ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0361 good J KOG2206 Translation, ribosomal structure and biogenesis Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0361 114713 116944 744
(744 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR001w [J] KOG2206 Exosome 3'-5' exoribonuclease complex subuni... 680 0.0
7299933 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subuni... 269 1e-71
Hs4505917 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subu... 265 2e-70
CE02145 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subuni... 239 1e-62
At5g35910 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subu... 205 2e-52
At1g54440 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subu... 202 2e-51
At2g32420 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subu... 164 6e-40
At5g24340 [L] KOG2207 Predicted 3'-5' exonuclease 57 8e-08
7303061 [Z] KOG0241 Kinesin-like protein 52 4e-06
>YOR001w [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 733
Score = 680 bits (1754), Expect = 0.0
Identities = 357/753 (47%), Positives = 483/753 (63%), Gaps = 29/753 (3%)
Query: 1 MSSEDKDTLLSSLVQTVRSSSALAAQDIDFYKSLDSNINASLEDTXXXXXXXXXXXXXXX 60
M+SE+ D LLS ++ VR++S+LA+QD+DFYK+LD + L+
Sbjct: 1 MTSENPDVLLSRVINVVRAASSLASQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSI 60
Query: 61 XXXXXVIQQGKDSFVDSWKSISNIMDNLFEKSDHALDNIRXXXXXXXXXPSLKYLNDDDR 120
+ ++ D W + NIMDNL E SDH+LD + L+YL +
Sbjct: 61 DEHHESFELKEEDISDLWNNFGNIMDNLLEMSDHSLDKLNCAINSKSRGSDLQYLGEFSG 120
Query: 121 SNNKPSKRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEESIPSHYP 180
N P+KR+EKPQL FK+P+DN+E HPF PLL+ KP++L+P SL++V ++E+ PSHYP
Sbjct: 121 KNFSPTKRVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYP 180
Query: 181 HPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLE 240
HPYEYEIDHQ+Y+ IL E IPSK WD++ IWVDT L M ++L E+A+DLE
Sbjct: 181 HPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLE 240
Query: 241 HHDYRSYYGIVCLMQISDREHDWIVDTIALREELYILNDIFTDPNVTKVLHGAFMDIIWL 300
HHDYRSYYGIVCLMQIS RE D++VDT+ LRE L+ILN++FT+P++ KV HGAFMDIIWL
Sbjct: 241 HHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWL 300
Query: 301 QRDLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLA 360
QRDLGLY+VGLFDTYHAS+ +G P+HSLAYLLE FANFKTSKKYQLADWRIRPL+KPM A
Sbjct: 301 QRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTA 360
Query: 361 YARADTHFLLNIFDKLRNSLLEQNKMSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPIE 420
YARADTHFLLNI+D+LRN L+E NK++ VL+ESR VAKRRFEYS +RP PSS V+SPIE
Sbjct: 361 YARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIE 420
Query: 421 KDEPWKNIMFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPTEP 480
K+ PWK +M+QYNIP +E+L+R LY+WRD IARRDDESPR+VMPNQLL +LVA PT+
Sbjct: 421 KESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDV 480
Query: 481 INVLSVSSYVSEHLRTNSKVIANLIKRTLEDLKGNSNSSAIPLLESAESNGTDLANIITT 540
I V+S+++ V+EH+R N+K++ANLI+ L ++K N+N A P+ S L I+
Sbjct: 481 IGVVSLTNGVTEHVRQNAKLLANLIRDALRNIK-NTNEEATPIPSSETKADGILLETISV 539
Query: 541 SQIKSIQNIFHSLASEINSQKLNNEQNSEKSVLFNGISNLDVNTAVRYTPKTRTLIPQHE 600
QI+ + F L + N K + + S+L I P+ +H+
Sbjct: 540 PQIRDVMERFSVLCNS-NISKSRAKPVTNSSILLGKI-----------LPR-----EEHD 582
Query: 601 LLKRQHEITRTLEQEYTDRQAQSI--VLPSNED-----EAP--TQVSNDENRNEVITSDP 651
+ + + ++ E +AQ+ L + ED E P V +E + S P
Sbjct: 583 IAYSKDGLPNKVKTEDIRIRAQNFKSALANLEDIIFEIEKPLVVPVKLEEIKTVDPASAP 642
Query: 652 SQEEIEENKDEVITLRKRQSQSNNKRKTISPPASHEIMDYAAGSDLLNSTKNNTNSQKHK 711
+ +N D+++ L+K+ Q K + +DY+ ++L S K N+++ K
Sbjct: 643 NHSPEIDNLDDLVVLKKKNIQKKQPAKE-KGVTEKDAVDYSKIPNIL-SNKPGQNNRQQK 700
Query: 712 KRRFDPYSVEHVGPQPIXXXXXXXXXXNVSFKR 744
KRRFDP S + GP+ N+SFKR
Sbjct: 701 KRRFDPSSSDSNGPRAAKKRRPAAKGKNLSFKR 733
>7299933 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 900
Score = 269 bits (688), Expect = 1e-71
Identities = 149/410 (36%), Positives = 235/410 (56%), Gaps = 28/410 (6%)
Query: 126 SKRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEESIPS--HYPHPY 183
+K I +PQ F+ PVDN+ +PF P L+ KP+SL+P L ++PE + + Y HPY
Sbjct: 186 AKNIVRPQTQFREPVDNSAQNPFVPRLKEKPNSLKP----LALLPEYDDAGNVQSYLHPY 241
Query: 184 EYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLEHHD 243
E+E+ + + +P+ ETE + VDTVE L + +EL +A ++AID+EHH
Sbjct: 242 EFELLKFQPPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHS 301
Query: 244 YRSYYGIVCLMQISDREHDWIVDTIALREELYILNDIFTDPNVTKVLHGAFMDIIWLQRD 303
YR++ GI CL+Q+S R D+I DT+ LR++++ILN + TDP K+LHGA +DI WLQRD
Sbjct: 302 YRTFMGITCLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRD 361
Query: 304 LGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYAR 363
L LYIV +FDT+ A++ L + SLAYLL+ + + K QLADWR+RPL + ++ YAR
Sbjct: 362 LSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYAR 421
Query: 364 ADTHFLLNIFDKLRNSLLEQNK----MSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPI 419
DTHFL+ ++ ++ N LL+Q+ + V +S V K+R+ +P + + +
Sbjct: 422 QDTHFLIYVYGRMTNDLLQQHAEPGLLGSVYQQSTDVCKKRYN----KPHIGPESHLDLV 477
Query: 420 EKDEPWKNIMFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPTE 479
K + + + LR ++EWRD AR +DES YV+PN +++ + P E
Sbjct: 478 RKT--------KRSFDNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPRE 529
Query: 480 PINVLSVSSYVSEHLRTNSKVIANLIKRTLEDLKGNSNSSAIPLLESAES 529
+L+ + + +R + ++ LK P+LE+ S
Sbjct: 530 MQGILACCNPIPPLVRQQLHTLHQIV------LKARDQPLVKPILEAHSS 573
>Hs4505917 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 860
Score = 265 bits (677), Expect = 2e-70
Identities = 152/438 (34%), Positives = 241/438 (54%), Gaps = 57/438 (13%)
Query: 126 SKRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMV--------PEEESIP- 176
+K I +PQL F+ +DN+ PF P + KP++ +P +L PE+ +P
Sbjct: 177 AKNIIRPQLKFREKIDNSNT-PFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPP 235
Query: 177 ----------------SHYPHPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVE 220
+ HPY+YE++H D++L +P + +ET ++ +++
Sbjct: 236 ALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLD 295
Query: 221 GLNKMKDELSKATELAIDLEHHDYRSYYGIVCLMQISDREHDWIVDTIALREELYILNDI 280
L ++ ++L E A+DLEHH YRS+ G+ CLMQIS R D+I+DT+ LR ++YILN+
Sbjct: 296 ELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNES 355
Query: 281 FTDPNVTKVLHGAFMDIIWLQRDLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKT 340
TDP + KV HGA DI WLQ+D GLY+V +FDT+ A+R+L +HSL +LL+ + N +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDS 415
Query: 341 SKKYQLADWRIRPLTKPMLAYARADTHFLLNIFDKLRNSLLEQN-----KMSDVLHESRK 395
+K+YQLADWRIRPL + ML+YAR DTH+LL I+DK+R + E+ ++ V SR
Sbjct: 416 NKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRD 475
Query: 396 VAKRRFEYSSFRPKVPSSAVFSPIEKDEPWKNIMFQYNIPASKELL--LRRLYEWRDTIA 453
+ ++F PI DE + + + + + L + L+ WRD A
Sbjct: 476 ICLKKF--------------IKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTA 521
Query: 454 RRDDESPRYVMPNQLLVSLVAGAPTEPINVLSVSSYVSEHLRTNSKVIANLIKRTLEDLK 513
RR+DES YV+PN +++ + P EP +++ + V +R + LI++ E
Sbjct: 522 RREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQARE--- 578
Query: 514 GNSNSSAIPLLESAESNG 531
+PLL+S + G
Sbjct: 579 -------MPLLKSEVAAG 589
>CE02145 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 876
Score = 239 bits (610), Expect = 1e-62
Identities = 134/360 (37%), Positives = 202/360 (55%), Gaps = 22/360 (6%)
Query: 129 IEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEES---------IPSHY 179
+EKPQ ++ DN++ PF L K H+++ + + ++ES +
Sbjct: 187 LEKPQKTYNISSDNSQA-PFSSKLTVKHHAIEK-RTGIVLHDDDESGRRDWISAETETEE 244
Query: 180 PHPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDL 239
HPY EI H K ++ L + E + +T +DT E L + L+ E A+DL
Sbjct: 245 EHPYIAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAVDL 304
Query: 240 EHHDYRSYYGIVCLMQISDREHDWIVDTIALREELYILNDIFTDPNVTKVLHGAFMDIIW 299
EHH RSY G+ CL+QIS R+ D+I+D + + + +LN+ F +P + KV HG+ D++W
Sbjct: 305 EHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDSDVLW 364
Query: 300 LQRDLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPML 359
LQRD G+++V LFDTY A + L +PK SLAYL RFA+ K+YQLADWR RPL M+
Sbjct: 365 LQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMI 424
Query: 360 AYARADTHFLLNIFDKLRNSLLEQNKMSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPI 419
YAR DTH+LL +D LR LL+Q +++ +A E S KV VF+P
Sbjct: 425 NYAREDTHYLLYSYDMLREQLLKQ--------DTKDLANVYSESSDLCIKVYKKPVFNP- 475
Query: 420 EKDEPWKNIMFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPTE 479
I F++ + ++ L L++WRD +AR +DESP +V+PN +++SL P +
Sbjct: 476 --KGYLTEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRD 533
>At5g35910 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 838
Score = 205 bits (521), Expect = 2e-52
Identities = 172/592 (29%), Positives = 270/592 (45%), Gaps = 59/592 (9%)
Query: 11 SSLVQTVRSSSAL--AAQDIDFYKSLDSNINASLEDTXXXXXXXXXXXXXXXXXXXXVIQ 68
SS + + SSS L ++D FY + D E T +
Sbjct: 30 SSTLSRLSSSSRLIPTSRDFHFYYNFDEFKRPIDEITGTSQSTLATIGDSEQVWGKSMKF 89
Query: 69 QGK--DSFVDSWKSISNIMDNLFEKSDHALDNIRXXXXXXXXXP--------SLKYLNDD 118
G D + + W + N+ D L E+ D ++D + +K D
Sbjct: 90 PGDVDDVYAEDW--LCNVNDELIERFDVSVDEFQRIRKKEKEIAVNGGGSVIDVKMAERD 147
Query: 119 DRSNNKPS-----KRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEE 173
S+ K I+KPQ + V+N L PF+ + L+ E L+ +
Sbjct: 148 KNSSGKAKVPFHVPTIKKPQEEYNILVNNANL-PFEHVW------LERSEDDLRAM---- 196
Query: 174 SIPSHYPHPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKAT 233
HP E + + D + EP+ ++T +V V+ L ++ +L
Sbjct: 197 -------HPLE-KFSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVE 248
Query: 234 ELAIDLEHHDYRSYYGIVCLMQISDREHDWIVDTIALREELY-ILNDIFTDPNVTKVLHG 292
E A+DLEH+ YRS+ G+ CLMQIS R D+IVDT LR + L +IF DP KV+HG
Sbjct: 249 EFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHG 308
Query: 293 AFMDIIWLQRDLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIR 352
A DIIWLQRD G+Y+ LFDT ASR+L ++SL +LL+ F +K+YQ ADWRIR
Sbjct: 309 ADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIR 368
Query: 353 PLTKPMLAYARADTHFLLNIFDKLRNSLLEQNKMSDVLHESR---KVAKRRFEYSSFRPK 409
PL + M YAR DTH+LL I+D ++ L Q D H +V KR ++
Sbjct: 369 PLPEEMTRYAREDTHYLLYIYDLIKLEL--QRMAKDDAHTDSPLLEVYKRSYD------- 419
Query: 410 VPSSAVFSPIEKDEPWKNI--MFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQ 467
V + + + + ++ + A++ ++ L EWRD IAR +DES YV+PN+
Sbjct: 420 VCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFIARAEDESTGYVLPNK 479
Query: 468 LLVSLVAGAPTEPINVLSVSSYVSEHLRTNSKVIANLIKRTLEDLKGNSNSSAIPLLESA 527
+L+ + P + + ++ N + ++I+++++ S+A+ L + +
Sbjct: 480 VLLEIAKEMPDSVGKLRRMLKSKHPYIERNVDSVVSVIRQSMQHYAA-FESAALSLKDVS 538
Query: 528 ESNGTDLANIITTSQIKSIQNIFHSLASEINSQKLNNEQNSEKSVLFNGISN 579
N D NI S+ K + H+ S K N+ Q L G +N
Sbjct: 539 PGNVMD-KNIEPISEKKDL----HTGDVASPSLKENSSQLESTRDLIMGAAN 585
>At1g54440 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 738
Score = 202 bits (514), Expect = 2e-51
Identities = 133/384 (34%), Positives = 195/384 (50%), Gaps = 36/384 (9%)
Query: 129 IEKPQLSFKTPVDNTELHPFKPLLEYKPHSLQPFEISLKMVPEEESIPSHYPHPYEYEID 188
+ KPQ +K VDN +PF+ +L L+ E L+ + HP E E+
Sbjct: 163 LTKPQEEYKILVDNAN-NPFEHVL------LEKSEDGLRFI-----------HPLE-ELS 203
Query: 189 HQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLEHHDYRSYY 248
+ D L P+ +ET V+ V+ L + L E A+DLEH+ YR++
Sbjct: 204 VMDFVDRNLSEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQ 263
Query: 249 GIVCLMQISDREHDWIVDTIALREELY-ILNDIFTDPNVTKVLHGAFMDIIWLQRDLGLY 307
G+ CLMQIS R D+IVD L + + L ++F DP KV+HGA DIIWLQRD G+Y
Sbjct: 264 GLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIY 323
Query: 308 IVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYARADTH 367
+ LFDT ASR+L ++SL +LL+ + +K+YQ ADWRIRPL M YAR DTH
Sbjct: 324 VCNLFDTGQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTH 383
Query: 368 FLLNIFDKLRNSLLEQNKMSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPIEKDEPWKN 427
+LL I+D +R L K D + + SF + +F+
Sbjct: 384 YLLYIYDVMRMELHTMAK-EDECTSAVMTCACNYMKKSFGLGI---HIFT---------- 429
Query: 428 IMFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPTEPINVLSVS 487
F N+ A + +L+ L EWRD IAR DDES YV+PN+ L + P + +
Sbjct: 430 --FMGNLNAVQLSILQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLL 487
Query: 488 SYVSEHLRTNSKVIANLIKRTLED 511
+L N + ++I+R++++
Sbjct: 488 KSKLPYLERNFDAVISVIRRSMQN 511
>At2g32420 [J] KOG2206 Exosome 3'-5' exoribonuclease complex subunit
PM/SCL-100 (Rrp6)
Length = 237
Score = 164 bits (414), Expect = 6e-40
Identities = 87/200 (43%), Positives = 114/200 (56%)
Query: 181 HPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTVEGLNKMKDELSKATELAIDLE 240
HPYE EI N I +WV+T L ++ + L+K A+D E
Sbjct: 23 HPYETEITVLLENPQIEFGFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTE 82
Query: 241 HHDYRSYYGIVCLMQISDREHDWIVDTIALREELYILNDIFTDPNVTKVLHGAFMDIIWL 300
H RS+ G L+QIS E D++VDTIAL + + IL +F+DPN+ KV HGA D+IWL
Sbjct: 83 QHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWL 142
Query: 301 QRDLGLYIVGLFDTYHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLA 360
QRD +Y+V +FDT A +L P+ SLAYLLE T+K Q DWR RPL++ M+
Sbjct: 143 QRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVR 202
Query: 361 YARADTHFLLNIFDKLRNSL 380
YAR D H+LL I D L L
Sbjct: 203 YARTDAHYLLYIADSLTTEL 222
>At5g24340 [L] KOG2207 Predicted 3'-5' exonuclease
Length = 505
Score = 57.4 bits (137), Expect = 8e-08
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 225 MKDELSKATELAIDLE---HHDYRSYYGIVCLMQIS-------DREHDWIVD--TIALRE 272
+K +++T +A+D E H S + V L+Q++ D +++D +I L
Sbjct: 21 LKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIHLPS 80
Query: 273 ELYILNDIFTDPNVTKVLHGAFMDIIWLQRDLG--------------LYIVGLFDTYHAS 318
+LND+F P+V K+ D+++L L I +++
Sbjct: 81 VWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHK 140
Query: 319 RM-LGFPKH--SLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYARADTHFLLNIFDK 375
R PK SLA + + + SK+ Q +DW RPLT+ YA D H LL IFD
Sbjct: 141 RFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDV 200
Query: 376 LRNSLLEQNKMSDV 389
L+E + D+
Sbjct: 201 FEAHLVEGITVQDL 214
>7303061 [Z] KOG0241 Kinesin-like protein
Length = 1921
Score = 51.6 bits (122), Expect = 4e-06
Identities = 60/268 (22%), Positives = 108/268 (39%), Gaps = 35/268 (13%)
Query: 479 EPINVLSVSSYVSEH---------LRTNSKVIANLIKRTLEDLKGNSNSSAIPLLESAES 529
EP + S S Y +E+ + T S++ A+ + D+ +SN S + SA +
Sbjct: 1486 EPEDSYSDSEYAAEYEQERQQNKSMATRSRLTASKTMDSFMDVSSHSNQSYLSYTSSANA 1545
Query: 530 NGTDLANIITTSQIKSIQNIFHSLASEINSQKLNNEQNSEKSVLFNGISNLD-------- 581
N L + T S S + + S A N+ N + S +S+ + + D
Sbjct: 1546 NMKHLTGLATLSMSSSTSSGYGSQAVSCNNLS-NEDIASMRSMSIDETPDFDRVNSNSPP 1604
Query: 582 -----VNTAVRYTPKTRTLI-PQHELLKRQHEITRTLEQEYTDRQAQSIVLPSNEDEAPT 635
VN ++ PK + P+ + K Q T LEQ + + AQS +D+
Sbjct: 1605 NRQARVNPFLKDMPKAKIQEQPEQQAKKLQEAFTHPLEQLESSQNAQS------DDDECA 1658
Query: 636 QVSNDENRNEVITSDP----SQEEIEENKDEVITLRKRQSQSNNKRKTISPPASHEIMDY 691
Q+ + N N + ++P SQ ++EE+ + + + + + N ++ S SH D
Sbjct: 1659 QLPKNNNNNLDLVNEPKPLSSQTDLEESMSQPKSKTEFATDNQNGNRS-SDELSHSSEDL 1717
Query: 692 AAGSDLLNSTKNNTNSQKHKKRRFDPYS 719
G ++ + KK P S
Sbjct: 1718 LEGDGIVREELPAGKVVRRKKSNTQPPS 1745
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,098,303
Number of Sequences: 60738
Number of extensions: 1913932
Number of successful extensions: 6046
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6027
Number of HSP's gapped (non-prelim): 11
length of query: 744
length of database: 30,389,216
effective HSP length: 114
effective length of query: 630
effective length of database: 23,465,084
effective search space: 14783002920
effective search space used: 14783002920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)