ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4726 good K KOG3152 Transcription TBP-binding protein, activator of basal transcription (contains rrm motif)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4726 1674717 1673839 -293
(293 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR054c [K] KOG3152 TBP-binding protein activator of basal trans... 274 1e-73
SPBC28E12.05 [K] KOG3152 TBP-binding protein activator of basal ... 165 8e-41
At3g56510 [K] KOG3152 TBP-binding protein activator of basal tra... 116 3e-26
7291002 [K] KOG3152 TBP-binding protein activator of basal trans... 97 2e-20
Hs7019319 [K] KOG3152 TBP-binding protein activator of basal tra... 93 5e-19
CE11312 [K] KOG3152 TBP-binding protein activator of basal trans... 87 3e-17
7292929 [K] KOG3152 TBP-binding protein activator of basal trans... 64 3e-10
7291003 [K] KOG3152 TBP-binding protein activator of basal trans... 56 5e-08
>YNR054c [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 316
Score = 274 bits (701), Expect = 1e-73
Identities = 132/202 (65%), Positives = 159/202 (78%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAE 150
GVVY S +PPYMKPAK+RQILTRFGEVDRLFLK+E++ K++QRVK GGNKK +EEGWAE
Sbjct: 114 GVVYFSSIPPYMKPAKMRQILTRFGEVDRLFLKKEDDQKYKQRVKGGGNKKNKYEEGWAE 173
Query: 151 FIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQAKL 210
FIRK+DAKLCA TL FYHDD++NVKYLPGFKWADLTEQIARENDIRQAKL
Sbjct: 174 FIRKRDAKLCAETLNGNIIGGKKGTFYHDDILNVKYLPGFKWADLTEQIARENDIRQAKL 233
Query: 211 QLEISQANKLNAEFIHNVEKSKMVNKMKQSKKRNQQESQQVDEEVRRTFKQRKVASTRAS 270
++EISQANKLNAEFI NVE+SKM+ +K S+KR +E + D R FKQR+V ++RA+
Sbjct: 234 EMEISQANKLNAEFIRNVEQSKMIQNIKNSRKRAGKEGESADSHPHREFKQRRVETSRAN 293
Query: 271 APDSQRQSQPQSKALNDVMHSL 292
AP +Q SK L +V+ +L
Sbjct: 294 APSDIKQQSSGSKDLGNVLTNL 315
>SPBC28E12.05 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 334
Score = 165 bits (417), Expect = 8e-41
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 19/209 (9%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAE 150
GV+YLSR+PPYM P KLRQIL+++G++ R++L E K QR+++GGNK+ M+EEGW E
Sbjct: 122 GVIYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMYEEGWIE 181
Query: 151 FIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQAKL 210
F K+ AK A L +YHDD+ N+KYLP FKW LTEQIA EN R+++L
Sbjct: 182 FESKRVAKSVAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRL 241
Query: 211 QLEISQANKLNAEFIHNVEKSKMVNKMKQSKKRNQQESQQVDEE---------------- 254
++EI Q K +++ NVE +KM+ ++ KKR+++++ V E
Sbjct: 242 KVEIEQGRKQLKQYMRNVENAKMIEGIR--KKRSERDTLNVSTEFPEETKDLSEDTKPSK 299
Query: 255 -VRRTFKQRKVASTRASAPDSQRQSQPQS 282
RR F Q+ + S R D+ +Q + ++
Sbjct: 300 QARRFFGQKSIVSNRNMPTDNAKQQKVEN 328
>At3g56510 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 266
Score = 116 bits (291), Expect = 3e-26
Identities = 69/214 (32%), Positives = 105/214 (48%), Gaps = 11/214 (5%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKRE---------EEHKHQQRVKSGGNKK 141
GV YLSR+PP+M +LR IL ++GE+ R++L E + R ++GG +
Sbjct: 50 GVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEADTFVYCYSDSEAQVHRKRAGGFRG 109
Query: 142 TMFEEGWAEFIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIAR 201
F EGW EF +K AK A L + D+ N+KYL FKW DLTE+IA
Sbjct: 110 QRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKSSVYYDIWNIKYLTKFKWDDLTEEIAY 169
Query: 202 ENDIRQAKLQLEISQANKLNAEFIHNVEKSKMVNKM--KQSKKRNQQESQQVDEEVRRTF 259
++ IR+ KL + +S A + ++ +EKS+ + ++ + KKR QE + E F
Sbjct: 170 KSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKRKIQEESGSNAEAAPVF 229
Query: 260 KQRKVASTRASAPDSQRQSQPQSKALNDVMHSLF 293
R + R SQ + D + S+F
Sbjct: 230 PPRAIFQFRQKKSIENETSQSKPGLSTDFLASVF 263
>7291002 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 239
Score = 97.4 bits (241), Expect = 2e-20
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAE 150
G++Y+S +P +M +LR+IL +G + R++L+ E+ + + F EGW E
Sbjct: 74 GIIYISNIPKHMNVTRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIHFTEGWVE 133
Query: 151 FIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQAKL 210
F K+ AK L ++D + ++KYLP FKW LTE++ E + + +L
Sbjct: 134 FKSKRVAKQIVPLLNNKQISGRKTSQFYDSLWSMKYLPRFKWVHLTERMNYEQAVHKQRL 193
Query: 211 QLEISQANKLNAEFIHNVEKSKMVNKMKQSKKRNQQE 247
E+SQA K F +N++KS+ + KQ+KK E
Sbjct: 194 HTEVSQARKETTFFQNNLDKSEFIR--KQAKKAKNAE 228
>Hs7019319 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 272
Score = 92.8 bits (229), Expect = 5e-19
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 8/200 (4%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEE---HKHQQRVKSGGNKKTM---F 144
G+VYL +PP +P +R +L+ +GEV R+F + E+ K + +GG K++ +
Sbjct: 46 GIVYLGHIPPRFRPLHVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDY 105
Query: 145 EEGWAEFIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIAREND 204
EGW EF K+ AK A++L + D+ N+KYL F W+ L+E +A E
Sbjct: 106 TEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQ 165
Query: 205 IRQAKLQLEISQANKLNAEFIHNVEKSKMVNKMKQSKKRNQQESQQVDEEVRRTFKQRKV 264
+R+ +L+ E++QA + ++ +VE+ + R + + RK
Sbjct: 166 VRRQRLRAEVAQAKRETDFYLQSVERGQRFLAADGDPARPDGSWTFAQRPTEQELRARKA 225
Query: 265 ASTRASAPDSQRQSQPQSKA 284
A R + R + Q KA
Sbjct: 226 A--RPGGRERARLATAQDKA 243
>CE11312 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 268
Score = 87.0 bits (214), Expect = 3e-17
Identities = 51/189 (26%), Positives = 91/189 (47%), Gaps = 13/189 (6%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRF--GEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGW 148
GVV+ S +PP ++R+ + G+V R+FL R + K N + ++ EGW
Sbjct: 82 GVVFFSTIPPKYNVVRMREYFEKRCPGQVGRIFLARNKHSK---------NPQYLYSEGW 132
Query: 149 AEFIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQA 208
E +KK AK A + + N++YL GFKW L EQ+ E ++ +
Sbjct: 133 MELKKKKIAKAIAEQIDNTPIGGKNKDPVSSMLWNIRYLSGFKWVHLMEQLQYEKEVEKR 192
Query: 209 KLQLEISQANKLNAEFIHNVEKSKMVNKM--KQSKKRNQQESQQVDEEVRRTFKQRKVAS 266
++ +E++QA ++ A F +EK K + K+ K + + + Q D + ++ K +K S
Sbjct: 193 RMNVEVAQARRIAAHFEEQIEKGKHLRKLEAKVTASGGKWDKFQRDVQQKKVVKVKKERS 252
Query: 267 TRASAPDSQ 275
+ S+
Sbjct: 253 KHVNTESSE 261
>7292929 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 210
Score = 63.5 bits (153), Expect = 3e-10
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAE 150
GV+Y+S +P +M +LR+IL +G + R FL+ ++ + +F EGW E
Sbjct: 65 GVIYISNLPKHMTLTRLREILGEYGAIGRAFLRSQKLSRKPHNF--------LFAEGWVE 116
Query: 151 FIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQAKL 210
F K+ AK L ++ + ++YLP FKWA L E + N +
Sbjct: 117 FKSKRVAKQIVPLLNYKQISTHKKSPFYYSLWIMEYLPRFKWARLNELM---NIVPVTNS 173
Query: 211 QLEISQANKLNAEFIHNVEKSKMVNKMKQSKK 242
Q + NK K+K K+K++KK
Sbjct: 174 QNHLKFLNK----------KAKKAKKVKKAKK 195
>7291003 [K] KOG3152 TBP-binding protein activator of basal transcription
(contains rrm motif)
Length = 233
Score = 56.2 bits (134), Expect = 5e-08
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 91 GVVYLSRVPPYMKPAKLRQILTRFGEVDRLFLKREEEHKHQQRVKSGGNKKTMFEEGWAE 150
GV+ +S +P M L++I+ V R++++ E + S KK M +GW E
Sbjct: 61 GVILISNIPKDMDGDCLKEIMNLHSVVGRVYVQPET-------LSSFKTKKNM-RKGWVE 112
Query: 151 FIRKKDAKLCASTLXXXXXXXXXXXFYHDDVMNVKYLPGFKWADLTEQIARENDIRQAKL 210
FI K AK A L + + +K+LP FKW LT+++ E + + ++
Sbjct: 113 FISKSGAKKIALELNNKPITDGKSSRFRGLLWKMKFLPRFKWYYLTDRMDYELAVCKVRV 172
Query: 211 QLEISQANKLNAEFIHNVEK----SKMVNKMKQSKKRNQQE 247
SQA K A F ++ ++ K V KMK+ KK + E
Sbjct: 173 W---SQARK-RATFWYDPDQMEYFKKQVKKMKKMKKVKEAE 209
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.129 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,069,655
Number of Sequences: 60738
Number of extensions: 443250
Number of successful extensions: 3625
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3612
Number of HSP's gapped (non-prelim): 9
length of query: 293
length of database: 30,389,216
effective HSP length: 105
effective length of query: 188
effective length of database: 24,011,726
effective search space: 4514204488
effective search space used: 4514204488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)