ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV0875.1   suspect: LH  R     KOG0017   General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV0875.1 286087 285920 -56  
         (56 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44510 [R] KOG0017 FOG: Transposon-encoded proteins with TYA ...    28   1.8  
At3g01770 [K] KOG1474 Transcription initiation factor TFIID subu...    27   5.3  

>At1g44510 [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 1459

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 7   VTSLVDQLSNSRVRWVTVSNVW----FNQLQQFRSSLGDLDKGT 46
           V SLV + +NS   W T++N +    +  ++Q R  +  L KGT
Sbjct: 103 VQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGT 146


>At3g01770 [K] KOG1474 Transcription initiation factor TFIID subunit BDF1
          and related bromodomain proteins
          Length = 601

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 7  VTSLVDQLSNSRVRWVTVSNVWFNQLQQFRSSLGDL 42
          V  L D  S+ R +W+        QL+ F+ S+GDL
Sbjct: 42 VLPLSDLSSSERRKWIHTLRQELEQLRSFQKSVGDL 77


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,730,932
Number of Sequences: 60738
Number of extensions: 67009
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 30,389,216
effective HSP length: 32
effective length of query: 24
effective length of database: 28,445,600
effective search space: 682694400
effective search space used: 682694400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)