +F +T N S+E L++ G+ L++ +
Sbjct: 66 NTKLIQCGFTLFNAKG----EIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRD 121
Query: 283 NGVD---FDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWV 339
GVD + F +LM + V ++++ AYD+ + ++ L + +P +F V
Sbjct: 122 EGVDMFGYGFFPKLM--TVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEV 179
Query: 340 QKYIPTSYDLNLI 352
K YD ++
Sbjct: 180 VKVFGQVYDTKVM 192
>At3g44240 [A] KOG0304 mRNA deadenylase subunit
Length = 239
Score = 79.0 bits (193), Expect = 1e-14
Identities = 45/175 (25%), Positives = 84/175 (47%), Gaps = 6/175 (3%)
Query: 178 AIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLTPIQIGLSLSDL 237
++I + Y+ I+I TEF T+ + + + Y M +VD IQ+GL+L D+
Sbjct: 2 SLIEDCLRSYRFIAIDTEFPSTLRETTQH--ATDEERYMDMSFSVDRAKLIQLGLTLFDI 59
Query: 238 QGNKPDNFPSTWQFNFHFDVTKETVNSESLELLKKSGVILERHQQNGVDFDEFAQLMMDS 297
G TW+ NF + N +S+E L+++G+ L + ++ G+ + F M
Sbjct: 60 NGR----IGGTWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWM 115
Query: 298 GLLLNDEVTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKYIPTSYDLNLI 352
+TW+++H +YD +L+ +P E F V + + + YDL ++
Sbjct: 116 LKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVM 170
>At1g61470 [A] KOG0304 mRNA deadenylase subunit
Length = 278
Score = 77.0 bits (188), Expect = 5e-14
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 15/181 (8%)
Query: 167 EVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLT 226
EVW+ N E IR ++ I+I TEF G + + + Y+ M+ NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 227 PIQIGLSLSDLQGNKPDNFPSTWQFNFH-FDVTKETVNSESLELLKKSGVILERHQQNGV 285
IQ+GL+L TW+ N F+ +K N +S+ LK +G+ L++ ++ G+
Sbjct: 62 LIQLGLTLFG------KGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115
Query: 286 DFDEFAQLMMDSGLLLNDE---VTWISYHAAYDYGFLINRLMNTNMPNNKEDFEWWVQKY 342
+EF M+ +LN++ + W+++ +YD +L+ L +P ++F+ VQ+
Sbjct: 116 GIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQL 172
Query: 343 I 343
+
Sbjct: 173 L 173
>At1g27890 [A] KOG0304 mRNA deadenylase subunit
Length = 302
Score = 76.6 bits (187), Expect = 7e-14
Identities = 49/179 (27%), Positives = 88/179 (48%), Gaps = 9/179 (5%)
Query: 167 EVWQNNVNFEFAIIRKMIEQYKVISISTEFVGTIARPIGNFRSKTDYHYQTMRSNVDLLT 226
EVW+ N E IR ++ + I+I TEF G + + + Y+ M+ NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 227 PIQIGLSLSDLQGNKPDNFPSTWQFNF-HFDVTKETVNSESLELLKKSGVILERHQQNGV 285
IQ+G +L D +G TW+ N F+ K N +S+ LK +G+ L++ + G+
Sbjct: 61 LIQLGFTLFDRRG-----ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGI 115
Query: 286 DFDEFAQLMMDSGLLLNDEVTWISYHAAYDYGFLINRLMNTN-MPNNKEDFEWWVQKYI 343
+EF + + ++TW+++ +YD +L+ L +P KE+F V++ +
Sbjct: 116 GIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLL 174
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,316,908
Number of Sequences: 60738
Number of extensions: 898087
Number of successful extensions: 2059
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2010
Number of HSP's gapped (non-prelim): 22
length of query: 447
length of database: 30,389,216
effective HSP length: 110
effective length of query: 337
effective length of database: 23,708,036
effective search space: 7989608132
effective search space used: 7989608132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)