ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0945 good C KOG2792 Energy production and conversion Putative cytochrome C oxidase assembly protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0945 313599 312664 -312
(312 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR037c [C] KOG2792 Putative cytochrome C oxidase assembly protein 390 e-108
YBR024w [C] KOG2792 Putative cytochrome C oxidase assembly protein 348 6e-96
SPBC119.06 [C] KOG2792 Putative cytochrome C oxidase assembly pr... 213 2e-55
At3g08950 [C] KOG2792 Putative cytochrome C oxidase assembly pro... 173 3e-43
7296911 [C] KOG2792 Putative cytochrome C oxidase assembly protein 172 6e-43
Hs4759068 [C] KOG2792 Putative cytochrome C oxidase assembly pro... 168 1e-41
Hs4826992 [C] KOG2792 Putative cytochrome C oxidase assembly pro... 152 6e-37
CE06743 [C] KOG2792 Putative cytochrome C oxidase assembly protein 139 7e-33
At4g39740 [C] KOG2792 Putative cytochrome C oxidase assembly pro... 96 7e-20
>YBR037c [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 295
Score = 390 bits (1001), Expect = e-108
Identities = 188/251 (74%), Positives = 211/251 (83%), Gaps = 3/251 (1%)
Query: 64 KKPLSRIPIGGAETHTQ-KVDTGSTIEFTTWKAAALFILIGGGVYYFFKNEKQRLETEKE 122
KKPLSR+P+GG KV GS IEF+T KA ALF+ +GG + YFF EK+RLET+KE
Sbjct: 45 KKPLSRVPVGGTPIKDNGKVREGS-IEFSTGKAIALFLAVGGALSYFFNREKRRLETQKE 103
Query: 123 AEANRGYGRPLVGGPFSLIDFNGNPFTEKDLLGKFSIIYFGFSHCPDICPDELDKLGAWL 182
AEANRGYG+P +GGPF L D GN FTEK+LLGKFSIIYFGFS+CPDICPDELDKLG WL
Sbjct: 104 AEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWL 163
Query: 183 TELK-KRDINLQPVFITCDPARDPPEVLKEYLSEFHPDIIGLTGDYDAVKNACKKYRVYF 241
L K I LQP+FITCDPARD P VLKEYLS+FHP I+GLTG +D VKNACKKYRVYF
Sbjct: 164 NTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYF 223
Query: 242 STPPNVKPGQDYLVDHSIFFYLMDPEGQFIDALGRNYDEQTGVEKIVEHVSAYVPKEERE 301
STPPNVKPGQDYLVDHSIFFYLMDPEGQF+DALGRNYDE+TGV+KIVEHV +YVP E+R
Sbjct: 224 STPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPAEQRA 283
Query: 302 KRKDKWYSFLF 312
K+K+ WYSFLF
Sbjct: 284 KQKEAWYSFLF 294
>YBR024w [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 301
Score = 348 bits (893), Expect = 6e-96
Identities = 160/250 (64%), Positives = 199/250 (79%), Gaps = 2/250 (0%)
Query: 64 KKPLSRIPIGGAETHTQKVDTGSTIEFTTWKAAALFILIGGGVYYFFKNEKQRLETEKEA 123
++PL R+ +G + + T +F+ WKA +L+ GG Y + +++ LETEKEA
Sbjct: 52 RQPLDRLQLGDEINEPEPIRT-RFFQFSRWKATIALLLLSGGTYAYLSRKRRLLETEKEA 110
Query: 124 EANRGYGRPLVGGPFSLIDFNGNPFTEKDLLGKFSIIYFGFSHCPDICPDELDKLGAWLT 183
+ANR YG +GGPF+L DFNG PFTE++L GKFSI+YFGFSHCPDICP+ELD+L W++
Sbjct: 111 DANRAYGSVALGGPFNLTDFNGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWIS 170
Query: 184 ELKKRD-INLQPVFITCDPARDPPEVLKEYLSEFHPDIIGLTGDYDAVKNACKKYRVYFS 242
EL +D I +QP+FI+CDPARD P+VLKEYLS+FHP IIGLTG YD VK+ CKKY+VYFS
Sbjct: 171 ELDDKDHIKIQPLFISCDPARDTPDVLKEYLSDFHPAIIGLTGTYDQVKSVCKKYKVYFS 230
Query: 243 TPPNVKPGQDYLVDHSIFFYLMDPEGQFIDALGRNYDEQTGVEKIVEHVSAYVPKEEREK 302
TP +VKP QDYLVDHSIFFYL+DPEGQFIDALGRNYDEQ+G+EKI E + AYVPKEERE+
Sbjct: 231 TPRDVKPNQDYLVDHSIFFYLIDPEGQFIDALGRNYDEQSGLEKIREQIQAYVPKEERER 290
Query: 303 RKDKWYSFLF 312
R KWYSF+F
Sbjct: 291 RSKKWYSFIF 300
>SPBC119.06 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 263
Score = 213 bits (543), Expect = 2e-55
Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 8/201 (3%)
Query: 105 GVYYFFKNEKQRLETEKEAEANRGYGRPLVGGPFSLIDFNGNPFTEKDLLGKFSIIYFGF 164
G+Y +F++EK+++ + + GRP +GG FSLID +GN T+ D GKFS+IYFGF
Sbjct: 68 GLYAYFQHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDNDFKGKFSLIYFGF 127
Query: 165 SHCPDICPDELDKLGAWLTELKK--RDINLQPVFITCDPARDPPEVLKEYLSEFHPDIIG 222
+ CPDICPDELDK+ A + + D+ + P+FITCDPARDPP+ + EYL +F+P I+G
Sbjct: 128 TRCPDICPDELDKMSAAIDIVNNVVGDV-VYPIFITCDPARDPPQEMAEYLEDFNPKIVG 186
Query: 223 LTGDYDAVKNACKKYRVYFSTPPNVKPGQ-DYLVDHSIFFYLMDPEGQFIDALGRNYDEQ 281
LTG Y+ +K+ CKK+RVYFSTP N+ P + DYLVDHS+FFYLMDPEG+FI+ GRN
Sbjct: 187 LTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLVDHSVFFYLMDPEGKFIEVFGRN---- 242
Query: 282 TGVEKIVEHVSAYVPKEEREK 302
+ E + + +Y +++K
Sbjct: 243 STSEDLARAIGSYYLSRKKQK 263
>At3g08950 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 273
Score = 173 bits (439), Expect = 3e-43
Identities = 98/265 (36%), Positives = 150/265 (55%), Gaps = 11/265 (4%)
Query: 38 LSVSATKLQEIKKYDPAPAVGSPKPKKKPLSRIPIGGAETHTQKVDTGSTIEF--TTWKA 95
LS SA+ S K +K S GG++ H + +G + +W +
Sbjct: 10 LSTSASDTTSKHDSGKPETKSSEKNEKSGGSESSDGGSD-HKNERASGKDVRGGPVSWMS 68
Query: 96 AALFILIGGGVYYFFKNEKQRL--ETEKEAEANR---GYGRPLVGGPFSLIDFNGNPFTE 150
L G G+ Y++ +K+R + K + A + G+ +GGPFSLI +G TE
Sbjct: 69 FFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDDGKRVTE 128
Query: 151 KDLLGKFSIIYFGFSHCPDICPDELDKLGAWLTELKKRD-INLQPVFITCDPARDPPEVL 209
K+L+GK++I+YFGF+HCPDICPDEL KL A + ++K+ +++ PVFI+ DP RD + +
Sbjct: 129 KNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQV 188
Query: 210 KEYLSEFHPDIIGLTGDYDAVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ 269
EY+ EFHP +IGLTG + +K+ + YRVY+ + DYLVDHSI YLM PE
Sbjct: 189 HEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYM--KTEEEDSDYLVDHSIVMYLMSPEMN 246
Query: 270 FIDALGRNYDEQTGVEKIVEHVSAY 294
F+ G+N+D + + +V+ + Y
Sbjct: 247 FVKFYGKNHDVDSLTDGVVKEIRQY 271
>7296911 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 251
Score = 172 bits (436), Expect = 6e-43
Identities = 84/220 (38%), Positives = 131/220 (59%), Gaps = 8/220 (3%)
Query: 92 TWKAAALFILIGGGVYYFFKNEKQRLETEKEAEANRGYGRPLVGGPFSLIDFNGNPFTEK 151
+W++ A+ +G G F K + + E R G+ +GG + L+D G +
Sbjct: 38 SWRSLAVIGALGAGGVGFMLYVKSEKDEARMKERQRQLGKAAIGGSWELVDSQGAVRKSE 97
Query: 152 DLLGKFSIIYFGFSHCPDICPDELDKLGAWLTELKK--RDINLQPVFITCDPARDPPEVL 209
D LGK+ +IYFGF+HCPDICPDEL+K+ A + E++K + +QP+FIT DP RD EV+
Sbjct: 98 DFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVDPERDSKEVV 157
Query: 210 KEYLSEFHPDIIGLTGDYDAVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ 269
+Y+ EF P ++GLTG + ++ CK +RVYFS P DY+VDH+I YL++P+G+
Sbjct: 158 AKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPR-DEDNDYIVDHTIIMYLVNPDGE 216
Query: 270 FIDALGRNYDEQTGVEKIVEHVSAYVPKEEREKRKDKWYS 309
F+D G+N D+ V I+ +++ + K W+S
Sbjct: 217 FVDYYGQNRDKDQCVASILVNIAKW-----NSMNKKGWFS 251
>Hs4759068 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 301
Score = 168 bits (425), Expect = 1e-41
Identities = 83/208 (39%), Positives = 123/208 (58%), Gaps = 3/208 (1%)
Query: 92 TWKAAALFILIGGGVYYFFKNEKQRLETEKEAEANRGYGRPLVGGPFSLIDFNGNPFTEK 151
+WK+ A+ IGG + K+ K+ + E E R G+PL+GGPFSL G T+K
Sbjct: 94 SWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKTDK 153
Query: 152 DLLGKFSIIYFGFSHCPDICPDELDKLGAWLTELKKRDI--NLQPVFITCDPARDPPEVL 209
D LG++ +IYFGF+HCPD+CP+EL+K+ + E+ +L P+FI+ DP RD E +
Sbjct: 154 DYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAI 213
Query: 210 KEYLSEFHPDIIGLTGDYDAVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ 269
Y+ EF P ++GLTG + V + YRVY+S P +DY+VDH+I YL+ P+G+
Sbjct: 214 ANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPK-DEDEDYIVDHTIIMYLIGPDGE 272
Query: 270 FIDALGRNYDEQTGVEKIVEHVSAYVPK 297
F+D G+N + I H+ Y K
Sbjct: 273 FLDYFGQNKRKGEIAASIATHMRPYRKK 300
>Hs4826992 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 266
Score = 152 bits (384), Expect = 6e-37
Identities = 89/225 (39%), Positives = 126/225 (55%), Gaps = 8/225 (3%)
Query: 73 GGAETHTQKVDTGSTIEFTTWKAAALFILIGGGVYYFFKNEKQRLETEKEAEANRGYGRP 132
G AET Q G + T LF GG + + EK+RL+ +K EA R +
Sbjct: 42 GPAETGGQGQPQGPGLR-TRLLITGLFGAGLGGAWLALRAEKERLQQQKRTEALR---QA 97
Query: 133 LVG-GPFSLIDFNGNPFTEKDLLGKFSIIYFGFSHCPDICPDELDKLGAWLTELKKRD-- 189
VG G F L+D G + D G++ ++YFGF+HCPDICPDEL+KL + +L+
Sbjct: 98 AVGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGL 157
Query: 190 INLQPVFITCDPARDPPEVLKEYLSEFHPDIIGLTGDYDAVKNACKKYRVYFSTPPNVKP 249
+QPVFIT DP RD E + Y+ +FHP ++GLTG V A YRVY++ P
Sbjct: 158 PPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPK-DE 216
Query: 250 GQDYLVDHSIFFYLMDPEGQFIDALGRNYDEQTGVEKIVEHVSAY 294
QDY+VDHSI YL++P+G F D GR+ + + + H++A+
Sbjct: 217 DQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAF 261
>CE06743 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 312
Score = 139 bits (349), Expect = 7e-33
Identities = 100/314 (31%), Positives = 152/314 (47%), Gaps = 18/314 (5%)
Query: 1 MLRSIVRVPSITFASKEAMRPVLRKTTLAHFMNHYRS------LSVSATKLQEIKKYDPA 54
MLR++ S K +PV + A F + + L KL EI K
Sbjct: 1 MLRTVSLACSTANLCKNT-KPVWTLASAARFSDKNKGDDLETDLQKDLKKLNEILKTGIT 59
Query: 55 PAVGSPKPKKKPLSRIPIGGAETHTQKVDTGSTIEFTTWKAAALFILIGGG-VYYFFKNE 113
+ PK+ P+ + + + Q+ S+I WK +GG + F +
Sbjct: 60 ETETTSSPKEPPVDKNFMNFRKQAEQEAFQRSSI--FNWKTVLGTFAVGGTCLAALFYIK 117
Query: 114 KQRLETEKEAEANRGYGRPLVGGPFSLIDFNGNPFTEKDLLGKFSIIYFGFSHCPDICPD 173
K RL+ E+E + G+ +GG + L++ +G ++L G + ++YFGF++CPDICPD
Sbjct: 118 KIRLD-EREKHRKQTAGKARIGGEWELMNTDGKMEGSQELRGNWLLMYFGFTNCPDICPD 176
Query: 174 ELDKL--GAWLTELKKRDINLQPVFITCDPARDPPEVLKEYLSEFHPDIIGLTGDYDAVK 231
E++K+ + E KK + PVFI+ DP RD +KEY SEF + G TG + V
Sbjct: 177 EIEKMVKVVEIIEAKKDATPIVPVFISVDPERDSVARVKEYCSEFSNKLRGFTGTTEQVN 236
Query: 232 NACKKYRVYFSTPPNV-KPGQDYLVDHSIFFYLMDPEGQFIDALGRNYDEQTGVEKIVEH 290
K +RVY S P K DY+VDH++ YL+DP GQF D G+N E+I
Sbjct: 237 KVAKTFRVYHSQGPRTNKQEDDYIVDHTVIMYLIDPSGQFHDYYGQN----RKAEEIANV 292
Query: 291 VSAYVPKEEREKRK 304
+ V K + + RK
Sbjct: 293 IEMKVLKYQAQNRK 306
>At4g39740 [C] KOG2792 Putative cytochrome C oxidase assembly protein
Length = 429
Score = 95.9 bits (237), Expect = 7e-20
Identities = 69/244 (28%), Positives = 115/244 (46%), Gaps = 32/244 (13%)
Query: 58 GSPKPKKKPLSRIPIGGAETHTQKVDTGSTIEFTTWKAAALFILIGGGVYYFFKNEKQRL 117
G P KPL P GG + + A+ + G V + N+++R
Sbjct: 207 GHEIPDVKPL--FPTGGGTQAPSR-------SRARYAVPAILLGFAGFVGFLHYNDERRA 257
Query: 118 ETEKEAEANRGYG--------RPLVGGPFSLIDFNGNPFTEKDLLGKFSIIYFGFSHCPD 169
+A +N G G P++GGPF+L+ TE D GK+ ++YFG+S PD
Sbjct: 258 VPRGQASSNSGCGCGSNTTVKGPIIGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPD 317
Query: 170 ICPDELDKLGAWLTELKKRDINLQPVFITCDPARDPPEVLKEYLSEFHPDIIGLTGDYDA 229
+ P++L + + +L I L P+ C L Y +EF I+GLTG A
Sbjct: 318 VGPEQLKMMSKAVDKLA---ILLNPLTFGC---------LYLY-AEFDSRILGLTGTASA 364
Query: 230 VKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFIDALGRNYDEQTGVEKIVE 289
++ ++YRVYF + G+DYLVD S YL++P+ + + G Y+ +++++
Sbjct: 365 MRQMAQEYRVYFKKVQ--EDGEDYLVDTSHNMYLINPKMEIVRCFGVEYNPDELSQELLK 422
Query: 290 HVSA 293
V++
Sbjct: 423 EVAS 426
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,440,516
Number of Sequences: 60738
Number of extensions: 1042016
Number of successful extensions: 2548
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2521
Number of HSP's gapped (non-prelim): 9
length of query: 312
length of database: 30,389,216
effective HSP length: 106
effective length of query: 206
effective length of database: 23,950,988
effective search space: 4933903528
effective search space used: 4933903528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)