ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0375 good A KOG2634 RNA processing and modification Initiator tRNA phosphoribosyl-transferase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0375 118965 120431 489
(489 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR283c [A] KOG2634 Initiator tRNA phosphoribosyl-transferase 466 e-131
SPAC3F10.06c [A] KOG2634 Initiator tRNA phosphoribosyl-transferase 206 5e-53
At2g40570 [A] KOG2634 Initiator tRNA phosphoribosyl-transferase 153 6e-37
>YMR283c [A] KOG2634 Initiator tRNA phosphoribosyl-transferase
Length = 513
Score = 466 bits (1200), Expect = e-131
Identities = 251/502 (50%), Positives = 331/502 (65%), Gaps = 21/502 (4%)
Query: 1 MDKETLREIKEISKELRKEDKSLKNRLQSIIFDNNFLKEQVFPTF-QYPVVPNERCGLWY 59
MD+ + +I+K++RKE+KS++NRLQSI+ DN FL+++V P F YP++PNERCGLWY
Sbjct: 20 MDENIYLSLSQINKDIRKENKSVRNRLQSILLDNKFLQDRVIPIFPHYPLIPNERCGLWY 79
Query: 60 CDPKIYDTTSYFKSTDGHMNQWDFSTRRLNFHLLPLLGENGGLVILDSTRRGKKIPDALS 119
C+P + TSYFKSTDGH+NQWDFSTRRLNFHLL + +N G++I+DSTRRGKKIPDALS
Sbjct: 80 CNPSSFKQTSYFKSTDGHVNQWDFSTRRLNFHLLETIRDNKGIIIVDSTRRGKKIPDALS 139
Query: 120 KTVPIWCAVLNYLMLEADGKQWPFEEEILFVPPSTVPESEFDRMFAKLPELVQXXXXXXX 179
KTVPIWCAVLN LML+ K +++L++PP TVP+SE+D + K+PELV
Sbjct: 140 KTVPIWCAVLNTLMLQETEKNVAI-DKVLYLPPETVPKSEYDMIKRKIPELVAKLQKLNI 198
Query: 180 XXXXXXXXSLQIEEGHDKLLRPIWVYPGSSLLQLKHDLFSGEVIENTHWEPP--SNIIPV 237
E KLLRPIWV+PGSSLL D F+GEV E WE P NIIP+
Sbjct: 199 IDSKKLN-----ELFMGKLLRPIWVHPGSSLLDHSVDYFTGEVQEYEAWETPEDQNIIPI 253
Query: 238 ILCTVSYQCQDGTDKRYGFTYVQGAADDHELWAENLTPQLFWENIDELGDISKSDAELKD 297
ILCTVSYQ QDG DKRYGFTYVQGAADDHELW+ L +FW +I+ LGD S SD +L D
Sbjct: 254 ILCTVSYQAQDGMDKRYGFTYVQGAADDHELWSFGLDSNMFWAHIEYLGDASYSDDQLHD 313
Query: 298 SYNAVILRAKVQNSLDI--SGDISKML-EIDTITARLHLGKITSQFRITPKTVKYLNQKY 354
Y + AK++N I G + ++ ID IT + LGK++S I + L +Y
Sbjct: 314 -YIMDLAAAKLRNQCYIQDKGSLDEVFGNIDKITNEISLGKVSSGLTINKNLKQKLKSEY 372
Query: 355 SAVVLCHEAISVTEITELPRS------IHIFPLPSGSKKSSRELRSHLIKINALIEEQLS 408
V++ +++V E T+ I I+ L SG KKSS+ LRS +I+ I+ +
Sbjct: 373 GKVIIFSNSVTVAEDTDDEEESGTDPFISIYKLQSGDKKSSKALRSTFPRIHGEIQSLFT 432
Query: 409 RPDTAANLPILIACDSGKDISVSILLVALCKYYNLDWELQPQ-DSVNKTIIKKHLAKIIE 467
D P+LI C++G D+S+ ++L LC Y +W L + ++K I++KHL K+I
Sbjct: 433 NRDEKIK-PMLICCNTGTDMSIGVILSILCTKYTEEWMLTSELPDISKLIVRKHLTKLIS 491
Query: 468 SLQGRNVNPSRASLNSVNSFLM 489
L+GRNVNPSRA+LNSVNSFLM
Sbjct: 492 HLKGRNVNPSRATLNSVNSFLM 513
>SPAC3F10.06c [A] KOG2634 Initiator tRNA phosphoribosyl-transferase
Length = 453
Score = 206 bits (525), Expect = 5e-53
Identities = 154/486 (31%), Positives = 229/486 (46%), Gaps = 61/486 (12%)
Query: 14 KELRKEDKSLKNRLQSIIFDNNFLKEQV--FPTFQYPVVPNERCGLWYCDPKIYDTTSYF 71
+++ + + KNRL SI D F+ + +PTF+ PVV NERCG WY + + + YF
Sbjct: 11 QQIHVQARHPKNRLLSIAHDAKFVDSVIASYPTFK-PVV-NERCGTWYVNRRHAPISVYF 68
Query: 72 KSTDGHMNQWDFSTRRLNFHLLPLLGENGGLVILDSTRRGKKIPDALSKTVPIWCAVLNY 131
KSTDGH QW FS RRLN HLL + GL+I+DSTRRGK++PDALSKT+PIW A LN
Sbjct: 69 KSTDGHTGQWSFSCRRLNLHLLNEITTCDGLIIVDSTRRGKRMPDALSKTIPIWIATLNK 128
Query: 132 LMLEADGKQWPFEEEILFVPPSTVPESEFDRMFAKLPELVQXXXXXXXXXXXXXXXSLQI 191
+ E + F+PP +P++E + +L V
Sbjct: 129 CVFERLRPHSFPNARLAFLPP-FLPDTEKSSILQRLDGFVDSLMQSGIDLDALAAKL--- 184
Query: 192 EEGHDKLLRPIWVYPGSSLLQLKHDLFSGEVIENTHWEPPSNIIPVILCTVSYQCQDGTD 251
K +RP+WV P S L + + + V+L T S Q Q+G
Sbjct: 185 ----TKPIRPLWVTPASRLTSAQFEEY----------------FTVVLVTASAQVQNGYS 224
Query: 252 KRYGFTYVQGAADDHELWAENLTPQLFWENIDELGDISKSDAELKDSYNAVILRAKVQNS 311
+ +GF YVQGAADD E W+ LTP++FW+N + + + E K S +L + +NS
Sbjct: 225 REHGFLYVQGAADDEEEWSHGLTPEVFWQNTESILTCPEEQLEQKIS----LLLSSTRNS 280
Query: 312 LDISGDISKMLEIDTITARLHLGKITSQFRITPKTVKYLNQKYSAVVLCHEAISVTEITE 371
+S L + + +G +T F P+ Y ++++ T
Sbjct: 281 PTMSNSSLTHL----LPTPIFVGDVTG-FYPPPENTSYF------------VLNLSNTTL 323
Query: 372 LPRSIHIFPLPSGSKKSSRELRSHLIKINALIEEQLSRPDTAANLPILIACDSGKDISVS 431
++ FP+PSG KK + R H I + L P + ++ + K+ +
Sbjct: 324 NVKNELCFPIPSG-KKGAPVFRKHFPSILQEL-NSLDPPFYERDAIFIVDEGNAKEAASC 381
Query: 432 ILLVALCKYYNLDWEL--------QPQDSVNKTIIKKHLAKIIESLQGRNVNPSRASLNS 483
+ L+ LC YY+L L Q + K +++ L KI E NPSRA L +
Sbjct: 382 LALMILCLYYDLHMHLLAHPISLSASQSHLTKQTVRQFLVKITE--LHSKTNPSRAFLLA 439
Query: 484 VNSFLM 489
VNS L+
Sbjct: 440 VNSLLL 445
>At2g40570 [A] KOG2634 Initiator tRNA phosphoribosyl-transferase
Length = 505
Score = 153 bits (386), Expect = 6e-37
Identities = 99/298 (33%), Positives = 143/298 (47%), Gaps = 30/298 (10%)
Query: 5 TLREIKEISKELRKEDKSLKNRLQSIIFDNNFLKEQVFPTFQYPVVPNERCGLWYCDPKI 64
T I ++ +++ D SL N L+SI D+ F+ E + P+V N RCGLWY +
Sbjct: 12 TRDSIYRAARNIKRRDNSLYNALRSIYQDSIFVHEISLLWPKLPLVANLRCGLWYSEK-- 69
Query: 65 YDTTSYFKSTDGHMNQWDFSTRRLNFHLLPLLGENGGLVILDSTRRGKKIPDALSKTVPI 124
+D T YFKSTDGH N F+T RLN HL L GE GG +I+DSTR+GK+ PD++SKT+P+
Sbjct: 70 FDATCYFKSTDGHTNNLSFNTSRLNLHLPLLAGEKGGCIIIDSTRKGKRFPDSMSKTIPM 129
Query: 125 WCAVLNYLMLEADGKQWPFEEEILFVPPSTVPESEFDRMFAK------LPELVQXXXXXX 178
W V+N + + + S ++ K LP V
Sbjct: 130 WSCVVNRSIFNHWNRLCNIDAVSYNGLTSDDDGDNIRKLLDKWDCSLHLPLWVSNTERAS 189
Query: 179 XXXXXXXXXSLQIEEGHD---------KLLRPIWVYPGSSLLQLKHDLFSGEVIENTHWE 229
E G D K LRP+WV K ++ EV E+ W+
Sbjct: 190 IEARLDEWTRELDESGADIASLASCLRKPLRPLWV-------SQKTVIWLNEVPEHDSWD 242
Query: 230 PPSNIIPVIL--CTVSYQCQDGTDKRYGFTYVQGAADDHELWAENLTPQLFWENIDEL 285
P+IL + S + Q+ T + + Y+ GA DD E WA L+P +FW ++D+L
Sbjct: 243 ----FTPLILVSASASGELQNRTSSEFSWNYIPGAGDDEESWARGLSPNVFWTHVDDL 296
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,567,074
Number of Sequences: 60738
Number of extensions: 1278614
Number of successful extensions: 3314
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3298
Number of HSP's gapped (non-prelim): 4
length of query: 489
length of database: 30,389,216
effective HSP length: 110
effective length of query: 379
effective length of database: 23,708,036
effective search space: 8985345644
effective search space used: 8985345644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)