ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0755 suspect: LH R KOG3037 General function prediction only Cell membrane glycoprotein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0755 246326 246943 206
(206 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YLR421c [R] KOG3037 Cell membrane glycoprotein 134 1e-31
>YLR421c [R] KOG3037 Cell membrane glycoprotein
Length = 156
Score = 134 bits (336), Expect = 1e-31
Identities = 59/108 (54%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
Query: 46 ISFRAGKCDYDEESKICTPKQMKGEIQIKPSEEAQ-GFFDFQWSTKDRVSGSAVEPIEFI 104
I FRAG C+Y+E+S++CTP ++GEI+IKP+EE + GF+DF+W ++ G ++PI I
Sbjct: 8 IKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGRELDPISLI 67
Query: 105 LIPGETKWIDIKSAKNGRVLCLLFSTGEKWFFWLQEKHQGNESLNEWS 152
LIPGET W+ IKS+K+GR+ L+FS+ E++FFWLQEK+ GN LNE S
Sbjct: 68 LIPGETMWVPIKSSKSGRIFALVFSSNERYFFWLQEKNSGNLPLNELS 115
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,213,686
Number of Sequences: 60738
Number of extensions: 412587
Number of successful extensions: 853
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 1
length of query: 206
length of database: 30,389,216
effective HSP length: 101
effective length of query: 105
effective length of database: 24,254,678
effective search space: 2546741190
effective search space used: 2546741190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)