ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV0563   suspect: LH   T     KOG4363  Signal transduction mechanisms                                 Putative growth response protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0563  178880  180685 602  
         (602 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPR018w [T] KOG4363 Putative growth response protein                  297   3e-80

>YPR018w [T] KOG4363 Putative growth response protein
          Length = 606

 Score =  297 bits (761), Expect = 3e-80
 Identities = 166/383 (43%), Positives = 237/383 (61%), Gaps = 22/383 (5%)

Query: 220 SQSRIGNFFKKATVSSSEQSVTSDFKKHFLPFYIKSDVIMANTWKMDPQKLKENVPRID- 278
           +QSRIGNFFKK + S++     SD++K FLPFY K  V ++N WK+   +L+ +  +ID 
Sbjct: 226 AQSRIGNFFKKLSDSNTPVVEKSDYEKFFLPFYAKDGVRVSNKWKLTKVELEGSKRKIDD 285

Query: 279 KLMKTEDRISS---VEWMNSFKCHHGYEIKLTAVEVLQTMTSKKKTDEELSALLNEVPQK 335
           +L+ ++D+ SS   + W+ S +   G++IK  AV+VLQ M  K+KTD+EL +LL +VP K
Sbjct: 286 ELLNSKDKTSSDDLLNWLQSRRLPRGHKIKRKAVDVLQQMPLKEKTDDELQSLLAQVPHK 345

Query: 336 FIKFYENVRPPYVGTYSKKLTLPNNNPFSTEGTGFDYGYDSDLDWVXXXXXXXXXXXXXX 395
           +IKFYENVRPP++GTYS   TLP N+PFST+GTGF+Y YDSD++WV              
Sbjct: 346 YIKFYENVRPPFIGTYSMDFTLPPNDPFSTKGTGFNYDYDSDVEWV-NEEEEGEVDNLES 404

Query: 396 XXXXXXXXXXXXXXXXXXXXXFLDKDENENM-----ARKKFVGPLIPTIKLRKDTDKLDD 450
                                FLD +EN ++     A++KFVGPLIPTI L+ + + L +
Sbjct: 405 GEEEEEEEDDEDVPSEGEFDGFLDSEENSDLDGLPCAKRKFVGPLIPTICLKSNFENLSE 464

Query: 451 ESKQYFALVSVECMFQDQCFPVDPYKAPN-----KRPAVEDGSFETTSSKNPATKKSKSL 505
           E+K+Y   +  E + +    P+DP+K P       + +  D   +T S      KK K++
Sbjct: 465 ENKRYLQQLKAEVIIETD-GPIDPFKEPKTSSLPSKRSNSDLQAQTASQSQSPEKKQKAM 523

Query: 506 ITEPKHLLQLLEQVHDCTFSLSTVVEIIQKHLPQYKKDTIKNSVKEYAAKST-KGD--RR 562
           IT+P  LL+L + V D TFSL TV EI QK+LPQY K TIKN++KEYA +S+ KGD  R+
Sbjct: 524 ITDPMDLLRLFDGVQDSTFSLGTVTEIAQKNLPQYNKQTIKNTIKEYAIRSSGKGDLPRK 583

Query: 563 WEVKDMNNWEHLKSS---PTPRL 582
           W +KD  NWE+L+++   PTP L
Sbjct: 584 WVIKDAQNWENLRANANMPTPSL 606


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,878,819
Number of Sequences: 60738
Number of extensions: 1077413
Number of successful extensions: 3468
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3461
Number of HSP's gapped (non-prelim): 4
length of query: 602
length of database: 30,389,216
effective HSP length: 112
effective length of query: 490
effective length of database: 23,586,560
effective search space: 11557414400
effective search space used: 11557414400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)