ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0821 good K KOG2691 Transcription RNA polymerase II subunit 9
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0821 270311 270676 122
(122 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL070c [K] KOG2691 RNA polymerase II subunit 9 238 1e-63
SPAPYUG7.04c [K] KOG2691 RNA polymerase II subunit 9 135 7e-33
7299869 [K] KOG2691 RNA polymerase II subunit 9 118 1e-27
Hs5453930 [K] KOG2691 RNA polymerase II subunit 9 113 5e-26
At3g16980 [K] KOG2691 RNA polymerase II subunit 9 108 1e-24
CE26319 [K] KOG2691 RNA polymerase II subunit 9 105 1e-23
ECU11g1400 [K] KOG2691 RNA polymerase II subunit 9 83 5e-17
7302348 [K] KOG2906 RNA polymerase III subunit C11 57 4e-09
Hs7706499 [K] KOG2906 RNA polymerase III subunit C11 54 5e-08
SPAC22A12.05 [K] KOG2906 RNA polymerase III subunit C11 52 2e-07
YDR045c [K] KOG2906 RNA polymerase III subunit C11 47 4e-06
>YGL070c [K] KOG2691 RNA polymerase II subunit 9
Length = 122
Score = 238 bits (606), Expect = 1e-63
Identities = 110/122 (90%), Positives = 116/122 (94%)
Query: 1 MTTFRFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQ 60
MTTFRFCRDCNNMLYPREDKE ++LLFECRTC YVEEAG+PLVYRHEL TNIGETAGVVQ
Sbjct: 1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ 60
Query: 61 DIGSDPTLPRSDKECPKCHSRENVFFQSQQRRKDTSMVLFYVCLHCSHIFTSDKKNKRQT 120
DIGSDPTLPRSD+ECPKCHSRENVFFQSQQRRKDTSMVLF+VCL CSHIFTSD+KNKR
Sbjct: 61 DIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ 120
Query: 121 FS 122
FS
Sbjct: 121 FS 122
>SPAPYUG7.04c [K] KOG2691 RNA polymerase II subunit 9
Length = 113
Score = 135 bits (341), Expect = 7e-33
Identities = 61/110 (55%), Positives = 73/110 (65%)
Query: 1 MTTFRFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQ 60
M+ F++C +CNNMLYPREDK L CR C Y E A T VYRHEL+++ E V
Sbjct: 1 MSNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSH 60
Query: 61 DIGSDPTLPRSDKECPKCHSRENVFFQSQQRRKDTSMVLFYVCLHCSHIF 110
D +DPTLPRSDKECP+CH E VF+Q+ RR DT M L YVC+HC F
Sbjct: 61 DASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110
>7299869 [K] KOG2691 RNA polymerase II subunit 9
Length = 129
Score = 118 bits (295), Expect = 1e-27
Identities = 56/110 (50%), Positives = 75/110 (67%), Gaps = 3/110 (2%)
Query: 5 RFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQDIGS 64
RFC++CNNMLYP+EDKE LL+ CR C Y +EA + +Y +++ I E +V D+ S
Sbjct: 19 RFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVIS 78
Query: 65 DPTLPRS-DKECPKCHSRENVFFQSQQRRKDTSMVLFYVCL--HCSHIFT 111
DPTLPR+ D CPKC RE VFFQ+Q RR + M L+YVC +C+H +T
Sbjct: 79 DPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWT 128
>Hs5453930 [K] KOG2691 RNA polymerase II subunit 9
Length = 125
Score = 113 bits (282), Expect = 5e-26
Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Query: 5 RFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQDIGS 64
RFC++CNNMLYP+EDKE LL+ CR C Y +EA +Y +++ + E ++ D+
Sbjct: 15 RFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQ 74
Query: 65 DPTLPRS-DKECPKCHSRENVFFQSQQRRKDTSMVLFYVCL--HCSHIFT 111
DPTLPR+ D C KC +E VFFQS R + +M L+YVC HC H +T
Sbjct: 75 DPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWT 124
>At3g16980 [K] KOG2691 RNA polymerase II subunit 9
Length = 114
Score = 108 bits (270), Expect = 1e-24
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 1 MTTFRFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQ 60
M+T +FCR+CNN+LYP+EDKE LL+ CR C + E A VYR+E+ ++ E ++
Sbjct: 1 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60
Query: 61 DIGSDPTLPRSDK-ECPKCHSRENVFFQSQQRRKDTSMVLFYVCL--HCSH 108
D+ SDPTLPR+ C KC RE VFFQ+ R ++ M LF+VC +C H
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEE-GMTLFFVCCNPNCGH 110
>CE26319 [K] KOG2691 RNA polymerase II subunit 9
Length = 167
Score = 105 bits (261), Expect = 1e-23
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 5 RFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQDIGS 64
+FC +CNNMLYPREDKE+ L++ CR C + E A P +Y ++L I E +V DI
Sbjct: 57 KFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGDIIH 116
Query: 65 DPTLPRSDK-ECPKCHSRENVFFQSQQRRKDTSMVLFYVCL--HCSHIFT 111
DPTLP++++ +CP C + VFFQ+Q ++ + M L+YVC C H +T
Sbjct: 117 DPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWT 166
>ECU11g1400 [K] KOG2691 RNA polymerase II subunit 9
Length = 108
Score = 83.2 bits (204), Expect = 5e-17
Identities = 35/107 (32%), Positives = 59/107 (54%), Gaps = 2/107 (1%)
Query: 5 RFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQDIGS 64
RFC++CNN+LYP+ED T L C+ C +++EA + +Y + +D+
Sbjct: 4 RFCKECNNLLYPKEDDNT--LFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQ 61
Query: 65 DPTLPRSDKECPKCHSRENVFFQSQQRRKDTSMVLFYVCLHCSHIFT 111
DPTLP C C + ++FQ + +D ++ +FY+C C H++T
Sbjct: 62 DPTLPSVKINCGNCGFNKGLYFQPRGGEEDVALSIFYLCCRCYHLWT 108
>7302348 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 57.0 bits (136), Expect = 4e-09
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 6 FCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTN----IGETAGVVQD 61
FC C N+L ED H+ F C TCPY+ + R ++ T + E V+
Sbjct: 4 FCPSCGNILIIEEDTNCHR--FTCNTCPYISKI------RRKISTKTFPRLKEVDHVLGG 55
Query: 62 IGSDPTLPRSDKECPKCHSRENVFFQSQQRRKDTSMVLFYVCLHCSH 108
+ + +D ECP C + F Q Q R D M FY C C+H
Sbjct: 56 KAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKC--CNH 100
>Hs7706499 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 53.5 bits (127), Expect = 5e-08
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 6 FCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHELKTNIGETAGVVQDIGSD 65
FC C N L E + H+ F C TCPYV + R K + E V+ +
Sbjct: 4 FCPGCGNGLIVEEGQRCHR--FACNTCPYVHNITRKVTNRKYPK--LKEVDDVLGGAAAW 59
Query: 66 PTLPRSDKECPKCHSRENVFFQSQQRRKDTSMVLFYVCLH--CSH 108
+ + + CPKC F Q Q R D M FY C + C H
Sbjct: 60 ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
>SPAC22A12.05 [K] KOG2906 RNA polymerase III subunit C11
Length = 109
Score = 51.6 bits (122), Expect = 2e-07
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 5 RFCRDCNNMLYPREDKETHKLLFECRTCPYVEEAGTPLVYRHEL-KTNIGETAGVVQDIG 63
+FC C N L D+E F+CRTCPY T L RHE + + + G +
Sbjct: 2 QFCPTCGNHLIVAVDEEGRNA-FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFE 60
Query: 64 SDPTLPRSDKECP--KCHSRENVFFQSQQRRKDTSMVLFYVCLHC 106
S+ +++ C KC + FFQ Q R D M FY C C
Sbjct: 61 SNQ---QTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKC 102
>YDR045c [K] KOG2906 RNA polymerase III subunit C11
Length = 110
Score = 47.0 bits (110), Expect = 4e-06
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 11/108 (10%)
Query: 6 FCRDCNNMLYPREDKETHKLLFECRTCPY-VEEAGTPLVYRHEL-KTNIGETAGVVQDIG 63
FC CNNML ++ CR+CPY G + R +L + + + G G
Sbjct: 4 FCPSCNNMLLITSG-DSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLG-----G 57
Query: 64 SDPTLPRSDKECPK---CHSRENVFFQSQQRRKDTSMVLFYVCLHCSH 108
+ ++ +CP C FFQ Q R D M FY C++C H
Sbjct: 58 GWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGH 105
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,970,057
Number of Sequences: 60738
Number of extensions: 323251
Number of successful extensions: 825
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 11
length of query: 122
length of database: 30,389,216
effective HSP length: 98
effective length of query: 24
effective length of database: 24,436,892
effective search space: 586485408
effective search space used: 586485408
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)