ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV0456   suspect: LH   K     KOG4336  Transcription                                                  TBP-associated transcription factor Prodos

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0456  145628 143943 -562 
         (562 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YML114c [K] KOG4336 TBP-associated transcription factor Prodos        121   3e-27

>YML114c [K] KOG4336 TBP-associated transcription factor Prodos
          Length = 510

 Score =  121 bits (303), Expect = 3e-27
 Identities = 100/366 (27%), Positives = 157/366 (42%), Gaps = 37/366 (10%)

Query: 16  TDQRRVRLDKLPNLNEVPHAN---PMERLFAQAVLLQLKTLNKNVVISQLAFDDLCYVXX 72
           T    V+L  LP+L E+ H     P+  +  + VL QL +LN  + IS  A D+L  +  
Sbjct: 12  TQSTIVQLRNLPDLTEISHLEIDAPVVEILKKTVLFQLNSLN--ICISNFALDELVNLVT 69

Query: 73  XXXXXXXXXXXXITQVQRRTKISKLDLNLYFKGIGMDLKDLNGQVEISNFVHGKFKDEAN 132
                       +T +QRR++ S+ DL L  +   +D   L  Q + S F+  K   E  
Sbjct: 70  VQMDGMFRNLHNLTLLQRRSQASQADLKLLLREFNLDAPSLYQQFQASEFIKSKHSTEYE 129

Query: 133 ALNETVLKVKQQFMXXXXXXXXXXXXXXXFFVQDVDILNLLPSSNKSNKYVPSWLPELPP 192
            L                              Q  +I  LLP SN   K +PSWLP  PP
Sbjct: 130 KLMSW-----SSLAALPHNEEDEEDELNNIEEQQNEINVLLPPSNPLEKQIPSWLPNFPP 184

Query: 193 DHTYKFTSLYKRPITDERLMKKKLLEEGRLSEKALLNMLSQVVNQDPLVALNKDSDQSAN 252
           DHTYKFT  +  PITD + +KK++++E + SEKALLN+         L  ++  S+    
Sbjct: 185 DHTYKFTPEFNHPITDLKTIKKEIVKESQESEKALLNL------NKSLSHISSASNTPQP 238

Query: 253 NAALSEHIKESQLET-DLIFDPHKTIPTDKEWGTTTVLHGIESFNLSPVKNFNVLEYCKK 311
                E   E QLE      +  K   T+K            SFN +     N+ +Y K 
Sbjct: 239 PGLDDEDAIEQQLEIWGNALEERKPTITEK------------SFNEN-----NIEQYAKY 281

Query: 312 RDAIVKRRAERAENQVSNKRRNPFIR-GAMICSPYGQGSTKSRKSVENQLKTMLRRSYLG 370
           R  + + R  + E     + +NPF++    +  P  +   +S K+++  ++   R+S   
Sbjct: 282 RVELARERVTKFEVNQLKRTKNPFLKISETLYLP--ESPHQSHKTIQKTIELQFRKSMTL 339

Query: 371 LIDSIP 376
            + ++P
Sbjct: 340 FMHNLP 345


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,414,303
Number of Sequences: 60738
Number of extensions: 1154763
Number of successful extensions: 3101
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3098
Number of HSP's gapped (non-prelim): 2
length of query: 562
length of database: 30,389,216
effective HSP length: 112
effective length of query: 450
effective length of database: 23,586,560
effective search space: 10613952000
effective search space used: 10613952000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)