ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV0687   suspect: LH   U     KOG4072  Intracellular trafficking, secretion, and vesicular transport  Signal peptidase complex, subunit SPC25

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0687  217940  218446 169  
         (169 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE20214 [U] KOG4072 Signal peptidase complex subunit SPC25             50   1e-06

>CE20214 [U] KOG4072 Signal peptidase complex subunit SPC25
          Length = 180

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 3   KPINVYAVPEVRKALDEALPEIFS-RLGYTQTFKLIDTKLILGYSLVVFAAASFLLDKKL 61
           K +N +  P V+ ALDE + +I + ++G+T++  L++ +L++ +  V F+A +   D   
Sbjct: 7   KVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACGYDYYE 66

Query: 62  PWEQSKPYQQVLVALYMILSAVQLWFNKFVEKGTVYQGV----KKNDTVSVGAKYKKHSH 117
           P+ +SK    V    Y I   +   +  +VEK  +Y+      K++   +  ++ K H  
Sbjct: 67  PFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEIKAHDD 126

Query: 118 EFHVSITNRK-GRS 130
           ++ +S   +K GRS
Sbjct: 127 KYTLSAEFKKEGRS 140


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,460,236
Number of Sequences: 60738
Number of extensions: 358383
Number of successful extensions: 919
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 1
length of query: 169
length of database: 30,389,216
effective HSP length: 99
effective length of query: 70
effective length of database: 24,376,154
effective search space: 1706330780
effective search space used: 1706330780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)