ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0954 good D KOG2688 Cell cycle control, cell division, chromosome partitioning Transcription-associated recombination protein - Thp1p
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0954 317207 315849 -453
(453 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL072w [D] KOG2688 Transcription-associated recombination prote... 306 4e-83
7294700_1 [D] KOG2688 Transcription-associated recombination pro... 61 4e-09
SPBC1105.07c [D] KOG2688 Transcription-associated recombination ... 54 4e-07
Hs8922987 [D] KOG2688 Transcription-associated recombination pro... 52 1e-06
CE29189 [D] KOG2688 Transcription-associated recombination prote... 50 9e-06
>YOL072w [D] KOG2688 Transcription-associated recombination protein - Thp1p
Length = 455
Score = 306 bits (784), Expect = 4e-83
Identities = 177/452 (39%), Positives = 269/452 (59%), Gaps = 16/452 (3%)
Query: 8 LKAGDFSVLDINIERNGQLILELQQFLRSNDSIDLETLINSHSLYENRWTRFNNLVSSFL 67
L G+FS L +N+ +NG+ I LQ+ L D LET + H N TRF + +SFL
Sbjct: 11 LAHGNFSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPND-TRFKIMCTSFL 69
Query: 68 GYCKELNPYSLWESSFSVFQYYQDLNTCLTNETTMYPIDSLVPLFTATTELVIPMAIRLD 127
Y ++++P+S W SS +F++YQ L CL N+ + I+ L+P+ T TE +I +A +LD
Sbjct: 70 NYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPH-IEMLIPVATRETEFIINLAGKLD 128
Query: 128 ANHKIIGTRQHQFLTHIASIISKLFNSIKARVDDDKVEFDHLSGKQKVLLYISNKLNMIY 187
+ H + TR HQFL+HI+SI+S+LFNSIK ++ GKQ++LLY+ NKLN IY
Sbjct: 129 SFHLQLHTRSHQFLSHISSILSRLFNSIKP--PRGNASSTNIPGKQRILLYLVNKLNNIY 186
Query: 188 FKINSPSSCANIFKNLKPKSNIYSFNQYPLTERIQXXXXXXXXXXXNHRMVNAFHQLNQC 247
F+I SP C+NIFKN +PKS + FN+Y L ++I+ N ++ NAF Q N+
Sbjct: 187 FRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246
Query: 248 YELLATLP-DSIAKQNNRRRLLKFLVPCGIIISKLPDFNKLSQWDPILAQK----YTALV 302
++ L LP + A N R+L +++P G+I+ K+ + L P L+Q+ ++ L
Sbjct: 247 FQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLR---PFLSQETIDNWSVLY 303
Query: 303 IAVKNGNLNRVNFWLYENESWLKSSKLLIVLLEKLPIITFRSLLRSIFLYYCIPRNSNKL 362
V+ GN+ V+ WL +NE L + +LLIVLLEKLP++T+R+L++++ + NKL
Sbjct: 304 KHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKL 363
Query: 363 PYSVIRPILAKSIG--LYPP--EMPSIYKDNYTAESLENILVTLSIQQLWKGNVFPSLQV 418
PYS+I +L SIG P + +IY ++ +++EN+LVTL L + N FP LQ+
Sbjct: 364 PYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQL 423
Query: 419 CVTMKTNDISVIFPNINEKIVSRFSLNQEDSW 450
CV KT I I P +NE+I F + W
Sbjct: 424 CVVKKTTMIQEIVPPVNERITKMFPAHSHVLW 455
>7294700_1 [D] KOG2688 Transcription-associated recombination protein - Thp1p
Length = 372
Score = 60.8 bits (146), Expect = 4e-09
Identities = 47/180 (26%), Positives = 90/180 (49%), Gaps = 12/180 (6%)
Query: 172 KQKVLLYISNKLNMIYFKINSPSSCANIFKNLKPKSNIYSFNQYPLTERIQXXXXXXXXX 231
K+ ++ + N+L IYF+IN C + + + N + +PL E+I
Sbjct: 162 KRLGMMNLVNQLFKIYFRINKLHLCKPLIRAI---DNCIFKDSFPLPEQITYKYFVGRRA 218
Query: 232 XXNHRMVNAFHQLNQCYELLATLPDSIAKQNNRRRLLKFLVPCGIIISKLPDFNKLSQWD 291
+ A L+ + + PD A +N+R +L +LVP +++ LP + L ++D
Sbjct: 219 MFDSNYQAAVQYLSYAF---SNCPDRFA--SNKRLILIYLVPVKMLLGYLPSKSLLQRYD 273
Query: 292 PILAQKYTALVIAVKNGNLNRVNFWLYENESWLKSSKLLIVLLEKLPIITFRSLLRSIFL 351
+L + L +A+K GN+NR + + + E L S + + L+EKL + +R+L + +F+
Sbjct: 274 LLL---FLDLAMAMKAGNVNRFDEIVRDQELVLIRSGIYL-LVEKLKFLVYRNLFKKVFV 329
>SPBC1105.07c [D] KOG2688 Transcription-associated recombination protein - Thp1p
Length = 442
Score = 54.3 bits (129), Expect = 4e-07
Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 36/344 (10%)
Query: 89 YQDLNTCLTNETTMYPIDSLVPLFTATTELVIPMAIRLDANHKII-------GTRQHQFL 141
Y +L TC ++ + L + ++L + ++++LD + + G Q +++
Sbjct: 96 YSNLTTCFSHIDGAW----LCTIVKRVSKLYVKLSLQLDTSTPTLEDSFDGNGFIQRKYV 151
Query: 142 THIASIISKLFNSIKARVDDDKVEFDHLSGKQKVLLYISNKLNMIYFKINSPSSCANIFK 201
+ + + + FNSI + D + + K+ + I+N L ++YF++ C I
Sbjct: 152 SDASRNVLRTFNSI---LSDRQQNIN--PSKKDAIFCIANLLCLLYFRLKQIRLCQTI-- 204
Query: 202 NLKPKSNIYSFNQYPLTERIQXXXXXXXXXXXNHRMVNAFHQLNQCYELLATLPDSIAKQ 261
++N+ S + H HQ + L + L
Sbjct: 205 ----QANVISSGADISRATMAELVTFRYYLGRCHLYQRKIHQAKD-HLLFSFLQCPDECY 259
Query: 262 NNRRRLLKFLVPCGIIISKLPDFNKLSQWDPILAQKYTALVIAVKNGNLNRVNFWLYENE 321
+ +R L +L C +I+ K P L ++ L + L+ A+K+G++ L +N
Sbjct: 260 HQKRLSLIYLTTCLLILGKSPTKGLLEKYK--LTAAFEPLIKALKSGDIKSFRLSLEDNS 317
Query: 322 --SWLKSSKLLIVLLEKLPIITFRSLLRSIFLYYCIPRNSNKLPYSVIRPILAKSIGLYP 379
W + + LL++ II +R+L R +FL+ S K P+ L
Sbjct: 318 RRKWFIKRGIYLTLLDRCEIILWRNLFRKVFLFTF--EQSQKTPH-------VSGSYLLT 368
Query: 380 PEMPSIYKDNYTAESLENILVTLSIQQLWKGNVFPSLQVCVTMK 423
S ++Y + +E I V+L Q KG + + V K
Sbjct: 369 AARLSTNDNSYDMDDVECICVSLIDQGYIKGYIIHASSTLVLKK 412
>Hs8922987 [D] KOG2688 Transcription-associated recombination protein - Thp1p
Length = 453
Score = 52.4 bits (124), Expect = 1e-06
Identities = 42/176 (23%), Positives = 83/176 (46%), Gaps = 12/176 (6%)
Query: 176 LLYISNKLNMIYFKINSPSSCANIFKNLKPKSNIYSFNQYPLTERIQXXXXXXXXXXXNH 235
+L++ N+L IYFKIN C + + + SN+ + Y +R+ +
Sbjct: 222 MLFLVNQLFKIYFKINKLHLCKPLIRAID-SSNLK--DDYSTAQRVTYKYYVGRKAMFDS 278
Query: 236 RMVNAFHQLNQCYELLATLPDSIAKQNNRRRLLKFLVPCGIIISKLPDFNKLSQWDPILA 295
A L+ +E + Q N+R +L +L+P +++ +P L ++
Sbjct: 279 DFKQAEEYLSFAFEHCHR-----SSQKNKRMILIYLLPVKMLLGHMPTVELLKKYH---L 330
Query: 296 QKYTALVIAVKNGNLNRVNFWLYENESWLKSSKLLIVLLEKLPIITFRSLLRSIFL 351
++ + AV GNL ++ L ++E++ + + L EKL IIT+R+L + ++L
Sbjct: 331 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLTL-EKLKIITYRNLFKKVYL 385
>CE29189 [D] KOG2688 Transcription-associated recombination protein - Thp1p
Length = 413
Score = 49.7 bits (117), Expect = 9e-06
Identities = 40/178 (22%), Positives = 88/178 (48%), Gaps = 11/178 (6%)
Query: 172 KQKVLLYISNKLNMIYFKINSPSSCANIFKNLKPKSNIYSFNQYPLTERIQXXXXXXXXX 231
K+ +L ++N+L IYF+IN + + + + ++Y + + +++++
Sbjct: 175 KKVAMLNMTNQLFQIYFQINKLNLLKPLIRAIDNCGSLY--HDFLMSDKV-----AYNYF 227
Query: 232 XXNHRMVNAFHQLNQCYELLATLPDSIAKQNNRRRLLKFLVPCGIIISKLPDFNKLSQWD 291
M +A L + L A +N+R++L +L+P + + +P L ++
Sbjct: 228 LGRKAMFDADLNLAEKSLLYAFRNCPADSMSNKRKILIYLIPVKMFLGHMPTSQLLHEYR 287
Query: 292 PILAQKYTALVIAVKNGNLNRVNFWLYENESWLKSSKLLIVLLEKLPIITFRSLLRSI 349
++ +V VK+GNL +++ L NE++ + + +LEKL +ITFR+L + +
Sbjct: 288 ---LDEFQDVVAGVKDGNLAQLDGALAANEAFFIKCGIFL-MLEKLRMITFRTLFKKV 341
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,158,419
Number of Sequences: 60738
Number of extensions: 1054368
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2724
Number of HSP's gapped (non-prelim): 5
length of query: 453
length of database: 30,389,216
effective HSP length: 110
effective length of query: 343
effective length of database: 23,708,036
effective search space: 8131856348
effective search space used: 8131856348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)