ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0542 normal AD KOG2809 Cell cycle control, cell division, chromosome partitioning Telomerase elongation inhibitor/RNA maturation protein PINX1 r_klactIV0542 normal AD KOG2809 RNA processing and modification Telomerase elongation inhibitor/RNA maturation protein PINX1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0542  171784 171239 -182 
         (182 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.02 [AD] KOG2809 Telomerase elongation inhibitor/RNA mat...    72   5e-13
7302027 [AD] KOG2809 Telomerase elongation inhibitor/RNA maturat...    52   6e-07
Hs18549312 [AD] KOG2809 Telomerase elongation inhibitor/RNA matu...    50   2e-06

>SPAC1952.02 [AD] KOG2809 Telomerase elongation inhibitor/RNA maturation
          protein PINX1
          Length = 224

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 31/76 (40%), Positives = 48/76 (62%), Gaps = 2/76 (2%)

Query: 3  SKGYLKSYGWQEGEALRNGGLKKPILVKHKKDKKGLGCAPGHDDSEAWWERLFDGQLRNL 62
          SK YL S+GW+EG AL+ GGL KPIL   K +  GLG    HD ++ WW+ +F  QL+++
Sbjct: 26 SKRYLNSFGWEEGNALKEGGLTKPILTSRKYNTHGLGAK--HDIADQWWDNVFSAQLQSI 83

Query: 63 DIKSGSDGISFKQNEV 78
           + + +  ++ + N V
Sbjct: 84 QVNTDNGKVAVQSNGV 99


>7302027 [AD] KOG2809 Telomerase elongation inhibitor/RNA maturation
          protein PINX1
          Length = 294

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 3  SKGYLKSYGWQEGEAL--RNGGLKKPILVKHKKDKKGLGCAPGHDDSEAWWERLFDGQLR 60
          +K  L  YGW+EG+ L   N G+  P+    K D  GLG     + ++ WWER F+    
Sbjct: 4  AKKILGKYGWKEGDGLGKNNTGIAVPLKAALKFDNAGLGVDRAQEFNDHWWERCFNEAAS 63

Query: 61 NLDIKSGSDG 70
          N+D++   DG
Sbjct: 64 NVDVQIQQDG 73


>Hs18549312 [AD] KOG2809 Telomerase elongation inhibitor/RNA maturation protein
           PINX1
          Length = 370

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 7   LKSYGWQEGEAL--RNGGLKKPILVKHKKDKKGLGCAPGHDDSEAWWERLFDGQLRNLDI 64
           L  +GW +G+ L  +  G+ + + V  K+D  G+G  P  + +  WW  LF+    NL +
Sbjct: 19  LLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAANLVV 78

Query: 65  KSGSDGISFKQNEVVASSISKSDSP----LYRSFVR 96
           ++G DG+  +    ++   ++ + P    LY+ FV+
Sbjct: 79  ETGQDGVQIRS---LSKETTRYNHPKPNLLYQKFVK 111


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,794,257
Number of Sequences: 60738
Number of extensions: 318188
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 30,389,216
effective HSP length: 100
effective length of query: 82
effective length of database: 24,315,416
effective search space: 1993864112
effective search space used: 1993864112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)