ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0718 good A KOG2184 RNA processing and modification Tuftelin-interacting protein TIP39, contains G-patch domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0718 233166 231166 -667
(667 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR424w [A] KOG2184 Tuftelin-interacting protein TIP39 contains ... 204 4e-52
At3g09850 [A] KOG2184 Tuftelin-interacting protein TIP39 contain... 61 6e-09
SPAC1486.03c [A] KOG2184 Tuftelin-interacting protein TIP39 cont... 59 3e-08
Hs8922313 [R] KOG0154 RNA-binding protein RBM5 and related prote... 54 6e-07
Hs20127479 [R] KOG0154 RNA-binding protein RBM5 and related prot... 53 1e-06
At1g17070 [A] KOG2184 Tuftelin-interacting protein TIP39 contain... 52 3e-06
At2g42330 [A] KOG2184 Tuftelin-interacting protein TIP39 contain... 52 4e-06
>YLR424w [A] KOG2184 Tuftelin-interacting protein TIP39 contains G-patch
domain
Length = 708
Score = 204 bits (519), Expect = 4e-52
Identities = 170/672 (25%), Positives = 324/672 (47%), Gaps = 66/672 (9%)
Query: 52 SNDGLKSD--------QMLKTYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRP-KG 102
+ND LK+ ++ KTYG+GAKLLS MGY G+GLG+DG GI PIET +RP
Sbjct: 41 TNDALKTSSGNAPTISKLTKTYGIGAKLLSSMGYVAGKGLGKDGSGITTPIETQSRPMHN 100
Query: 103 VGLGMLSAVH-DRXXXXXXXXXXXXXXXXXXXXTVEFKTRRATQLEKLIQN-------IS 154
GLGM S + V+F L + + N +
Sbjct: 101 AGLGMFSNTNSSNYHSENEDYLSSEDEVVEGIEQVKFNKTSTEVLGEALLNDSGDMTIVR 160
Query: 155 LLAELK---IELPDTVTRTING-SELHEEEISSLNEIANKLLQLHSDIDRIQVGLEKAQL 210
L EL+ ++LP+++ + ++ + + + + + EI +LL + ++ I+ ++
Sbjct: 161 TLRELRLAGVQLPESILKELDPLNAVPKPKKDVVVEILQELLGIEKSLEAIRQRTSPLEV 220
Query: 211 DDERKVHQEERLQSVLEKVKEKQLSQPSLEDQITECLEINDDDILDKLCTMFLLKEL--N 268
++ + +ERL S LE + SL D+I L+++DD+++D+L + L KEL
Sbjct: 221 -QVKEYYGQERLLSELEVTLRDESKHVSLYDKIGAILKLSDDELIDRLTSCLLRKELLIE 279
Query: 269 RGINTADMQVEKLNHLRAAIRFLSYRME-SGYILNETQSSIYRLVYQPL-CYWLDSNTGY 326
++ + + L+ L I L+YRM+ + LN TQ++I++++Y L +W +
Sbjct: 280 FDLDHLEKPNDILDELTQIIELLAYRMDTTSKFLNRTQTTIFKVIYPKLKKFWEGFDMTK 339
Query: 327 SRMLRQIT--VQYLPIIDFISCREHFLSRYIMPALEIQLSPQFLSDEF-----MVTYGEL 379
S++ IT + + ++ FI C+EH + ++ P L +L L DE + +
Sbjct: 340 SKIDSAITLLLDFQQVLSFIGCKEHIMEEFVYPKLLQELDNWELHDEVDHVSPRIWVLDF 399
Query: 380 HLILGERDLKSLKALILLEFEQFLKNW--EPSMTVNPQNVILLKEAVGDSKFYELVNRYW 437
+++ ++ ++ I +F + KNW S + ++I +KE + + ++Y+++ + +
Sbjct: 400 MVLIDDKIKDTIVDKIEAKFFAYCKNWYHRESFCITNSDIIFIKELICERRYYKILCKEF 459
Query: 438 LSSFAD-YFDSHFHLIDEFTD-------AENEIYISAIIDVLKEYNDFFDLPTRNKVYKV 489
L F D ++ H I E D E + + L+ Y +F + +
Sbjct: 460 LPKFLDELWERHNDPIYELEDWKEKQEWKEKDSGFFYFMKKLRSYTHYFHPKQYELMMRG 519
Query: 490 INNSLLKTLFQWFVFKSSTFRYEASSWLKYMINRIYTASSLDNVE--EVKKLLDF----- 542
N++ K L+QW ++ + +++ WL +++N ++ S +E E++K +
Sbjct: 520 TFNNINKILYQWHLYSTVEDLHKSKWWLNWLMNTVFEHSLPTEIELSEIRKSYNIFAMSH 579
Query: 543 ---VDHPSTLSDHDERLSLKSLIES-----TGQSESR-FNAFNNTPMTKISTTFKTVVET 593
+D + D D R L++L+E+ QSE N P+ K+S++FK VVE
Sbjct: 580 RYHLDKSTLDEDFDLRQGLRNLMETQVIDDISQSEQEPTYTVQNIPLGKVSSSFKDVVED 639
Query: 594 FCHDHGLSFRKTDNDTASINIFGKEK--VAPVFTVSKYNNKRVNVVLMGDILWLQRRNRT 651
+C + G K N + +G+++ + P+F + + K++ V L DILW++ + T
Sbjct: 640 YCLEKGYLISKIPNRYTQLP-YGRDQDCIVPLFEI-RNGKKKMEVALKHDILWVEDSSGT 697
Query: 652 ESRFEPIFLYQL 663
F+PI+L+ L
Sbjct: 698 ---FKPIYLWAL 706
>At3g09850 [A] KOG2184 Tuftelin-interacting protein TIP39 contains G-patch
domain
Length = 781
Score = 60.8 bits (146), Expect = 6e-09
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 64 TYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLGM 107
T G G+K+++KMG+ G GLG+DGKGI PIE V RPK +GLG+
Sbjct: 635 TRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRPKSLGLGL 678
Score = 52.4 bits (124), Expect = 2e-06
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 64 TYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLG 106
T G G++++++MG+ +G GLGR+ +GIVNP+ V RP+ G+G
Sbjct: 736 TTGFGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRPRARGIG 778
>SPAC1486.03c [A] KOG2184 Tuftelin-interacting protein TIP39 contains G-patch
domain
Length = 797
Score = 58.5 bits (140), Expect = 3e-08
Identities = 28/51 (54%), Positives = 37/51 (71%), Gaps = 3/51 (5%)
Query: 64 TYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLGMLSAVHDR 114
T G GAK+L KMGYKQG+GLG + +GI P+++ RP+ VGLG AV +R
Sbjct: 115 TTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLG---AVRER 162
>Hs8922313 [R] KOG0154 RNA-binding protein RBM5 and related proteins contain
G-patch and RRM domains
Length = 528
Score = 54.3 bits (129), Expect = 6e-07
Identities = 23/40 (57%), Positives = 30/40 (74%)
Query: 67 MGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLG 106
+G ++L MG+ G GLGRDGKGI PI+ + RPKG+GLG
Sbjct: 470 IGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGLG 509
>Hs20127479 [R] KOG0154 RNA-binding protein RBM5 and related proteins contain
G-patch and RRM domains
Length = 930
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 6/55 (10%)
Query: 52 SNDGLKSDQMLKTYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLG 106
+ DGL SD + G+++L MG+K+G GLGR +GIV PIE TR +G GLG
Sbjct: 852 TRDGLGSDNI------GSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG 900
>At1g17070 [A] KOG2184 Tuftelin-interacting protein TIP39 contains G-patch
domain
Length = 849
Score = 52.0 bits (123), Expect = 3e-06
Identities = 26/43 (60%), Positives = 32/43 (73%), Gaps = 1/43 (2%)
Query: 64 TYGMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLG 106
T G+G KLL KMGYK G GLG++ +GIV PIE RPK +G+G
Sbjct: 200 TKGIGMKLLEKMGYKGG-GLGKNQQGIVAPIEAQLRPKNMGMG 241
>At2g42330 [A] KOG2184 Tuftelin-interacting protein TIP39 contains G-patch
domain
Length = 752
Score = 51.6 bits (122), Expect = 4e-06
Identities = 25/41 (60%), Positives = 31/41 (74%), Gaps = 1/41 (2%)
Query: 66 GMGAKLLSKMGYKQGEGLGRDGKGIVNPIETVTRPKGVGLG 106
G+G KLL KMGYK G GLG++ +GIV PIE RPK +G+G
Sbjct: 105 GIGMKLLEKMGYK-GRGLGKNQQGIVAPIEVQLRPKNMGMG 144
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,364,770
Number of Sequences: 60738
Number of extensions: 1505717
Number of successful extensions: 5520
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5505
Number of HSP's gapped (non-prelim): 9
length of query: 667
length of database: 30,389,216
effective HSP length: 113
effective length of query: 554
effective length of database: 23,525,822
effective search space: 13033305388
effective search space used: 13033305388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)