ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0669 good J KOG3203 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L13
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0669 211891 212355 155
(155 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR150w [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13 242 2e-64
SPBC16G5.04 [J] KOG3203 Mitochondrial/chloroplast ribosomal prot... 165 3e-41
Hs14165270 [J] KOG3203 Mitochondrial/chloroplast ribosomal prote... 90 1e-18
At1g78630 [J] KOG3203 Mitochondrial/chloroplast ribosomal protei... 87 9e-18
At3g01790 [J] KOG3203 Mitochondrial/chloroplast ribosomal protei... 77 7e-15
CE28913 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13 68 6e-12
7298499 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13 49 2e-06
>YOR150w [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 163
Score = 242 bits (617), Expect = 2e-64
Identities = 109/155 (70%), Positives = 132/155 (84%)
Query: 1 MSQKVGHTGLAFARMWHHVDISKDKRTLGRVASQVALALMGKHKPVYHPSADCGDYVVVT 60
MSQK+GH+GLAFAR+WHHVD+++DKRTLGR+AS +A+ L+G+HKPVYHPS DCGDYVVVT
Sbjct: 1 MSQKIGHSGLAFARLWHHVDVARDKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVT 60
Query: 61 NCQALRVTGNKMTQKTYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRK 120
NCQ +RVTG K QKTYWSH+ RPG LKL TM ++++KG+ E+LKKAVSGMLPKNKLRK
Sbjct: 61 NCQKIRVTGKKFEQKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRK 120
Query: 121 IRLARLKIFDGSEHPYKSNITAFADQQLELQHQKK 155
RL RLK+FDGSE+PYK NITAFA +Q + K
Sbjct: 121 QRLDRLKVFDGSENPYKQNITAFAHEQSSIPEPLK 155
>SPBC16G5.04 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 157
Score = 165 bits (417), Expect = 3e-41
Identities = 76/140 (54%), Positives = 104/140 (74%), Gaps = 2/140 (1%)
Query: 1 MSQKVGHTGLAFARMWHHVDISKDKRTLGRVASQVALALMGKHKPVYHPSADCGDYVVVT 60
MS G T LA+A++WHHV S LGR+ASQ+A LMGKHKP+YHP+ADCGD VVVT
Sbjct: 1 MSTLNGQTALAYAKVWHHV--SAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVT 58
Query: 61 NCQALRVTGNKMTQKTYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRK 120
+C + ++G K+ Y+SH+ +PG LK TME+M + +G+ ++L++AV GMLP+NKL
Sbjct: 59 DCSEIGISGRKLENHKYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWD 118
Query: 121 IRLARLKIFDGSEHPYKSNI 140
R+ RL I+DG+EHPYK+NI
Sbjct: 119 RRMKRLYIYDGAEHPYKANI 138
>Hs14165270 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 178
Score = 90.1 bits (222), Expect = 1e-18
Identities = 46/118 (38%), Positives = 70/118 (58%), Gaps = 3/118 (2%)
Query: 12 FARMWHHVDISKDKRTLGRVASQVALALMGKHKPVYHPSADCGDYVVVTNCQALRVTGNK 71
FAR+W+ +D + G++A+ ++ L G HKPVYH +DCGD+VV+ N + + +GNK
Sbjct: 14 FARIWYLLD--GKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNK 71
Query: 72 MTQKTYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRKIRLARLKIF 129
QK Y SHT PG + T + + ++K A+ GMLPKN R+ + RL +F
Sbjct: 72 WEQKVYSSHTGYPGGFRQVTAAQLHLRDPVA-IVKLAIYGMLPKNLHRRTMMERLHLF 128
>At1g78630 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 241
Score = 87.0 bits (214), Expect = 9e-18
Identities = 47/139 (33%), Positives = 78/139 (55%), Gaps = 6/139 (4%)
Query: 16 WHHVDISKDKRTLGRVASQVALALMGKHKPVYHPSADCGDYVVVTNCQALRVTGNKMTQK 75
W VD + + LGR+AS +A + GK+ Y PS D G +V+V N + + V+G K QK
Sbjct: 105 WFVVDATD--KILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQK 162
Query: 76 TYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRKIRLARLKIFDGSEHP 135
Y H+ RPG + + T D + + +++ AV GMLPK +L + LK++ G +HP
Sbjct: 163 LYRRHSGRPGGMTVETF-DQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 221
Query: 136 YKSN---ITAFADQQLELQ 151
+++ D++++LQ
Sbjct: 222 HEAQKPLDLPIRDKRIQLQ 240
>At3g01790 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 137
Score = 77.4 bits (189), Expect = 7e-15
Identities = 41/96 (42%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Query: 26 RTLGRVASQVALALMGKHKPVYHPSADCGDYVVVTNCQALRVTGNKMTQKTYWSHTSRPG 85
+ LGR+ASQ++ L K KP Y P+ D GD +V N + + TG K+T K Y HT G
Sbjct: 40 QVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFYRWHTGYIG 99
Query: 86 SLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRKI 121
LK +++D ++ K +EV++KAV MLP N LR +
Sbjct: 100 HLKERSLKDQMA-KDPTEVIRKAVWRMLPSNNLRDV 134
>CE28913 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 205
Score = 67.8 bits (164), Expect = 6e-12
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 10 LAFARMWHHVDISKDKRTLGRVASQVALALMGKHKPVYHPSADCGDYVVVTNCQALRVTG 69
L F+R WH +D ++ L + +VA L GKHKP++HP DCGD+VVVTNC+ + +
Sbjct: 17 LQFSRQWHVIDANQQDAEL--LGDKVARYLAGKHKPIFHPETDCGDHVVVTNCKDIAMHA 74
Query: 70 NKMTQKTYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSGMLPKNKLRKIRLARLKIF 129
Y + P S K I + + +V L N LR+ + RL +F
Sbjct: 75 FDWKHTIYKFNMEYPKS-KADIPAWQIHDYDQCRIAFLSVYRSLGNNLLRRRHIQRLHLF 133
Query: 130 DGSE 133
E
Sbjct: 134 PDEE 137
>7298499 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 141
Score = 49.3 bits (116), Expect = 2e-06
Identities = 26/84 (30%), Positives = 45/84 (52%), Gaps = 1/84 (1%)
Query: 52 DCGDYVVVTNCQALRVTGNKMTQKTYWSHTSRPGSLKLTTMEDMISNKGYSEVLKKAVSG 111
DCGD+VV+ N + + + G++ ++ Y+ HT PG T+ + K + V+KKAV
Sbjct: 14 DCGDHVVLINTREIALPGDEWVKRVYFHHTGYPGGAS-WTLAWQLHEKDPTMVMKKAVYN 72
Query: 112 MLPKNKLRKIRLARLKIFDGSEHP 135
+ N R+ + RL +F + P
Sbjct: 73 SMRGNLQRRHTMQRLHLFADDQVP 96
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,707,411
Number of Sequences: 60738
Number of extensions: 315250
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 7
length of query: 155
length of database: 30,389,216
effective HSP length: 97
effective length of query: 58
effective length of database: 24,497,630
effective search space: 1420862540
effective search space used: 1420862540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)