ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV0868   suspect: LH   L     KOG2401  Replication, recombination and repair                          Predicted MutS-related protein involved in mismatch repair

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0868  283448 282708 -247 
         (247 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPL199c [L] KOG2401 Predicted MutS-related protein involved in m...   181   1e-45
SPAC11H11.03c [L] KOG2401 Predicted MutS-related protein involve...    89   4e-18

>YPL199c [L] KOG2401 Predicted MutS-related protein involved in mismatch
           repair
          Length = 240

 Score =  181 bits (458), Expect = 1e-45
 Identities = 86/172 (50%), Positives = 120/172 (69%), Gaps = 3/172 (1%)

Query: 8   GALLSTE---KDYNHATDKEYQRLRGLADQAYKERQKLXXXXXXXFKTGDXXXXXXXXXX 64
           G ++ T+   +DYNH+TD+EYQRLR LAD+AYK+R +L       ++ GD          
Sbjct: 6   GVVVGTQNPVRDYNHSTDEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEK 65

Query: 65  XXXXXXXXXDYNLQAAEYVFVANNADSSSNEIDLHGLYVKEAKWILQRRVAAAVKNGESE 124
                    D+N+QAAEYVFV NNADSSSNEIDLHGLYVKEA +ILQ+R+  A+ + E +
Sbjct: 66  SKAQLKTAEDFNMQAAEYVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQ 125

Query: 125 LQVIVGKGLHSSNGVAKLKPAIQELCDEANLNDHVDSKNTGVVIIDLTGARI 176
           L VIVGKGLHS NG+AKLKP+I+E C +  + +H++  N+GV++++L G ++
Sbjct: 126 LNVIVGKGLHSQNGIAKLKPSIEEFCAKHGIRNHLEKGNSGVLVLELQGVQM 177


>SPAC11H11.03c [L] KOG2401 Predicted MutS-related protein involved in mismatch
           repair
          Length = 206

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 23  KEYQRLRGLADQAYKERQKLXXXXXXXFKTGDXXXXXXXXXXXXXXXXXXXDYNLQAAEY 82
           +EY++ R LA +  ++R  L       +  G+                   +YN QAA  
Sbjct: 2   EEYEKFRALASKEAEKRGYLFQEAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAASA 61

Query: 83  VFVANNADSSSNEIDLHGLYVKEAKWILQRRVAAAVKNGESELQVIVGKGLHSSNGVAKL 142
           +++  N+  + +EIDLHGLY+ EA   +Q+R+   ++ G++ L +IVG+G HS+N V KL
Sbjct: 62  IYLYKNSQCNPDEIDLHGLYIDEAVQAVQQRIENCIRRGDNHLHIIVGRGNHSANHVEKL 121

Query: 143 KPAIQELCDEANLNDHVDSKNTGVVIIDLTGARIPV 178
           +PAI  + ++ ++  +    N G + + L  A  P+
Sbjct: 122 RPAIVRMLEQQSIK-YNSEVNEGRIYVYLPSATSPI 156


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,844,409
Number of Sequences: 60738
Number of extensions: 350428
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 30,389,216
effective HSP length: 104
effective length of query: 143
effective length of database: 24,072,464
effective search space: 3442362352
effective search space used: 3442362352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)