ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0820 good J KOG1715 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0820 269799 269290 -170
(170 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL068w [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12 134 5e-32
SPCC4B3.09c [J] KOG1715 Mitochondrial/chloroplast ribosomal prot... 107 6e-24
7295020 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12 83 2e-16
CE16564 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12 75 4e-14
At4g36420 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 75 6e-14
Hs4506673 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 74 1e-13
At1g70190 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 67 2e-11
At2g03130 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 62 5e-10
At4g37660 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 55 5e-08
At3g06040 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 53 2e-07
At3g27830 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 52 3e-07
At3g27850 [J] KOG1715 Mitochondrial/chloroplast ribosomal protei... 51 7e-07
>YGL068w [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 194
Score = 134 bits (338), Expect = 5e-32
Identities = 85/186 (45%), Positives = 103/186 (54%), Gaps = 22/186 (11%)
Query: 7 RSSGVFARNSCRLGLV-------RYQSTAGTSTP----AAAVDPKISQIVQDISKLTLLE 55
RSS ++ + L+ R+ ST T+ VDPKIS+IVQDIS+LTLLE
Sbjct: 9 RSSSIWMKTRVTPALISPITITTRFNSTTTTAPSHKDDVRPVDPKISKIVQDISQLTLLE 68
Query: 56 TSALIQELKTQLNIPDISFPXXXXXXXXXXXXXXXXXXXXXXXXX-----------TIFS 104
TS+LI ELKT LNIP+IS P T+F+
Sbjct: 69 TSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFT 128
Query: 105 IKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXXXXXXXXXXXLEGLG 164
+KL+SFD K+K K+IKEVK LLGLSLVEAKKFVE+APKVLKEN LE LG
Sbjct: 129 VKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLG 188
Query: 165 AKIVLE 170
AK+ LE
Sbjct: 189 AKVSLE 194
>SPCC4B3.09c [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 206
Score = 107 bits (268), Expect = 6e-24
Identities = 62/131 (47%), Positives = 79/131 (59%)
Query: 40 KISQIVQDISKLTLLETSALIQELKTQLNIPDISFPXXXXXXXXXXXXXXXXXXXXXXXX 99
+I ++V IS L+LLETS L+++LK +LNI +I+
Sbjct: 76 QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135
Query: 100 XTIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXXXXXXXXXXX 159
T +++KLESFDA SK K+IKEVK+LLGLSLV+AKKFVESAPKVLKEN
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIKSK 195
Query: 160 LEGLGAKIVLE 170
LE L K+VLE
Sbjct: 196 LEKLSCKVVLE 206
>7295020 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 182
Score = 83.2 bits (204), Expect = 2e-16
Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 38 DPKISQIVQDISKLTLLETSALIQELKTQLNIPDISFPXXXXXXXXXXXXXXXXXXXXXX 97
+PK+ IV +I+ L LLE + L LK +LN+P+ +F
Sbjct: 49 NPKLDSIVNNIAALNLLEVAELSTLLKQKLNLPETAFAPQFAAGPARAAPAEDEEEAAPK 108
Query: 98 XXXTIFSIKLESFDAKSKPKIIKEVKNLL-GLSLVEAKKFVESAPKVLKENXXXXXXXXX 156
T F +KL FD K K +IKEVKNLL G++LV+AKKFVESAP ++KE+
Sbjct: 109 KVQTSFKVKLVKFDEKQKVALIKEVKNLLEGMNLVQAKKFVESAPTIVKEDIPKEEAEKL 168
Query: 157 XXXLEGLGAKIVLE 170
L GA I +E
Sbjct: 169 KEALSKAGAIIEIE 182
>CE16564 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 173
Score = 75.1 bits (183), Expect = 4e-14
Identities = 59/168 (35%), Positives = 84/168 (49%), Gaps = 8/168 (4%)
Query: 2 LRQVVRSSGVFARNSCRLGL-VRYQSTAGTSTPAAAVDPKISQIVQDISKLTLLETSALI 60
+ +V+RSS A+ S GL + S A + A+ K+S +V++I+ L+LL+ S L
Sbjct: 9 ISKVLRSS---AKYSQAAGLPLNEGSPAPLPSEDRAISAKVSSLVEEIANLSLLDVSDLN 65
Query: 61 QELKTQLNIPDISFPXXXXXXXXXXXXXXXXXXXXXXXXXTIFSIKLESFDAKSKPKIIK 120
LK +LNIPD P T F++KL FD K IIK
Sbjct: 66 WALKKRLNIPD--QPLMAAAAAAPAAQAEAEAASDVPQKMT-FTVKLTKFDDTKKIAIIK 122
Query: 121 EVKNLL-GLSLVEAKKFVESAPKVLKENXXXXXXXXXXXXLEGLGAKI 167
E++N + GL+LV+AKKFVE+AP +KE+ LE GA I
Sbjct: 123 EIRNAIPGLNLVQAKKFVETAPVNVKEDLGKAEADELKAILEKAGATI 170
>At4g36420 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 179
Score = 74.7 bits (182), Expect = 6e-14
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 31 STPAAAVDPKISQIVQDISKLTLLETSALIQELKTQLNIPDIS-----FPXXXXXXXXXX 85
S+PA + +S+IV ++S LTLLET L + L+ +LNI ++ P
Sbjct: 36 SSPATQSE-NVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94
Query: 86 XXXXXXXXXXXXXXXTIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLK 145
T F + L+++DA SK K+IKEV+ + L L EAK VE AP +LK
Sbjct: 95 KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154
Query: 146 ENXXXXXXXXXXXXLEGLGAKIVLE 170
+ L+ +GAK+ +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179
>Hs4506673 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 198
Score = 73.6 bits (179), Expect = 1e-13
Identities = 53/158 (33%), Positives = 73/158 (45%), Gaps = 7/158 (4%)
Query: 20 GLVRYQSTAGTSTPAAAVD--PKISQIVQDISKLTLLETSALIQELKTQLNIPDISF--- 74
G R ++ AG A + PKI Q+VQDI+ LTLLE S L + LK L I D+
Sbjct: 41 GHQRCEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPM 100
Query: 75 -PXXXXXXXXXXXXXXXXXXXXXXXXXTIFSIKLESFDAKSKPKIIKEVKNLL-GLSLVE 132
T F+++L K K+IKE+KN + G++LV+
Sbjct: 101 GGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQ 160
Query: 133 AKKFVESAPKVLKENXXXXXXXXXXXXLEGLGAKIVLE 170
AKK VES P+ +K N LE +G +VLE
Sbjct: 161 AKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
>At1g70190 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 208
Score = 66.6 bits (161), Expect = 2e-11
Identities = 46/139 (33%), Positives = 64/139 (45%), Gaps = 8/139 (5%)
Query: 40 KISQIVQDISKLTLLETSAL---IQELKTQLNIPDISFPXXXXXXXXXXXX-----XXXX 91
++ ++V +IS LTLLE S L I + K +P ++
Sbjct: 70 RVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSG 129
Query: 92 XXXXXXXXXTIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXXX 151
T+F IKLESF+A +K KIIKE+++ L L EAK VE P +LK
Sbjct: 130 VSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKE 189
Query: 152 XXXXXXXXLEGLGAKIVLE 170
L+ LGAK+VLE
Sbjct: 190 EGEKILEKLKALGAKVVLE 208
>At2g03130 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 110
Score = 61.6 bits (148), Expect = 5e-10
Identities = 32/70 (45%), Positives = 43/70 (60%)
Query: 101 TIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXXXXXXXXXXXL 160
T+F +KLESF+A++K KIIKEV+ ++G+ L EA K V AP VLK L
Sbjct: 22 TVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVEKL 81
Query: 161 EGLGAKIVLE 170
LGA+ VL+
Sbjct: 82 NALGAEAVLQ 91
>At4g37660 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 167
Score = 55.1 bits (131), Expect = 5e-08
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 9 SGVFARNSCRLGLVRYQSTAGTSTP--AAAVDP-----KISQIVQDISKLTLLETS--AL 59
SG+F+R+ LG + + ++T A P K+ +I D+ KL +E +L
Sbjct: 6 SGIFSRS---LGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSL 62
Query: 60 IQELKTQLNIPDISFPXXXXXXXXXXXXXXXXXXXXXXXXXTIFSIKLESFDAKSKPKII 119
+ K LN T F +KLE F+A SK K+I
Sbjct: 63 LFSHKIGLN------RYGSAVAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVI 116
Query: 120 KEVKNLLGLSLVEAKKFVESAPKVLKENXXXXXXXXXXXXLEGLGAKIVLE 170
KE++ L L EAK VE AP ++K L+ +GA + LE
Sbjct: 117 KEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167
>At3g06040 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 186
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 101 TIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXXXXXXXXXXXL 160
T F +KLE F+A K K+IKEV+ L L EAK+ VE P +LK+ +
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKI 176
Query: 161 EGLGAKIVLE 170
+ +G V+E
Sbjct: 177 KAVGGIAVME 186
>At3g27830 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 191
Score = 52.4 bits (124), Expect = 3e-07
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 33 PAAAVDP--KISQIVQDISKLTLLETSALIQELKTQLNIPDISFPXXXXXXXXXXXXXXX 90
P AAV+ KI +I +IS LTL E L+ L+ + + +S
Sbjct: 56 PIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSL----APAAAAVAAPAD 111
Query: 91 XXXXXXXXXXTIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXX 150
T F + + + S+ +IK V+ L L+L EAK+ +E PK KE
Sbjct: 112 GGAAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITK 171
Query: 151 XXXXXXXXXLEGLGAKI 167
LE GAK+
Sbjct: 172 DEAEEAKKTLEEAGAKV 188
>At3g27850 [J] KOG1715 Mitochondrial/chloroplast ribosomal protein L12
Length = 187
Score = 51.2 bits (121), Expect = 7e-07
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 33 PAAAVDP--KISQIVQDISKLTLLETSALIQELKTQLNIPDISFPXXXXXXXXXXXXXXX 90
P +AV+ KI +I +IS LTL E L+ L+ + + +S
Sbjct: 52 PISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSL----APAAAAVAAPAD 107
Query: 91 XXXXXXXXXXTIFSIKLESFDAKSKPKIIKEVKNLLGLSLVEAKKFVESAPKVLKENXXX 150
T F + + + S+ +IK V+ L L+L EAK+ +E PK KE
Sbjct: 108 GGAAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITK 167
Query: 151 XXXXXXXXXLEGLGAKI 167
LE GAK+
Sbjct: 168 DEAEEAKKTLEEAGAKV 184
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,098,433
Number of Sequences: 60738
Number of extensions: 158781
Number of successful extensions: 518
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 12
length of query: 170
length of database: 30,389,216
effective HSP length: 99
effective length of query: 71
effective length of database: 24,376,154
effective search space: 1730706934
effective search space used: 1730706934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)