ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0138 good LT KOG0133 Replication, recombination and repair Deoxyribodipyrimidine photolyase/cryptochrome
r_klactIV0138 good LT KOG0133 Signal transduction mechanisms Deoxyribodipyrimidine photolyase/cryptochrome
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0138 41415 43199 595
(595 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR386w [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome 499 e-141
At5g24850 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoch... 117 4e-26
At1g04400 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoch... 117 4e-26
At4g08920 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoch... 110 6e-24
At3g15620 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoch... 96 2e-19
7298691 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome 96 2e-19
Hs17472965 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoc... 76 2e-13
Hs4758072 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptoch... 74 6e-13
7300494 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome 61 4e-09
>YOR386w [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 565
Score = 499 bits (1286), Expect = e-141
Identities = 253/594 (42%), Positives = 359/594 (59%), Gaps = 56/594 (9%)
Query: 9 IKKNVSECLSPNPVYYRNPITFKKANEFNNGKRERPLALLGDSIHADSKNSRQQLDDTVD 68
I+ + + S N YY PIT AN+FNN R +P+ ++ K ++Q +
Sbjct: 21 IEHDFEQYHSLNKKYYPRPITRTGANQFNNKSRAKPMEIV-------EKLQKKQKTSFEN 73
Query: 69 NRLVIHWFRGDLRVRDNTGLAYAL-------NQSKSGSVEALYVINEHDWIAHMESGWKL 121
V+HWFR DLR+ DN GL ++ ++ + A+YVINE DW AHM+SGWKL
Sbjct: 74 VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133
Query: 122 KFQLDALRSLSRELAKLGVRLHVKYFIPESPCLSNSREYAQWFSHIIEEIAASKNYDGNS 181
F + AL++L + LA+L + L + F LSNS+E+ ++F
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFF----------------- 176
Query: 182 XXXXXXXXXXXEPALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRDLKICRLQTQSS 241
K+ N G+ I +TAN++Y+ DELYRD+++ +
Sbjct: 177 -------------------KEKCMNVSSGTGTI-ITANIEYQTDELYRDIRLLE-----N 211
Query: 242 NSANFTLKLFHDMCIIEPGILKTGKGSQYTIFTPWYKKWVSFLEANQKDKHTICIEASIP 301
LK +HD CI+ PG++ T +G+ Y++FTPWYKKWV ++ +K IC I
Sbjct: 212 EDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYKKSTSEICHLHIIE 271
Query: 302 QSSNREKVNPEEIKYQLPDKFMSEMPEQTLNIPKADEETALKKLTEFISKRASKYNNDKX 361
E + +Y LPD+F+ +P+ +P EE AL +L +F+ ++SKYNN+K
Sbjct: 272 PLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKDFLGTKSSKYNNEKD 331
Query: 362 XXXXXXXXXXXCYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFY 421
Y+T+G IS R I+NQ++Q+ N ++M+K +K N+S + FIKEVAWRDFY
Sbjct: 332 MLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSSTQNFIKEVAWRDFY 391
Query: 422 KHAISYWPFLSMDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINN 481
+H + WP+ SM +P++ +TL+IKWEN+ FEKWC G TGIPIVDAIM K+L TGYINN
Sbjct: 392 RHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINN 451
Query: 482 RSRMITASFLAKNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNM 541
RSRMITASFL+KNLLIDWRWGERWF KHLID D++SNVGGWGFC+STGID QPYFRVFNM
Sbjct: 452 RSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNM 511
Query: 542 KLQSEKYDPEGKFIRHWLENDENDSDNVHEPKPNAIVDLRDSRERVLERFREVM 595
+Q++KYDP+ F++ W+ + + E P +VDL+ SRER L+ +++ M
Sbjct: 512 DIQAKKYDPQMIFVKQWVPELISSENKRPENYPKPLVDLKHSRERALKVYKDAM 565
>At5g24850 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 569
Score = 117 bits (294), Expect = 4e-26
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 374 YVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLSM 433
++ G IS R I + + R+ N NS + E+ WRD+++ FLS+
Sbjct: 335 WLAFGCISPRFIYEEVQRYEKERVAN------NSTYWVLFELIWRDYFR-------FLSI 381
Query: 434 DLPFKFETL----NI--KWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMIT 487
L N+ KW D LFE W +TG P++DA M ++ TG+++NR R I
Sbjct: 382 KCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIV 441
Query: 488 ASFLAKNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEK 547
SFL +++ +DWR G WF L+DYD SN G W + A G D + R F++ Q++
Sbjct: 442 CSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQN 500
Query: 548 YDPEGKFIRHWLE 560
YDPEG+++ WL+
Sbjct: 501 YDPEGEYVAFWLQ 513
>At1g04400 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 612
Score = 117 bits (294), Expect = 4e-26
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 343 KKLTEFISKRASKYNNDKXXXXXXXXXXXXCYVTSGVISARTILNQSYQANNSRLMNKDI 402
K L EFI K+ Y + Y+ G IS R + + +K+
Sbjct: 219 KLLNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNS 278
Query: 403 KKNNSLETFIKEVAWRDFYKHAISYWPFL---SMDLPFKFETLNIKWENDVFLFEKWCYG 459
+ S + F++ + R++ ++ +PF S+ +F W+ DV F+ W G
Sbjct: 279 EGEESADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRF----FPWDADVDKFKAWRQG 334
Query: 460 ETGIPIVDAIMLKMLKTGYINNRSRMITASFLAKNLLIDWRWGERWFRKHLIDYDTASNV 519
TG P+VDA M ++ TG+++NR R+I +SF K LL+ W+WG ++F L+D D ++
Sbjct: 335 RTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDI 394
Query: 520 GGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEGKFIRHWL-ENDENDSDNVHEP 572
GW + + + D R+ N LQ KYDPEG++IR WL E ++ +H P
Sbjct: 395 LGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHP 448
>At4g08920 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 716
Score = 110 bits (275), Expect = 6e-24
Identities = 65/236 (27%), Positives = 114/236 (47%), Gaps = 12/236 (5%)
Query: 343 KKLTEFISKRASKYNNDKXXXXXXXXXXXXCYVTSGVISARTI-----LNQSYQANNSRL 397
K LT FI+ +Y+ ++ ++ G +S R + + Q AN
Sbjct: 222 KALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNE 281
Query: 398 MNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLSMDLPFKFETLNIKWENDVFLFEKWC 457
++ S+ F+K + R++ ++ P+ S + P W D F+ W
Sbjct: 282 AGEE-----SVNLFLKSIGLREYSRYISFNHPY-SHERPLLGHLKFFPWAVDENYFKAWR 335
Query: 458 YGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAKNLLIDWRWGERWFRKHLIDYDTAS 517
G TG P+VDA M ++ TG++++R R++ +SF K L + WRWG ++F L+D D S
Sbjct: 336 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 395
Query: 518 NVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEGKFIRHWL-ENDENDSDNVHEP 572
+ GW + T D + + R+ N + + K+DP G+++R WL E +D +H P
Sbjct: 396 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHP 451
>At3g15620 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 537
Score = 95.9 bits (237), Expect = 2e-19
Identities = 72/236 (30%), Positives = 111/236 (46%), Gaps = 23/236 (9%)
Query: 335 KADEETALKKLTEFISKRA-----SKYNNDKXXXXXXXXXXXXCYVTSGVISARTILNQS 389
+ E ALK+LT+ IS +A K D Y+ G +S+R
Sbjct: 219 RGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYF---- 274
Query: 390 YQANNSRLMNKDIKKNNSLE-TFIKEVAWRDFYKHAISYWPFLSMDLPFKFETLNIKWEN 448
YQ + + KD+KK+ S + + ++ WR+F+ P + I W
Sbjct: 275 YQCLQN--IYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRI-CKQIPWNE 331
Query: 449 DVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAK-NLLIDWRWGERWFR 507
D + W G+TG P +DAIM+++LK G++++ +R A FL + +L I W G F
Sbjct: 332 DHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFE 391
Query: 508 KHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQ----SEKYDPEGKFIRHWL 559
+ LID D A N G W + + C +F FN +KYDP+GK+IRH+L
Sbjct: 392 RLLIDSDWAINNGNWMW-----LSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFL 442
>7298691 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 540
Score = 95.9 bits (237), Expect = 2e-19
Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 9/210 (4%)
Query: 374 YVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLSM 433
Y+ G +SAR + NQ + ++ + K + + I ++ WR+FY + P
Sbjct: 264 YLKFGCLSAR-LFNQKLK----EIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDR 318
Query: 434 DLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAK 493
L + + I W+ E W +G TG P +DAIM ++ + G+I++ +R A FL +
Sbjct: 319 MLGNVY-CMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTR 377
Query: 494 -NLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEG 552
+L I W G+R F + L+D D A N G W + +++ Q YFRV++ +K DP+G
Sbjct: 378 GDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQG 436
Query: 553 KFIRHWL-ENDENDSDNVHEPKPNAIVDLR 581
+IR ++ E + + ++EP ++VD R
Sbjct: 437 HYIRKYVPELSKYPAGCIYEPWKASLVDQR 466
>Hs17472965 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 593
Score = 75.9 bits (185), Expect = 2e-13
Identities = 65/292 (22%), Positives = 128/292 (43%), Gaps = 17/292 (5%)
Query: 277 YKKWVSFLEANQKDKHTICIEASIPQSSNREKVNPEEIK-YQLPDKFMSEMPEQTLN--I 333
YK++ + + + K + + S S R ++ + Y +P P + L +
Sbjct: 169 YKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAV 228
Query: 334 PKADEETALKKLTEFISKRASKYNNDK----XXXXXXXXXXXXCYVTSGVISARTILNQS 389
+ E AL +L + + ++A N ++ Y+ G +S R +
Sbjct: 229 WQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL 288
Query: 390 YQANNSRLMNKDIKKNNSLE-TFIKEVAWRDFYKHAISYWPFLSMDLPFKFETLNIKWEN 448
+ + K +K+N++ + ++ WR+F+ A + P + + I W+
Sbjct: 289 WD------LYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDR-MEGNPICIQIPWDR 341
Query: 449 DVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAK-NLLIDWRWGERWFR 507
+ KW G+TG P +DAIM ++ + G+I++ +R A FL + +L + W G R F
Sbjct: 342 NPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFD 401
Query: 508 KHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEGKFIRHWL 559
+ L+D D + N G W + + + Q +F + + DP G +IR +L
Sbjct: 402 ELLLDADFSVNAGSWMWLSCSAF-FQQFFHCYCPVGFGRRTDPSGDYIRRYL 452
>Hs4758072 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 586
Score = 73.9 bits (180), Expect = 6e-13
Identities = 49/166 (29%), Positives = 82/166 (48%), Gaps = 12/166 (7%)
Query: 400 KDIKKNNSLE-TFIKEVAWRDFYKHAISYWPFLSMDLPFKFE----TLNIKWENDVFLFE 454
K +KKN+S + ++ WR+F+ A + P K E + I W+ +
Sbjct: 274 KKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFD-----KMEGNPICVQIPWDKNPEALA 328
Query: 455 KWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAK-NLLIDWRWGERWFRKHLIDY 513
KW G TG P +DAIM ++ + G+I++ +R A FL + +L I W G + F + L+D
Sbjct: 329 KWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDA 388
Query: 514 DTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEGKFIRHWL 559
D + N G W + + + Q +F + + DP G +IR +L
Sbjct: 389 DWSINAGSWMWLSCSSF-FQQFFHCYCPVGFGRRTDPNGDYIRRYL 433
>7300494 [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 542
Score = 61.2 bits (147), Expect = 4e-09
Identities = 39/140 (27%), Positives = 72/140 (50%), Gaps = 14/140 (10%)
Query: 442 LNIKWEN-DVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLAK-NLLIDW 499
L+I W + L + W G+TG P++D M ++L G++++ R A+FL + L W
Sbjct: 338 LSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSW 397
Query: 500 RWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKL------QSEKYDPEGK 553
G + F K+L+D D + G W + +S+ + R+ + L +++ DP+G
Sbjct: 398 EHGLQHFLKYLLDADWSVCAGNWMWVSSSAFE-----RLLDSSLVTCPVALAKRLDPDGT 452
Query: 554 FIRHWLENDEN-DSDNVHEP 572
+I+ ++ N + VHEP
Sbjct: 453 YIKQYVPELMNVPKEFVHEP 472
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,118,405
Number of Sequences: 60738
Number of extensions: 1562129
Number of successful extensions: 3972
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3945
Number of HSP's gapped (non-prelim): 18
length of query: 595
length of database: 30,389,216
effective HSP length: 112
effective length of query: 483
effective length of database: 23,586,560
effective search space: 11392308480
effective search space used: 11392308480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)