ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0969 suspect: LH S KOG4643 Function unknown Uncharacterized coiled-coil protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0969 320199 320528 110
(110 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
Hs8923838 [S] KOG4643 Uncharacterized coiled-coil protein 46 7e-06
>Hs8923838 [S] KOG4643 Uncharacterized coiled-coil protein
Length = 742
Score = 46.2 bits (108), Expect = 7e-06
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 5 RTTELEGDLAQLTYELGLKDKEVMTLK---QSLERLNAEVEKLRNENRGLKSELEHWNKL 61
R ELE +L L E L K++ LK + +E L E +L ENR LK L+ + L
Sbjct: 551 RAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNL 610
Query: 62 PMSPISLSSENDQTEDDKNRMIQENLRREILSLK 95
SL EN Q +++ LRR + SLK
Sbjct: 611 TFQLESLEKENSQLDEE-----NLELRRNVESLK 639
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.308 0.127 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,898,994
Number of Sequences: 60738
Number of extensions: 221541
Number of successful extensions: 1857
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1853
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 30,389,216
effective HSP length: 86
effective length of query: 24
effective length of database: 25,165,748
effective search space: 603977952
effective search space used: 603977952
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)