ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0554 good J KOG3185 Translation, ribosomal structure and biogenesis Translation initiation factor 6 (eIF-6)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0554 176644 175910 -245
(245 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR016c [J] KOG3185 Translation initiation factor 6 (eIF-6) 463 e-130
SPCC1919.09 [J] KOG3185 Translation initiation factor 6 (eIF-6) 391 e-109
At3g55620 [J] KOG3185 Translation initiation factor 6 (eIF-6) 367 e-102
7291652 [J] KOG3185 Translation initiation factor 6 (eIF-6) 367 e-102
Hs4504771 [J] KOG3185 Translation initiation factor 6 (eIF-6) 363 e-100
CE17565 [J] KOG3185 Translation initiation factor 6 (eIF-6) 310 9e-85
At2g39820 [J] KOG3185 Translation initiation factor 6 (eIF-6) 296 2e-80
ECU04g0780 [J] KOG3185 Translation initiation factor 6 (eIF-6) 233 2e-61
>YPR016c [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 245
Score = 463 bits (1191), Expect = e-130
Identities = 232/245 (94%), Positives = 242/245 (98%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MATRTQFENSNEIGVFSKLTN+YCLVA+GGSENFYSAFEAELGDAIPI HTTIAGTRI+G
Sbjct: 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
RMTAGNRRGLLVPTQTTDQELQHLRN LPD+VK+QRVEERLSALGNVICCNDYVALVHPD
Sbjct: 61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
IDRETEELI+DVLGVEVFRQTISGN+LVGSYC+LSNQGGLVHPQT+VQDQEELSSLLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRDTL 240
LVAGTVNRGS VVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPE+ISGNLRDTL
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240
Query: 241 IETYS 245
IETYS
Sbjct: 241 IETYS 245
>SPCC1919.09 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 244
Score = 391 bits (1004), Expect = e-109
Identities = 190/245 (77%), Positives = 218/245 (88%), Gaps = 1/245 (0%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MA R QFENSNEIGVFS LTNSY LVALGGSENFYS FEAELGD +P+ HTTI GTRI+G
Sbjct: 1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
R+T GNR+GLLVP+ TTD ELQHLRN LPD VK+QRV+ERLSALGN++ CNDYVALVHPD
Sbjct: 61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
I+RETEE+IADVL VEVFRQT++GNVL GSYCALSNQG LVHP+T++Q+Q+ELSSLLQVP
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRDTL 240
LVAGT+NRGS V+GAG+VVND+ A GLDTTA EL+V ESIF+LQDAQP AI N RDTL
Sbjct: 181 LVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTL 239
Query: 241 IETYS 245
+E+Y+
Sbjct: 240 VESYT 244
>At3g55620 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 245
Score = 367 bits (942), Expect = e-102
Identities = 179/244 (73%), Positives = 212/244 (86%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MATR QFEN+ E+GVFSKLTN+YCLVA+GGSENFYSAFE+EL D IPI T+I GTRI+G
Sbjct: 1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
R+ AGN+ GLLVP TTDQELQHLRN LPD V VQR++ERLSALGN I CNDYVAL H D
Sbjct: 61 RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
+D+ETEE+IADVLGVEVFRQTI+GN+LVGSYCALSN+GG+VHP T+V+D EELS+LLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRDTL 240
LVAGTVNRGS+V+ AGM VND+ + G DTTA ELSVI+SIF+L++AQP +I +R +L
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240
Query: 241 IETY 244
I+TY
Sbjct: 241 IDTY 244
>7291652 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 245
Score = 367 bits (942), Expect = e-102
Identities = 178/245 (72%), Positives = 210/245 (85%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MA R QFEN+++IGVF+KLTN+YCLVA+GGSE FYSAFEAELGD IP+ H + G RI+G
Sbjct: 1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
R+T GNR GLLVP TTD+ELQHLRN LPDAVK+ RVEERLSALGNVI CNDYVALVHPD
Sbjct: 61 RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
+D+ETEE+IADVL VEVFRQTI+ N LVGSY LSNQGG+VHP+T++QDQ+ELSSLLQVP
Sbjct: 121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRDTL 240
LVAGTVNRGS+V+ AGMVVND+L+ G++TTA E+SVIES+F+L AQP ++ LR L
Sbjct: 181 LVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAAL 240
Query: 241 IETYS 245
IE S
Sbjct: 241 IEDMS 245
>Hs4504771 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 245
Score = 363 bits (932), Expect = e-100
Identities = 173/243 (71%), Positives = 208/243 (85%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MA R FEN+ EIG F+KLTN+YCLVA+GGSENFYS FE EL D IP+ H +IAG RI+G
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
RM GNR GLLVP TTDQELQH+RN LPD V+++RVEERLSALGNV CNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
+DRETEE++ADVL VEVFRQT++ VLVGSYC SNQGGLVHP+T+++DQ+ELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRDTL 240
LVAGTVNRGS+V+ AGMVVND+ A GLDTT+ ELSV+ES+F+L +AQP I+ ++RD+L
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 241 IET 243
I++
Sbjct: 241 IDS 243
>CE17565 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 246
Score = 310 bits (795), Expect = 9e-85
Identities = 153/244 (62%), Positives = 194/244 (78%), Gaps = 1/244 (0%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
MA R +E SN++GVF LTNSYCLV +GG++NFYS EAEL D IP+ HT+IA TRIVG
Sbjct: 1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
R+T GNR GLLVP TTDQELQHLRN LPD V ++RV+ERLSALGNVI CND+VA+VH +
Sbjct: 61 RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
I ETE+ + +VL VEVFR +++ N LVGSYC LS+ G LV +T + Q E+++LLQ+P
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL-QDAQPEAISGNLRDT 239
+VAGT NRGS+++GAGMVVND++A GLD+T+ ELSV+ESIF+L + P +IS LRDT
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDT 240
Query: 240 LIET 243
LIE+
Sbjct: 241 LIES 244
>At2g39820 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 247
Score = 296 bits (757), Expect = 2e-80
Identities = 146/246 (59%), Positives = 191/246 (77%), Gaps = 2/246 (0%)
Query: 1 MATRTQFENSN-EIGVFSKLTNSYCLV-ALGGSENFYSAFEAELGDAIPIAHTTIAGTRI 58
MATR Q++N+N EIGVFSKLTN+YCLV A S NF++ +E++L IPI T+I G+
Sbjct: 1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGT 60
Query: 59 VGRMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVH 118
+G + GN+ GLL+ TDQELQHLR+ LPD V VQR+EE + ALGN I CNDYVALVH
Sbjct: 61 IGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVH 120
Query: 119 PDIDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQ 178
P ++++TEE+I+DVLGVEV+RQTI+ N LVGSYC+LSN GG+VH T V++ EL++L+Q
Sbjct: 121 PKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQ 180
Query: 179 VPLVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPEAISGNLRD 238
VPLVAGTVNRGSQV+ AG+ VND+ A G DTTA ELSV+ +IF+L +QP+ + +R
Sbjct: 181 VPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRK 240
Query: 239 TLIETY 244
+LI+TY
Sbjct: 241 SLIDTY 246
>ECU04g0780 [J] KOG3185 Translation initiation factor 6 (eIF-6)
Length = 248
Score = 233 bits (593), Expect = 2e-61
Identities = 118/228 (51%), Positives = 158/228 (68%), Gaps = 2/228 (0%)
Query: 1 MATRTQFENSNEIGVFSKLTNSYCLVALGGSENFYSAFEAELGDAIPIAHTTIAGTRIVG 60
M+ R FE S+EIG + LTN+YC++ S N + + AIPI TTI R VG
Sbjct: 8 MSYRIDFEGSSEIGAYMSLTNTYCVIGRSQSNNVLKFLQENV--AIPIVETTINSIRSVG 65
Query: 61 RMTAGNRRGLLVPTQTTDQELQHLRNCLPDAVKVQRVEERLSALGNVICCNDYVALVHPD 120
GNR GLLVP TDQE+ H+RN LP+ V V+R+EERL+ALGNVI CND++A++H D
Sbjct: 66 SQCRGNRHGLLVPHTITDQEIMHIRNSLPEDVVVRRIEERLNALGNVILCNDHIAIIHGD 125
Query: 121 IDRETEELIADVLGVEVFRQTISGNVLVGSYCALSNQGGLVHPQTTVQDQEELSSLLQVP 180
+D+E+E+LI DVL V V+RQ I LVG++ AL+NQG LVHP T+ + Q+ELS LL+V
Sbjct: 126 LDKESEDLIRDVLQVHVYRQNIGQEPLVGTFGALNNQGMLVHPFTSTECQKELSELLEVN 185
Query: 181 LVAGTVNRGSQVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQ 228
+VAGT+N GSQ VG G+V ND++ + G+ TT E++VIE +F L Q
Sbjct: 186 VVAGTINGGSQCVGGGVVANDWMCIAGIKTTNVEMAVIEGVFDLTGDQ 233
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,486,828
Number of Sequences: 60738
Number of extensions: 537936
Number of successful extensions: 1243
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 8
length of query: 245
length of database: 30,389,216
effective HSP length: 104
effective length of query: 141
effective length of database: 24,072,464
effective search space: 3394217424
effective search space used: 3394217424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)