ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0528 good U KOG3198 Intracellular trafficking, secretion, and vesicular transport Signal recognition particle, subunit Srp19
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0528 166129 165320 -270
(270 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML105c [U] KOG3198 Signal recognition particle subunit Srp19 299 3e-81
SPCC126.15c [U] KOG3198 Signal recognition particle subunit Srp19 81 2e-15
At1g48160 [U] KOG3198 Signal recognition particle subunit Srp19 71 1e-12
ECU08g0800 [U] KOG3198 Signal recognition particle subunit Srp19 60 2e-09
CE27426 [U] KOG3198 Signal recognition particle subunit Srp19 57 2e-08
Hs4507213 [U] KOG3198 Signal recognition particle subunit Srp19 51 2e-06
>YML105c [U] KOG3198 Signal recognition particle subunit Srp19
Length = 273
Score = 299 bits (765), Expect = 3e-81
Identities = 146/266 (54%), Positives = 190/266 (70%), Gaps = 17/266 (6%)
Query: 15 NLEMDLAELDSTMKTPVAPKIVPTVVRSQDQEEEXX-------XXXXXXXXXXXXXFNFV 67
+L+M+LAELD +++TP+APKI P VVRSQDQE +F+
Sbjct: 15 DLDMELAELDPSLRTPIAPKITPKVVRSQDQENPAFLPGTNNNSNSNNNSSNEKEQLSFI 74
Query: 68 NSTTGQVEKSHSLTKEELDEIKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIAD 127
N TG+VE+S +++K++L+E+K FQ+LYPCYFD R+H +GRR PK+L VENPLAKT+AD
Sbjct: 75 NPKTGKVERSEAISKKDLEEVKRFQVLYPCYFDINRSHKEGRRVPKELAVENPLAKTMAD 134
Query: 128 AARSLGIPSIFEGSKTHPQDFGNPGRVRVLIKENGKPFVSGI---DNKRVLMKRIGEYLK 184
A R LGI IFEG K HPQDFGNPGR+RVL KENG+ + KR LMK +GEY+K
Sbjct: 135 AVRELGILCIFEGEKCHPQDFGNPGRIRVLFKENGQLIGAATKFKGGKRQLMKAVGEYMK 194
Query: 185 SHPTTLESVKQLPYGPDFDNVEPKKIPLLKGTAMNDIVPLHSPYLTQHPMTKSLYDAXXX 244
HPTT+ES++++PYGPDFDN+E KKIP +KG MN+IVPLHSP+L HPMTKS+Y+
Sbjct: 195 RHPTTIESLREIPYGPDFDNIEFKKIPRVKGFKMNEIVPLHSPFLMGHPMTKSVYE---- 250
Query: 245 XXXAQQVSAPEKQMKMPKNKFRVVRR 270
+++A EK K PKNK++VVRR
Sbjct: 251 ---TPKITAAEKSFKPPKNKYKVVRR 273
>SPCC126.15c [U] KOG3198 Signal recognition particle subunit Srp19
Length = 199
Score = 80.9 bits (198), Expect = 2e-15
Identities = 56/152 (36%), Positives = 77/152 (49%), Gaps = 19/152 (12%)
Query: 93 MLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQDFGNPG 152
+LYP YFD R + R PKD + NPLAK IAD R LG E KTHP D+ NPG
Sbjct: 5 ILYPIYFDKSRPR-RFRCVPKDKAILNPLAKNIADVVRDLGYKCKLEPLKTHPADWVNPG 63
Query: 153 RVRVLIKENGKPFVSGIDNKRVLMKRIGEYLKSHPTTLESVKQLPYGPDFDNVEPKKIP- 211
RV +++ E K+ ++ I + L PT VK P NV P ++P
Sbjct: 64 RVEMVLPEK--------IQKKYVINEIAKVLLLRPT----VKTDPLSLPIQNV-PARLPE 110
Query: 212 ----LLKGTAMNDIVPLHSPYLTQHPMTKSLY 239
KG N I+PLHSP L+ ++++++
Sbjct: 111 NPPAYPKGVLGNTILPLHSPALSGGGISENMF 142
>At1g48160 [U] KOG3198 Signal recognition particle subunit Srp19
Length = 145
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/101 (37%), Positives = 60/101 (58%), Gaps = 1/101 (0%)
Query: 88 IKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQD 147
IK++ ++YP Y ++++T A+GRR ENP I+D + L +PS E K +P+D
Sbjct: 8 IKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPRD 67
Query: 148 FGNPGRVRVLIK-ENGKPFVSGIDNKRVLMKRIGEYLKSHP 187
F GRVRV +K E+G I +++ LM++I E + HP
Sbjct: 68 FMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHP 108
>ECU08g0800 [U] KOG3198 Signal recognition particle subunit Srp19
Length = 137
Score = 60.5 bits (145), Expect = 2e-09
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 87 EIKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQ 146
E K F LYP Y D+ R+ ++GR+ K++CV+ P I +A L I E SK HP+
Sbjct: 2 ESKHF-CLYPIYMDSARSLSEGRKYRKEICVQRPRYHEIKNALEKLEIEYTDEPSKKHPR 60
Query: 147 DFGNPGRVRVLIKENGKPFV 166
DF N GR R+ KE G+ FV
Sbjct: 61 DFFNSGRFRIK-KEYGRLFV 79
>CE27426 [U] KOG3198 Signal recognition particle subunit Srp19
Length = 254
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/87 (35%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Query: 79 SLTKEELDEIKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIF 138
S+ E L K + ++YP Y D ++T QGR+ + L VENP + I D ++G +
Sbjct: 3 SVASEPLSSQKRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLL 62
Query: 139 EGSKTHP----QDFGNPGRVRVLIKEN 161
E +K +P +DF GRVRV +K +
Sbjct: 63 ERTKCYPRDGERDFEVQGRVRVQLKND 89
>Hs4507213 [U] KOG3198 Signal recognition particle subunit Srp19
Length = 144
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 91 FQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQDFGN 150
F +YP Y + ++T A+GRR P VENP A I D ++G+ E +K + +++
Sbjct: 15 FICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNR 74
Query: 151 P----GRVRVLIKE 160
GRVRV +K+
Sbjct: 75 DVQYRGRVRVQLKQ 88
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,663,736
Number of Sequences: 60738
Number of extensions: 607804
Number of successful extensions: 1362
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 30,389,216
effective HSP length: 105
effective length of query: 165
effective length of database: 24,011,726
effective search space: 3961934790
effective search space used: 3961934790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)