ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0351 good R KOG1674 General function prediction only Cyclin
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0351 112866 113900 345
(345 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL001w [R] KOG1674 Cyclin 248 1e-65
At2g44740 [R] KOG1674 Cyclin 89 9e-18
YIL050w [R] KOG1674 Cyclin 83 7e-16
SPBC20F10.10 [R] KOG1674 Cyclin 81 2e-15
At3g21870 [R] KOG1674 Cyclin 79 7e-15
At5g61650 [R] KOG1674 Cyclin 79 1e-14
At3g05330 [R] KOG1674 Cyclin 75 1e-13
At5g07450 [R] KOG1674 Cyclin 72 9e-13
At3g60550 [R] KOG1674 Cyclin 71 2e-12
At2g45080 [R] KOG1674 Cyclin 65 1e-10
At3g63120 [R] KOG1674 Cyclin 65 1e-10
YER059w [R] KOG1674 Cyclin 52 1e-06
>YOL001w [R] KOG1674 Cyclin
Length = 293
Score = 248 bits (632), Expect = 1e-65
Identities = 136/240 (56%), Positives = 170/240 (70%), Gaps = 19/240 (7%)
Query: 4 MNTIDPQKGSNI--GQIIP---LPEEYLRCSRTHLVVIISRMLSFLIQIND--ANNAGNQ 56
M + ++ NI Q IP LP ++ +CSRT LVV+ISRML LI IN+ A +
Sbjct: 1 MESTSGERSENIHEDQGIPKVILPADFNKCSRTDLVVLISRMLVSLIAINENSATKKSDD 60
Query: 57 TMELTRFHSKAAPSITVYQYLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFTLNSLTVH 116
+ LTR+HSK P+I+++ Y IRLTK+SSLEH VL++++YYIDLL VYP+FTLNSLT H
Sbjct: 61 QITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAH 120
Query: 117 RFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFLERVRYRIIPRDDNIENC 176
RFLLTATT+A+KGLCDSF TN HY+KVGGV+C ELNILEN+FL+RV YRIIPRD NI C
Sbjct: 121 RFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLC 180
Query: 177 KIEQK----------LGSNMLIPMKNASQRGPDNGFNVLQNYYRKIVQLVGNPLNSPDKT 226
IEQK LGS L ++ P +G+NVL YYR+IVQLVG+ SPDK+
Sbjct: 181 SIEQKQKKFVIDKNALGSLDLDSYSYVNR--PKSGYNVLDKYYRRIVQLVGSFNASPDKS 238
>At2g44740 [R] KOG1674 Cyclin
Length = 202
Score = 89.0 bits (219), Expect = 9e-18
Identities = 44/128 (34%), Positives = 72/128 (55%), Gaps = 1/128 (0%)
Query: 33 LVVIISRMLSFLIQIND-ANNAGNQTMELTRFHSKAAPSITVYQYLIRLTKYSSLEHSVL 91
L+ +S +L + + ND Q+ ++ FH + P+IT+ YL R+ KY++ S
Sbjct: 13 LIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSCF 72
Query: 92 LSAVYYIDLLSAVYPEFTLNSLTVHRFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSEL 151
+ A Y+D + P +NS VHR L+T+ +A+K L D + N +Y+KVGG+ E+
Sbjct: 73 VVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKEM 132
Query: 152 NILENEFL 159
N LE +FL
Sbjct: 133 NFLELDFL 140
>YIL050w [R] KOG1674 Cyclin
Length = 285
Score = 82.8 bits (203), Expect = 7e-16
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 33 LVVIISRMLSFLIQINDANNAGNQTME----------LTRFHSKAAPSITVYQYLIRLTK 82
L+++IS +L+ +I ND +Q + + F+ K P I V QYL R+ K
Sbjct: 110 LILMISALLNRIITANDETTDVSQQVSDETEDELLTPILAFYGKNVPEIAVVQYLERIQK 169
Query: 83 YSSLEHSVLLSAVYYIDLLSAVYPE-----------FTLNSLTVHRFLLTATTIASKGLC 131
Y + + LS + Y D +S Y F ++S +HR L+T TI +K L
Sbjct: 170 YCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFVMDSGNIHRLLITGVTICTKFLS 229
Query: 132 DSFCTNTHYSKVGGVQCSELNILENEFLERVRYRII 167
D F +N+ Y+KVGG+ ELN LE +FL ++++
Sbjct: 230 DFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLL 265
>SPBC20F10.10 [R] KOG1674 Cyclin
Length = 243
Score = 81.3 bits (199), Expect = 2e-15
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 23 EEYLRCS---RTHLVVIISRMLSFLIQINDANNAGNQTMELTR-----------FHSKAA 68
EE+L S + L+ +IS LS L ++ND+ ++ ++ F +K
Sbjct: 18 EEHLELSSFNQEKLLEMISVFLSRLTRLNDSKQEATESDQIPLSPTSLKNPCLIFSAKNV 77
Query: 69 PSITVYQYLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFT--LNSLTVHRFLLTATTIA 126
PSI++ YL R+ KY + V LS + Y+D + + FT +NS +HRFL+ T A
Sbjct: 78 PSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHF-HFTVFINSFNIHRFLIAGFTAA 136
Query: 127 SKGLCDSFCTNTHYSKVGGVQCSELNILENEF 158
SK D F TN+ Y+KVGG+ ELN LE F
Sbjct: 137 SKFFSDVFYTNSRYAKVGGIPLHELNHLELSF 168
>At3g21870 [R] KOG1674 Cyclin
Length = 210
Score = 79.3 bits (194), Expect = 7e-15
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 22 PEEYLRCSRTHLVVIISRMLSFLIQIND--ANNAGNQTMELTRFHSKAAPSITVYQYLIR 79
PE + ++ IIS ++ L+ N+ A L FH APSI++ +YL R
Sbjct: 16 PESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLER 75
Query: 80 LTKYSSLEHSVLLSAVYYIDLLSAVYPEFTLNSLTVHRFLLTATTIASKGLCDSFCTNTH 139
+ KY+ + + YID L+ +P + SL VHR L+T IA+K L D N
Sbjct: 76 IYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEF 135
Query: 140 YSKVGGVQCSELNILENEFLERVRYRI 166
Y++VGGV ++LN +E E L + +R+
Sbjct: 136 YARVGGVSNADLNKMELELLFLLDFRV 162
>At5g61650 [R] KOG1674 Cyclin
Length = 219
Score = 78.6 bits (192), Expect = 1e-14
Identities = 44/155 (28%), Positives = 87/155 (55%), Gaps = 5/155 (3%)
Query: 41 LSFLIQ-INDANNAGNQTMELTRFHSKAAPSITVYQYLIRLTKYSSLEHSVLLSAVYYID 99
+S+L+Q +++ N+ +Q + + F PSI++ YL R+ +Y++ +S + A Y+D
Sbjct: 29 MSYLLQRVSETNDNLSQKQKPSSFTGVTKPSISIRSYLERIFEYANCSYSCYIVAYIYLD 88
Query: 100 LLSAVYPEFTLNSLTVHRFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFL 159
P +NS VHR ++T+ +++K + D N +Y+KVGG+ E+N+LE +FL
Sbjct: 89 RFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGISREEMNMLELDFL 148
Query: 160 ERVRYRIIPRDDNIEN--CKIEQKLGSNMLIPMKN 192
+ + + N C +++++ ML+ MK+
Sbjct: 149 FGIGFELNVTVSTFNNYCCFLQREMA--MLMKMKS 181
>At3g05330 [R] KOG1674 Cyclin
Length = 588
Score = 75.5 bits (184), Expect = 1e-13
Identities = 47/129 (36%), Positives = 70/129 (53%), Gaps = 7/129 (5%)
Query: 59 ELTRFHSKAAPSITVYQYLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFT-----LNSL 113
E+T FH APS+++Y+Y R+ +Y+ ++A YI L PE T L SL
Sbjct: 437 EITMFHGSKAPSLSIYRYTERIHRYAQCSPVCFVAAFAYI-LRYLQRPEATSTARRLTSL 495
Query: 114 TVHRFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFLERVRYRIIPRDDNI 173
VHR L+T+ +A+K L N +Y+K+GGV E+N LE FL V +R+ +
Sbjct: 496 NVHRLLITSLLVAAKFLERQCYNNAYYAKIGGVSTEEMNRLERTFLVDVDFRLYITTETF 555
Query: 174 E-NCKIEQK 181
E +C + QK
Sbjct: 556 EKHCLMLQK 564
>At5g07450 [R] KOG1674 Cyclin
Length = 216
Score = 72.4 bits (176), Expect = 9e-13
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 36 IISRMLSFLIQINDANNAGNQTME----LTRFHSKAAPSITVYQYLIRLTKYSSLEHSVL 91
+I+ M S L ++++ N+ ++ ++ F++ PSI++ Y+ R+ KY+ S
Sbjct: 23 VITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSDSCY 82
Query: 92 LSAVYYIDLLSAVYPEFTLNSLTVHRFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSEL 151
+ A Y+D P ++S VHR ++T+ +++K + D N Y+KVGG+ E+
Sbjct: 83 IVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTEEM 142
Query: 152 NILENEFLERVRYRI 166
N+LE +FL + +++
Sbjct: 143 NLLELDFLFGIGFQL 157
>At3g60550 [R] KOG1674 Cyclin
Length = 230
Score = 71.2 bits (173), Expect = 2e-12
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 12/151 (7%)
Query: 25 YLRCSRTHLVV-IISRMLSFLIQIND--------ANNAGNQTMELTRFHSKAAPSITVYQ 75
Y S+T LV+ ++S ++ + N+ ++ AG +T F + P +T+
Sbjct: 23 YQNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQI---FDCREIPDMTIQS 79
Query: 76 YLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFTLNSLTVHRFLLTATTIASKGLCDSFC 135
YL R+ +Y+ SV + A YID P F ++ VHR L+T IASK + D
Sbjct: 80 YLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASKYVEDLNY 139
Query: 136 TNTHYSKVGGVQCSELNILENEFLERVRYRI 166
N++++KVGG++ +LN LE EFL + +++
Sbjct: 140 RNSYFAKVGGLETEDLNKLELEFLFLMGFKL 170
>At2g45080 [R] KOG1674 Cyclin
Length = 222
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 63 FHSKAAPSITVYQYLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFTLNSLTVHRFLLTA 122
F + P +T+ YL R+ +Y+ SV + A YID F ++ VHR L+T
Sbjct: 61 FDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITT 120
Query: 123 TTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFLERVRYRI 166
IASK + D N++++KVGG++ +LN LE EFL + +++
Sbjct: 121 IMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKL 164
>At3g63120 [R] KOG1674 Cyclin
Length = 221
Score = 65.1 bits (157), Expect = 1e-10
Identities = 44/138 (31%), Positives = 70/138 (49%), Gaps = 5/138 (3%)
Query: 60 LTRFHSKAAPSITVYQYLIRLTKYSSLEHSVLLSAVYYIDLLSAVYPEFTLNSLTVHRFL 119
+T F ++ P I++ YL R+ KYS S + A YID L L VHR +
Sbjct: 62 VTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHK-TRALLKPLNVHRLI 120
Query: 120 LTATTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFLERVRYR--IIPRDDNIENCK 177
+T +A+K D + N +Y++VGGV ELN LE E L + ++ + P+ + C+
Sbjct: 121 ITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQ 180
Query: 178 IEQKLGSNMLI--PMKNA 193
+E++ I P+K A
Sbjct: 181 LEKQNRDGFQIEWPIKEA 198
>YER059w [R] KOG1674 Cyclin
Length = 420
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/59 (40%), Positives = 39/59 (65%), Gaps = 1/59 (1%)
Query: 102 SAVYPE-FTLNSLTVHRFLLTATTIASKGLCDSFCTNTHYSKVGGVQCSELNILENEFL 159
S +P+ F ++S +HR ++ T+++K L D F +N+ YS+VGG+ ELN LE +FL
Sbjct: 323 SRAHPQMFVMDSHNIHRLIIAGITVSTKFLSDFFYSNSRYSRVGGISLQELNHLELQFL 381
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,089,382
Number of Sequences: 60738
Number of extensions: 919978
Number of successful extensions: 2644
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2626
Number of HSP's gapped (non-prelim): 13
length of query: 345
length of database: 30,389,216
effective HSP length: 107
effective length of query: 238
effective length of database: 23,890,250
effective search space: 5685879500
effective search space used: 5685879500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)