ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0449 good K KOG0323 Transcription TFIIF-interacting CTD phosphatases, including NLI-interacting factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0449 143618 141462 -719
(719 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR277w [K] KOG0323 TFIIF-interacting CTD phosphatases including... 644 0.0
SPAC19B12.05c [K] KOG0323 TFIIF-interacting CTD phosphatases inc... 396 e-110
ECU07g0890 [K] KOG0323 TFIIF-interacting CTD phosphatases includ... 178 2e-44
7291810 [K] KOG0323 TFIIF-interacting CTD phosphatases including... 162 1e-39
CE28931 [K] KOG0323 TFIIF-interacting CTD phosphatases including... 148 2e-35
Hs16554589 [K] KOG0323 TFIIF-interacting CTD phosphatases includ... 139 2e-32
Hs16554587 [K] KOG0323 TFIIF-interacting CTD phosphatases includ... 139 2e-32
At5g58000_2 [K] KOG0323 TFIIF-interacting CTD phosphatases inclu... 105 2e-22
At3g17550 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 100 1e-20
At3g19600 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 94 1e-18
At2g04930 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 93 2e-18
At1g20320 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 92 2e-18
At5g54210 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 85 4e-16
At5g23470 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 82 4e-15
At1g43600 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 78 5e-14
At2g02290 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 77 9e-14
At1g43610 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 77 9e-14
At2g33540 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 77 1e-13
At3g15330 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 76 2e-13
>YMR277w [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 732
Score = 644 bits (1661), Expect = 0.0
Identities = 324/607 (53%), Positives = 419/607 (68%), Gaps = 41/607 (6%)
Query: 3 LETNVKVTSDLPYPITVAQLYVKPGDHVEKGQRLFAYEYWDFQDVLVKYEEKT------- 55
+ T ++ LPYPI + +L G ++ +G RL Y++W LV+ T
Sbjct: 1 MTTQIRSPQGLPYPIQIDKLIPSVGSYLHEGDRLLVYKFW----YLVERASDTGDDDNEH 56
Query: 56 ----------------KKQRVDRVATFDSPVSGTVKEWHCSVKDEFASANHEVITIRQDC 99
KQ + + F+SP G + W+ V DE A+AN + I++ C
Sbjct: 57 DVSPGGSAGSNGVSPPTKQLRESIEFFESPYEGDLISWNVDVGDEVATANQVICEIKRPC 116
Query: 100 NHDITYGGLCVQCGNTVDEEDNSKNLTISHV-NTNIKVSEQQAETLERSSLTRLREEKKL 158
NHDI YGGLC QCG V D + + V + ++++SE +A ++ LR +KKL
Sbjct: 117 NHDIVYGGLCTQCGKEVSA-DAFDGVPLDVVGDVDLQISETEAIRTGKALKEHLRRDKKL 175
Query: 159 VLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPK---- 214
+LVVDLDQT+IHCGVDPTI EW DP NPN++ L+DVKSFTL++E ++P Y
Sbjct: 176 ILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMNDDGSML 235
Query: 215 --PPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRI 272
PP RK WYYVK+RPGLKEFF V+P FEMHIYTMATR+YA +IAKI+DPTGELFGDRI
Sbjct: 236 RPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRI 295
Query: 273 LSRDENGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFENLIKVVPYSFFVGIGDINSNF 332
LSRDENGSLTTKSL +LFP DQSMVVVIDDRGDVWNW NLIKVVPY+FFVG+GDINSNF
Sbjct: 296 LSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWNWCPNLIKVVPYNFFVGVGDINSNF 355
Query: 333 LPRQQNSVLHLGRHHRRK-QEEEKLISDIIDNEKKLKEKIDEEVKRQEEIISHIGDDNTR 391
LP+Q +L LGR R+K QE ++L++DI+DNEKKL+EKID+EVKRQEE ++H
Sbjct: 356 LPKQSTGMLQLGRKTRQKSQESQELLTDIMDNEKKLQEKIDKEVKRQEEKLNH---QLAT 412
Query: 392 KEGGPPN--KEDISKKLEHSASLEVQQQNRPLAELQKHLHNQTLLIDDDDELPHLSQILL 449
E P N KE+++KKLE+SASLEVQQQNRPLA+LQKHLH+Q LL+DDDDEL +L L
Sbjct: 413 AEEPPANESKEELTKKLEYSASLEVQQQNRPLAKLQKHLHDQKLLVDDDDELYYLMGTLS 472
Query: 450 RVHKEYFNQYTEAPKNPPDIKYLLPQMKYKVFQGCHFVFSGLIPLETDVRKADIVLWTDM 509
+HK Y++ ++ + P++ ++P +K KVFQ C+FVFSGLIPL TD++++DIV+WT
Sbjct: 473 NIHKTYYDMLSQQNEPEPNLMEIIPSLKQKVFQNCYFVFSGLIPLGTDIQRSDIVIWTST 532
Query: 510 FGATTSSDINYKXXXXXXXXXXXFKARLAKSFNPDIKIVHPDWLFECLVQWERVKESPYE 569
FGAT++ DI+Y +KARLAK FNP IKIVHPDW+FECLV W++V E PY
Sbjct: 533 FGATSTPDIDYLTTHLITKNPSTYKARLAKKFNPQIKIVHPDWIFECLVNWKKVDEKPYT 592
Query: 570 LLIQDPV 576
L++ P+
Sbjct: 593 LIVDSPI 599
>SPAC19B12.05c [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 723
Score = 396 bits (1017), Expect = e-110
Identities = 232/594 (39%), Positives = 333/594 (56%), Gaps = 48/594 (8%)
Query: 5 TNVKVTSDLPYPITVAQLYVKPGDHVEKGQRLFAYEYWDFQDVLVKYEEKTKKQRVDR-- 62
T + + + L YPI +A V G +V+KG L Y ++ + + +E + VDR
Sbjct: 6 TPIHLPNSLNYPIEIASCLVPQGSYVKKGTPLLLYRFFT---KVKEDQEDGSEVYVDREF 62
Query: 63 VATFDSPVSGTVKEWHCSVKDEFASANHEVITIRQDCNHDITYGGLCVQCGNTVDEEDNS 122
V F+ PV G + EW ++ + + V + + C H++ YGGLC CG + +D
Sbjct: 63 VEQFECPVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEVNYGGLCAICGKNITSQDYM 122
Query: 123 -------KNLTISHVNTNIKVSEQQAETLERSSLTRLREEKKLVLVVDLDQTVIHCGVDP 175
N++++H ++ VS ++A LE ++ RLR+EK+L L+VDLDQT+IH VDP
Sbjct: 123 GYSDMARANISMTHNTGDLTVSLEEASRLESENVKRLRQEKRLSLIVDLDQTIIHATVDP 182
Query: 176 TIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKPPARKSWYYVKLRPGLKEFFE 235
T+GEWM DP N NY L+DV+SF L++ P S YY+K RPGL +F +
Sbjct: 183 TVGEWMSDPGNVNYDVLRDVRSFNLQEGP-----------SGYTSCYYIKFRPGLAQFLQ 231
Query: 236 AVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSRDENGSLTTKSLERLFPMDQS 295
+S +E+HIYTM T++YA E+AKIIDPTG+LF DR+LSRD++GSL KSL RLFP D S
Sbjct: 232 KISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTS 291
Query: 296 MVVVIDDRGDVWNWFENLIKVVPYSFFVGIGDINSNFLPR-----QQNSVLHLGRHHRRK 350
MVVVIDDRGDVW+W NLIKVVPY FFVGIGDINSNFL + +Q ++ L K
Sbjct: 292 MVVVIDDRGDVWDWNPNLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPL---EIPK 348
Query: 351 QEEEKLISDIIDNEKKLKEKIDEEVKRQEEIISHIGDDNTRKEGGPPNKEDISKK-LEHS 409
E + + D I+ E + + D + S I + K+ N+E + ++ E
Sbjct: 349 DEPDSV--DEINEENEETPEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERV 406
Query: 410 ASLEVQQQNRPLAELQ--------KHLHNQTLLIDDDDELPHLSQILLRVHKEYFNQYTE 461
+LE+Q+ RPLA+ Q K + TLL + D EL L ++L +H Y+ + +
Sbjct: 407 TALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEEND 466
Query: 462 APKNPPDIKY-----LLPQMKYKVFQGCHFVFSGLIPLETDVRKADIVLWTDMFGATTSS 516
+ K+ ++P+MK KV +GC +FSG+IPL DV +DI W FGA
Sbjct: 467 ISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVL 526
Query: 517 DINYKXXXXXXXXXXXFKARLAKSFNPDIKIVHPDWLFECLVQWERVKESPYEL 570
D + K + A S +IK+V +WL E L QW+R+ ES Y L
Sbjct: 527 DFSVPPTHLIAAKIRTEKVKKAVSMG-NIKVVKLNWLTESLSQWKRLPESDYLL 579
>ECU07g0890 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 411
Score = 178 bits (452), Expect = 2e-44
Identities = 135/471 (28%), Positives = 212/471 (44%), Gaps = 84/471 (17%)
Query: 99 CNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNT-NIKVSEQQAETLERSSLTRLREEKK 157
CNH I G LC CG + EE + L + NT N+K++ ++A + + + L + K
Sbjct: 4 CNHPIRLGTLCGVCGMEIQEESH---LFCALYNTDNVKITHEEAVAIHKEKMEALEMQMK 60
Query: 158 LVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKPPA 217
L+LV+DLDQTV+H T G +L+ F ++
Sbjct: 61 LILVLDLDQTVLHT----TYGT----------SSLEGTVKFVID---------------- 90
Query: 218 RKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSRDE 277
+ Y VKLRP L +S +E+H+YTM TR+YA I +IIDP+G+ F DRI++RDE
Sbjct: 91 -RCRYCVKLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDE 149
Query: 278 NGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFENLIKVVPYSFFVGIGDINSNFLPRQQ 337
N + K L RLFP D +V++DDR DVW++ ENL+ + P+ +F + DI
Sbjct: 150 NQGVLVKRLSRLFPHDHRNIVILDDRPDVWDYCENLVLIRPFWYFNRV-DI--------- 199
Query: 338 NSVLHLGRHHRRKQEEEKLISDIIDNEKKLKEKIDEEVKRQEEIISHIGDDNTRKEGGPP 397
N L L R ++ E K + + + KK+++ R EI S + D G
Sbjct: 200 NDPLRLKRKIEKEAGENKALEEFVSKRKKIED------IRNPEIASRLDDMVLESSCGSE 253
Query: 398 NKEDISKKLEHSASLEVQQQNRPLAELQKHLHNQTLLIDDDDELPHLSQILLRVHKEYFN 457
ED S+ E EVQ + D EL ++ L +VH++YF
Sbjct: 254 GVEDDSRSTEEKEVSEVQS-----------------VASGDSELLKVAGFLRKVHRKYF- 295
Query: 458 QYTEAPKNPPDIKYLLPQMKYKVFQGCHFVFSGLIPLETDVRKADIVLWTDMFGATTSSD 517
++K +L +++ +VF G F + + +A +V +M+G
Sbjct: 296 -----ASKQRNVKRILRKIRRRVFGGDRFFVAEI------ANRAWLVKTIEMYGGIVG-- 342
Query: 518 INYKXXXXXXXXXXXFKARLAKSFNPDIKIVHPDWLFECLVQWERVKESPY 568
I LA+ F + V P W+ +C+ +RV+ Y
Sbjct: 343 IPESGVDFVVSSCEREAEYLAQKF--ECLAVSPKWIADCVYSLKRVEYGKY 391
>7291810 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 880
Score = 162 bits (411), Expect = 1e-39
Identities = 111/314 (35%), Positives = 158/314 (49%), Gaps = 38/314 (12%)
Query: 24 VKPGDHVEKGQRLFAYEYWDFQDVLVKYEEKTKKQRVD-RVATFDSPVSGTVKEWHCSVK 82
V+ G V Q LF Y+ V K + K D + + S +G VK+ +
Sbjct: 74 VREGQFVSAAQILFLYQP---VGVDAKDAKDAGKPGGDCAIQRYKSQRAGVVKK-RLRKE 129
Query: 83 DEFASANHEVITIRQDCNHDITYGGLCVQCGNTVDEEDNSKNLTIS----HVNTNIKVSE 138
E + ++ + +C H +C CG + + +N + S H ++KV++
Sbjct: 130 GELLTKGDAILEL-SECIHTTVIKDMCADCGADLRQNENGQTSEASVPMVHTMPDLKVTQ 188
Query: 139 QQAETLERSSLTRLREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSF 198
+ A+ L RL ++KLVL+VDLDQTVIH D P N ++ + F
Sbjct: 189 KLAQKLGHDDTRRLLADRKLVLLVDLDQTVIHTTNDTV-------PDN-----IKGIYHF 236
Query: 199 TLEDEPIIPSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIA 258
L +GP P WY+ +LRPG EF E +S +E+HI T R+YAH IA
Sbjct: 237 QL----------YGPHSP----WYHTRLRPGTAEFLERMSQLYELHICTFGARNYAHMIA 282
Query: 259 KIIDPTGELFGDRILSRDE--NGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFENLIKV 316
+++DP G+ F RILSRDE N + T +L+ LFP SMV +IDDR DVWN NLI+V
Sbjct: 283 QLLDPEGKFFSHRILSRDECFNATSKTDNLKALFPNGDSMVCIIDDREDVWNMASNLIQV 342
Query: 317 VPYSFFVGIGDINS 330
PY FF GDIN+
Sbjct: 343 KPYHFFQHTGDINA 356
Score = 80.9 bits (198), Expect = 6e-15
Identities = 59/227 (25%), Positives = 104/227 (44%), Gaps = 24/227 (10%)
Query: 352 EEEKLISD-----IIDNEKKLKEKID---EEVKRQEEIISHIGDDNTRKEGGPPNKEDIS 403
+ EK SD +ID+ K K + ++ E + S + ++ + S
Sbjct: 469 DAEKAASDGEDVVVIDDNSKESTKAEVPPTPAEKNEVVASSTTSPDEKRPSADADVATTS 528
Query: 404 KKLEHSASLEVQQQNRPLAELQKHLHNQTLLIDDDDELPHLSQILLRVHKEYFNQYTEAP 463
K A LE Q+Q E++ D DD L +L IL +HK +++ Y E
Sbjct: 529 KTPSLRAPLEGQKQ----IEIE----------DPDDYLLYLEVILRNIHKRFYSIYDETT 574
Query: 464 KNPPDIKYLLPQMKYKVFQGCHFVFSGLIPLETDVRKADIVLWTDMFGATTSSDINYKXX 523
+ P D+K ++P+++ +V +G + VFSGL+P + + ++ GA +I+ +
Sbjct: 575 EIP-DLKVIVPKIRSEVLRGKNLVFSGLVPTQMKLEQSRAYFIAKSLGAEVKPNIDKEIT 633
Query: 524 XXXXXXXXXFKARLAKSFNPDIKIVHPDWLFECLVQWERVKESPYEL 570
+K AK P IK+V+ +WL+ C +WE V+E + L
Sbjct: 634 HLVAVNAGTYKVNAAKK-EPAIKVVNANWLWTCAERWEHVEEKLFPL 679
>CE28931 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 747
Score = 148 bits (374), Expect = 2e-35
Identities = 108/313 (34%), Positives = 155/313 (49%), Gaps = 29/313 (9%)
Query: 91 EVITIRQDCNHDITYGGLCVQCGNTVDE---------EDNSKNLTISHVNTNIKVSEQQA 141
+VI +C H I +C CG + E E ++ N+++ H + VS+ A
Sbjct: 68 QVIATVSECTHAIVIKDMCATCGKDLREKGGRAGQRKEQSTANVSMIHHVPELIVSDTLA 127
Query: 142 ETLERSSLTRLREEKKLVLVVDLDQTVIHCGVDPTI--GEWMRDPKNPNYKALQDVKSFT 199
+ + + L +KLVL+VDLDQT+IH P E K K + K F
Sbjct: 128 KEIGSADENNLITNRKLVLLVDLDQTIIHTSDKPMTVDTENFFSEKTEKLKKNKINKDFK 187
Query: 200 LEDEPIIPSFYFGPKPPARKSW------YYVKLRPGLKEFFEAVSPHFEMHIYTMATRSY 253
+ SFY K + Y KLRP EF +S +EMHI T R Y
Sbjct: 188 ---KNFSSSFYVNDKHKDITKYNLHSRVYTTKLRPHTTEFLNKMSNMYEMHIVTYGQRQY 244
Query: 254 AHEIAKIIDPTGELFGDRILSRDE--NGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFE 311
AH IA+I+DP LF RILSRDE + T +L+ LFP ++VV+IDDR DVW + E
Sbjct: 245 AHRIAQILDPDARLFEQRILSRDELFSAQHKTNNLKALFPCGDNLVVIIDDRSDVWMYSE 304
Query: 312 NLIKVVPYSFFVGIGDINSNFLPRQQNSVLHLGRHHRRK--QEEEKLISDIIDNEKKLKE 369
LI++ PY FF +GDIN+ ++Q V H K +E E+++++I D K E
Sbjct: 305 ALIQIKPYRFFKEVGDINAPKNSKEQMPVQIEDDAHEDKVLEEIERVLTNIHD---KYYE 361
Query: 370 KIDEEVKRQEEII 382
K D ++ EE++
Sbjct: 362 KHD--LRGSEEVL 372
Score = 58.5 bits (140), Expect = 3e-08
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 437 DDDELPHLSQILLRVHKEYFNQYTEAPKNPP--DIKYLLPQMKYKVFQGCHFVFSGLIPL 494
+D L + ++L +H +Y+ ++ D+K ++ + ++KV GC VFSG++P+
Sbjct: 341 EDKVLEEIERVLTNIHDKYYEKHDLRGSEEVLLDVKEVIKEERHKVLDGCVIVFSGIVPM 400
Query: 495 ETDVRKADIVLWTDMFGATTSSDINYKXXXXXXXXXXXFKARLAKSFNPDIKIVHPDWLF 554
+ + DI FGA D+ K A N + V W++
Sbjct: 401 GEKLERTDIYRLCTQFGAVIVPDVTDDVTHVVGARYGTQKVYQANRLNKFVVTV--QWVY 458
Query: 555 ECLVQWERVKESPYEL 570
C+ +W + E+ ++L
Sbjct: 459 ACVEKWLKADENLFQL 474
>Hs16554589 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 867
Score = 139 bits (349), Expect = 2e-32
Identities = 99/286 (34%), Positives = 139/286 (47%), Gaps = 42/286 (14%)
Query: 92 VITIRQDCNHDITYGGLCVQCGNTVDEEDNSKN---------LTISHVNT--NIKVSEQQ 140
V+ + C+H + GLC +CG + + SKN T+S V++ + VS +Q
Sbjct: 107 VLVRLEGCSHPVVMKGLCAECGQDLTQLQ-SKNGKQQVPLSTATVSMVHSVPELMVSSEQ 165
Query: 141 AETLERSSLTRLREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTL 200
AE L R RL +KLVL+VDLDQT+IH T + + N
Sbjct: 166 AEQLGREDQQRLHRNRKLVLMVDLDQTLIH-----TTEQHCQQMSNKG------------ 208
Query: 201 EDEPIIPSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKI 260
I F G P + +LRP K+F E ++ +E+H++T +R YAH IA
Sbjct: 209 -----IFHFQLGRGEPM----LHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGF 259
Query: 261 IDPTGELFGDRILSRDE--NGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFENLIKVVP 318
+DP +LF RILSRDE + T +L LFP SMV +IDDR DVW + NLI V
Sbjct: 260 LDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDRKDVWKFAPNLITVKK 319
Query: 319 YSFFVGIGDINSNFLPRQQNSVLHLGRHHRRKQEEEKLISDIIDNE 364
Y +F G GD+N+ P + S +H R E + + D E
Sbjct: 320 YVYFQGTGDMNAP--PGSRESQTRKKVNHSRGTEVSEPSPPVRDPE 363
Score = 69.3 bits (168), Expect = 2e-11
Identities = 42/145 (28%), Positives = 69/145 (46%), Gaps = 11/145 (7%)
Query: 436 DDDDELPHLSQILLRVHKEYFNQY----TEAPKNPPDIKYLLPQMKYKVFQGCHFVFSGL 491
D+DD L +L +IL+RVH +Y+ +Y + + PDI+ ++P++K KV +FSGL
Sbjct: 585 DEDDHLIYLEEILVRVHTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGL 644
Query: 492 IPLETDVRKADIVLWTDMFGA------TTSSDINYKXXXXXXXXXXXFKARLAKSFNPDI 545
P + K GA S D + K A+ +
Sbjct: 645 HPTNFPIEKTREHYHATALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECG-HL 703
Query: 546 KIVHPDWLFECLVQWERVKESPYEL 570
+V+PDWL+ CL +W++V+E + L
Sbjct: 704 HVVNPDWLWSCLERWDKVEEQLFPL 728
>Hs16554587 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 961
Score = 139 bits (349), Expect = 2e-32
Identities = 99/286 (34%), Positives = 139/286 (47%), Gaps = 42/286 (14%)
Query: 92 VITIRQDCNHDITYGGLCVQCGNTVDEEDNSKN---------LTISHVNT--NIKVSEQQ 140
V+ + C+H + GLC +CG + + SKN T+S V++ + VS +Q
Sbjct: 107 VLVRLEGCSHPVVMKGLCAECGQDLTQLQ-SKNGKQQVPLSTATVSMVHSVPELMVSSEQ 165
Query: 141 AETLERSSLTRLREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTL 200
AE L R RL +KLVL+VDLDQT+IH T + + N
Sbjct: 166 AEQLGREDQQRLHRNRKLVLMVDLDQTLIH-----TTEQHCQQMSNKG------------ 208
Query: 201 EDEPIIPSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKI 260
I F G P + +LRP K+F E ++ +E+H++T +R YAH IA
Sbjct: 209 -----IFHFQLGRGEPM----LHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGF 259
Query: 261 IDPTGELFGDRILSRDE--NGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFENLIKVVP 318
+DP +LF RILSRDE + T +L LFP SMV +IDDR DVW + NLI V
Sbjct: 260 LDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDRKDVWKFAPNLITVKK 319
Query: 319 YSFFVGIGDINSNFLPRQQNSVLHLGRHHRRKQEEEKLISDIIDNE 364
Y +F G GD+N+ P + S +H R E + + D E
Sbjct: 320 YVYFQGTGDMNAP--PGSRESQTRKKVNHSRGTEVSEPSPPVRDPE 363
Score = 69.3 bits (168), Expect = 2e-11
Identities = 42/145 (28%), Positives = 69/145 (46%), Gaps = 11/145 (7%)
Query: 436 DDDDELPHLSQILLRVHKEYFNQY----TEAPKNPPDIKYLLPQMKYKVFQGCHFVFSGL 491
D+DD L +L +IL+RVH +Y+ +Y + + PDI+ ++P++K KV +FSGL
Sbjct: 585 DEDDHLIYLEEILVRVHTDYYAKYDRYLNKEIEEAPDIRKIVPELKSKVLADVAIIFSGL 644
Query: 492 IPLETDVRKADIVLWTDMFGA------TTSSDINYKXXXXXXXXXXXFKARLAKSFNPDI 545
P + K GA S D + K A+ +
Sbjct: 645 HPTNFPIEKTREHYHATALGAKILTRLVLSPDAPDRATHLIAARAGTEKVLQAQECG-HL 703
Query: 546 KIVHPDWLFECLVQWERVKESPYEL 570
+V+PDWL+ CL +W++V+E + L
Sbjct: 704 HVVNPDWLWSCLERWDKVEEQLFPL 728
>At5g58000_2 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 374
Score = 105 bits (262), Expect = 2e-22
Identities = 69/226 (30%), Positives = 120/226 (52%), Gaps = 18/226 (7%)
Query: 98 DCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTRLREEKK 157
+C H ++G +C CG ++E ++ +++ ++++E + L S L+ ++K
Sbjct: 1 ECEHPGSFGNMCFVCGQKLEET----GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRK 56
Query: 158 LVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKPPA 217
L LV+DLD T+++ + +RD K P + L+ + +L+D + G
Sbjct: 57 LYLVLDLDHTLLNTTI-------LRDLK-PEEEYLKS-HTHSLQDGCNVSG---GSLFLL 104
Query: 218 RKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSRDE 277
KLRP + F + S F M+IYTM R+YA ++AK++DP GE FGDR++SRD+
Sbjct: 105 EFMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDD 164
Query: 278 NGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFF 322
KSL+ + +S V+++DD + W +NLI + Y FF
Sbjct: 165 GTVRHEKSLDVVLG-QESAVLILDDTENAWPKHKDNLIVIERYHFF 209
>At3g17550 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 296
Score = 100 bits (248), Expect = 1e-20
Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 46/292 (15%)
Query: 96 RQDCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLER-SSLTRLRE 154
R C H G+C+ C +TV++ ++ +++S + A +R ++
Sbjct: 26 RSSCGHWYVRYGVCIACKSTVNKRHGR---AFDYLVQGLQLSHEAAAFTKRFTTQFYCLN 82
Query: 155 EKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPK 214
EKKL LV+DLD T++H + E + +++ S T ED + S Y
Sbjct: 83 EKKLNLVLDLDHTLLHSIRVSLLSETEK-------CLIEEACSTTREDLWKLDSDYL--- 132
Query: 215 PPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILS 274
KLRP + EF + + F M++YTM TR YA + K+IDP FGDR+++
Sbjct: 133 ---------TKLRPFVHEFLKEANELFTMYVYTMGTRVYAESLLKLIDPKRIYFGDRVIT 183
Query: 275 RDENGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFE-NLIKVVPYSFFVGIGDINSNFL 333
RDE+ + T L ++ VV++DD DVW + NL+++ Y FF G
Sbjct: 184 RDESPYVKTLD---LVLAEERGVVIVDDTSDVWTHHKSNLVEINEYHFFRVNG------- 233
Query: 334 PRQQNSVLHLGRHHRRKQEEEKLISDIIDNEKKLKE------KIDEEVKRQE 379
P + NS + K++E K + + K LKE ++ EE++ Q+
Sbjct: 234 PEESNS------YTEEKRDESKNNGGLANVLKLLKEVHYGFFRVKEELESQD 279
>At3g19600 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 601
Score = 93.6 bits (231), Expect = 1e-18
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 43/291 (14%)
Query: 98 DCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTRLR--EE 155
+C H G C+ C +TVD+ + H+++ +A L + +T+
Sbjct: 34 NCGHWYIRYGFCIVCKSTVDKTIEGRVFDGLHLSS-------EALALTKRLITKFSCLNM 86
Query: 156 KKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKP 215
KKL LV+DLD T+IH P + E + +++ S T ED + P
Sbjct: 87 KKLHLVLDLDLTLIHSVRVPCLSEAEK-------YLIEEAGSTTRED---LWKMKVRGDP 136
Query: 216 PARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSR 275
+ + VKLRP L EF + + F M++YT TR YA I K+IDP FG R+++R
Sbjct: 137 ISITIEHLVKLRPFLCEFLKEANEMFTMYVYTKGTRPYAEAILKLIDPKKLYFGHRVITR 196
Query: 276 DENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFFVGIGDINSNFLP 334
+E S TK+L+ + D+ VV++DD W N NL+ + Y++F
Sbjct: 197 NE--SPHTKTLDMVL-ADERGVVIVDDTRKAWPNNKSNLVLIGRYNYF------------ 241
Query: 335 RQQNSVLHLGRHHRRKQEEEKLISDIIDNEKKLKE------KIDEEVKRQE 379
R Q+ VL H K +E + + + K LK K++EEV+ Q+
Sbjct: 242 RSQSRVLK--PHSEEKTDESENNGGLANVLKLLKGIHHKFFKVEEEVESQD 290
Score = 90.9 bits (224), Expect = 6e-18
Identities = 72/280 (25%), Positives = 138/280 (48%), Gaps = 33/280 (11%)
Query: 50 KYEEKTKKQRV----DRVATFDSPVSGTVKEWHCSVKDEFASANHEVITIRQDCNHDITY 105
K EE+ + Q V V F S ++ ++ + +S ++ C H
Sbjct: 281 KVEEEVESQDVRLTMSVVENFSSEPKAKRRKIEPTINESSSS-----LSSSSSCGHWYIC 335
Query: 106 GGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTRLR--EEKKLVLVVD 163
G+C+ C +TV + S+ ++ +++S + A L + T+L EKKL LV+D
Sbjct: 336 HGICIGCKSTVKK---SQGRAFDYIFDGLQLSHE-AVALTKCFTTKLSCLNEKKLHLVLD 391
Query: 164 LDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKPPARKSWYY 223
LD T++H + P++ + + +++ S T +D + K +
Sbjct: 392 LDHTLLHTVMVPSLSQAEK-------YLIEEAGSATRDD-------LWKIKAVGDPMEFL 437
Query: 224 VKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSRDENGSLTT 283
KLRP L++F + + F M++YT +R YA ++ ++IDP FGDR++++ E+ +
Sbjct: 438 TKLRPFLRDFLKEANEFFTMYVYTKGSRVYAKQVLELIDPKKLYFGDRVITKTESPHM-- 495
Query: 284 KSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFF 322
K+L+ + ++ VV++DD +VW + NL+ + YS+F
Sbjct: 496 KTLDFVLAEERG-VVIVDDTRNVWPDHKSNLVDISKYSYF 534
>At2g04930 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 277
Score = 92.8 bits (229), Expect = 2e-18
Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 25/243 (10%)
Query: 92 VITIRQDCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTR 151
V T C H + G+C+ C + V + K ++ +++S + A L +S T+
Sbjct: 3 VTTSSSCCGHWYVFQGICIGCKSKVHKSQFRK---FDYIFKGLQLSNE-AVALTKSLTTK 58
Query: 152 --LREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSF 209
EKKL LV+DLD T++H + + + R +Q+ S T ED
Sbjct: 59 HSCLNEKKLHLVLDLDHTLLHSKLVSNLSQAER-------YLIQEASSRTRED------- 104
Query: 210 YFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFG 269
+ +P +KLRP +++F + + F M +YTM +R YA I ++IDP FG
Sbjct: 105 LWKFRPIGHPIDRLIKLRPFVRDFLKEANEMFTMFVYTMGSRIYAKAILEMIDPKKLYFG 164
Query: 270 DRILSRDENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFFVGIG-D 327
+R++++DE+ + T + L ++ VV++DD D+W + NLI++ Y +F G D
Sbjct: 165 NRVITKDESPRMKTLN---LVLAEERGVVIVDDTRDIWPHHKNNLIQIRKYKYFRRSGLD 221
Query: 328 INS 330
NS
Sbjct: 222 SNS 224
>At1g20320 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 342
Score = 92.4 bits (228), Expect = 2e-18
Identities = 74/232 (31%), Positives = 113/232 (47%), Gaps = 41/232 (17%)
Query: 99 CNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTRLR--EEK 156
C H G+C C +TVD + + H +++S + A + +S T+L E+
Sbjct: 20 CGHFFVRYGICCNCRSTVDRDYGRAFDYLVH---GLQLSHK-AVAVTKSLTTQLACLNER 75
Query: 157 KLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSF-----TLEDEPIIPSFYF 211
KL LV+DLD T++H + + E K L F TL+ E +I
Sbjct: 76 KLHLVLDLDHTLLHSIMISRLSE--------GEKYLLGESDFREDLWTLDREMLI----- 122
Query: 212 GPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDR 271
KLRP + EF + + F M++YTM R YA + K IDP FGDR
Sbjct: 123 -------------KLRPFVHEFLKEANEIFSMYVYTMGNRDYAQAVLKWIDPKKVYFGDR 169
Query: 272 ILSRDENGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFE-NLIKVVPYSFF 322
+++RDE+G +K+L+ L D+ VV++DD VW E NL+++ YS+F
Sbjct: 170 VITRDESG--FSKTLD-LVLADECGVVIVDDTRHVWPDHERNLLQITKYSYF 218
>At5g54210 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 306
Score = 84.7 bits (208), Expect = 4e-16
Identities = 62/228 (27%), Positives = 112/228 (48%), Gaps = 27/228 (11%)
Query: 98 DCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERSSLTRLR--EE 155
+C+H G+C C + V+ + + ++ +++S+ A T+ + T++ +
Sbjct: 31 NCDHFFVRYGICCNCRSNVERH---RGRSFDYLVDGLQLSDI-AVTVTKRVTTQITCFND 86
Query: 156 KKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKP 215
KKL LV+DLD T++H + + K Y ++ ED + Y
Sbjct: 87 KKLHLVLDLDHTLLHTVMISNL------TKEETYLIEEEDSR---EDLRRLNGGY----- 132
Query: 216 PARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSR 275
S + +KLRP + EF + + F M++YTM R YA + +IDP FGDR+++R
Sbjct: 133 ---SSEFLIKLRPFVHEFLKEANKMFSMYVYTMGDRDYAMNVLNLIDPEKVYFGDRVITR 189
Query: 276 DENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFF 322
+E+ + T L D+ VV++DD VW + NL+++ Y++F
Sbjct: 190 NESPYIKTLD---LVLADECGVVIVDDTPHVWPDHKRNLLEITKYNYF 234
>At5g23470 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 302
Score = 81.6 bits (200), Expect = 4e-15
Identities = 64/229 (27%), Positives = 109/229 (46%), Gaps = 29/229 (12%)
Query: 98 DCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVS-EQQAETLERSSLTRLREEK 156
+CNH +C+ C TVD N + + ++ +++S E T S T E+K
Sbjct: 29 NCNHWFVRNKICISCYTTVD---NFEGRSFDYLYKGMQMSNEALGFTKGLISQTSWLEDK 85
Query: 157 KLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFT--LEDEPIIPSFYFGPK 214
KL LV+DLDQT+IH + E + ++ +D+K F +E +I
Sbjct: 86 KLHLVLDLDQTLIHTIKTSLLYESEKYIIE-EVESRKDIKRFNTGFPEESLI-------- 136
Query: 215 PPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILS 274
KLRP + +F + + F M++YT YA + ++IDP FG+R+++
Sbjct: 137 ----------KLRPFVHQFLKECNEMFSMYVYTKGGYDYARLVLEMIDPDKFYFGNRVIT 186
Query: 275 RDENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFF 322
R E+ T L D+ +V++DD VW + +NL+++ Y +F
Sbjct: 187 RRESPGFKTLD---LVLADERGIVIVDDTSSVWPHDKKNLLQIARYKYF 232
>At1g43600 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 221
Score = 77.8 bits (190), Expect = 5e-14
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 147 SSLTRLREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPII 206
+ L + +++KKL LV+DLD T++H + L + + LE+
Sbjct: 8 TQLFQKKKKKKLHLVLDLDHTLLHSVL---------------VSDLSKREKYLLEETDSR 52
Query: 207 PSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGE 266
+ + + +KLRP L EF + F MH+YTM + SYA ++ K+IDP
Sbjct: 53 QDLW---RRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKV 109
Query: 267 LFGDRILSRDENGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFE-NLIKVVPYSFF 322
FG R+++R+ S KSL+ L D+ VV++DD VW + + NL+++ Y +F
Sbjct: 110 YFGKRVITRE--ASPFNKSLD-LLAADKRRVVIVDDTVHVWPFHKRNLLQITKYVYF 163
>At2g02290 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 302
Score = 77.0 bits (188), Expect = 9e-14
Identities = 61/228 (26%), Positives = 104/228 (44%), Gaps = 25/228 (10%)
Query: 97 QDCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAETLERS-SLTRLREE 155
++C+H +C C VD N + + ++ T I++S + +R S T E+
Sbjct: 28 RNCSHWFVRNKVCASCNTIVD---NYQGRSFDYLYTGIQMSNEALGFTKRLISQTSWLED 84
Query: 156 KKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKP 215
KKL LV+DLD T++H + E K T E E F
Sbjct: 85 KKLHLVLDLDHTLVHTIKVSQLSE--------------SEKYITEEVESRKDLRRFNTGF 130
Query: 216 PARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSR 275
P +KLR + +F + + F +++YT YA + ++IDP FG+R+++R
Sbjct: 131 PEES---LIKLRSFVHQFLKECNEMFSLYVYTKGGYDYAQLVLEMIDPDKIYFGNRVITR 187
Query: 276 DENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFF 322
E+ T L D+ +VV+DD+ VW + +NL+++ Y +F
Sbjct: 188 RESPGFKTLD---LVLADERGIVVVDDKSSVWPHDKKNLLQIARYKYF 232
>At1g43610 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 255
Score = 77.0 bits (188), Expect = 9e-14
Identities = 54/177 (30%), Positives = 89/177 (49%), Gaps = 22/177 (12%)
Query: 147 SSLTRLREEKKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPII 206
+ L + ++KKL LV+DLD T++H + L + + LE+
Sbjct: 42 TQLFSVTKKKKLHLVLDLDHTLLHSVL---------------VSDLSKREKYLLEETDSR 86
Query: 207 PSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGE 266
+ + + +KLRP L EF + F MH+YTM + SYA ++ K+IDP
Sbjct: 87 QDLW---RRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKV 143
Query: 267 LFGDRILSRDENGSLTTKSLERLFPMDQSMVVVIDDRGDVWNWFE-NLIKVVPYSFF 322
FG R+++R+ S KSL+ L D+ VV++DD VW + + NL+++ Y +F
Sbjct: 144 YFGKRVITRE--ASPFNKSLD-LLAADKRRVVIVDDTVHVWPFHKRNLLQITKYIYF 197
>At2g33540 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 1066
Score = 76.6 bits (187), Expect = 1e-13
Identities = 62/195 (31%), Positives = 95/195 (47%), Gaps = 30/195 (15%)
Query: 140 QAETLERSSLTRLREE------KKLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQ 193
Q ++R + RL E+ +KL LV+D+D T+++ + R + K Q
Sbjct: 881 QRVAIQRERVRRLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVES--RHEEILRKKEEQ 938
Query: 194 DVKSFTLEDEPIIPSFYFGPKPPARKSWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSY 253
D ++P F F + KLRPG+ F E S +E+H+YTM + Y
Sbjct: 939 D------REKPYRHLFRF------LHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLY 986
Query: 254 AHEIAKIIDPTGELFGDRILSRDENGS--------LTTKSLERLFPMDQSMVVVIDDRGD 305
A E+AK++DP G LF R++S+ ++G +K LE + M+ S VV+IDD
Sbjct: 987 ATEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESS-VVIIDDSVR 1045
Query: 306 VWNWFE-NLIKVVPY 319
VW + NLI V Y
Sbjct: 1046 VWPQHKMNLIAVERY 1060
>At3g15330 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 305
Score = 75.9 bits (185), Expect = 2e-13
Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 40/275 (14%)
Query: 98 DCNHDITYGGLCVQCGNTVDEEDNSKNLTISHVNTNIKVSEQQAE-TLERSSLTRLREEK 156
+C+H G+C C V + ++ + +++S + T ++L + K
Sbjct: 19 NCSHLFVRHGICFACKKKVSCVHGRE---FGYLFSGLRLSHEAVSFTKHLTTLVSVYGRK 75
Query: 157 KLVLVVDLDQTVIHCGVDPTIGEWMRDPKNPNYKALQDVKSFTLEDEPIIPSFYFGPKPP 216
KL LV+DLD T+IH K N L + + +++E G +
Sbjct: 76 KLHLVLDLDHTLIH------------SMKTSN---LSKAEKYLIKEEKS------GSRKD 114
Query: 217 ARK-SWYYVKLRPGLKEFFEAVSPHFEMHIYTMATRSYAHEIAKIIDPTGELFGDRILSR 275
RK + VK RP ++EF + + F M YT +Y + ++IDP FGDRI++R
Sbjct: 115 LRKYNNRLVKFRPFVEEFLKEANKLFTMTAYTKGGSTYGQAVVRMIDPNKIYFGDRIITR 174
Query: 276 DENGSLTTKSLERLFPMDQSMVVVIDDRGDVW-NWFENLIKVVPYSFFVGIGDINSNFLP 334
E+ L T L D+ +V++D+ +VW + NL+++ Y +F G
Sbjct: 175 KESPDLKTLD---LVLADERGIVIVDNTPNVWPHHKRNLLEITSYFYFKNDG-------- 223
Query: 335 RQQNSVLHLGRHHRRKQEEEKLISDIIDNEKKLKE 369
+N + + RK +E + +++ K LKE
Sbjct: 224 --KNMMRSRLSYAERKSDESRTKRALVNLLKFLKE 256
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,886,860
Number of Sequences: 60738
Number of extensions: 1914365
Number of successful extensions: 7867
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7769
Number of HSP's gapped (non-prelim): 42
length of query: 719
length of database: 30,389,216
effective HSP length: 114
effective length of query: 605
effective length of database: 23,465,084
effective search space: 14196375820
effective search space used: 14196375820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)