ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0598 suspect: HSP TU KOG0998 Intracellular trafficking, secretion, and vesicular transport Synaptic vesicle protein EHS-1 and related EH domain proteins
r_klactIV0598 suspect: HSP TU KOG0998 Signal transduction mechanisms Synaptic vesicle protein EHS-1 and related EH domain proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0598 188350 190263 638
(638 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL083w [TU] KOG0998 Synaptic vesicle protein EHS-1 and related ... 183 6e-46
YKR019c [TU] KOG0998 Synaptic vesicle protein EHS-1 and related ... 179 1e-44
SPAC1687.09 [TU] KOG0998 Synaptic vesicle protein EHS-1 and rela... 78 4e-14
>YJL083w [TU] KOG0998 Synaptic vesicle protein EHS-1 and related EH domain
proteins
Length = 604
Score = 183 bits (465), Expect = 6e-46
Identities = 98/213 (46%), Positives = 122/213 (57%), Gaps = 43/213 (20%)
Query: 435 SHKRKSFNEDKPWKSHVDIGYISERERKRYEGIWVTNRNSYLELLPWWNQPLXXXXXXXX 494
SHK FNEDKPWKSH D+G+I+E+ERKRYE +WV+NR SYL LLPWW
Sbjct: 421 SHK---FNEDKPWKSHRDLGFITEQERKRYESMWVSNRYSYLRLLPWWPS---------- 467
Query: 495 XXXXMDXXXXXXXXXXXXXXXXXXXXXXXXXDADIPEDGLMLNLIVMEIWSRSNLSNQLL 554
++P+DGLMLNL+V +IW RSNL LL
Sbjct: 468 --------------------LANEDDESHLQPLNLPQDGLMLNLVVKDIWYRSNLPRDLL 507
Query: 555 GQIYDKVDTRHDGTLNRQSFLTGMWLVDQCLYGRKLPKQIDQRVWDSVDKFVISIXXXXX 614
QIY+ VDTR DGTL+R+SF+ GMWLVDQCLYGRKL ++DQRVW+SVD +V+
Sbjct: 508 VQIYNMVDTRKDGTLDRKSFIVGMWLVDQCLYGRKLTNELDQRVWNSVDGYVLGTINVKP 567
Query: 615 XXXXXX----------XKKMLRKELKTIKKDLK 637
K +R+ELK IK+DL+
Sbjct: 568 ATSDHYHNANNPLDKPSKLSVRQELKNIKRDLR 600
>YKR019c [TU] KOG0998 Synaptic vesicle protein EHS-1 and related EH domain
proteins
Length = 615
Score = 179 bits (454), Expect = 1e-44
Identities = 91/209 (43%), Positives = 121/209 (57%), Gaps = 37/209 (17%)
Query: 429 HRAMVRSHKRKSFNEDKPWKSHVDIGYISERERKRYEGIWVTNRNSYLELLPWWNQPLXX 488
HR + R+ RK FNEDKPWKSH DI ++++ ERKRYE +WV+NR+ +L LL WW
Sbjct: 430 HRPIHRTRDRK-FNEDKPWKSHTDITFVTDNERKRYESMWVSNRHRHLNLLSWWPSITGD 488
Query: 489 XXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXXXXXXXDADIPEDGLMLNLIVMEIWSRSN 548
+PEDGL+L +IV +IW RSN
Sbjct: 489 SGAINT----------------------------------LPEDGLILGIIVRDIWKRSN 514
Query: 549 LSNQLLGQIYDKVDTRHDGTLNRQSFLTGMWLVDQCLYGRKLPKQIDQRVWDSVDKFVIS 608
L N LL +IY KVDTR DGTL+R+SF+ GMWLVDQCLYGRKLP ++Q VWDSVD++ +
Sbjct: 515 LPNSLLAEIYTKVDTRKDGTLDRKSFIVGMWLVDQCLYGRKLPNVVEQCVWDSVDRYAST 574
Query: 609 --IXXXXXXXXXXXXKKMLRKELKTIKKD 635
+ +K +++E+K IKK+
Sbjct: 575 TVVPVSTLKAMAKQKRKQMKEEIKNIKKE 603
>SPAC1687.09 [TU] KOG0998 Synaptic vesicle protein EHS-1 and related EH domain
proteins
Length = 1379
Score = 78.2 bits (191), Expect = 4e-14
Identities = 58/218 (26%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 430 RAMVRSHKRKSFNEDKPWKSHVDIG----------YISERERKRYEGIWVTNRNSYLELL 479
R + HK +D +KS ++ +I E RK YEG+W N+ YL
Sbjct: 1191 RVPQKKHKHFYHRDDGKYKSGTNLRKSETVDLPQFFIDENRRKLYEGLWAANKG-YLLSK 1249
Query: 480 PWWNQPLXXXXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXXXXXXXDADIPEDGLMLNLI 539
+++P + L+ N++
Sbjct: 1250 SEYSKP----------------------------------------------NDLICNIV 1263
Query: 540 VMEIWSRSNLSNQLLGQIYDKVDTRHDGTLNRQSFLTGMWLVDQCLYGRKLPKQIDQRVW 599
V E+WSRS +L +IYD VD H G L R F+ GM+L+DQ L GRKLP ++ VW
Sbjct: 1264 VRELWSRSGAPTSVLAKIYDLVDRHHTGVLGRDEFIVGMFLIDQYLKGRKLPLKVPDSVW 1323
Query: 600 DSVDKFVISIXXXXXXXXXXXXKKMLRKELKTIKKDLK 637
S + + KK K+ K +K LK
Sbjct: 1324 LSSKRMGDMLWRLEKLQKKTDNKKPFFKKKKKKRKHLK 1361
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,522,943
Number of Sequences: 60738
Number of extensions: 948436
Number of successful extensions: 1516
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 8
length of query: 638
length of database: 30,389,216
effective HSP length: 113
effective length of query: 525
effective length of database: 23,525,822
effective search space: 12351056550
effective search space used: 12351056550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)