ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII4902 check: MH R KOG0017 General function prediction only FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII4902 1737062 1737634 191
(191 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR192c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re... 130 1e-30
YOR071c [FH] KOG2466 Uridine permease/thiamine transporter/allan... 128 4e-30
YLR237w [FH] KOG2466 Uridine permease/thiamine transporter/allan... 126 2e-29
YIR028w [FH] KOG2466 Uridine permease/thiamine transporter/allan... 61 8e-10
SPAC1399.03 [FH] KOG2466 Uridine permease/thiamine transporter/a... 61 8e-10
SPAC29B12.14c [FH] KOG2466 Uridine permease/thiamine transporter... 58 7e-09
YBL042c [FH] KOG2466 Uridine permease/thiamine transporter/allan... 57 1e-08
At5g03560_2 [FH] KOG2466 Uridine permease/thiamine transporter/a... 57 2e-08
YBR021w [FH] KOG2466 Uridine permease/thiamine transporter/allan... 56 3e-08
SPBC1683.05 [FH] KOG2466 Uridine permease/thiamine transporter/a... 53 2e-07
>YOR192c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 599
Score = 130 bits (326), Expect = 1e-30
Identities = 63/138 (45%), Positives = 96/138 (68%), Gaps = 1/138 (0%)
Query: 44 TSWSKFLKMIEVPHQGKA-LSVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTG 102
T S+ L+ +E+P + +A ++ LRNPDL PI ++TWGFWS FAYWG+ +F+V + G
Sbjct: 5 TRISRALRFLEIPVKNRASVNFLRNPDLQPIKSVNQTWGFWSNFAYWGVLSFNVGMWIGG 64
Query: 103 SALLALNLNVQQSIGALVIANVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGII 162
S+ L + L+ ++IGA +IA++L A+ NS PG +++G+TL QR +FGI+GS +GII
Sbjct: 65 SSALTVGLSYSETIGAFIIADLLTILFALANSCPGYDWKVGFTLAQRFVFGIYGSALGII 124
Query: 163 FRVGLSIVMYAFLSWLVG 180
R+ +SIV Y +WL G
Sbjct: 125 IRILMSIVYYGSNAWLGG 142
>YOR071c [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 598
Score = 128 bits (322), Expect = 4e-30
Identities = 63/138 (45%), Positives = 93/138 (66%), Gaps = 1/138 (0%)
Query: 47 SKFLKMIEVPHQGK-ALSVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSAL 105
SKFL+ +E+P + + A++ LRNPDL PI ++TWGFWS AYWG +F+ T+ +GSA
Sbjct: 8 SKFLRYLEIPAKNRTAVNFLRNPDLQPIKSANQTWGFWSNLAYWGAVSFTAGTWMSGSAA 67
Query: 106 LALNLNVQQSIGALVIANVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRV 165
L++ L+ ++I + ++ NVL + NS PG ++IG+TL QR +FGI+GS GII R+
Sbjct: 68 LSVGLSYPETIVSFLLGNVLTIIFTMANSYPGYDWKIGFTLAQRFVFGIYGSAFGIIIRI 127
Query: 166 GLSIVMYAFLSWLVGEEI 183
+SIV Y +WL G I
Sbjct: 128 LMSIVNYGSNAWLGGLSI 145
>YLR237w [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 598
Score = 126 bits (316), Expect = 2e-29
Identities = 59/135 (43%), Positives = 92/135 (67%), Gaps = 1/135 (0%)
Query: 47 SKFLKMIEVPHQGKA-LSVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSAL 105
S+ L+ +E+P + +A +S L+NPDL PI ++TWGFWS FAYWG+ +FSV T+ + S+
Sbjct: 8 SRALRFLEIPVKDRASVSFLKNPDLQPIKSANQTWGFWSNFAYWGVMSFSVGTWMSASSA 67
Query: 106 LALNLNVQQSIGALVIANVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRV 165
L + L+ ++IG ++ +VL + NS PG +++G+TL QR +FGI+GS GII R+
Sbjct: 68 LGVGLSYPETIGTFIVGDVLTIIFTLANSCPGYDWKVGFTLAQRFVFGIYGSAFGIIIRI 127
Query: 166 GLSIVMYAFLSWLVG 180
+SIV Y +W+ G
Sbjct: 128 LMSIVNYGSNAWVGG 142
>YIR028w [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 635
Score = 61.2 bits (147), Expect = 8e-10
Identities = 46/165 (27%), Positives = 73/165 (43%), Gaps = 10/165 (6%)
Query: 24 NEDVQIVLDQKKLEHGE-----EAVTSWSKFLK---MIEVPHQGKAL--SVLRNPDLDPI 73
N + + +D +E E E + WSK +++ +L S L N DL P+
Sbjct: 47 NINTNVYVDNSSIEESEVVPLPETKSIWSKIYYDFIVLDKTTLNVSLKESFLYNRDLKPV 106
Query: 74 AVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQSIGALVIANVLIAGLAILN 133
+ R W ++++ +W F++ T+ L L LN Q + I +LN
Sbjct: 107 EEERRCWSWFNYLYFWLADCFNINTWQIAGTGLQLGLNWWQCWLTVWIGYTFAGIFVVLN 166
Query: 134 SNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMYAFLSWL 178
S G Y + + + R FGI S II RV ++IV YA +WL
Sbjct: 167 SRFGSAYHLSFPITVRASFGIFFSMWPIINRVVMAIVWYAVQAWL 211
>SPAC1399.03 [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 581
Score = 61.2 bits (147), Expect = 8e-10
Identities = 35/126 (27%), Positives = 57/126 (44%)
Query: 56 PHQGKALSVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQS 115
P A +L N DL P+ R WG W+F ++W ++ T+ + + L LN ++
Sbjct: 32 PGMTMAERMLTNKDLYPVPPSKRLWGPWNFISFWLADAVNINTWMISATAIELGLNWWEA 91
Query: 116 IGALVIANVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMYAFL 175
+ + ++ L PG Y I + + R FG GS I+ R L+ V Y
Sbjct: 92 WICVWVGYLICGILVATTGRPGAVYHISFPVLSRSSFGTWGSLWPILNRSVLACVWYGVQ 151
Query: 176 SWLVGE 181
+W+ GE
Sbjct: 152 AWIGGE 157
>SPAC29B12.14c [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 581
Score = 58.2 bits (139), Expect = 7e-09
Identities = 36/139 (25%), Positives = 60/139 (42%), Gaps = 3/139 (2%)
Query: 46 WSKFLKMIEV---PHQGKALSVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTG 102
W F I + P A L N DL P+ R WG W++ A+W + +V T+
Sbjct: 17 WRNFKNFIVIEAKPGTTLAERFLTNEDLYPVPKSQRVWGPWNYVAFWLADSVNVNTWMIA 76
Query: 103 SALLALNLNVQQSIGALVIANVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGII 162
+ L+ ++ + + + A + + G Y I + + R FGI GS I+
Sbjct: 77 GTAVESGLSWWEAWITVWVGYTIAAFILTIAGRAGAVYHISFPVLSRSSFGIWGSLWPIL 136
Query: 163 FRVGLSIVMYAFLSWLVGE 181
R ++ V Y +W+ GE
Sbjct: 137 NRAVMACVWYGVQAWIGGE 155
>YBL042c [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 639
Score = 57.4 bits (137), Expect = 1e-08
Identities = 34/114 (29%), Positives = 58/114 (50%)
Query: 65 LRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQSIGALVIANV 124
L N DL P+ + RTW + + +W +F+V T+ + L L LN Q+ + +
Sbjct: 112 LYNTDLRPVEAKRRTWTWKQYIFFWISGSFNVNTWQISATGLQLGLNWWQTWICIWVGYT 171
Query: 125 LIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMYAFLSWL 178
+A IL S G Y I + + R+ FGI+ S +I RV ++ V + L+++
Sbjct: 172 FVAFFLILGSKVGNNYHISFPISSRVSFGIYFSIWIVINRVVMACVWNSTLAYI 225
>At5g03560_2 [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 483
Score = 57.0 bits (136), Expect = 2e-08
Identities = 33/119 (27%), Positives = 55/119 (45%)
Query: 65 LRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQSIGALVIANV 124
L N DL P RT+ + + W V T+ +L+ L + Q I +V AN+
Sbjct: 1 LTNDDLKPTTPSQRTFSWLDMSSLWIGLVVGVPTYYLAGSLVDLGMAWWQGIATVVTANL 60
Query: 125 LIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMYAFLSWLVGEEI 183
++ +L + PG Y I + + R FGI G+++ + R + Y +W+ GE I
Sbjct: 61 ILLVPLVLTAQPGTLYGISFPVLARSSFGIRGAHIPTLLRALVGCGWYGIETWIGGEAI 119
>YBR021w [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 633
Score = 56.2 bits (134), Expect = 3e-08
Identities = 31/121 (25%), Positives = 57/121 (46%)
Query: 63 SVLRNPDLDPIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQSIGALVIA 122
S + N DL P+ + R W ++++ +W F++ T+ + L L LN Q + I
Sbjct: 94 SFMYNQDLKPVEKERRVWSWYNYCYFWLAECFNINTWQIAATGLQLGLNWWQCWITIWIG 153
Query: 123 NVLIAGLAILNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMYAFLSWLVGEE 182
+ +L S G Y + + + R FGI S +I RV ++IV Y+ +++
Sbjct: 154 YGFVGAFVVLASRVGSAYHLSFPISSRASFGIFFSLWPVINRVVMAIVWYSVQAYIAATP 213
Query: 183 I 183
+
Sbjct: 214 V 214
>SPBC1683.05 [FH] KOG2466 Uridine permease/thiamine transporter/allantoin
transport
Length = 559
Score = 53.1 bits (126), Expect = 2e-07
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 23 SNEDVQIVLDQKKLEHGEEAVTSWSKFLKMIEVPHQGKALSVLR-----------NPDLD 71
S+E I + +K L+ G +S ++VP +G+ S L+ N DL
Sbjct: 6 SDEKFDIGISEKNLDVGFGESSS-------VDVPVKGRFASFLKKLELSSGPEKENIDLR 58
Query: 72 PIAVQDRTWGFWSFFAYWGLPNFSVATFSTGSALLALNLNVQQSIGALVIANVLIAGLAI 131
P R + W S + F TG++ + + L+ +Q++ AL+ NV IA
Sbjct: 59 PTPPDRRHYSALDIIYLWSCNGISASAFRTGTSYMEMGLSPKQALAALIAGNVFIAMPMT 118
Query: 132 LNSNPGIKYRIGYTLDQRMIFGIHGSYVGIIFRVGLSIVMY 172
LN G Y I + + R FG + + + I+ R + Y
Sbjct: 119 LNGLFGSHYHIPFAVQSRASFGYYFNTLIILLRFIAGLFYY 159
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,641,899
Number of Sequences: 60738
Number of extensions: 394554
Number of successful extensions: 856
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 14
length of query: 191
length of database: 30,389,216
effective HSP length: 100
effective length of query: 91
effective length of database: 24,315,416
effective search space: 2212702856
effective search space used: 2212702856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)